Citrus Sinensis ID: 019543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEcccccccccccHHccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHcccccEEEEEEEccHHHHHHHHHHccEEEEEEccccHHHHHccccccccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHccccccccccccccccccccccEcccccccccccccEcccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEEEcccHHHHHHHHHHccccEEcccccccccEEEccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msveeepgvSTLLMnfsnefdpygalstplyqtatfkqpsatengpydytrsgnptRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGtgeeivagddlyggtDRLLSRKIAEMAHAHGALLLvdnsimspvlsrplelgADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQnaegsglapfdcwiCLRGVKTMALRVEKQQDNAQKIAEFLAShprvkkvnyaglpehpghelhysqakgagSVLSFLTGSLALSKHVVETTKYFSITVSfgsvkslismpcfmshasipvEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Flexible Loop (DISEMBL)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIsvgiedvndlisdldkalrtgpl
Low Complexity Region (SEG)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESllakldkadralCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered region (IsUnstruct)
***********LLMNFSNEFDPYGALSTPLYQT*****************************LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ**NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD**********
Disordered Region (DISOPRED)
******P****LLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP*
Disordered Region (DISEMBL)
*********STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Disordered Region (DISPRO)
******PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
P53780	464	Cystathionine beta-lyase,	yes	no	1.0	0.730	0.746	1e-169
O94350	390	Cystathionine beta-lyase	yes	no	0.955	0.830	0.457	9e-85
Q55DV9	387	Cystathionine gamma-lyase	yes	no	0.917	0.803	0.425	1e-79
O31632	390	Cystathionine beta-lyase	yes	no	0.920	0.8	0.423	2e-79
O05394	379	Cystathionine gamma-lyase	no	no	0.917	0.820	0.410	2e-77
A2RM21	380	Cystathionine beta-lyase	yes	no	0.917	0.818	0.422	8e-77
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.917	0.818	0.422	8e-77
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.917	0.818	0.419	3e-75
P56069	380	Cystathionine gamma-synth	yes	no	0.917	0.818	0.410	7e-74
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.917	0.818	0.407	8e-74

>sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1

 Score =  593 bits (1530), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 319/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 8

>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4

 Score =  313 bits (803), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/376 (45%), Positives = 232/376 (61%), Gaps = 52/376 (13%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           V T L++     D Y A S P+YQ+ATFKQP     G +DYTRSGNPTR  L+  LAKL 
Sbjct: 9   VDTELVHVEGNEDQYHASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLM 68

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------- 111
           KA  A   ++GM+AL  +     +   +VAG DLYGG+DRLLS                 
Sbjct: 69  KAKHAFVTSNGMSALDMILRCCKSNSHVVAGHDLYGGSDRLLSFNQRQYGFKVDNVDTSD 128

Query: 112 ------------------------------RKIAEM--AHAHGALLLVDNSIMSPVLSRP 139
                                         R I ++  + A  ALL++DN+++SPVL  P
Sbjct: 129 LAAFEAALRPDTNLVLIESPTNPRISICDIRAIVKITRSKAKDALLVMDNTMLSPVLCNP 188

Query: 140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG 199
           L+ G DIV  SATK+++GH D+M GV+A K + +AK ++F  NA G+ +APF+C++ LRG
Sbjct: 189 LDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFFNINAMGAAMAPFECFLLLRG 248

Query: 200 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEHPGHELHYSQAKGAGSVLSFL 258
           +KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+     + YS A+G G+V+S  
Sbjct: 249 IKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVF 306

Query: 259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 318
           TG + +SK +V TTK F I+VSFG+V SLISMP +MSHASI  EVR ARGL+EDL+RI V
Sbjct: 307 TGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICV 366

Query: 319 GIEDVNDLISDLDKAL 334
           GIE+V+DL +DL+ AL
Sbjct: 367 GIENVDDLKADLENAL 382

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q55DV9|CGL_DICDI Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1

 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/360 (42%), Positives = 213/360 (59%), Gaps = 49/360 (13%)

Query: 24  GALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           GA+  P+  + TF QPS    +  YDY+RSGNPTR A E  +A  + A  AL F SG+A 
Sbjct: 25  GAVIVPISLSTTFLQPSPGVLHSEYDYSRSGNPTRKAFEECIAACENAKYALSFASGLAT 84

Query: 83  LAAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------ 112
           L  +THLL +G+E+++ DD+YGGT R  +R                              
Sbjct: 85  LTTITHLLKSGDEVISIDDVYGGTRRYFTRVAANFDLKFSFVDLSTLDDLKNAFTDKTRL 144

Query: 113 -----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFI 155
                             +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I
Sbjct: 145 VWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYI 204

Query: 156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 215
            GHSD + GVLA   + L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA 
Sbjct: 205 NGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAF 264

Query: 216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKY 274
            I  FL  HP+V++V Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E  K 
Sbjct: 265 AICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKL 324

Query: 275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           F++  S G V+SLI +P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct: 325 FALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/359 (42%), Positives = 214/359 (59%), Gaps = 47/359 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+   +TF Q S  E G YDY+RSG PTR ALE  +A L+   R   F+SGMAA+
Sbjct: 24  GAVSVPIQHASTFHQSSFEEFGAYDYSRSGTPTRTALEETIAALEGGTRGFAFSSGMAAI 83

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------------------- 111
           +    LL  G+ ++  +D+YGGT R+++                                
Sbjct: 84  STAFLLLSQGDHVLVTEDVYGGTFRMVTEVLTRFGIEHTFVDMTDRNEVARSIKPNTKVI 143

Query: 112 ---------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                          + + ++A  +G L  +DN+ M+P L RPL+LG DIV+HSATKF++
Sbjct: 144 YMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLS 203

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV++G+ AVK E L K+LY LQNA G+ L   DCW+ LRG+KT+ +R+EK    AQ+
Sbjct: 204 GHSDVLSGLAAVKDEELGKQLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQR 263

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           +AEF   HP VK+V Y GL +HPG E H SQ+ GAG+VLSF   S    K +VE      
Sbjct: 264 LAEFFQKHPAVKRVYYPGLADHPGAETHKSQSTGAGAVLSFELESKEAVKKLVENVSLPV 323

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
             VS G+V+S++S P  MSHA++P E R+ RG+T+ L+R+SVG+E  +DL  D ++AL+
Sbjct: 324 FAVSLGAVESILSYPATMSHAAMPKEEREKRGITDGLLRLSVGVEHADDLEHDFEQALK 382

Catalyzes the transformation of cystathionine into homocysteine. Also exhibits cysteine desulfhydrase activity in vitro, producing sulfide from cysteine.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/358 (41%), Positives = 213/358 (59%), Gaps = 47/358 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQP A ++  Y+Y+R+ NPTR ALE+L+ +L+  +    F+SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQPKAGQHTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSRKI----------------------------- 114
            AV  L  +G+ +V  DD+YGGT R++++ +                             
Sbjct: 79  TAVMMLFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAI 138

Query: 115 ------------------AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                             A++A   G LL+VDN+  +P   +PL LGADIV+HSATK++ 
Sbjct: 139 YIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLG 198

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+ G++    + L +EL+F+QN+ G  L P D W+ +RG+KT+ LR+E    NA+K
Sbjct: 199 GHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARK 258

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           IA FL +HP V+ + Y G   HPGHEL  +Q  G G ++SF  GS       +   K F+
Sbjct: 259 IASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDIGSEERVDAFLGNLKLFT 318

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           I  S G+V+SLIS+P  M+HASIP E R   G+T+ L+RISVGIED  DL+ D+ +AL
Sbjct: 319 IAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQAL 376

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 152/360 (42%), Positives = 213/360 (59%), Gaps = 49/360 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  L   G+ I+  DD+YGGT RL+ +                               
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 113 ----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                           +I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 275
           IAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE   YF
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYF 318

Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  287 bits (734), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 152/360 (42%), Positives = 213/360 (59%), Gaps = 49/360 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  L   G+ I+  DD+YGGT RL+ +                               
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDLSNLDDLKAAFKEETKAI 139

Query: 113 ----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                           +I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++    + LA E+ FLQN+ G+ L P D W+  RG+KT+ALR+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQK 259

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 275
           IAEFL +   V KV Y GL  HPGHE+   Q    G ++SF LT   A+ K  VE   YF
Sbjct: 260 IAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELTDENAV-KDFVENLSYF 318

Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++D+ +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  281 bits (720), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/360 (41%), Positives = 212/360 (58%), Gaps = 49/360 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T+KQ    +   Y+Y+RSGNPTR ALE L+A L+   +   F+SG+A +
Sbjct: 20  GAVSVPIYQTSTYKQNGLGQPKEYEYSRSGNPTRHALEELIADLEGGVQGFAFSSGLAGI 79

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  L   G+ I+  DD+YGGT RL+ +                               
Sbjct: 80  HAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIYDLVDLSNLEDLKAAFKAETKAV 139

Query: 113 ----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                           +I+ +A AH AL LVDN+  +P L +P+ LGADIV+HSATK++ 
Sbjct: 140 YFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLG 199

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++      LA E+ FLQN+ G+ L P D W+  RG+KT+A R+E    NAQK
Sbjct: 200 GHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQK 259

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYF 275
           IAEFL +   V KV Y GL  H GHE+   Q    G ++SF LT   A+ K+ VE  +YF
Sbjct: 260 IAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELTDENAV-KNFVENLRYF 318

Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           ++  S G V+SLI +P  M+HASIP E+R+  G+ + L+R+SVG+E + DL++DL +AL 
Sbjct: 319 TLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEALE 378

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  277 bits (709), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/358 (41%), Positives = 207/358 (57%), Gaps = 47/358 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  LL +G+ ++ GDD+YGGT RL ++                               
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSCTIIDTSDISQIKKAIKPNTKAL 138

Query: 113 ----------KIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                     KI ++A        HG L +VDN+  +P    PL LGADIV HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLG 198

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           +AEFL  HP+V++V Y GLP HP +EL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFI 318

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           +  S G V+SL+ +P FM+HA IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  277 bits (709), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 146/358 (40%), Positives = 208/358 (58%), Gaps = 47/358 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +   +  Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGHHKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  LL +G+ ++ GDD+YGGT RL ++                               
Sbjct: 79  HAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 113 ----------KIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                     KI ++A        HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR++  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMQAHQKNALC 258

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           +AEFL  HP+V++V Y GLP HP +EL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEATPFVESLKLFI 318

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           +  S G V+SL+ +P FM+HA IP   R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGVPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
255543511	467	cystathionine beta-lyase, putative [Rici	0.985	0.715	0.782	1e-173
356571951	467	PREDICTED: cystathionine beta-lyase, chl	0.985	0.715	0.774	1e-171
363806786	468	cystathionine beta-lyase, chloroplastic-	0.985	0.713	0.776	1e-170
449452983	459	PREDICTED: cystathionine beta-lyase, chl	0.988	0.729	0.767	1e-170
449519446	409	PREDICTED: cystathionine beta-lyase, chl	0.988	0.819	0.767	1e-169
225441258	466	PREDICTED: cystathionine beta-lyase, chl	0.985	0.716	0.763	1e-168
15230203	464	cystathionine beta-lyase [Arabidopsis th	1.0	0.730	0.746	1e-167
30694565	449	cystathionine beta-lyase [Arabidopsis th	1.0	0.755	0.746	1e-167
297820494	449	cystathionine beta-lyase [Arabidopsis ly	1.0	0.755	0.746	1e-166
8439539	471	cystathionine beta-lyase [Solanum tubero	0.985	0.709	0.761	1e-166

>gi|255543511|ref|XP_002512818.1| cystathionine beta-lyase, putative [Ricinus communis] gi|223547829|gb|EEF49321.1| cystathionine beta-lyase, putative [Ricinus communis]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/381 (78%), Positives = 321/381 (84%), Gaps = 47/381 (12%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
            EP +ST+LMNF N+FDPY A+S PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL
Sbjct: 86  REPNISTILMNFENKFDPYDAMSMPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 145

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------- 111
           AKLDKADRA CFTSGMAALAAVTHL+ TG+EI+AGDD+YGG+DRLLS             
Sbjct: 146 AKLDKADRAFCFTSGMAALAAVTHLVETGQEIIAGDDIYGGSDRLLSQVTPKSGVVVKRV 205

Query: 112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS 137
                                             RKIA++AH HGAL+LVDNSIMSPVLS
Sbjct: 206 NTSNLDEVASAIGPWTKLVWLESPTNPRQQISDIRKIAKIAHTHGALVLVDNSIMSPVLS 265

Query: 138 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 197
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA++LYFLQNAEGSGLAPFDCWICL
Sbjct: 266 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLARDLYFLQNAEGSGLAPFDCWICL 325

Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
           RG+KTMALRVEKQQDNAQKIAEFLA+HPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSF
Sbjct: 326 RGIKTMALRVEKQQDNAQKIAEFLATHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSF 385

Query: 258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 317
           LTGSL LSKH+VETTKYFSITVSFGSVKSLISMPCFMSHASIP +VR+ARGLTEDL+RIS
Sbjct: 386 LTGSLELSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPADVREARGLTEDLIRIS 445

Query: 318 VGIEDVNDLISDLDKALRTGP 338
           VGIEDVNDLI+DLD ALRTGP
Sbjct: 446 VGIEDVNDLIADLDHALRTGP 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571951|ref|XP_003554134.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/381 (77%), Positives = 321/381 (84%), Gaps = 47/381 (12%)

Query: 6   EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLA 65
           EP +ST++MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLA
Sbjct: 87  EPSISTMVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLA 146

Query: 66  KLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------- 111
           KLDKADRALCFTSGMAAL+AV  L+GTGEEIV GDD+YGG+DRLLS              
Sbjct: 147 KLDKADRALCFTSGMAALSAVVRLVGTGEEIVTGDDVYGGSDRLLSQVVPRTGIVVKRVN 206

Query: 112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR 138
                                            RKI+EMAH+HGAL+LVDNSIMSPVLS+
Sbjct: 207 TCDLDEVAAAIGLRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDNSIMSPVLSQ 266

Query: 139 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 198
           PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KE+YFLQNAEGSGLAPFDCW+CLR
Sbjct: 267 PLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLEKEMYFLQNAEGSGLAPFDCWLCLR 326

Query: 199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL 258
           G+KTMALR+EKQQDNAQKIAEFLASHPRVK+VNYAGLP HPG +LHYSQAKGAGSVLSFL
Sbjct: 327 GIKTMALRIEKQQDNAQKIAEFLASHPRVKEVNYAGLPGHPGRDLHYSQAKGAGSVLSFL 386

Query: 259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 318
           TGSLALSKH+VETTKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRISV
Sbjct: 387 TGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISV 446

Query: 319 GIEDVNDLISDLDKALRTGPL 339
           GIEDVNDLI+DL  ALRTGPL
Sbjct: 447 GIEDVNDLIADLGNALRTGPL 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806786|ref|NP_001242026.1| cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|255641003|gb|ACU20781.1| unknown [Glycine max]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 296/381 (77%), Positives = 320/381 (83%), Gaps = 47/381 (12%)

Query: 6   EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLA 65
           EP +STL+MNF ++FDP+GA+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLA
Sbjct: 88  EPSISTLVMNFESKFDPFGAISTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLA 147

Query: 66  KLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------- 112
           KLDKADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+ GG+DRLLS+             
Sbjct: 148 KLDKADRALCFTSGMAALSAVVRLVGTGEEIVAGDDVSGGSDRLLSQVVPRTGIVVKRAN 207

Query: 113 ----------------------------------KIAEMAHAHGALLLVDNSIMSPVLSR 138
                                             KI+E+AH+HGAL+LVDNSIMSPVLSR
Sbjct: 208 TCDLNEVAAAIGPKTKLVWLESPTNPWLQISDIQKISEIAHSHGALVLVDNSIMSPVLSR 267

Query: 139 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 198
           PLELGADIVMHSATKFIAGHSD+MAGVLAVKGE+L KELYFLQNAEGSGLAPFDCW+CLR
Sbjct: 268 PLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCLR 327

Query: 199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL 258
           G+KTMALR+EKQQDNAQKIAEFLASHPRVKKVNYAGLP HPG +LHYSQAKGAGSVLSFL
Sbjct: 328 GIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFL 387

Query: 259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 318
           TGSL LSKH+VETTKYFSITVSFGSVKS ISMPCFMSHASIP  VR+ARGLTEDLVRISV
Sbjct: 388 TGSLELSKHIVETTKYFSITVSFGSVKSPISMPCFMSHASIPAAVREARGLTEDLVRISV 447

Query: 319 GIEDVNDLISDLDKALRTGPL 339
           GIEDVNDLI+DLD ALRTGPL
Sbjct: 448 GIEDVNDLIADLDNALRTGPL 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452983|ref|XP_004144238.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 293/382 (76%), Positives = 320/382 (83%), Gaps = 47/382 (12%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 77  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 136

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------ 111
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS            
Sbjct: 137 LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 196

Query: 112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL 136
                                              R IA MAH HGAL+LVDNSI+SPVL
Sbjct: 197 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIATMAHKHGALVLVDNSILSPVL 256

Query: 137 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 196
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 257 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 316

Query: 197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 256
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLS
Sbjct: 317 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLS 376

Query: 257 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
           FLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RI
Sbjct: 377 FLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRI 436

Query: 317 SVGIEDVNDLISDLDKALRTGP 338
           SVGIEDVNDLI+DLD ALRTGP
Sbjct: 437 SVGIEDVNDLIADLDNALRTGP 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519446|ref|XP_004166746.1| PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cucumis sativus]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/382 (76%), Positives = 320/382 (83%), Gaps = 47/382 (12%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESL 63
           EEEP +ST++MNF ++FDPYGA+STPLYQTATFKQP+ATENGPYDYTRSGNPTRDALESL
Sbjct: 27  EEEPSISTMIMNFESKFDPYGAVSTPLYQTATFKQPTATENGPYDYTRSGNPTRDALESL 86

Query: 64  LAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------ 111
           LA+L+KADRALCFTSGMAAL+AV  L+GTGEEIVAGDD+YGG+DRLLS            
Sbjct: 87  LAELEKADRALCFTSGMAALSAVAQLVGTGEEIVAGDDIYGGSDRLLSQVIPRRGIVVKR 146

Query: 112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL 136
                                              R IA MAH HGAL+LVDNSI+SPVL
Sbjct: 147 VNTSDLDEVSSAIGPLTKLVWLESPTNPRLQISDIRTIAIMAHKHGALVLVDNSILSPVL 206

Query: 137 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 196
           SRPL+LGADIVMHSATKFIAGHSDVMAGVLAV+GERLAKELYFLQNAEGSGLAPFDCWIC
Sbjct: 207 SRPLDLGADIVMHSATKFIAGHSDVMAGVLAVRGERLAKELYFLQNAEGSGLAPFDCWIC 266

Query: 197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 256
           LRG+KT+ALRVEKQQ+NAQKIAEFL +HPRVKKV YAGLP HPG  LHYSQAKGAG+VLS
Sbjct: 267 LRGIKTLALRVEKQQENAQKIAEFLYTHPRVKKVYYAGLPTHPGRSLHYSQAKGAGAVLS 326

Query: 257 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
           FLTGSLALSKH+VE+TKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDL+RI
Sbjct: 327 FLTGSLALSKHIVESTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLIRI 386

Query: 317 SVGIEDVNDLISDLDKALRTGP 338
           SVGIEDVNDLI+DLD ALRTGP
Sbjct: 387 SVGIEDVNDLIADLDNALRTGP 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441258|ref|XP_002274313.1| PREDICTED: cystathionine beta-lyase, chloroplastic [Vitis vinifera] gi|297739922|emb|CBI30104.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/381 (76%), Positives = 315/381 (82%), Gaps = 47/381 (12%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP +ST+L+N+ N+ DP+ A+S PLYQTATFKQPSATENGPYDYTRSGNPTRD LESLL
Sbjct: 85  KEPSISTMLINYENKSDPFDAVSPPLYQTATFKQPSATENGPYDYTRSGNPTRDVLESLL 144

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------- 111
           A+LDKADRA CFTSGMAALAAVTHL+  GEEIVAG+D+YGG+DRLLS             
Sbjct: 145 ARLDKADRAFCFTSGMAALAAVTHLIAPGEEIVAGEDIYGGSDRLLSQVTTKRGIVVKRV 204

Query: 112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS 137
                                             RKI EMAH HGALLLVDNSIMSPVLS
Sbjct: 205 DTTNLEEVASAIGPMTKLVWLESPTNPRLQISDIRKITEMAHTHGALLLVDNSIMSPVLS 264

Query: 138 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 197
           +PLELGADIVMHSATKFIAGHSDVMAGVLAVKGE LAK+LYFLQNAEGSGLAPFDCWICL
Sbjct: 265 QPLELGADIVMHSATKFIAGHSDVMAGVLAVKGESLAKDLYFLQNAEGSGLAPFDCWICL 324

Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
           RG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNYAGLP+HPG  LHYSQAKGAGSVLSF
Sbjct: 325 RGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYAGLPDHPGRSLHYSQAKGAGSVLSF 384

Query: 258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 317
           LTGSL  SK++VETTKYFSITVSFGSVKSLISMPCFMSHASIP  VR+ARGLTEDLVRIS
Sbjct: 385 LTGSLEFSKYIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRIS 444

Query: 318 VGIEDVNDLISDLDKALRTGP 338
           VGIED+NDLI+DLD ALRTGP
Sbjct: 445 VGIEDINDLIADLDYALRTGP 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230203|ref|NP_191264.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|1708993|sp|P53780.1|METC_ARATH RecName: Full=Cystathionine beta-lyase, chloroplastic; Short=CBL; AltName: Full=Beta-cystathionase; AltName: Full=Cysteine lyase; Flags: Precursor gi|13786771|pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|13786772|pdb|1IBJ|C Chain C, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana gi|704397|gb|AAA99176.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|6911875|emb|CAB72175.1| CYSTATHIONINE BETA-LYASE PRECURSOR (CBL) [Arabidopsis thaliana] gi|222423596|dbj|BAH19767.1| AT3G57050 [Arabidopsis thaliana] gi|332646082|gb|AEE79603.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 319/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694565|ref|NP_850712.1| cystathionine beta-lyase [Arabidopsis thaliana] gi|17381124|gb|AAL36374.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|21281081|gb|AAM45099.1| putative cystathionine beta-lyase precursor CBL [Arabidopsis thaliana] gi|332646084|gb|AEE79605.1| cystathionine beta-lyase [Arabidopsis thaliana]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 319/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKI+EMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 243

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 363

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 364 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 423

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 424 VRISAGIEDVDDLISDLDIAFKTFPL 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820494|ref|XP_002878130.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata] gi|297323968|gb|EFH54389.1| cystathionine beta-lyase [Arabidopsis lyrata subsp. lyrata]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 317/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 64  MNIKEEASVSTLLVNLDNKFDPFEAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 123

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 124 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 183

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKIAEMAHA GAL+LVDNSIMS
Sbjct: 184 VKRVNTTNLDEVAAAIGPRTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 243

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 244 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 303

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 304 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 363

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 364 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 423

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIED +DLISDLD A  T PL
Sbjct: 424 VRISAGIEDADDLISDLDIAFNTCPL 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439539|gb|AAF74980.1|AF082890_1 cystathionine beta-lyase [Solanum tuberosum]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/381 (76%), Positives = 316/381 (82%), Gaps = 47/381 (12%)

Query: 5   EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLL 64
           +EP VST+LMNFSN+FDPYGALSTPLYQT+TFKQPSATENG YDYTRSGNPTRDALE LL
Sbjct: 90  KEPSVSTMLMNFSNDFDPYGALSTPLYQTSTFKQPSATENGQYDYTRSGNPTRDALEKLL 149

Query: 65  AKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------- 111
           A+L+KADRA CFTSGMAALAAVT L+  GEEIVAGDD+YGG+DRLLS             
Sbjct: 150 AELEKADRAFCFTSGMAALAAVTRLVKAGEEIVAGDDIYGGSDRLLSQVVPKAGIVVKRV 209

Query: 112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS 137
                                             RKIA++AHAHGAL+LVDNSIMSPVLS
Sbjct: 210 DTTNLDEVASVIKPWTKLIWLESPTNPRQQICDIRKIAKIAHAHGALVLVDNSIMSPVLS 269

Query: 138 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 197
            PLELGADIVMHSATKFI+GHSD+MAGVLAV+GE LAKE+YFLQNAEG+GLAPFDCW+CL
Sbjct: 270 HPLELGADIVMHSATKFISGHSDLMAGVLAVRGESLAKEVYFLQNAEGAGLAPFDCWLCL 329

Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
           RG+KTMALRVEKQQ+NAQKIAEFL+SHPRVKKVNY GL +HPG  LH+SQA GAGSVLSF
Sbjct: 330 RGIKTMALRVEKQQENAQKIAEFLSSHPRVKKVNYPGLLDHPGRSLHFSQATGAGSVLSF 389

Query: 258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 317
           LTGSLALSKHV E TKYFSITVSFGSVKSLIS+PCFMSHASIPVEVR+ARGLTEDLVRIS
Sbjct: 390 LTGSLALSKHVAEATKYFSITVSFGSVKSLISLPCFMSHASIPVEVREARGLTEDLVRIS 449

Query: 318 VGIEDVNDLISDLDKALRTGP 338
           VGIEDVNDLI DLD AL+TGP
Sbjct: 450 VGIEDVNDLIDDLDYALKTGP 470

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2080605	464	CBL "cystathionine beta-lyase"	0.672	0.491	0.864	3.7e-146
ASPGD|ASPL0000069608	458	metG [Emericella nidulans (tax	0.646	0.478	0.551	1.3e-84
CGD|CAL0004561	404	orf19.2092 [Candida albicans (	0.660	0.554	0.541	1.9e-83
POMBASE|SPCC11E10.01	390	SPCC11E10.01 "cystathionine be	0.628	0.546	0.546	7.5e-78
DICTYBASE|DDB_G0269122	387	cysA "cystathionine gamma-lyas	0.657	0.576	0.491	1.4e-74
TIGR_CMR|GSU_0945	378	GSU_0945 "cystathionine beta-l	0.648	0.582	0.463	3.7e-74
TIGR_CMR|GSU_0944	377	GSU_0944 "cystathionine beta-l	0.648	0.583	0.463	5.3e-73
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.657	0.591	0.484	1.4e-72
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.657	0.591	0.484	1.4e-72
TIGR_CMR|BA_4481	387	BA_4481 "cystathionine beta-ly	0.657	0.576	0.475	2.6e-71

TAIR|locus:2080605 CBL "cystathionine beta-lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1026 (366.2 bits), Expect = 3.7e-146, Sum P(2) = 3.7e-146
 Identities = 197/228 (86%), Positives = 217/228 (95%)

Query:   112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             RKI+EMAHA GAL+LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE
Sbjct:   237 RKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
             +LAKE+YFLQN+EGSGLAPFDCW+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV 
Sbjct:   297 KLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVY 356

Query:   232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 291
             YAGLP+HPGH LH+SQAKGAGSV SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMP
Sbjct:   357 YAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMP 416

Query:   292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL 339
             CFMSHASIP EVR+ARGLTEDLVRIS GIEDV+DLISDLD A +T PL
Sbjct:   417 CFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL 464

GO:0003824 "catalytic activity" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA;IMP

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=TAS

ASPGD|ASPL0000069608 metG [Emericella nidulans (taxid:162425)]

 Score = 618 (222.6 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 123/223 (55%), Positives = 167/223 (74%)

Query:   114 IAEMAH-AH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             IA  +H A+   L++VDN++MSP+L  PLELGAD+V  S TK+++GH DVMAGV+AV   
Sbjct:   189 IAAASHEANPNCLVIVDNTMMSPLLLSPLELGADVVYESGTKYLSGHHDVMAGVIAVNDP 248

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
              L + LYF  NA G GL+PFD W+ +RGVKT+ +R+++QQ NAQ+IAEFL SH    KV 
Sbjct:   249 ALGERLYFPINASGCGLSPFDSWLLMRGVKTLKVRMDQQQANAQRIAEFLESHGF--KVR 306

Query:   232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 291
             Y GL  HP ++LH+S A+GAG+VLSF TG +++S+ +V   K ++I+VSFG V SLIS+P
Sbjct:   307 YPGLRSHPQYDLHHSMARGAGAVLSFETGDVSVSERIVANAKLWAISVSFGCVNSLISLP 366

Query:   292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             C MSHASI  + R+ R + EDL+R+ VGIEDV+DLI DL +A+
Sbjct:   367 CRMSHASIDAKTRKERAMPEDLIRLCVGIEDVDDLIDDLRRAV 409

GO:0004121 "cystathionine beta-lyase activity" evidence=RCA;IMP;IDA

GO:0006555 "methionine metabolic process" evidence=RCA

GO:0071266 "'de novo' L-methionine biosynthetic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

CGD|CAL0004561 orf19.2092 [Candida albicans (taxid:5476)]

 Score = 604 (217.7 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
 Identities = 124/229 (54%), Positives = 164/229 (71%)

Query:   112 RKIAEMAH-AHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK 169
             + IA+ AH A+  +++V DN++MSPVL  PL+LG DI   SATK++ GH D+MAGV+A +
Sbjct:   158 KSIADHAHKANRDIVVVFDNTMMSPVLMTPLDLGVDIQYESATKYLNGHHDIMAGVIATR 217

Query:   170 GERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK 229
                LA++LY++ N+ G GL+PFDCW+  RG+KT+A+RVEKQQ N  +IA+FL +     K
Sbjct:   218 SSSLAEQLYYIINSTGCGLSPFDCWLLSRGLKTLAIRVEKQQQNCIRIAKFLENIGF--K 275

Query:   230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS 289
             V Y GL  HP +ELH S   G G+VLSF TGS+ LS+ +VE T  F I VSFG V SLIS
Sbjct:   276 VRYPGLKSHPQYELHSSMCSGYGAVLSFETGSVRLSEKIVENTDIFGIAVSFGCVNSLIS 335

Query:   290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL-RTG 337
             MPC MSHASI  + R+ R   EDL+R+ +GIE+ +DLI DL KAL R+G
Sbjct:   336 MPCKMSHASIDAKTREEREFPEDLIRLCIGIENCDDLIDDLTKALLRSG 384

GO:0005777 "peroxisome" evidence=IEA

GO:0019346 "transsulfuration" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0004121 "cystathionine beta-lyase activity" evidence=IEA

POMBASE|SPCC11E10.01 SPCC11E10.01 "cystathionine beta-lyase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 586 (211.3 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
 Identities = 118/216 (54%), Positives = 162/216 (75%)

Query:   120 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF 179
             A  ALL++DN+++SPVL  PL+ G DIV  SATK+++GH D+M GV+A K + +AK ++F
Sbjct:   169 AKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGVIATKSDEIAKSVFF 228

Query:   180 LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL-PEH 238
               NA G+ +APF+C++ LRG+KTM LRVE+ Q NA +IA+FL S  +  +VN+ GL P+ 
Sbjct:   229 NINAMGAAMAPFECFLLLRGIKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDA 286

Query:   239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 298
                 + YS A+G G+V+S  TG + +SK +V TTK F I+VSFG+V SLISMP +MSHAS
Sbjct:   287 KSTAIFYSFARGPGAVMSVFTGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHAS 346

Query:   299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             I  EVR ARGL+EDL+RI VGIE+V+DL +DL+ AL
Sbjct:   347 IKKEVRDARGLSEDLIRICVGIENVDDLKADLENAL 382

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005777 "peroxisome" evidence=ISS

GO:0019279 "L-methionine biosynthetic process from L-homoserine via cystathionine" evidence=IC

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

DICTYBASE|DDB_G0269122 cysA "cystathionine gamma-lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 576 (207.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 110/224 (49%), Positives = 155/224 (69%)

Query:   112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             + +A+  H+ GA L+VDN+ MSP    PL+LGADIVMHS TK+I GHSD + GVLA   +
Sbjct:   161 KAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNND 220

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
              L  +L FLQN+ G+  +PFDC++ LRG+KT+ +R+E  Q NA  I  FL  HP+V++V 
Sbjct:   221 ELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVI 280

Query:   232 YAGLPEHPGHELHYSQAKG-AGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM 290
             Y GLP HP HE+   Q KG  G V+ F+ GS+  S+  +E  K F++  S G V+SLI +
Sbjct:   281 YPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIEL 340

Query:   291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             P  M+HAS+P E R   G+++ L+R+SVGIED+NDL++D+ +AL
Sbjct:   341 PSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384

GO:0005615 "extracellular space" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0080146 "L-cysteine desulfhydrase activity" evidence=IEA

GO:0044540 "L-cystine L-cysteine-lyase (deaminating)" evidence=IEA

GO:0004123 "cystathionine gamma-lyase activity" evidence=IEA;ISS

GO:0006534 "cysteine metabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|GSU_0945 GSU_0945 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 550 (198.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 102/220 (46%), Positives = 152/220 (69%)

Query:   115 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA 174
             A +A   GA+ LVDN+ M+P L RPL+LG D+V+HS TKF+ GHSDV+ G   V+   L 
Sbjct:   157 ARLARERGAITLVDNTFMTPYLQRPLDLGCDVVLHSGTKFLNGHSDVVCGFAVVRDPELG 216

Query:   175 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 234
             + + F+QNA G+ L P D W+ LRG+KT+ +R+E+ Q  A KIA +LA   RV +V Y G
Sbjct:   217 QRIRFIQNAFGAILGPQDSWLVLRGIKTLRVRMEESQAGAVKIANWLAGEKRVSRVFYPG 276

Query:   235 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 294
             LP+HPGH++H  Q+ G G+VLSF   ++  ++ ++E  +  +  VS G V+S+IS P  M
Sbjct:   277 LPDHPGHDIHGRQSSGPGAVLSFTLDTVETTRRLLEGMRLAAFAVSLGGVESIISYPARM 336

Query:   295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             SHA++P   R ARG+ + LVR+SVG+ED +DL++++D+ +
Sbjct:   337 SHAAMPPAERAARGIGDTLVRLSVGLEDADDLLAEMDRLI 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0944 GSU_0944 "cystathionine beta-lyase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 550 (198.7 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 102/220 (46%), Positives = 158/220 (71%)

Query:   114 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL 173
             ++ +    G L +VDN+ ++P L RPL+LGADI ++S TK+++GH+D ++G++ VK   L
Sbjct:   156 LSTLCRERGLLCIVDNTFLTPYLLRPLDLGADITVYSGTKYLSGHNDTVSGLVVVKEPAL 215

Query:   174 AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 233
             A+ +YFLQN+ G+ L P D W+ +RG+KT+++R+++QQ+NA +IAE+LA HPRV +V Y 
Sbjct:   216 AERVYFLQNSVGAVLGPQDAWLTIRGMKTLSVRLDRQQENAGRIAEWLARHPRVPRVFYP 275

Query:   234 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF 293
             GLP HPGHEL   QA+G G++++F     AL + ++  T+  S   S G V++LI+ P  
Sbjct:   276 GLPGHPGHELLARQARGFGAMIAFEVDDKALVERLLLKTELISFAESLGGVETLITFPQV 335

Query:   294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
              +HA IP EVR+  G+ + L+R+SVGIED +DLI+DL +A
Sbjct:   336 QTHADIPPEVRERLGINDVLLRLSVGIEDADDLIADLSRA 375

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 558 (201.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 108/223 (48%), Positives = 157/223 (70%)

Query:   112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             +KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ GHSDV+AG++ V   
Sbjct:   154 KKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP 213

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
             +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ IAEFL +HP+V KV 
Sbjct:   214 QLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVY 273

Query:   232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 291
             Y GL  H  HEL   QA G G+++SF   S      V+E  +YF++  S G+V+SLIS+P
Sbjct:   274 YPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFTLAESLGAVESLISIP 333

Query:   292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
               M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   334 SQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 558 (201.5 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 108/223 (48%), Positives = 157/223 (70%)

Query:   112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             +KI+ +A   G L ++DN+ M+P    P+ LGADIV+HSATK++ GHSDV+AG++ V   
Sbjct:   154 KKISTLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSP 213

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
             +LA++L+F+QN+ G  L P D ++ LRG+KT+ +R+E+ + N++ IAEFL +HP+V KV 
Sbjct:   214 QLAEDLHFVQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVY 273

Query:   232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 291
             Y GL  H  HEL   QA G G+++SF   S      V+E  +YF++  S G+V+SLIS+P
Sbjct:   274 YPGLASHQNHELATEQANGFGAIISFDVDSEETLNKVLERLQYFTLAESLGAVESLISIP 333

Query:   292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
               M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct:   334 SQMTHASIPADRRKELGITDTLIRISVGIEDGEDLIEDLAQAL 376

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4481 BA_4481 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 527 (190.6 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
 Identities = 106/223 (47%), Positives = 151/223 (67%)

Query:   112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             R ++ +A + GAL  VDN+ ++P+  +PL+LGAD+V+HSATKFIAGHSDV AG+  VK  
Sbjct:   156 RAVSTLAKSIGALTFVDNTFLTPLFQKPLDLGADVVLHSATKFIAGHSDVTAGLAVVKDA 215

Query:   172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
              LA++L FLQNA G+ L P DC + LRG+KT+ +R+E    NA KIA++L  H +++ V 
Sbjct:   216 ELAQKLGFLQNAFGAILGPQDCSLVLRGLKTLHVRLEHSAANANKIAQYLQEHSKIQNVY 275

Query:   232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP 291
             Y GL  H G ++  SQA  AG+VLSF   S    +  +   K     VS G+V+S++S P
Sbjct:   276 YPGLQTHLGFDIQQSQATSAGAVLSFTLQSEDALRQFLSKVKLPVFAVSLGAVESILSYP 335

Query:   292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
               MSHA++  E R  RG++  L+R+SVG+E+V+DLISD + AL
Sbjct:   336 AKMSHAALSQEARDERGISNSLLRLSVGLENVDDLISDFENAL 378

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZMW7	METB_HELPJ	2, ., 5, ., 1, ., 4, 8	0.3928	0.9351	0.8342	yes	no
Q1M0P5	METB_HELPX	2, ., 5, ., 1, ., 4, 8	0.4078	0.9174	0.8184	yes	no
P53780	METC_ARATH	4, ., 4, ., 1, ., 8	0.7461	1.0	0.7306	yes	no
P46807	METB_MYCLE	2, ., 5, ., 1, ., 4, 8	0.3825	0.9528	0.8324	yes	no
Q55DV9	CGL_DICDI	4, ., 4, ., 1, ., 1	0.425	0.9174	0.8036	yes	no
P44502	METB_HAEIN	2, ., 5, ., 1, ., 4, 8	0.3509	0.9262	0.8509	yes	no
P31373	CYS3_YEAST	4, ., 4, ., 1, ., 1	0.3717	0.9882	0.8502	yes	no
P56069	METB_HELPY	2, ., 5, ., 1, ., 4, 8	0.4106	0.9174	0.8184	yes	no
P66876	METB_MYCBO	2, ., 5, ., 1, ., 4, 8	0.3783	0.9557	0.8350	yes	no
P66875	METB_MYCTU	2, ., 5, ., 1, ., 4, 8	0.3783	0.9557	0.8350	yes	no
Q83A83	METC_COXBU	4, ., 4, ., 1, ., 8	0.3819	0.9616	0.8423	yes	no
O94350	CBL_SCHPO	4, ., 4, ., 1, ., 8	0.4574	0.9557	0.8307	yes	no
P0A4K2	METC_LACLA	4, ., 4, ., 1, ., 8	0.4222	0.9174	0.8184	yes	no
A2RM21	METC_LACLM	4, ., 4, ., 1, ., 8	0.4222	0.9174	0.8184	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVI.1340.1	annotation not avaliable (462 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.2485.1.1	Predicted protein (809 aa)	•					•	•		0.679
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)	•					•	•		0.622
	gw1.130.69.1	N-acetyl-gamma-glutamyl-phosphate reductase (EC-1.2.1.38) (352 aa)	•						•		0.554
	gw1.7135.1.1	hypothetical protein (173 aa)	•					•	•		0.534
	eugene3.121520001	Predicted protein (251 aa)	•						•		0.493
	gw1.XII.1858.1	anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)							•		0.477
	gw1.V.3049.1	2-isopropylmalate synthase (EC-2.3.3.13) (545 aa)							•		0.468
	estExt_fgenesh4_pg.C_280257	threonine deaminase (EC-4.3.1.19) (543 aa)	•						•		0.465
	eugene3.134660001	Predicted protein (264 aa)							•		0.461
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)							•		0.455

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	0.0
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	0.0
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-160
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-147
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-137
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-122
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-117
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	1e-110
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	1e-104
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	8e-97
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	3e-94
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	3e-91
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-88
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	2e-87
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	2e-85
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	6e-83
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	2e-82
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	7e-82
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	1e-81
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	3e-81
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	5e-80
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	1e-78
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	2e-77
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	8e-77
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	1e-75
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	2e-75
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	2e-70
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	1e-68
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	5e-68
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	8e-67
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	6e-66
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	8e-66
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	6e-65
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	2e-63
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	5e-61
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	3e-57
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	6e-57
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	2e-54
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	2e-49
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	1e-42
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	1e-40
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	2e-40
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	2e-39
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	4e-39
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	1e-30
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	3e-30
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-04
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	3e-04
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	0.001
cd00613	398	cd00613, GDC-P, Glycine cleavage system P-protein,	0.001
COG0403	450	COG0403, GcvP, Glycine cleavage system protein P (	0.003
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	0.003
PRK00451	447	PRK00451, PRK00451, glycine dehydrogenase subunit	0.004

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  654 bits (1689), Expect = 0.0
 Identities = 291/386 (75%), Positives = 320/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKIAEMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMS 258

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A RTGPL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFRTGPL 464

Length = 464

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  544 bits (1403), Expect = 0.0
 Identities = 253/378 (66%), Positives = 288/378 (76%), Gaps = 47/378 (12%)

Query: 9   VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +STLL+N  N+ DPY A S P+YQTATFKQP A ENGPYDYTRSGNPTR ALESLLAKLD
Sbjct: 1   LSTLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLD 60

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------- 111
           KADRA  F+SGMAAL  +T LL  G+EI+AGDDLYGGTDRLL+                 
Sbjct: 61  KADRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTD 120

Query: 112 ------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLE 141
                                         RKI+EMAHA  AL++VDN++MSP+L  PLE
Sbjct: 121 LDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLE 180

Query: 142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK 201
           LGADIV HSATKF+AGHSDVMAGVLAVKGE +AK++YFLQN+ GSGLAPFDCW+ LRG+K
Sbjct: 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK 240

Query: 202 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS 261
           T+A+R+EKQQ+NA+ IA FL++HPRVKKV YAGLP HPG  LH+SQAKGAGSVLSF TGS
Sbjct: 241 TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS 300

Query: 262 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 321
           +ALSK +VE TK FSITVSFGSV SLISMPCFMSHASIP EVR+ RGL EDLVR+SVGIE
Sbjct: 301 VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE 360

Query: 322 DVNDLISDLDKALRTGPL 339
           DV+DLISDLD A  T P 
Sbjct: 361 DVDDLISDLDIAFVTAPA 378

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  453 bits (1167), Expect = e-160
 Identities = 183/381 (48%), Positives = 237/381 (62%), Gaps = 56/381 (14%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT-----ENGPYDYTRSGNPTRDALESL 63
           +TL ++     D   GA+  P+Y T+T+   +       E+G YDY+RSGNPTRDALE  
Sbjct: 1   ATLAVHAGQRPDRQTGAVVVPIYLTSTYVFDTVEALFAGEHGGYDYSRSGNPTRDALEER 60

Query: 64  LAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSR---------- 112
           +A L+  + AL F+SGMAA+ AA+  LL  G+ +VA DDLYGGT RL  +          
Sbjct: 61  IAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVT 120

Query: 113 -------------------------------------KIAEMAHAHGALLLVDNSIMSPV 135
                                                 IA++A  HGAL++VDN+  SP 
Sbjct: 121 FVDPSDLDALEAAIKPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPY 180

Query: 136 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAPFDCW 194
           L RPLELGADIV+HSATK+I GHSDV+ GV+ V G E LAK L FLQNA G+ L+PFD W
Sbjct: 181 LQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLSPFDAW 240

Query: 195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 254
           + LRG+KT+ LR+E+ Q+NA K+AEFL  HP+V+KV Y GLP HPGHEL   Q  G G +
Sbjct: 241 LLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMSGFGGM 300

Query: 255 LSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           LSF L G L  +   ++  K FS+  S G V+SLIS P  M+HASIP E R+A G+T+ L
Sbjct: 301 LSFELKGGLEAASKFLDNLKLFSLAESLGGVESLISHPATMTHASIPPEEREAAGITDGL 360

Query: 314 VRISVGIEDVNDLISDLDKAL 334
           +R+SVGIEDV+DLI+DL +AL
Sbjct: 361 IRLSVGIEDVDDLIADLKQAL 381

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  420 bits (1082), Expect = e-147
 Identities = 175/369 (47%), Positives = 223/369 (60%), Gaps = 57/369 (15%)

Query: 24  GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLDKADRALC 75
           GA++ P+YQT+TF  PS        A   G Y Y+R GNPT DALE  LA L+  + AL 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 76  FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSR---------------------- 112
           F+SGMAA++ V   LL  G+ +VA DDLYGGT RL  R                      
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 113 -------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 147
                                     IAE+AH HGALL+VDN+  +P L RPLELGADIV
Sbjct: 121 AIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADIV 180

Query: 148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 207
           +HSATK+I GHSDV+AGV+   GE L + L FL+ A G+ L+PFD W+ LRG+KT+ LR+
Sbjct: 181 VHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM 240

Query: 208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 266
           E+  +NA K+AEFL  HP+V++V Y GLP HP HEL   Q  G G V SF L G L  +K
Sbjct: 241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAK 300

Query: 267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 326
             +   K FS+ VS G V+SL+  P  M+H+ +P E R A G+T  LVR+SVGIEDV DL
Sbjct: 301 KFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDL 360

Query: 327 ISDLDKALR 335
           I+DL++AL+
Sbjct: 361 IADLEQALK 369

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  394 bits (1014), Expect = e-137
 Identities = 172/389 (44%), Positives = 232/389 (59%), Gaps = 59/389 (15%)

Query: 5   EEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNP 55
            +  ++T L++     D   GA++ P+Y T+TF   SA         E G YDY+R+GNP
Sbjct: 4   AKLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNP 63

Query: 56  TRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS--- 111
           TRDALE  LA+L+  + A  F+SGMAA+  A+  LL  G+ ++  DDLYGGT RL     
Sbjct: 64  TRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKIL 123

Query: 112 ---------------------------------------------RKIAEMAHAHGALLL 126
                                                          IA +A A+GAL++
Sbjct: 124 QKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVV 183

Query: 127 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G 185
           VDN+  +PVL RPLELGADIV+HSATK++ GHSDV+ GV+    E L + L+F Q A  G
Sbjct: 184 VDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG 243

Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
           + L+PFD W+ LRG++T+ALR+E+  +NA KIAEFLA HP+VKKV Y GLP HPGHEL  
Sbjct: 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAK 303

Query: 246 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ 305
            Q  G G + SF   +   +K  +++ K F +  S G V+SLIS P  M+HASIP+E R 
Sbjct: 304 RQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERA 363

Query: 306 ARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             G+T+ LVR+SVG+EDV DLI+DL++AL
Sbjct: 364 KAGITDGLVRLSVGLEDVEDLIADLEQAL 392

Length = 396

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  355 bits (912), Expect = e-122
 Identities = 153/358 (42%), Positives = 219/358 (61%), Gaps = 47/358 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQ +T+KQ +  ++  Y+Y+R+GNPTR ALE L+A L+       F SGMAA+
Sbjct: 19  GAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  L  +G+ ++  DD+YGGT R++++                               
Sbjct: 79  TAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAI 138

Query: 113 ----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                           KI+ +A   G L +VDN+ M+P    P+ LGADIV+HSATK++ 
Sbjct: 139 YVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLG 198

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++ V    LA++L+F+QN+ G  L P D W+ LRG+KT+ +R+E+ + N++ 
Sbjct: 199 GHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGIRMEEHETNSRA 258

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           IAEFL +HP V KV Y GLP HP HEL   QA G G ++SF  GS   +  V+E  +YF+
Sbjct: 259 IAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFT 318

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           +  S G+V+SLIS+P  M+HASIP + R+  G+T+ L+RISVGIED  DLI DL +AL
Sbjct: 319 LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQAL 376

Length = 377

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  344 bits (885), Expect = e-117
 Identities = 152/379 (40%), Positives = 224/379 (59%), Gaps = 48/379 (12%)

Query: 4   EEEPGVSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                + TLL++   + D   GA++ P+Y  +TF Q      G YDY+RSGNPTR+ALE 
Sbjct: 2   AMSYSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALED 61

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------- 111
           ++A+L+   +   F SGMAA++    LL  G+ ++  +D+YGGT R+++           
Sbjct: 62  IIAELEGGTKGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHT 121

Query: 112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPV 135
                                               R + ++A A G L  VDN+ ++P+
Sbjct: 122 FVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL 181

Query: 136 LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI 195
           L +PL+LGAD+V+HSATKF+AGHSDV+AG+  VK E LA++LYFLQN+ G+ L   DCW+
Sbjct: 182 LQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL 241

Query: 196 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL 255
            LRG+KT+ +R+E   + A KIA +L  HP+V+ V Y GL  H G ++  SQA  AG+VL
Sbjct: 242 VLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVL 301

Query: 256 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR 315
           SF   S    +  V   K     VS G+V+S++S P  MSHA++P E R  RG+T+ L+R
Sbjct: 302 SFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLR 361

Query: 316 ISVGIEDVNDLISDLDKAL 334
           +SVG+E+V+DLI+D ++AL
Sbjct: 362 LSVGLENVDDLIADFEQAL 380

Length = 390

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  326 bits (839), Expect = e-110
 Identities = 151/382 (39%), Positives = 209/382 (54%), Gaps = 62/382 (16%)

Query: 8   GVSTLLMNFSNEFDPY-GALSTPLYQTATFKQ--PSATENGPYDYTRSGNPTRDALESLL 64
           G +T  ++   E DP  GA++ P+Y ++TF Q        G Y+Y R+GNPTR ALE  L
Sbjct: 12  GFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGG-YEYARTGNPTRTALEEQL 70

Query: 65  AKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSR----------- 112
           A L+       F+SGMAA    +  +L  G+ IV  +D YGGT RL+ +           
Sbjct: 71  AALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130

Query: 113 ------------------------------------KIAEMAHAHGALLLVDNSIMSPVL 136
                                                +AE+AH  GA ++VDN+  SP L
Sbjct: 131 VDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYL 190

Query: 137 SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC 196
            +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD ++ 
Sbjct: 191 QQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLT 250

Query: 197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 256
           LRG+KT+A+R+++  +NA+ +AEFLA HP V  V Y GLP HPGHE+   Q +G G ++S
Sbjct: 251 LRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVS 310

Query: 257 F-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI---PVEVRQARGLTED 312
             L G    ++     TK F++  S G V+SLI  P  M+HAS     +EV       +D
Sbjct: 311 VRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLEV------PDD 364

Query: 313 LVRISVGIEDVNDLISDLDKAL 334
           LVR+SVGIEDV DL++DL++AL
Sbjct: 365 LVRLSVGIEDVADLLADLEQAL 386

Length = 388

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  309 bits (793), Expect = e-104
 Identities = 148/358 (41%), Positives = 205/358 (57%), Gaps = 47/358 (13%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GA+S P+YQT+T++Q +      Y+Y+RSGNPTR ALE L+A L+   +   F SG+A +
Sbjct: 19  GAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGI 78

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
            AV  L  +G+ ++ GDD+YGGT RL  +                               
Sbjct: 79  HAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKAL 138

Query: 113 ----------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIA 156
                           + A +A  HG L +VDN+  +P    PL LGADIV+HS TK++ 
Sbjct: 139 YLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLG 198

Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+AG++    E LA+E+ F QNA G  L P D W+  RG+KT+ LR+E  Q NA  
Sbjct: 199 GHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALC 258

Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS 276
           +AEFL  HP+V+KV Y GLP HP HEL   Q +G   +LSF   + + +   VE+ K F 
Sbjct: 259 VAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFI 318

Query: 277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           +  S G V+SL+ +P FM+HA IP E R+A G+ + LVR+SVGIE   DL+ DL++A 
Sbjct: 319 LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAF 376

Length = 380

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  290 bits (745), Expect = 8e-97
 Identities = 135/374 (36%), Positives = 195/374 (52%), Gaps = 64/374 (17%)

Query: 9   VSTLLMNFSNEFDPY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
           + T L    N  D   G ++ P+Y +  ++     E+  +DY+R+GNPTR  LE  +A L
Sbjct: 5   IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADL 64

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------- 111
           +  D+    +SGMAA+  V  L  +G+E++   DLYGGT RL                  
Sbjct: 65  EGGDQGFACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTA 124

Query: 112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL 140
                                            IA++A  HG LL+VDN+  +PVL RPL
Sbjct: 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL 184

Query: 141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 200
           E GADIV+HSATK++ GH+DV+AG++  KG+ L + L + QNA G+ L+PFD W+ +RG+
Sbjct: 185 EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244

Query: 201 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG 260
           KT+ALR+ + ++NA+ IA FL   P V  V Y                 G G +LSF   
Sbjct: 245 KTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP----------------GRGGMLSFRLQ 288

Query: 261 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 320
                   +++ K  +   S G V+S I+ P   +HA IP E+R A G+   L+R SVGI
Sbjct: 289 DEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI 348

Query: 321 EDVNDLISDLDKAL 334
           E+V DLI+DL +A 
Sbjct: 349 ENVEDLIADLKQAF 362

Length = 366

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  284 bits (729), Expect = 3e-94
 Identities = 141/362 (38%), Positives = 204/362 (56%), Gaps = 49/362 (13%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YG +  P+Y + T+      E   YDY+RSGNPTRD L+  LA+L+    A+   +GM+A
Sbjct: 19  YGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSA 78

Query: 83  LAAV-THLLGTGEEIVAGDDLYGGTDRLLS------------------------------ 111
           +  V T LLG  + +VA  D YGGT RLL+                              
Sbjct: 79  IHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPK 138

Query: 112 -----------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 154
                             KI  +A A GA+++VDN+ +SP L  PL LGAD+V+HS TK+
Sbjct: 139 LVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKY 198

Query: 155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 214
           + GHSDV+AG +  K  ++A+EL +  N  G     FD ++ LRG++T+  R+  QQ NA
Sbjct: 199 LNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNA 258

Query: 215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 273
           Q I E+L + P VKK+ Y GLP+HPGHE+   Q KG G++LSF L G     +  +    
Sbjct: 259 QAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLS 318

Query: 274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
            F++  S G V+SLI+ P  M+HA++  E R   G+++ L+R+SVG+ED +DLI+DL++ 
Sbjct: 319 LFTLAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQG 378

Query: 334 LR 335
           LR
Sbjct: 379 LR 380

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  277 bits (710), Expect = 3e-91
 Identities = 140/373 (37%), Positives = 195/373 (52%), Gaps = 62/373 (16%)

Query: 21  DPYGALSTPLYQTATFKQP---SATENG-PYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           DPYG+L  P+Y TA F+Q      ++ G    Y+R  NPT   LE  LAKL+    AL F
Sbjct: 15  DPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAF 74

Query: 77  TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS------------------------ 111
            SGMAA++ +   LL  G+ +V   + YG T RLL                         
Sbjct: 75  NSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIK 134

Query: 112 ----------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 149
                                  ++A+ A   GA+L+VDN+  +P+L RPL  GAD V+H
Sbjct: 135 EGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVH 194

Query: 150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 209
           S TK+IAGH+DV+ GV         +EL+  +   G+ + PF+ ++ LRG+KT+ +R E+
Sbjct: 195 SLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLEVRFER 254

Query: 210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA------GSVLSF-LTGSL 262
           Q  NA  IAEFL+ HP+V +V Y GLP  P H +    AK        G V+SF + G  
Sbjct: 255 QCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGV----AKRLFGKDLYGGVVSFRVKGGR 310

Query: 263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 322
                 + + K    + S G V+SL + P   + + IP E R+A G+TEDLVR+SVG+ED
Sbjct: 311 DAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLED 370

Query: 323 VNDLISDLDKALR 335
           V DLI DLD+AL 
Sbjct: 371 VEDLIEDLDQALG 383

Length = 385

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  271 bits (696), Expect = 1e-88
 Identities = 138/422 (32%), Positives = 196/422 (46%), Gaps = 90/422 (21%)

Query: 4   EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-------NGP-YDYTRSGNP 55
               G  TL ++   E    GA + P+YQT ++                P   YTR  NP
Sbjct: 3   SANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNP 62

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS--- 111
           T D LE  +A L+    AL   SG AA+      L G G+ IV+   LYGGT  L S   
Sbjct: 63  TTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTL 122

Query: 112 --------------------------------------------RKIAEMAHAHGALLLV 127
                                                         IAE+AH HG  L+V
Sbjct: 123 KRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIV 182

Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL--------------------- 166
           DN+  +P L RP+E GADIV+HSATK+I GH   + GV+                     
Sbjct: 183 DNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPD 242

Query: 167 ----AVKGERLAKELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQ 215
                +          F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA 
Sbjct: 243 PSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENAL 302

Query: 216 KIAEFLASHPRVKKVNYAGLPEHPGHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTK 273
           K+AEFL +HP+V  VNY GL  HP H L      KGAG+VL+F + G     K  ++  K
Sbjct: 303 KVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALK 362

Query: 274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
            FS   + G  +SL+  P   +H  +  E + A G+T DL+R+SVGIED++D+I+DL++A
Sbjct: 363 LFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVGIEDIDDIIADLEQA 422

Query: 334 LR 335
           L 
Sbjct: 423 LE 424

Length = 426

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  266 bits (682), Expect = 2e-87
 Identities = 134/356 (37%), Positives = 201/356 (56%), Gaps = 61/356 (17%)

Query: 24  GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL 83
           GAL TPL+ + T++ P   ++  +DYTR+ NPTR  LE  LA ++ AD AL  +SGM+A+
Sbjct: 23  GALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAI 82

Query: 84  AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------------------- 112
                +   G ++VA  DLYGG+ R  ++                               
Sbjct: 83  VLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYI 142

Query: 113 --------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGH 158
                         K+A++AHA GA ++VDN+  SP+  RP+ELGADIV+HSATK+++GH
Sbjct: 143 ETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGH 202

Query: 159 SDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIA 218
           +DV+AGV+      L ++L++  N  G+ L+PFD ++ +RG+KT++LR+E+   NAQ++ 
Sbjct: 203 NDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVV 262

Query: 219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT 278
            FL   P VK+V Y G                 G ++SF         H++ + K F+  
Sbjct: 263 AFLKKSPAVKEVLYTGK----------------GGMISFKVADETRIPHILNSLKVFTFA 306

Query: 279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            S G V+SLI+ P   +HA IP EVR + GLT+DL+R+S+GIED  DLI+DL +AL
Sbjct: 307 ESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQAL 362

Length = 364

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  262 bits (672), Expect = 2e-85
 Identities = 130/371 (35%), Positives = 193/371 (52%), Gaps = 58/371 (15%)

Query: 22  PYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRA 73
           P+G  S  L+ T++F   SA E             Y+R  NPT    +  LA L+ A+  
Sbjct: 20  PFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEAC 79

Query: 74  LCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------- 111
           +   SGMAA LA V  LL  G+ +V+   L+G T  L                       
Sbjct: 80  VATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAW 139

Query: 112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 145
                                       +AE+AHA GALL+VDN   +P L +PL+LGAD
Sbjct: 140 RAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGAD 199

Query: 146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL 205
           +V+HSATK++ G   V+ G +    E + +   FL+ A G  L+PF+ W+ L+G++T++L
Sbjct: 200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTA-GPTLSPFNAWVFLKGLETLSL 258

Query: 206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLAL 264
           R+E    NA  +AE+L +HP V++V Y GLP HP HEL   Q KG G+++SF + G    
Sbjct: 259 RMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREA 318

Query: 265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN 324
           +  V++ T+  SIT + G  K+ I+ P   +H  +  E R A G+TE L+R++VG+EDV 
Sbjct: 319 AWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVA 378

Query: 325 DLISDLDKALR 335
           D+ +DL + L 
Sbjct: 379 DIKADLARGLA 389

Length = 390

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  256 bits (655), Expect = 6e-83
 Identities = 132/372 (35%), Positives = 210/372 (56%), Gaps = 58/372 (15%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADR 72
           D +GAL+ P+YQT+TF   S  + G         Y Y+R GNPT   LE  +A L+  + 
Sbjct: 17  DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEA 76

Query: 73  ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-------------------- 111
           A+  +SGM A+AA +  +L  G+ +++ + LYG T  LL                     
Sbjct: 77  AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136

Query: 112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
                                       ++   AH+ G  ++VDN+  +P+L+ P+ LG 
Sbjct: 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGV 196

Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCWICLRGVKTM 203
           D+V+HSATK+I GH DV+AG++  K E L +  +  +++  GS ++PFD W+ LRG+KT+
Sbjct: 197 DVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256

Query: 204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL 262
            +R+++  +NA K+AE+L SHP V+KV Y G  +HPGH++   Q +  G +++F L G  
Sbjct: 257 NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGF 316

Query: 263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 322
           A +K ++   K   + VS G  ++LI  P  M+HA +P E R+A G+T+ ++R+SVG+ED
Sbjct: 317 AGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLED 376

Query: 323 VNDLISDLDKAL 334
            +DLI+DL +AL
Sbjct: 377 ADDLIADLKQAL 388

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  254 bits (651), Expect = 2e-82
 Identities = 127/380 (33%), Positives = 191/380 (50%), Gaps = 56/380 (14%)

Query: 11  TLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALES 62
           TL +        +   +  LY T+ +   SA         E   + Y+R GNPT    E 
Sbjct: 2   TLAVRGGMLRSGFEETAEALYLTSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVSVFEE 61

Query: 63  LLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------- 111
            LA L+ A+ A+   SGMAA  AA+  LLG G+ +VA   L+G    + S          
Sbjct: 62  RLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRFGVQT 121

Query: 112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSP 134
                                                  +AE+AHA GA ++VDN   +P
Sbjct: 122 VFVDGTDLSAWEAALKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFATP 181

Query: 135 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 194
           +L +PL+LGAD+V++SATK I G   V+ G +    E + + +  L    G  ++PF+ W
Sbjct: 182 LLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMSPFNAW 241

Query: 195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 254
           + L+G++T+A+RV+ Q  +A  IAE+L  HP V+ V Y GLP HP HEL   Q  G G+V
Sbjct: 242 VLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQWVYYPGLPSHPQHELAKRQMSGGGTV 301

Query: 255 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV 314
           ++F       +  V++  +   I+ + G  KS I+ P   +H  +  E R A G+ + LV
Sbjct: 302 VTFDLDCRQAAFKVLDAMRLVDISNNLGDAKSTITHPATTTHRRMGPEERAAAGIGDGLV 361

Query: 315 RISVGIEDVNDLISDLDKAL 334
           R+SVG+EDV+DLI+D+D+AL
Sbjct: 362 RLSVGLEDVDDLIADIDRAL 381

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  253 bits (649), Expect = 7e-82
 Identities = 131/373 (35%), Positives = 203/373 (54%), Gaps = 62/373 (16%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
           +G+L+TP+YQT+TF   SA + G         Y Y+R GNPT   +E+ LA L+  + A+
Sbjct: 24  FGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAV 83

Query: 75  CFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------- 111
              SGM A+ +++   L  G+ +VA D LYG T  LL+                      
Sbjct: 84  VAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVR 143

Query: 112 -------------------------RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGA 144
                                    + I+ +AH +    L+ VDN+  +P + RPL+LGA
Sbjct: 144 NALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGA 203

Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEGSGLAPFDCWICLRGVKT 202
           D+V+HSATK++ GH DV+AG   V  E    ++    +++  GS + PF+ ++ +RG+KT
Sbjct: 204 DVVVHSATKYLNGHGDVIAG-FVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT 262

Query: 203 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS 261
           + +R+EK   NA K+A+FL SHP V+KV Y GL     +EL   Q    G+++SF L G 
Sbjct: 263 LQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG 322

Query: 262 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 321
           +   K V+   K  ++ VS G  ++LI  P  M+H+    E R+  G+++ LVR+SVG+E
Sbjct: 323 VEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLE 382

Query: 322 DVNDLISDLDKAL 334
           DV+D+I+DL +AL
Sbjct: 383 DVDDIIADLKQAL 395

Length = 400

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  253 bits (647), Expect = 1e-81
 Identities = 121/373 (32%), Positives = 194/373 (52%), Gaps = 58/373 (15%)

Query: 19  EFDPYGALSTPLYQTATFK-------QPSATENGP-YDYTRSGNPTRDALESLLAKLDKA 70
           E+ PYGA   P+  +  +           A    P + Y+R+ NPT  A E  +  L+ A
Sbjct: 20  EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGA 79

Query: 71  DRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS------------------ 111
           + A  F++GMAA++   +  L  G+ +V+  D YGGT+++ +                  
Sbjct: 80  EAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139

Query: 112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLEL 142
                                         ++A  A   GAL++VDN+  +P+   PL L
Sbjct: 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLAL 199

Query: 143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT 202
           GAD+V+HSATKF++GH+D + GV     + L +++Y  +   G+ + P   ++ LRG+KT
Sbjct: 200 GADLVIHSATKFLSGHADALGGV-VCGSKELMEQVYHYREINGATMDPMSAYLILRGMKT 258

Query: 203 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGS 261
           + LRV +QQ++A  +A++L +HP+V+ V Y GL  HP HE+  +Q +G G +LSF L G 
Sbjct: 259 LKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGG 318

Query: 262 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 321
           +   K ++   +Y     + G+V+++       SH    +E R A G+ E LVRISVGIE
Sbjct: 319 MDTVKRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIE 378

Query: 322 DVNDLISDLDKAL 334
           D  DLI+DL++A 
Sbjct: 379 DTEDLIADLEQAF 391

Length = 398

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  251 bits (643), Expect = 3e-81
 Identities = 135/372 (36%), Positives = 197/372 (52%), Gaps = 59/372 (15%)

Query: 18  NEFDPYGALSTPLYQTAT-----FKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           N+ + YG +  P++ ++T     F +P A     +DY+R GNPTRD ++  LA+L+    
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRA-----HDYSRRGNPTRDVVQRALAELEGGAG 69

Query: 73  ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRL---------------------- 109
           A+   +GM+A+  V T  L  G+ +VA  D YGG+ RL                      
Sbjct: 70  AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129

Query: 110 ----LSRK---------------------IAEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
               L+ K                     I  +A   GA+ +VDN+ +SP L  PL LGA
Sbjct: 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGA 189

Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 204
           D+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+ 
Sbjct: 190 DLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV 249

Query: 205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLA 263
            R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G   
Sbjct: 250 PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQ 309

Query: 264 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 323
             +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED 
Sbjct: 310 TLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDG 369

Query: 324 NDLISDLDKALR 335
            DLI+DL+   R
Sbjct: 370 EDLIADLENGFR 381

Length = 386

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  248 bits (635), Expect = 5e-80
 Identities = 131/369 (35%), Positives = 195/369 (52%), Gaps = 63/369 (17%)

Query: 23  YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKADRAL 74
            G+L+ PL+QT+TF   +A +           Y Y+R GNPT    E  +A L+  + AL
Sbjct: 21  KGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------------- 111
            F SGMAA++A     L  G+ I+  + LYG T   L                       
Sbjct: 81  AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIE 140

Query: 112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADI 146
                                    +++  +A  +G L++VDN+  SP L RPLELG D 
Sbjct: 141 NKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDA 200

Query: 147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 206
           V+HSATK+I GH DV+AGV   K   LA+++  ++   G  +APFD W+ LRG+KT+A+R
Sbjct: 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLAVR 260

Query: 207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALS 265
           +++  DNA+KI  FL +H  V+ V Y      P  EL   Q K  G V+SF + G    +
Sbjct: 261 MDRHCDNAEKIVSFLKNHDAVEGVWY------PEGELASRQMKRGGGVISFSIKGGKEET 314

Query: 266 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 325
           +  +    + +I VS G  ++LI  P  M+HA+IP E+RQ  G+ ++L+R+SVG+E   D
Sbjct: 315 QAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWED 374

Query: 326 LISDLDKAL 334
           ++SDL++AL
Sbjct: 375 IVSDLEQAL 383

Length = 386

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  245 bits (626), Expect = 1e-78
 Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 49/361 (13%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           Y A+  P+Y +  +  P+  E   YDYTRSGNP R  LE  L++L+    A+    G +A
Sbjct: 21  YHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSA 80

Query: 83  LAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRK---------------------------- 113
           L   V+ LLG  + IVA  D YGGT RL + +                            
Sbjct: 81  LNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPK 140

Query: 114 -------------------IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 154
                              + + A A GAL+ VDN+ ++PVL +PLELGAD V+HS TK+
Sbjct: 141 LILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKY 200

Query: 155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 214
           I GHSDV+ GVL  K +  A+EL +  N  G+   PFD ++ LRG++T+  R+   +++A
Sbjct: 201 INGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESA 260

Query: 215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 273
           Q+I  +L +   V  + +  LPEHPGHE+   Q  G GS+LSF   GS    K  V+   
Sbjct: 261 QQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALA 320

Query: 274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
            FS+  S G V+SLI  P  M+H ++  E     G+++ L+R+SVG+ED  DLI+DLD+A
Sbjct: 321 LFSLAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQA 380

Query: 334 L 334
            
Sbjct: 381 F 381

Length = 388

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  242 bits (619), Expect = 2e-77
 Identities = 134/376 (35%), Positives = 197/376 (52%), Gaps = 60/376 (15%)

Query: 18  NEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDK 69
           +  D  GAL  P+Y TATF  P+A         E   + Y+R  NPT   LE  +A L+ 
Sbjct: 20  DPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEG 79

Query: 70  ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLSR---------------- 112
            + A+   SGM A+ A    LL  G+E++    LYG T   L                  
Sbjct: 80  GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTD 139

Query: 113 -------------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLE 141
                                           +AE+AH  GA ++VDN+  +P L RPLE
Sbjct: 140 PAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLE 199

Query: 142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFLQNAEGSGLAPFDCWICLRG 199
           LGAD+V+HSATK++ GH D+ AG L V G+ LA    L  L++  G+ ++PFD ++ +RG
Sbjct: 200 LGADLVVHSATKYLGGHGDITAG-LVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRG 258

Query: 200 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-L 258
           +KT+ALR+++   +AQ +AE+LA HP V+ V+Y GLP    H L   Q    G +++F L
Sbjct: 259 LKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFEL 318

Query: 259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV 318
            G +A  +  +   + F+  VS G  +SL   P  M+H++   E R   G++E LVR+SV
Sbjct: 319 KGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSV 378

Query: 319 GIEDVNDLISDLDKAL 334
           G+EDV D+++DL +AL
Sbjct: 379 GLEDVADILADLAQAL 394

Length = 403

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  241 bits (617), Expect = 8e-77
 Identities = 135/414 (32%), Positives = 195/414 (47%), Gaps = 90/414 (21%)

Query: 11  TLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           TL ++   E DP  G+ + P+YQT ++   S                Y+R  NPT D LE
Sbjct: 4   TLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLE 63

Query: 62  SLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
             +A L+    AL   SG AA   A+ +L   G+ IV+   LYGGT  L           
Sbjct: 64  QRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIE 123

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                   IAE+AHAHG  L+VDN+  +
Sbjct: 124 VRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFAT 183

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAK------------ 175
           P L RP++ GADIV+HSATK+I GH   + GV+   G       R               
Sbjct: 184 PYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLV 243

Query: 176 ------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA 222
                    F+  A        G+ L+PF+ ++ L+G++T++LR+E+  +NA K+AEFL 
Sbjct: 244 FTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLE 303

Query: 223 SHPRVKKVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVS 280
           +HP+V  VNY GL  HP H L      KG G+VLSF + G     K  ++  K  S   +
Sbjct: 304 AHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLAN 363

Query: 281 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            G  KSL+  P   +H  +  E +   G+T  L+R+SVGIE+++D+I+DL++AL
Sbjct: 364 VGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVGIENIDDIIADLEQAL 417

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  237 bits (605), Expect = 1e-75
 Identities = 127/365 (34%), Positives = 201/365 (55%), Gaps = 53/365 (14%)

Query: 21  DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           +  GA++TP+YQT  +  P   E   Y Y+R  NPT   L   + +L+ A+  + F+SGM
Sbjct: 14  EATGAITTPIYQTTAYHYP---EGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGM 70

Query: 81  AALAAVT-HLLGTGEEIVAGDDLYG----------------------GTDRLLSR----- 112
            A++     LL  G  ++   D++G                      G+D ++ +     
Sbjct: 71  GAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130

Query: 113 --------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 152
                               +++++   +G++L+VD +  +P+  +PLELGADIV+HSA+
Sbjct: 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSAS 190

Query: 153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 212
           KF+AGH+DV+AG+ A  G+ L   +  ++   G+ L P   ++ LRG+KT+ +R++    
Sbjct: 191 KFLAGHNDVIAGLAAGYGK-LLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKIRMDVINR 249

Query: 213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVET 271
           NA++IAEFL  HP+V KV Y GL  H  +E+     KG G VLSF + G    +  V+++
Sbjct: 250 NAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKS 309

Query: 272 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD 331
            K      + G V S+IS P  MSH ++ +E R+  G+T+ L+R+SVGIEDVNDLI DLD
Sbjct: 310 LKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLD 369

Query: 332 KALRT 336
           +AL T
Sbjct: 370 RALST 374

Length = 376

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  237 bits (606), Expect = 2e-75
 Identities = 135/361 (37%), Positives = 191/361 (52%), Gaps = 49/361 (13%)

Query: 23  YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA 82
           YGA++ P+  ++ F          YDYTRSGNPTRD L   LA+L+     +   +GM A
Sbjct: 28  YGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGA 87

Query: 83  LAAVTH-LLGTGEEIVAGDDLYGGTDRLLS------------------------------ 111
           +  V + LL  G+ +V   D YGG+ RL +                              
Sbjct: 88  INLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPK 147

Query: 112 -----------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKF 154
                            R + E AH  GAL +VDN+ +SP L +PLE GAD+V+HS TK+
Sbjct: 148 LVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKY 207

Query: 155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNA 214
           I GHSDV+ G +  +   L ++L +  NA G   +PFD ++ LRG++T+  R+   Q+NA
Sbjct: 208 INGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENA 267

Query: 215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTK 273
             IA  L  H  V +V Y GL  HPGH L   Q KG G++LSF L G  A  +  V+  +
Sbjct: 268 DAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLR 327

Query: 274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
           YF++  S G V+SLI+ P  M+HA++  E R A G+++ L+R+SVGIE   DL+ DL   
Sbjct: 328 YFTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAG 387

Query: 334 L 334
           L
Sbjct: 388 L 388

Length = 405

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  225 bits (575), Expect = 2e-70
 Identities = 136/428 (31%), Positives = 189/428 (44%), Gaps = 93/428 (21%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           M     PG  TL ++     DP  GA + P++ T +F    +         E   + Y+R
Sbjct: 1   MPGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL 110
             NPT   LE  +A L+    A+   SG AAL  A+  L+G G  IVA   LYGG+  LL
Sbjct: 61  ISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLL 120

Query: 111 SR-----------------------------------------------KIAEMAHAHGA 123
                                                             +A +AH  G 
Sbjct: 121 HYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGV 180

Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------- 173
            LLVD++  +P L RP E GAD+V HSATKF+ GH   + GVL V G R           
Sbjct: 181 PLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVL-VDGGRFDWEASGKFPE 239

Query: 174 AKELY----------------FLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQ 210
             E Y                FL  A        G+ L+P + W  L+G++T+ LR+E+ 
Sbjct: 240 LTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERH 299

Query: 211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS-QAKGAGSVLSF-LTGSLALSKHV 268
             N +K+  FLASHP V +V +  L  HP H L      +GAGSV SF L G  A  +  
Sbjct: 300 VANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKF 359

Query: 269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 328
           +E+ K FS   + G  +SL+  P   +H  +      A G+ E  +R+S+G+ED +DLI 
Sbjct: 360 IESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSIGLEDADDLID 419

Query: 329 DLDKALRT 336
           DL +AL+ 
Sbjct: 420 DLKRALKA 427

Length = 433

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  220 bits (563), Expect = 1e-68
 Identities = 141/420 (33%), Positives = 201/420 (47%), Gaps = 93/420 (22%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPY--------DYTRSGNPTR 57
           PG +TL ++   + DP  GA +TP+YQT +F    A               YTR  NPT 
Sbjct: 6   PGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTN 65

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGT---------- 106
             LE  +A L+    AL   SG AA   V H LL  G+E +A   LYGG+          
Sbjct: 66  AVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS 125

Query: 107 ----------------DRLLSRK---------------------IAEMAHAHGALLLVDN 129
                           +R ++ +                     IAE+AH  G  L+VDN
Sbjct: 126 FGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDN 185

Query: 130 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLA---------------------- 167
           ++ SP L RP+E GADIV+HS TKF+ GH + M G++                       
Sbjct: 186 TLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPE 245

Query: 168 VKGERLAK---ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI 217
             G  L +      F   A        G  ++PF+ ++ L G++T+ LR+++  DNA  +
Sbjct: 246 YHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAV 305

Query: 218 AEFLASHPRVKKVNYAGLPEHPGHELH--YSQAKGAGSVLSF-LTGSLALSKHVVETTKY 274
           AE+L  HP+V  VNYAGLP+ P H L   YS  KGAG+V +F L G       +V + K 
Sbjct: 306 AEWLKGHPKVSWVNYAGLPDDPYHALAQKYS-PKGAGAVFTFGLKGGYEAGVKLVSSLKL 364

Query: 275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           FS   + G  +SL+  P   +H  +  E + A G   D+VR+S+GIEDV+D+I+DL++AL
Sbjct: 365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGIEDVDDIIADLEQAL 424

Length = 427

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  217 bits (554), Expect = 5e-68
 Identities = 119/368 (32%), Positives = 185/368 (50%), Gaps = 60/368 (16%)

Query: 21  DP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALESLLAKLDKAD 71
           DP +G ++TP+++T+TF  P++        T   PY YTR GNPT  A E   A L+ A+
Sbjct: 21  DPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAE 80

Query: 72  RALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEMA------------ 118
            AL F+SGM A+ +A+  L+  G+ I++  DLYG T    ++ +  +             
Sbjct: 81  HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140

Query: 119 --------------------------------HAHGALLLVDNSIMSPVLSRPLELGADI 146
                                             H   ++VD +  SP    PL+LGAD+
Sbjct: 141 SLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIVDATFASPYNQNPLDLGADV 200

Query: 147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALR 206
           V+HSATK+I+GHSDV+ GV     + +   L   +   GS   P   ++ LRG+KT+ LR
Sbjct: 201 VIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTLGLR 260

Query: 207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK 266
           +EK   N  ++A FL    ++  V Y      P  E+     +G G +LSF   S+    
Sbjct: 261 MEKHNKNGMELARFLRDSKKISNVYY------PDTEIGKKVLRGFGGMLSFELRSMEDVH 314

Query: 267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 326
             +   +   +  S G V+SLI++P   SH+S+  E R+  G++++LVR S+GIED++DL
Sbjct: 315 KFIRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDL 374

Query: 327 ISDLDKAL 334
           I D++ AL
Sbjct: 375 IKDIENAL 382

Length = 384

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  216 bits (551), Expect = 8e-67
 Identities = 130/403 (32%), Positives = 187/403 (46%), Gaps = 93/403 (23%)

Query: 24  GALSTPLYQTATF----KQPSA-----TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            A + P+YQT ++       +A      E G   YTR  NPT+D +E  +A L+    AL
Sbjct: 30  NARALPIYQTTSYTFDDTDHAAALFGLAEPGNI-YTRIMNPTQDVVEQRIAALEGGVAAL 88

Query: 75  CFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------- 111
              SG AA   A+ +L G G+ IV+   LYGGT  L                        
Sbjct: 89  LLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAW 148

Query: 112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 145
                                       +AE+AH  G  L+VDN+I +P L RPLE GAD
Sbjct: 149 RAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGAD 208

Query: 146 IVMHSATKFIAGHSDVMAGVLAVKGERL-------------------------------A 174
           IV+HSATK++ GH   +AGV+ V G                                   
Sbjct: 209 IVVHSATKYLGGHGTAIAGVI-VDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYAL 267

Query: 175 KELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG 234
           K    L    GS ++PF+ ++  +G++T++LR+E+   NAQ++AEFL +   V  VNYAG
Sbjct: 268 KARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAG 327

Query: 235 LPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC 292
           LP  P +E     A KG G+VLSF L G +   K  V      S   + G V+SL+  P 
Sbjct: 328 LPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPA 387

Query: 293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
             +H+ +  E + A G+T  LVR++VGIE ++D+++DL+    
Sbjct: 388 STTHSQLTPEEQLATGVTPGLVRLAVGIEGIDDILADLEAGFA 430

Length = 436

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  211 bits (540), Expect = 6e-66
 Identities = 116/364 (31%), Positives = 162/364 (44%), Gaps = 57/364 (15%)

Query: 19  EFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS 78
           E  P   +       A +        GP  Y R+ NPT  ALE+ L +L+    AL F S
Sbjct: 15  EAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPS 73

Query: 79  GMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS-------------------------- 111
           GMAA+ AV   LL  G+ +V   D Y     L                            
Sbjct: 74  GMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGA 133

Query: 112 ------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATK 153
                               +A  AHA GALL+VDN+  +P+  RPLELGAD+V+ S TK
Sbjct: 134 DLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTK 193

Query: 154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDN 213
            + GHSD++ G +A +   L   +   +   G+   PF+ W+  R + T+ LR  +Q  N
Sbjct: 194 ALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCAN 253

Query: 214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK 273
           A  +AE LA HP V+ V Y GLP  P HE+   Q +  G ++SF     A ++  V  ++
Sbjct: 254 ALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASR 313

Query: 274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
                 SFG V           H S     R    + E  VR+S GIED +DL++DL++A
Sbjct: 314 LVVAATSFGGV-----------HTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERA 362

Query: 334 LRTG 337
           L   
Sbjct: 363 LDAL 366

Length = 366

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  213 bits (544), Expect = 8e-66
 Identities = 127/411 (30%), Positives = 205/411 (49%), Gaps = 89/411 (21%)

Query: 10  STLLMNFSNEFDPY---GALSTPLYQTATF------------------KQPSATENGPYD 48
            T ++N+   +DP    GA+  P++ T+TF                  K+P A E     
Sbjct: 19  ETQMLNYG--YDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLV 76

Query: 49  YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD 107
           Y+R  +P  + +E  LA  + A+ A  F+SGM+A+A      +  G+ I+    LYGGT+
Sbjct: 77  YSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTE 136

Query: 108 RLLSR----------------------KIAEMAHAHG--ALLLV---------------- 127
            LL++                        AE A A G  +L+L+                
Sbjct: 137 TLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAV 196

Query: 128 -------------------DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 168
                              DN+++ PV  +PLE GAD+ ++S TK++ GHSD++AG  AV
Sbjct: 197 RRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG--AV 254

Query: 169 KGER-LAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRV 227
            G + L +++  L++A G+ L P  CW+  R ++T+ LR+E+   NA+ +AEFL  HP+V
Sbjct: 255 LGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKV 314

Query: 228 KKVNYAGL--PEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSV 284
           +K++Y     P+     ++  Q  GAGS  SF + G  A +   +   + F + VS G  
Sbjct: 315 EKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGT 374

Query: 285 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           +SL S P  M+H+ +P +VR+  G+ E  +R+S+GIE  +DLI+DL +AL 
Sbjct: 375 ESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHPDDLIADLAQALD 425

Length = 427

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  210 bits (536), Expect = 6e-65
 Identities = 120/370 (32%), Positives = 182/370 (49%), Gaps = 61/370 (16%)

Query: 27  STPLYQTATFKQPSATE-----NGPYD---YTRSGNPTRDALESLLAKLDKADRALCFTS 78
           +  LY T+ +   SA        G  D   Y+R GNPT    E  L  ++ A+      S
Sbjct: 34  AEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATAS 93

Query: 79  GMAAL-AAVTHLLGTGEEIVAGDDLYGGT----DRLLSR--------------------- 112
           GM+A+  A+  LLG G+ +VA   L+G      + +L R                     
Sbjct: 94  GMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALS 153

Query: 113 ----------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHS 150
                                  ++E+AHA GA +++DN   +P+L R L LGAD+V++S
Sbjct: 154 VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYS 213

Query: 151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQ 210
            TK I G   V+ G +    E +   +  L    G  L+ F+ W+ L+G++T+ALRV   
Sbjct: 214 GTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLALRVRHS 273

Query: 211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH-- 267
             +A +IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L      +K   
Sbjct: 274 NASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRA 333

Query: 268 --VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND 325
             V++  +   I+ + G  KSLI+ P   +H ++  E R A GL + +VR+SVG+ED +D
Sbjct: 334 FEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDD 393

Query: 326 LISDLDKALR 335
           LI+DLD+AL 
Sbjct: 394 LIADLDRALG 403

Length = 403

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  207 bits (527), Expect = 2e-63
 Identities = 135/427 (31%), Positives = 204/427 (47%), Gaps = 93/427 (21%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPY-GALSTPLYQTAT--FKQP-------SATENGPYDYT 50
           MS E    + TL ++   E DP  G+ + P+YQT +  F+         S  E G   YT
Sbjct: 1   MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFG-NIYT 59

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           R  NPT D  E  +A L+    AL  +SG AA+  ++ ++   G+EIV+   LYGGT  L
Sbjct: 60  RIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNL 119

Query: 110 LS-----------------------------------------------RKIAEMAHAHG 122
            +                                                 +A +AH HG
Sbjct: 120 FAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHG 179

Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 170
             L+VDN+  SP L RP+E GADIV+HSATKFI GH   + GV+   G            
Sbjct: 180 IPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPG 239

Query: 171 --------------ERLAKELYFLQ------NAEGSGLAPFDCWICLRGVKTMALRVEKQ 210
                         + + +  Y  +         G+ L+PF+ ++ L+G++T+ LR+E+ 
Sbjct: 240 LTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERH 299

Query: 211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ-AKGAGSVLSF-LTGSLALSKHV 268
            +NA  +A+FL  H  V+ V+Y GLP HP +EL      KG G++L+F + G +   K +
Sbjct: 300 SENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKL 359

Query: 269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 328
           +++ K FS   + G  KSLI  P   +H  +  E + A G+T  LVR+SVG E ++D++ 
Sbjct: 360 IDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSVGTEAIDDILD 419

Query: 329 DLDKALR 335
           DL +A+R
Sbjct: 420 DLRQAIR 426

Length = 431

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  199 bits (509), Expect = 5e-61
 Identities = 115/374 (30%), Positives = 180/374 (48%), Gaps = 61/374 (16%)

Query: 22  PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRA 73
            +G  S  L+ T  F   +A         E+  + Y+R  NPT D  E  +  L+ A+ A
Sbjct: 24  QFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDA 83

Query: 74  LCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGG----TDRLLSR---------------- 112
               SGMAA+ AA+   +  G+ +VA   L+G      + LL R                
Sbjct: 84  RATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNW 143

Query: 113 ---------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD 145
                                       +A++A+  GA L+VDN   +P+  +PLELGA 
Sbjct: 144 EKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAH 203

Query: 146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTM 203
           IV++SATK I G    + GV+      + + L  YF     G  L+PF+ W  L+G++T+
Sbjct: 204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT--GPSLSPFNAWTLLKGLETL 261

Query: 204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL 262
            +RV +Q ++A  IA+FLA HP+V +V Y G  +HP  ++   Q  G  ++++F L G  
Sbjct: 262 PVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGK 321

Query: 263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED 322
             +   +   K   I+ + G  KSLI+ P   +H ++  E R   G++E  +R+S G+ED
Sbjct: 322 EAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLED 381

Query: 323 VNDLISDLDKALRT 336
            +DLI DL  AL+ 
Sbjct: 382 TDDLIEDLAAALKK 395

Length = 398

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  191 bits (486), Expect = 3e-57
 Identities = 131/407 (32%), Positives = 193/407 (47%), Gaps = 96/407 (23%)

Query: 22  PYGALSTPLYQTATF--------KQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADR 72
              A + P+YQT ++        KQ  A E+ GP  Y+R  NPT +ALE+ +A L+    
Sbjct: 28  DTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPI-YSRLTNPTVEALENRIASLEGGVH 86

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------------- 112
           A+ F SG AA  AA+ +L G G+ IV    LYGGT+ L                      
Sbjct: 87  AVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPE 146

Query: 113 -----------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELG 143
                                         +AE+AH +   L+VDN+I +  L RPLELG
Sbjct: 147 SWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELG 206

Query: 144 ADIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKEL--YF---------LQNAE-- 184
           AD+V+ S TKF  G+   + GVL   G      ER  K +  YF         L+ A+  
Sbjct: 207 ADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLG 266

Query: 185 ----------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 228
                           G+ L+PF+ W+  +G+ T++LR+E+  +NA K+AEFL +H +V 
Sbjct: 267 APAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVA 326

Query: 229 KVNYAGLPEHPGHELHYSQA-KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKS 286
           KVN+AGL + P +        K  GSVLSF + G    +   ++  K  S   + G V+S
Sbjct: 327 KVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRS 386

Query: 287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA 333
           L+  P   +H+          G+T+  VR+SVGIED++D+I+DL+  
Sbjct: 387 LVVHPATTTHSQSDEAGLARAGITQATVRLSVGIEDIDDIIADLEGG 433

Length = 437

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  190 bits (483), Expect = 6e-57
 Identities = 131/404 (32%), Positives = 195/404 (48%), Gaps = 97/404 (24%)

Query: 25  ALSTPLYQTATFKQPSATENGP--YD-------YTRSGNPTRDALESLLAKLDKADRALC 75
           A++ P+YQT ++     T++G   +D       YTR  NPT D LE  +A L+    AL 
Sbjct: 20  AVAVPIYQTTSYAFDD-TQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALA 78

Query: 76  FTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------- 111
             SGMAA+  A+  +   G+ IV+   LYGGT  LL+                       
Sbjct: 79  VASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEA 138

Query: 112 ------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 147
                                   + +A+ AH HG  L+VDN++ +PVL RP E GADIV
Sbjct: 139 LIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIV 198

Query: 148 MHSATKFIAGHSDVMAGVLAVKG---------------------------ERLAKELYF- 179
           +HS TK+I GH   + G++   G                           E      +  
Sbjct: 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIG 258

Query: 180 ------LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA 233
                 L+N  G+ L+PF+ ++ L+G++T+ALR+E+  +NA K+A +L  HP+V  V YA
Sbjct: 259 RCRVVPLRNM-GAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYA 317

Query: 234 GLPEHPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISM 290
           GLP+HP HEL   Y   K A S+LSF + G  A     ++  K     V+ G  KSL   
Sbjct: 318 GLPDHPEHELARRYMGGKPA-SILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACH 376

Query: 291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           P   +H  +  E  +  G++ D+VR+S+GIE ++D+I+DL +AL
Sbjct: 377 PASTTHRQLNDEELEKAGVSRDMVRLSIGIEHIDDIIADLAQAL 420

Length = 425

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  182 bits (464), Expect = 2e-54
 Identities = 115/384 (29%), Positives = 183/384 (47%), Gaps = 82/384 (21%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPS--------ATENGPYDYTRSGNPTRDALESLLAKLD 68
            +E + + A+  P++QT+ F   S        A E     Y+R  NPT  A E +LAKL+
Sbjct: 17  HDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLE 76

Query: 69  KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSR--------------- 112
            A+ A  F SGMAA+++ V   +  G+ IVA   +Y    RL                  
Sbjct: 77  GAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR 136

Query: 113 -------------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLE 141
                                           +A +A  HG + ++DNS  SPV  RP+ 
Sbjct: 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPIT 196

Query: 142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-----GSGLAPFDCWIC 196
           LG D+V+HSA+K++ GHSD +AGV+A   E +A+      NAE     G+ L+PF+ W+ 
Sbjct: 197 LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIAR-----INAEAYPYLGAKLSPFEAWLL 251

Query: 197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS 256
           LRG++T+ LR++  + +A +IA  L +HP V++V +  L  HP   L      G   + S
Sbjct: 252 LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLS-----GTSGLFS 306

Query: 257 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR------QARGLT 310
           F+       +   +  K F + VS+G  +SL+ +P     A + ++ +         G++
Sbjct: 307 FIFREGIDVRAFADALKLFRLGVSWGGHESLV-VP-----AEVVLQQKAQPNSAARFGVS 360

Query: 311 EDLVRISVGIEDVNDLISDLDKAL 334
              VR+ VG+E    L +DL++AL
Sbjct: 361 PRSVRLHVGLEGTEALWADLEQAL 384

Length = 389

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  169 bits (430), Expect = 2e-49
 Identities = 107/403 (26%), Positives = 168/403 (41%), Gaps = 102/403 (25%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
           +GA+  P++ + T+    A +           + Y R G PT  ALE+ + K++     +
Sbjct: 7   HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTV 66

Query: 75  CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------------- 111
           CF +GMAA+AAV   LL  G+ +V+   L+G T+ L                        
Sbjct: 67  CFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAA 126

Query: 112 ------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 147
                                     I  +    G L +VDN++ SP L RP ++GA +V
Sbjct: 127 AIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLV 186

Query: 148 MHSATKFIAGHSDVMAGVLAVKGE----RLA--KELYFLQNAEGSGLAPF------DCWI 195
           ++S +K+IAGH + + G +   G             Y   + +  GL         D   
Sbjct: 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA 246

Query: 196 CLR---------GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS 246
            L          G +T+ALRV++   NA  +A+FL +HP+V +V Y GL  HP H     
Sbjct: 247 TLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATE 306

Query: 247 QAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS---FGSVKSLISMPCFMSHASIPV-- 301
             +  G +LSF    LA      +      + +     G  ++L+          IPV  
Sbjct: 307 LFRHYGGLLSF---ELADGIDCFDFLNRLKLVIKATHLGDTRTLV----------IPVAP 353

Query: 302 --------EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 336
                   E R + G+ + L+R+SVGIED  DLI+D ++AL  
Sbjct: 354 TIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA 396

Length = 397

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  151 bits (384), Expect = 1e-42
 Identities = 109/397 (27%), Positives = 175/397 (44%), Gaps = 73/397 (18%)

Query: 1   MSVEEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSA----TENGPYDYTRSGNP 55
               E+ G++T L +  N+  D +G ++ P+   +T   P A    T    Y Y   G P
Sbjct: 5   QLKTEKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTP 64

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGT----D 107
           T DAL   +  L+ +   +   SG   LAAVT      L  G+  +  D +Y  T    D
Sbjct: 65  TTDALCKAIDALEGSAGTILVPSG---LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCD 121

Query: 108 RLLSR-------------------------------------------KIAEMAHAHGAL 124
            +L R                                            IAE AH HGA+
Sbjct: 122 TMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAI 181

Query: 125 LLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE 184
           +++DN+  +P+  RPL+ G DI +H+ATK+ +GHSD++ G ++   E+   +L       
Sbjct: 182 VMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTL 240

Query: 185 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 244
           G    P D +  LRG++TM +R+E  + +A +IA +L   P V +V +  LP  PGHE+ 
Sbjct: 241 GLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIW 300

Query: 245 YSQAKGAGSVLSF-LTGSLALSKH----VVETTKYFSITVSFGSVKSLISMPCFMSHASI 299
                GA  + SF L       K      ++  + F +  S+G  +SL        H  +
Sbjct: 301 KRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESL------ALHVKL 354

Query: 300 PVEVRQARGLTED-LVRISVGIEDVNDLISDLDKALR 335
             +   A+      ++R+ +G+EDV DL +DL++   
Sbjct: 355 -GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFA 390

Length = 395

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  146 bits (369), Expect = 1e-40
 Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 61/369 (16%)

Query: 17  SNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
                  G+++ PL + +T    S        G   Y R G  T  AL+  + +L+    
Sbjct: 8   RQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAG 67

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGT----DRLLSR--------------- 112
              + SG+AA+  ++   +  G+ ++  D  Y  T    D +L R               
Sbjct: 68  CYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127

Query: 113 ----------------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
                                        IA+ A   G ++++DN+  + +L +PLE G 
Sbjct: 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGV 187

Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 204
           DI + + TK++ GHSD+M G   V   R   +L       G  +   D +  LRG++T+ 
Sbjct: 188 DISIQAGTKYLVGHSDIMIGT-VVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG 246

Query: 205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL 264
           +R+++ Q+++  IA++L+  P V +V +  LP  PGHE       G+  + SF+   L  
Sbjct: 247 VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT- 305

Query: 265 SKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE 321
            K V   ++  + F +  S+G  +SL  +         P      R L   L+R+ +G+E
Sbjct: 306 QKQVHAFLDHLQLFGLGYSWGGYESLA-LCNQPELGHRPN---IKRNLEGPLIRVHIGLE 361

Query: 322 DVNDLISDL 330
           +V+DL +DL
Sbjct: 362 NVDDLKADL 370

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  146 bits (369), Expect = 2e-40
 Identities = 112/399 (28%), Positives = 181/399 (45%), Gaps = 90/399 (22%)

Query: 29  PLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM 80
           PLYQ+ T+K  ++         E   Y YTR GNPT  A E  LA+L+    A+   SG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 81  AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS---RKIA--------------------- 115
           AA+  AV ++  +G+ ++    +YGGT  L     RK+                      
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 116 ---------------------EMAHAHGAL---LLVDNSIMSPVLSRPLELGADIVMHSA 151
                                E + A   L    +VDN++ +P L +  E GA+I++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 152 TKFIAGHSDVMAGVLAVKGE-------------------------------RLAKELYFL 180
           TK+I GH+  + G++   G                                 + K    L
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 181 QNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 240
               G+ ++PF+ +I   G++T+ LR+E+  +NA  +A++LA H R++ VNY GL  +  
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNEN 326

Query: 241 HELHYSQ-AKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS 298
           + L      KGA  VL+F + G L  +K  +   K  ++       ++ +  P   +H  
Sbjct: 327 YSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQ 386

Query: 299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG 337
           +  E ++  G+T DL+R+SVGIEDV+D+I+DL+ AL  G
Sbjct: 387 LSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAALVGG 425

Length = 432

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  142 bits (361), Expect = 2e-39
 Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 73/373 (19%)

Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF 76
           +  TP+ + +T   P            +  + Y     PT  AL   LA+++    AL  
Sbjct: 27  SFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ 86

Query: 77  TSGMAALAAVTH-LLGTGEEIVAGDDLYGGT------------------DRLLSRKIAEM 117
            SG+AA++ V   L+  G++++  D+ YG                    D L+   IA++
Sbjct: 87  PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADL 146

Query: 118 -----------------------------AHAHGALLLVDNSIMSPVLSRPLELGADIVM 148
                                        A A G +  +DN+  + +  +P E G DI +
Sbjct: 147 IQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISV 206

Query: 149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVE 208
            + TK+ +G SDV+ G        L  +L   +   G G++  DC + LRG+ ++ +R+ 
Sbjct: 207 QALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLA 266

Query: 209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV 268
               +A ++AE+L + P +  V +  LP+ PGH        GAG + S +         V
Sbjct: 267 AHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQV 326

Query: 269 ---VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED----LVRISVGIE 321
              VE  + F+I  S+G   SL          ++P +V   R         LVR+ +G+E
Sbjct: 327 DAFVEALELFAIGWSWGGACSL----------AMPYDVASMRTAKWPHRGTLVRLYIGLE 376

Query: 322 DVNDLISDLDKAL 334
           D  DLI+DL++AL
Sbjct: 377 DEADLIADLEQAL 389

Length = 394

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  142 bits (359), Expect = 4e-39
 Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 69/348 (19%)

Query: 44  NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDL 102
           NG   Y R G PT  A ++ + +L+       + SG AA++ A+   L  G+ ++  D  
Sbjct: 50  NGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSC 109

Query: 103 YGGT----DRLLSR-------------------------------------------KIA 115
           Y  T    D++L                                              ++
Sbjct: 110 YEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLS 169

Query: 116 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK 175
            +AH H  ++++DN+  SP+ SRP E+G DI + +ATK+I GHSDVM G  A      A 
Sbjct: 170 RIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT-AT-----AN 223

Query: 176 ELYFLQNAEGSGL-----APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV 230
           E ++ Q  E S L     +P D ++ +RG++T+ +R+ + + NA K+A +LA+ P V  V
Sbjct: 224 EKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHV 283

Query: 231 NYAGLPEHPGHELHYSQAKGAGSVLSFL--TGSLALSKHVVETTKYFSITVSFGSVKSLI 288
            +      PGHE       G+  + SF+   G       +VE  ++F +  S+G  +SLI
Sbjct: 284 RHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLI 343

Query: 289 SMPCFMSHASIPVEVRQARG--LTEDLVRISVGIEDVNDLISDLDKAL 334
                +    I  ++R A     ++ L+R+ +G+EDV+DLI+DL+   
Sbjct: 344 -----LGVFGIN-KLRTATNWDFSKPLIRLHIGLEDVDDLIADLEAGF 385

Length = 394

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  119 bits (301), Expect = 1e-30
 Identities = 103/389 (26%), Positives = 173/389 (44%), Gaps = 93/389 (23%)

Query: 13  LMNFSNEFDPYGALSTPLYQTATF--KQPSA----------TENGPYDYTRSGNPTRDAL 60
           L +  +EF  +G ++  +  +ATF   +P             +   Y Y+R  NPT   L
Sbjct: 22  LASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNL 81

Query: 61  ESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLSR------- 112
              +A L+  + A C  SGM+A+++V   L  +G  +VA + LYGGT  LL+        
Sbjct: 82  GRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCN 141

Query: 113 ------------------------------------------KIAEMAHAHGALLLVDNS 130
                                                     ++A +AH  G  ++VDN+
Sbjct: 142 ITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201

Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLA 189
             +P++  P  LGAD+V+HS +KFI+G +D++AG  AV G   L   +  L +     L 
Sbjct: 202 -FAPMVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPAELVNSMMDLHHGALMLLG 258

Query: 190 P-------FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK----KVNYAGLPEH 238
           P       F+  +  R +  ++LR+++    A + A+      R+K    KV Y GL +H
Sbjct: 259 PTMNPKVAFE--LSER-LPHLSLRMKEHCRRAMEYAK------RMKELGLKVIYPGLEDH 309

Query: 239 PGHELHYSQAK---GAGSVLSFLTGSLA----LSKHVVETTKYFSITVSFGSVKSLISMP 291
           P H L  S A    G G +L     +      L +++  +T++  + VS G  ++L+S  
Sbjct: 310 PQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCS 369

Query: 292 CFMSHASIPVEVRQARGLTEDLVRISVGI 320
              + + +  E + A G++  LVR+SVG 
Sbjct: 370 GSSTSSELDPEEKAAAGISPGLVRMSVGY 398

Length = 418

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  118 bits (297), Expect = 3e-30
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 20/223 (8%)

Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
           A++++DN+  + VL + L+ G DI + + TK++ GHSD M G  AV   R  ++L   +N
Sbjct: 180 AVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGT-AVANARCWEQLR--EN 236

Query: 183 AEGSG-LAPFD-CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 240
           +   G +   D  ++  RG++T+ +R+ + ++++ K+AE+LA HP V +VN+  LP   G
Sbjct: 237 SYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKG 296

Query: 241 HELHYSQAKGAGSVLSF-LTGSLALSK--HVVETTKYFSITVSFGSVKSLISMPCFMSHA 297
           HE       G+  + SF L   L   +  + ++    FS+  S+G  +SLI        A
Sbjct: 297 HEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLIL-------A 349

Query: 298 SIPVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLDKALR 335
           + P E+   R       T  L+R+ +G+EDV+DLI+DL     
Sbjct: 350 NQPEEIAAIRPAGEVDFTGTLIRLHIGLEDVDDLIADLAAGFA 392

Length = 395

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 96  IVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNS----IMSPVLSRPLELGADIVMHSA 151
           I       G    L  ++I ++A  +G LLLVD +              E GAD+V  S 
Sbjct: 98  ITPNTTSGGVLVPL--KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSL 155

Query: 152 TKFIAGHSDVMAGVLAVK 169
            K + G      GV+ VK
Sbjct: 156 HKNLGG---EGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 7/65 (10%)

Query: 112 RKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAV 168
           ++IAE+AH HGAL+LVD +  +  L  P+   ELG D +  S  K++ G + +  GVL V
Sbjct: 182 KEIAELAHEHGALVLVDAAQAAGHL--PIDVQELGCDFLAFSGHKWLLGPTGI--GVLYV 237

Query: 169 KGERL 173
           + E L
Sbjct: 238 RKELL 242

Length = 405

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)

Query: 112 RKIAEMAHAHGALLLVDNS-----IMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGV 165
           RKI E AH  G  +LVD +        P+L S     GADIV+ S  K +   +     +
Sbjct: 173 RKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALT--QGSM 230

Query: 166 LAVKGERLAKE 176
           + VKG+ +  +
Sbjct: 231 IHVKGDLVNPD 241

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and beta-subunits

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 114 IAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKFIAGHS--DVMAGVLAVKG 170
           IA++AH+ GAL+ VD   ++   L  P E GADIV+ +  K    H      AG  AVK 
Sbjct: 181 IADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKK 240

Query: 171 E 171
           E
Sbjct: 241 E 241

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <=> S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. Length = 398

>gnl|CDD|223480 COG0403, GcvP, Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 103 YGGTDRLLSRKIAEMAHAHGALLLVDNSIMS-PVLSRPLELGADIVMHSATKF 154
           +G  +  L R + E AH+ GAL++V    ++  +L  P E GADIV+ SA +F
Sbjct: 222 FGIVEEDL-RALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRF 273

Length = 450

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 59  ALESLLAKLDKADRALCFTSG-MAALAAVTHLLGTGEEIVA 98
           ALE  LA+   A+RAL F+SG  A LA +T L G G+ IV+
Sbjct: 88  ALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVS 128

Length = 385

>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated

 Score = 38.6 bits (91), Expect = 0.004
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 112 RKIAEMAHAHGALL-LVDNSIMSPVLSRPLELGADIV 147
            +IAE+AHA GAL  +  + +   +L  P E GADIV
Sbjct: 223 EEIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIV 259

Length = 447

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.94
PLN02955	476	8-amino-7-oxononanoate synthase	99.93
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.92
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.91
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.91
PLN02483	489	serine palmitoyltransferase	99.9
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.9
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.89
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.88
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.88
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.88
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.87
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.87
PLN02822	481	serine palmitoyltransferase	99.87
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.87
PRK07179	407	hypothetical protein; Provisional	99.87
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.86
PRK13393	406	5-aminolevulinate synthase; Provisional	99.86
PRK13392	410	5-aminolevulinate synthase; Provisional	99.86
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.86
PRK09064	407	5-aminolevulinate synthase; Validated	99.85
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.85
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.85
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.84
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.84
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.83
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.83
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.83
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.83
PLN02721	353	threonine aldolase	99.83
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.82
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.82
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.82
PRK05957	389	aspartate aminotransferase; Provisional	99.81
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.81
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.81
PRK06207	405	aspartate aminotransferase; Provisional	99.81
PRK07324	373	transaminase; Validated	99.8
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.8
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.8
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.8
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.8
PRK06108	382	aspartate aminotransferase; Provisional	99.8
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.79
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.79
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.79
PRK07681	399	aspartate aminotransferase; Provisional	99.79
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.78
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.78
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.78
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.78
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.77
PRK08960	387	hypothetical protein; Provisional	99.77
PRK05764	393	aspartate aminotransferase; Provisional	99.77
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.76
PRK04311	464	selenocysteine synthase; Provisional	99.76
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.76
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.76
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.76
PLN00175	413	aminotransferase family protein; Provisional	99.76
PRK08361	391	aspartate aminotransferase; Provisional	99.76
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.76
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.76
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.76
PRK07682	378	hypothetical protein; Validated	99.75
PRK07550	386	hypothetical protein; Provisional	99.75
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.75
PRK12414	384	putative aminotransferase; Provisional	99.75
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.75
PRK06225	380	aspartate aminotransferase; Provisional	99.75
PLN02187	462	rooty/superroot1	99.74
PRK06348	384	aspartate aminotransferase; Provisional	99.74
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.74
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.74
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.74
PRK08068	389	transaminase; Reviewed	99.74
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.74
PRK08912	387	hypothetical protein; Provisional	99.74
PRK06290	410	aspartate aminotransferase; Provisional	99.74
PRK10534	333	L-threonine aldolase; Provisional	99.73
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.73
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.73
PRK07568	397	aspartate aminotransferase; Provisional	99.73
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.73
PRK07337	388	aminotransferase; Validated	99.73
PRK09082	386	methionine aminotransferase; Validated	99.73
PLN02651	364	cysteine desulfurase	99.73
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.73
PRK07777	387	aminotransferase; Validated	99.73
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.73
PRK05942	394	aspartate aminotransferase; Provisional	99.72
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.72
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.72
PRK02948	381	cysteine desulfurase; Provisional	99.72
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.72
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.72
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.72
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.72
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.72
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.72
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.72
PRK06107	402	aspartate aminotransferase; Provisional	99.72
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.72
PRK07683	387	aminotransferase A; Validated	99.72
PLN02656	409	tyrosine transaminase	99.72
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.72
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.71
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.71
PRK14012	404	cysteine desulfurase; Provisional	99.71
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.71
PRK09148	405	aminotransferase; Validated	99.71
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.71
PRK08175	395	aminotransferase; Validated	99.71
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.71
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.71
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.71
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.71
PTZ00433	412	tyrosine aminotransferase; Provisional	99.7
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.7
PRK08363	398	alanine aminotransferase; Validated	99.7
PRK08636	403	aspartate aminotransferase; Provisional	99.7
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.69
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.69
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.69
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.69
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.69
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.68
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.68
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.68
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.67
PRK06855	433	aminotransferase; Validated	99.67
PRK09265	404	aminotransferase AlaT; Validated	99.67
PRK08354	311	putative aminotransferase; Provisional	99.67
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.67
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.67
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.67
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.67
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.67
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.67
PTZ00377	481	alanine aminotransferase; Provisional	99.66
PRK05839	374	hypothetical protein; Provisional	99.65
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.65
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.65
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.64
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.64
PRK06836	394	aspartate aminotransferase; Provisional	99.64
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.64
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.64
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.64
PLN02409	401	serine--glyoxylate aminotransaminase	99.64
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.64
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.64
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.63
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.63
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.63
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.63
PRK03321	352	putative aminotransferase; Provisional	99.63
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.63
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.63
PRK13237	460	tyrosine phenol-lyase; Provisional	99.63
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.62
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.62
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.62
PLN02271	586	serine hydroxymethyltransferase	99.62
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.62
PRK07908	349	hypothetical protein; Provisional	99.62
PRK09105	370	putative aminotransferase; Provisional	99.62
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.62
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.61
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.61
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.6
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.6
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.6
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.6
PRK07505	402	hypothetical protein; Provisional	99.6
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.59
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.59
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.59
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.59
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.59
PRK02627	396	acetylornithine aminotransferase; Provisional	99.58
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.58
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.58
PLN02231	534	alanine transaminase	99.58
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.57
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.56
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.55
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.55
PTZ00376	404	aspartate aminotransferase; Provisional	99.55
PLN02724	805	Molybdenum cofactor sulfurase	99.54
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.52
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.51
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.49
PLN02397	423	aspartate transaminase	99.49
PLN02624	474	ornithine-delta-aminotransferase	99.49
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.48
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.48
PRK08637	388	hypothetical protein; Provisional	99.47
PLN02672	1082	methionine S-methyltransferase	99.47
PLN02368	407	alanine transaminase	99.47
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.43
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.43
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.43
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.42
PRK03080	378	phosphoserine aminotransferase; Provisional	99.41
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.41
PRK09275	527	aspartate aminotransferase; Provisional	99.4
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.39
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.39
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.38
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.38
PRK04260	375	acetylornithine aminotransferase; Provisional	99.38
PLN00144	382	acetylornithine transaminase	99.38
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.37
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.37
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.37
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.36
COG4100	416	Cystathionine beta-lyase family protein involved i	99.35
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.35
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.35
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.34
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.31
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.31
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.3
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.29
PRK02769	380	histidine decarboxylase; Provisional	99.28
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.27
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.27
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.27
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.27
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.27
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.27
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.26
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.25
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.25
PRK06149	972	hypothetical protein; Provisional	99.25
PRK05367	954	glycine dehydrogenase; Provisional	99.25
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.24
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.24
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.23
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.23
PRK07678	451	aminotransferase; Validated	99.23
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.22
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.21
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.21
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.21
PRK05367	954	glycine dehydrogenase; Provisional	99.21
PRK12403	460	putative aminotransferase; Provisional	99.2
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.2
PRK06541	460	hypothetical protein; Provisional	99.2
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.2
PRK12566	954	glycine dehydrogenase; Provisional	99.19
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.19
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.19
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.19
PRK15029	755	arginine decarboxylase; Provisional	99.17
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.17
PLN02880	490	tyrosine decarboxylase	99.16
PRK06105	460	aminotransferase; Provisional	99.16
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.16
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.15
PLN03032	374	serine decarboxylase; Provisional	99.14
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.13
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.12
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.12
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.11
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.11
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.08
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.07
PLN02590	539	probable tyrosine decarboxylase	99.06
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.06
PRK05965	459	hypothetical protein; Provisional	99.05
PRK07046	453	aminotransferase; Validated	99.04
PRK06062	451	hypothetical protein; Provisional	99.03
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.03
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.99
PRK07482	461	hypothetical protein; Provisional	98.99
PRK07481	449	hypothetical protein; Provisional	98.98
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.98
PRK08297	443	L-lysine aminotransferase; Provisional	98.98
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.97
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.96
PRK07036	466	hypothetical protein; Provisional	98.96
PRK06917	447	hypothetical protein; Provisional	98.96
PRK13578	720	ornithine decarboxylase; Provisional	98.96
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.95
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.95
PRK06148	1013	hypothetical protein; Provisional	98.94
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	98.94
PRK07480	456	putative aminotransferase; Validated	98.93
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.92
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.87
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.86
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	98.85
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.85
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.84
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.84
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.83
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.83
PLN02452	365	phosphoserine transaminase	98.79
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.76
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.74
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.73
PRK15399	713	lysine decarboxylase LdcC; Provisional	98.72
PRK07483	443	hypothetical protein; Provisional	98.72
PRK15400	714	lysine decarboxylase CadA; Provisional	98.72
PLN02263	470	serine decarboxylase	98.7
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.67
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	98.63
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	98.63
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.63
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.59
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.51
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	98.49
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	98.46
PRK12462	364	phosphoserine aminotransferase; Provisional	98.41
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.41
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.37
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.21
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.2
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.17
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	97.97
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	97.95
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	97.87
PRK12566	954	glycine dehydrogenase; Provisional	97.82
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.73
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.41
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	97.39
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.35
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	97.35
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	97.08
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	97.06
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.04
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	96.7
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	96.17
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	95.79
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	95.43
KOG0629	510	consensus Glutamate decarboxylase and related prot	95.01
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	94.3
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	93.54
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	83.82

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-70  Score=510.59  Aligned_cols=332  Identities=51%  Similarity=0.837  Sum_probs=311.3

Q ss_pred             CCCccceeeccCCCC-CCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      .+.++|+++|.+... +.++++.+|||++|||.+++.++        ..+|.|+|.+||+++.||+.+++++|++++++|
T Consensus         5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~af   84 (396)
T COG0626           5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAF   84 (396)
T ss_pred             ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEEe
Confidence            467789999999765 56899999999999999987753        467999999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +|||+|+.+ ++.++++||+|++++..|+++++++.                                            
T Consensus        85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~  164 (396)
T COG0626          85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLE  164 (396)
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccc
Confidence            999999985 77799999999999999999987665                                            


Q ss_pred             ----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-hcCC
Q 019543          112 ----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS  186 (339)
Q Consensus       112 ----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~~~~  186 (339)
                          ++|+++||++|+.+|||+|+++|++++|+++|+||+++|+||+++||++++||+++++++.+.+.+....+ .+|.
T Consensus       165 v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~  244 (396)
T COG0626         165 VPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGA  244 (396)
T ss_pred             cccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCC
Confidence                99999999999999999999999999999999999999999999999999999888887777777755554 6899


Q ss_pred             CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHH
Q 019543          187 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  266 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~  266 (339)
                      .++|+++|+++++|+++..|++++++|++.+++||+++|.|+.|+||++++||+|++++|+++|.|+++||++.+.+++.
T Consensus       245 ~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~  324 (396)
T COG0626         245 VLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAK  324 (396)
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999996546789


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|++.|+.+.+++|||+.+|++++|+.++|..++++.|++.|+.+++||+|||+||.+|||+||.+||+++
T Consensus       325 ~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGlEd~eDLi~Dl~~Al~~~  395 (396)
T COG0626         325 KFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGLEDVEDLIADLEQALAKA  395 (396)
T ss_pred             HHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.9e-67  Score=498.55  Aligned_cols=326  Identities=49%  Similarity=0.790  Sum_probs=286.6

Q ss_pred             cceeeccCCCCC--CCCCccccccccceeeCCCCC-------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHH
Q 019543           10 STLLMNFSNEFD--PYGALSTPLYQTATFKQPSAT-------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (339)
Q Consensus        10 ~~~~~~~~~~~~--~~~~~~~pi~~~~~~~~~~~~-------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~   80 (339)
                      +|+++|++...+  .++++.||||+||||.|++.+       ...+|.|+|.+||+++.||++|++++|++++++|+|||
T Consensus         1 ~T~~vh~g~~~~~~~~~~v~~pi~~sstf~~~~~~~~~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGm   80 (386)
T PF01053_consen    1 ETLLVHAGRDPDEDQTGAVNPPIYQSSTFVFDSAEELDAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGM   80 (386)
T ss_dssp             HHHHHHTTTTGGTSTTTBSS--B---SBBBBSSHHHHHHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHH
T ss_pred             CcceEeCCCCCCCCCCCCeeCCccccccCcccchHHHHhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccchH
Confidence            588999998754  689999999999999998543       35679999999999999999999999999999999999


Q ss_pred             HHHH-HHHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------H
Q 019543           81 AALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------R  112 (339)
Q Consensus        81 ~A~~-~il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~  112 (339)
                      +|+. ++++++++||+|++++..|+++..+++                                               +
T Consensus        81 aAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~  160 (386)
T PF01053_consen   81 AAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLE  160 (386)
T ss_dssp             HHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HH
T ss_pred             HHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHH
Confidence            9997 567799999999999999999987765                                               9


Q ss_pred             HHHHHHHHcC-CEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcC-hhHHHHHHHHHHhcCCCCCh
Q 019543          113 KIAEMAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERLAKELYFLQNAEGSGLAP  190 (339)
Q Consensus       113 ~I~~la~~~g-~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~-~~l~~~l~~~~~~~~~~~~~  190 (339)
                      +|+++||++| ++++||+|++++++.+|+.+|+||+++|++|+++||++++||++++++ +++.++++..++.+|..++|
T Consensus       161 ~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p  240 (386)
T PF01053_consen  161 AIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSP  240 (386)
T ss_dssp             HHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--H
T ss_pred             HHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchH
Confidence            9999999999 999999999999999999999999999999999999999999999987 57888888888889999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHH
Q 019543          191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVV  269 (339)
Q Consensus       191 ~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~  269 (339)
                      .++++++++|+++..|++++.+|+++++++|+++|.|+.|+||++++||+|++++++++|.|++++|++++.. ++.+|+
T Consensus       241 ~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~  320 (386)
T PF01053_consen  241 FDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFL  320 (386)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997774 899999


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||+|||+||++|||+||.+||+
T Consensus       321 ~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  321 DALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLEDPDDLIADLEQALE  386 (386)
T ss_dssp             HH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH
T ss_pred             hhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999996

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-67  Score=472.44  Aligned_cols=333  Identities=41%  Similarity=0.670  Sum_probs=304.5

Q ss_pred             CCCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      ..|.|+|+++|+++.+...++...|||++++|.|++.+        +..+|.|+|..||+.+.||+++|.++|+-.++.+
T Consensus         4 ~~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~   83 (426)
T COG2873           4 ANWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAV   83 (426)
T ss_pred             cccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhh
Confidence            46889999999998844589999999999999999876        3568999999999999999999999999999999


Q ss_pred             CcHHHHHH-HHHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~-~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +|||+|+. +++.++++||+|+.++.+|+|+..++.                                            
T Consensus        84 aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v  163 (426)
T COG2873          84 ASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDV  163 (426)
T ss_pred             ccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccc
Confidence            99999997 678899999999999999999998765                                            


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-h---------------
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R---------------  172 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~---------------  172 (339)
                         ++|.++||+||+++|||++.+++++.+|++.|+||+++|+||++||||..+||+|+-... +               
T Consensus       164 ~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p  243 (426)
T COG2873         164 LDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDP  243 (426)
T ss_pred             cCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCc
Confidence               999999999999999999999999999999999999999999999999999999975321 0               


Q ss_pred             ------HHH---------HHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCC
Q 019543          173 ------LAK---------ELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  236 (339)
Q Consensus       173 ------l~~---------~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~  236 (339)
                            +.+         ++| ...+.+|.+++|+.+++.+.+|+++..|++|+.+|+.++++||++||.|..|+||+++
T Consensus       244 ~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~  323 (426)
T COG2873         244 SYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLA  323 (426)
T ss_pred             cccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCC
Confidence                  011         111 1224579999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          237 EHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       237 ~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                      +||+|++++++. +|.|++++|.+ ++.+...+|+++|+.+....+.|+..|+++||++++|..++++++.++|+.+++|
T Consensus       324 ~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~I  403 (426)
T COG2873         324 SHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLI  403 (426)
T ss_pred             CCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcE
Confidence            999999999885 78999999998 4558889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCHHHHHHHHHHHHhcC
Q 019543          315 RISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~~  337 (339)
                      |+|||+||.+|||+||.|||++.
T Consensus       404 RlSVGIEd~~DiiaDl~qAl~~~  426 (426)
T COG2873         404 RLSVGIEDIDDIIADLEQALEAA  426 (426)
T ss_pred             EEEeccCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999863

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.4e-64  Score=479.76  Aligned_cols=331  Identities=41%  Similarity=0.660  Sum_probs=306.1

Q ss_pred             CCccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH
Q 019543            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~   85 (339)
                      .+++|+++|.+...+ .++++.+|||+|+||.|++..+..+|.|+|.++|+++.||++||+++|++.+++++||++|+.+
T Consensus         4 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~   83 (388)
T PRK08861          4 RKPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFGEVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNL   83 (388)
T ss_pred             CCcccceeECCCCCCCCCCCccCCcccCcceEeCCcCccCCccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHHHH
Confidence            367899999986543 4799999999999999988765567999999999999999999999999999999999999986


Q ss_pred             H-HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHH
Q 019543           86 V-THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEM  117 (339)
Q Consensus        86 i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~l  117 (339)
                      + .+++++||+|+++++.|+++..++.                                               ++|.++
T Consensus        84 ~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~l  163 (388)
T PRK08861         84 WVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQK  163 (388)
T ss_pred             HHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHH
Confidence            4 4588999999999999987654321                                               899999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHH
Q 019543          118 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  197 (339)
Q Consensus       118 a~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~  197 (339)
                      |+++|+++|+|++|+.++..+++..|+|++++|++|+++||++.+||+++++++++.++++.++..+|..++|+++|+++
T Consensus       164 a~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~  243 (388)
T PRK08861        164 AKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTL  243 (388)
T ss_pred             HHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHH
Confidence            99999999999999999888888889999999999999999999999998877778888888888889999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCcce
Q 019543          198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFS  276 (339)
Q Consensus       198 ~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~  276 (339)
                      ++|+++..|++++.+|+..++++|+++|.|..|+||++++||+|+++++++.|.|++++|.++ +.+.+.+|+++|+.+.
T Consensus       244 rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~  323 (388)
T PRK08861        244 RGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFS  323 (388)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcce
Confidence            999999999999999999999999999999999999999999999999999999999999994 5777899999999999


Q ss_pred             eecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       277 i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +++|||+.+|++.+|+.++|+.+++++++..|+++++||+|||+||.||||+||.+||+++
T Consensus       324 ~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGlE~~~dli~Dl~~al~~~  384 (388)
T PRK08861        324 LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVGLEDAQDLIADLDQAFAKA  384 (388)
T ss_pred             EccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999864

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=1.2e-63  Score=482.62  Aligned_cols=337  Identities=86%  Similarity=1.305  Sum_probs=310.7

Q ss_pred             CCCCCCccceeeccCCCCCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHH
Q 019543            3 VEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (339)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A   82 (339)
                      ..|+++++|+++|.+...+.++++.+|||+++||.+++..+...|.|+|.++|++++||+++|+++|++.+++|+||++|
T Consensus        81 ~~~~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aA  160 (464)
T PLN02509         81 IKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAA  160 (464)
T ss_pred             cccCCCcchHheeCCCCCCCCCCccCCccccceecCccccccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHH
Confidence            34689999999999865556789999999999999877655567999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHH
Q 019543           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIA  115 (339)
Q Consensus        83 ~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~  115 (339)
                      +.+++.++++||+|+++++.|+++..++.                                               ++|+
T Consensus       161 i~~il~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~  240 (464)
T PLN02509        161 LSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIA  240 (464)
T ss_pred             HHHHHHHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHH
Confidence            87777789999999999999998753321                                               9999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH
Q 019543          116 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  195 (339)
Q Consensus       116 ~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~  195 (339)
                      ++|++||++||+|+||+.++.++++..++|++++|++|+++|+++.+||+++++++.+.+.++.++...+..++|.++++
T Consensus       241 ~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l  320 (464)
T PLN02509        241 EMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWL  320 (464)
T ss_pred             HHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence            99999999999999999998888888899999999999999999989999998776677777766666788899999999


Q ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc
Q 019543          196 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  275 (339)
Q Consensus       196 ~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~  275 (339)
                      ++++|++++.|++++++|+++++++|+++|.|+.|+||++++||+|++++++++|.|++++|.+++.+.+.+|+++|+.+
T Consensus       321 ~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~  400 (464)
T PLN02509        321 CLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYF  400 (464)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888889999999999


Q ss_pred             eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCCC
Q 019543          276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  339 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~~  339 (339)
                      .+++|||+.+|++++|+.++|+.+++++++..||++++||+|||+||++|||+||.+||++.|+
T Consensus       401 ~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE~~~DLi~Dl~~Al~~~~~  464 (464)
T PLN02509        401 SIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFRTGPL  464 (464)
T ss_pred             eEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999998874

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=4e-62  Score=465.61  Aligned_cols=330  Identities=42%  Similarity=0.626  Sum_probs=302.2

Q ss_pred             CccceeeccCCCCCCCCCccccccccceeeCCCCC----CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHH
Q 019543            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~----~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~   83 (339)
                      +.+|+++|.+...+.++++.+|||+|+||.+++..    +..+|.|+|.++|++++||+++|+++|++++++|+||++|+
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai   81 (385)
T PRK08574          2 RRGTDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAI   81 (385)
T ss_pred             CccceeeecCCCCCCCCCccCCccCCcceecCcchhhcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHH
Confidence            46799999875555689999999999999887642    23468999999999999999999999999999999999999


Q ss_pred             HH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------HHHHH
Q 019543           84 AA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------RKIAE  116 (339)
Q Consensus        84 ~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------~~I~~  116 (339)
                      .. +.++++|||+|+++++.|+++...++                                              ++|++
T Consensus        82 ~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~  161 (385)
T PRK08574         82 STLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAK  161 (385)
T ss_pred             HHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHH
Confidence            85 45689999999999999987654331                                              99999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH
Q 019543          117 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  196 (339)
Q Consensus       117 la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~  196 (339)
                      +|+++|++||+|++|++|...+++..|+|++++|++|+++||++++||+++++++++.++++.+++.+|..++|++++++
T Consensus       162 la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~  241 (385)
T PRK08574        162 AAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLV  241 (385)
T ss_pred             HHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999999987788888999999999999999999899987777778888888888888999999999999


Q ss_pred             HhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcC--CCcceEEEee-CCHHHHHHHHccCC
Q 019543          197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLT-GSLALSKHVVETTK  273 (339)
Q Consensus       197 ~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~--~~~~ivs~~~-~~~~~~~~~~~~L~  273 (339)
                      +++|+++..|++++.+|+.+++++|+++|.|+.|+||++++||+|++++++++  |+|++++|++ ++.+.+.+|+++|+
T Consensus       242 l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~  321 (385)
T PRK08574        242 LRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLK  321 (385)
T ss_pred             HcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999985  6899999999 56788899999999


Q ss_pred             cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       274 ~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||+++
T Consensus       322 l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  385 (385)
T PRK08574        322 LIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLEDVEDLIEDLDQALGSI  385 (385)
T ss_pred             cceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999864

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.7e-62  Score=470.64  Aligned_cols=332  Identities=33%  Similarity=0.536  Sum_probs=298.8

Q ss_pred             CCCCccceeeccCCCCCCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      |..+++|+++|.+...+.++++.+|||+||||.|++.++        ..+|.|+|.+||++++||+.+|+++|++++++|
T Consensus         3 ~~~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~   82 (432)
T PRK06702          3 ESWGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVAT   82 (432)
T ss_pred             CCCCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence            456788999999854444789999999999999987642        346889999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +|||+|+.+ ++++++|||+||+++++|+++..++.                                            
T Consensus        83 ~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~  162 (432)
T PRK06702         83 ASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVYAESLGNPAMN  162 (432)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEEEEcCCCcccc
Confidence            999999985 55689999999999999998876532                                            


Q ss_pred             ----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh---------hHH----
Q 019543          112 ----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------RLA----  174 (339)
Q Consensus       112 ----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~---------~l~----  174 (339)
                          ++|+++|++||+++|+|++++++.+.+|++.|+||+++|+|||++||++.+||+++....         .+.    
T Consensus       163 v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~  242 (432)
T PRK06702        163 VLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDP  242 (432)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccc
Confidence                999999999999999999999999999999999999999999999999999999874321         111    


Q ss_pred             -----------------HHHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCC
Q 019543          175 -----------------KELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  236 (339)
Q Consensus       175 -----------------~~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~  236 (339)
                                       .+.+ ...+.+|..++|+++++++++|++++.|++++++|+.+++++|+++|.|+.|+||+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~  322 (432)
T PRK06702        243 SYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLD  322 (432)
T ss_pred             cccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence                             1112 2344678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          237 EHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       237 ~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                      ++|+|+++++++ .|.|++++|.+ ++.+.+.+|+++|+.+.+++|||+.+|++.||+.++|+.+++++++..|+++++|
T Consensus       323 ~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~li  402 (432)
T PRK06702        323 SNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLI  402 (432)
T ss_pred             CCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeE
Confidence            999999999999 78999999998 5677789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCHHHHHHHHHHHHhc
Q 019543          315 RISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~  336 (339)
                      |||||+||+||||+||.+||+-
T Consensus       403 RlSvGlEd~eDLi~Dl~~Al~~  424 (432)
T PRK06702        403 RLSVGIEDVSDIIADLEAALVG  424 (432)
T ss_pred             EEEeccCCHHHHHHHHHHHHhc
Confidence            9999999999999999999974

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.7e-62  Score=462.56  Aligned_cols=326  Identities=26%  Similarity=0.435  Sum_probs=290.4

Q ss_pred             CCccceeeccCCCCCC-CCCccccccccceeeCCCCC--------C-CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            7 PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~~~~~--------~-~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      .+++|+++|.+...+. ++++.||||+|+||.|++.+        . ..+|.|+|.+||+++.||+++|+++|++.+++|
T Consensus         4 ~~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~~   83 (395)
T PRK08114          4 KKLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALY   83 (395)
T ss_pred             CCcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence            4577999999854443 48999999999999998754        1 135999999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +|||+|+.+ +++++++||+|++++..|+++..+++                                            
T Consensus        84 ~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v  163 (395)
T PRK08114         84 PCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEV  163 (395)
T ss_pred             hHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEe
Confidence            999999985 56689999999999999998886653                                            


Q ss_pred             ---HHHHHHHHHcC--CEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC
Q 019543          112 ---RKIAEMAHAHG--ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS  186 (339)
Q Consensus       112 ---~~I~~la~~~g--~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~  186 (339)
                         ++|+++||++|  ++++||+++++|+..+++++|+||+++|.+||++||+++++|+++.++ +..+.++..+...|.
T Consensus       164 ~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~-~~~~~l~~~~~~~G~  242 (395)
T PRK08114        164 HDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANA-RCWEQLRENSYLMGQ  242 (395)
T ss_pred             ecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCH-HHHHHHHHHHHhccC
Confidence               99999999985  999999999999999999999999999999999999999999887664 566777777778899


Q ss_pred             CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HH
Q 019543          187 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LA  263 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~  263 (339)
                      .++|+++|+++++|+++..|++++.+|+..+++||+++|.|+.|+||++++||+|+++++++.+.|++++|.+++   .+
T Consensus       243 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~  322 (395)
T PRK08114        243 MVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDE  322 (395)
T ss_pred             CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999853   67


Q ss_pred             HHHHHHccCCcceeecccCCccccee--ccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          264 LSKHVVETTKYFSITVSFGSVKSLIS--MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       264 ~~~~~~~~L~~~~i~v~~G~~~s~~~--~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++.+|+++|+.+.+++|||+.+|++.  +|..+.|.. +.+   ..|+.+++||+|||+||++|||+||.+||+++
T Consensus       323 ~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        323 QLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIGLEDVDDLIADLAAGFARI  394 (395)
T ss_pred             HHHHHHHhCCcceeecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            78999999999999999999999998  454555554 332   44566799999999999999999999999864

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=1.6e-61  Score=460.72  Aligned_cols=330  Identities=46%  Similarity=0.749  Sum_probs=305.4

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i   86 (339)
                      +++|.++|.+...+ .++++.+|||+|+||.+++..+..+|.|+|.++|++++||+++++++|++.+++++|||+|+.++
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~   81 (380)
T PRK06176          2 RMQTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIGRPKGYEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAV   81 (380)
T ss_pred             CccceeeECCCCCCCCCCCccCCcccCCceecCCCCCcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHH
Confidence            35788999985433 47899999999999999876555679999999999999999999999999999999999999877


Q ss_pred             HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHH
Q 019543           87 THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAH  119 (339)
Q Consensus        87 l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~  119 (339)
                      +.+++|||+|+++++.|+++..++.                                               ++|.++|+
T Consensus        82 l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~  161 (380)
T PRK06176         82 FSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAK  161 (380)
T ss_pred             HHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHH
Confidence            7788999999999999987764332                                               99999999


Q ss_pred             HcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc
Q 019543          120 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       120 ~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~  199 (339)
                      +||+++|+|++++.++..+++.+++|++++|++|+++|+++.+||+++++++++.++++.+++..|..++|.+++++.++
T Consensus       162 ~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~g  241 (380)
T PRK06176        162 DHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRG  241 (380)
T ss_pred             HcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhc
Confidence            99999999999998887788888999999999999999999999999987777888888888778889999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec
Q 019543          200 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       200 l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                      ++++..|++++++|+.+++++|+.+|.|..|+||+++++|+|++++++++++|++++|++++.+.+.+|+++|+.+.+++
T Consensus       242 l~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~  321 (380)
T PRK06176        242 IKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGE  321 (380)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEcc
Confidence            99999999999999999999999999999999999999999999999999999999999977788899999999999999


Q ss_pred             ccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          280 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       280 ~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |||+.+|++.+|+.++|+.++++++++.|+++++||+|||+||++|||+||.+||+++
T Consensus       322 s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~Al~~~  379 (380)
T PRK06176        322 SLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI  379 (380)
T ss_pred             CCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999875

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-62  Score=451.36  Aligned_cols=330  Identities=46%  Similarity=0.705  Sum_probs=302.8

Q ss_pred             CccceeeccCCCCCC--CCCccccccccceeeCCCC---C-CCC---CCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSA---T-ENG---PYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~--~~~~~~pi~~~~~~~~~~~---~-~~~---~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      .++|.+.|.++..+.  .++|.+||+.++++.|...   . +..   +|.|+|.+||++..||..++++.|++++++|+|
T Consensus        21 ~~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsS  100 (409)
T KOG0053|consen   21 HLDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQDLNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAHALLFSS  100 (409)
T ss_pred             ccchhhhhcccccchhccccccCceecccceeecccCccccccccccccccccCCCCchHHHHHHHHHHhCCceEEEecc
Confidence            478999999987665  8999999995444444332   2 223   499999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------
Q 019543           79 GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------  111 (339)
                      ||+|+.. ++.|+++||+|++.+..|+++.++++                                              
T Consensus       101 GmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~~t~~V~~ESPsNPll~v~D  180 (409)
T KOG0053|consen  101 GMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKENTKAVFLESPSNPLLKVPD  180 (409)
T ss_pred             cHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhccCceEEEEECCCCCcccccc
Confidence            9999875 56689999999999999999987765                                              


Q ss_pred             -HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 019543          112 -RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  190 (339)
Q Consensus       112 -~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~  190 (339)
                       ++|.++||++|++|+||+|.+++++.+++++|+||+++|++|+++||++++||.++.+.+++..+++..++..|+.++|
T Consensus       181 I~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p  260 (409)
T KOG0053|consen  181 IEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDP  260 (409)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCH
Confidence             9999999999999999999999999999999999999999999999999999999998778999999999999999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCc-ceEEEeeCCHHHHHHHH
Q 019543          191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVV  269 (339)
Q Consensus       191 ~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~-~ivs~~~~~~~~~~~~~  269 (339)
                      +++++..++++++..|++++.+|+..++++|+++|.+++|+||++++||+|++++++.+|.+ +++++..++.+.+.+|+
T Consensus       261 ~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~  340 (409)
T KOG0053|consen  261 FDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFY  340 (409)
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999876544 45555678888899999


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCC
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  338 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~  338 (339)
                      ++|+.+.+++|+|+++||+++|+.|+|++ +.++|+..|+.+++||+|||+|+.+|||++|.+||+++.
T Consensus       341 ~~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVGiEd~~dL~~d~~~Al~~~~  408 (409)
T KOG0053|consen  341 DALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVGIEDIEDLIKDFQQALEKAK  408 (409)
T ss_pred             HhhhhhhcccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEeccCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999 999999999999999999999999999999999999864

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.8e-61  Score=459.63  Aligned_cols=330  Identities=40%  Similarity=0.635  Sum_probs=303.2

Q ss_pred             CccceeeccCCC-CCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH
Q 019543            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (339)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i   86 (339)
                      +++|+++|.+.. .+.++++.||||+||||.|++.++..+|.|+|..+|++++||++||+++|.+.+++++||++|+..+
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~   83 (386)
T PRK08045          4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_pred             CcccceeEcCCCCCCCCCCccCCccCCcceecCCccccCCceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHH
Confidence            467999999854 3447999999999999999887655679999999999999999999999999999999999999864


Q ss_pred             -HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           87 -THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        87 -l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                       ..+++|||+|+++++.|+++..++.                                               ++|.++|
T Consensus        84 l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia  163 (386)
T PRK08045         84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHH
Confidence             4589999999999999987553221                                               9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      +++|+++|+|++|+.+...+++..++|++++|++|+++|+++.++|+++++++++.++++..++.+|..++|++++++++
T Consensus       164 ~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r  243 (386)
T PRK08045        164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_pred             HHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999988778888899999999999999999999999988766788888877778899999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCCccee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSI  277 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i  277 (339)
                      +|+++..|++++.+|+.+++++|+.+|.|+.|+||++++||+|++++++++|.|++++|.+ ++.+.+.+|+++|+.+.+
T Consensus       244 gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~  323 (386)
T PRK08045        244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTL  323 (386)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeE
Confidence            9999999999999999999999999999999999999999999999999999999999999 456778899999999999


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++|||+.+|++.+|+.++|+.++++++++.|+++++||+|||+||++|||+||.+||+++
T Consensus       324 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  383 (386)
T PRK08045        324 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_pred             eccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999864

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.4e-61  Score=465.42  Aligned_cols=337  Identities=39%  Similarity=0.618  Sum_probs=302.0

Q ss_pred             CCCCCCCCccceeeccCCCC-CCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCC
Q 019543            1 MSVEEEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (339)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~   71 (339)
                      ||-|.+.+++|+++|.+... +.++++.+|||+|+||.|++.+        ...+|.|+|.++|+++.||+.||+++|++
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~   80 (431)
T PRK08248          1 MSEERTFRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGI   80 (431)
T ss_pred             CcccccCCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCC
Confidence            77888899999999998543 3479999999999999998764        23468899999999999999999999999


Q ss_pred             eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           72 RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      ++++++||++|+.. +..++++||+|+++++.|+++...+.                                       
T Consensus        81 ~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~sp~N  160 (431)
T PRK08248         81 GALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAETIGN  160 (431)
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEECCCC
Confidence            99999999999985 55689999999999999988664332                                       


Q ss_pred             --------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhH----------
Q 019543          112 --------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL----------  173 (339)
Q Consensus       112 --------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l----------  173 (339)
                              ++|+++|+++|+++|+|++++++....++.+++|++++|++|+++|+|+.+||+++.+.+..          
T Consensus       161 PtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~  240 (431)
T PRK08248        161 PKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGL  240 (431)
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccc
Confidence                    99999999999999999999988777778889999999999999999999999988654211          


Q ss_pred             ----------------------HHHHHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          174 ----------------------AKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       174 ----------------------~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                                            ...........|..++|+++|+++++|++++.|++++++|+.+++++|+++|.|+.|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~  320 (431)
T PRK08248        241 TEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVS  320 (431)
T ss_pred             cCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence                                  1112234456799999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          232 YAGLPEHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      ||++++||+|+++++++ +|.|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.+++++++++|+
T Consensus       321 yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi  400 (431)
T PRK08248        321 YPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGV  400 (431)
T ss_pred             CCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCC
Confidence            99999999999999998 67899999998 56677899999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++++||||||+||++|||+||.+||++.
T Consensus       401 ~~~liRlsvGlEd~~dL~~Dl~~Al~~~  428 (431)
T PRK08248        401 TPGLVRLSVGTEAIDDILDDLRQAIRQS  428 (431)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999864

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=5.2e-61  Score=457.34  Aligned_cols=330  Identities=77%  Similarity=1.172  Sum_probs=304.2

Q ss_pred             ccceeeccCCCCCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH
Q 019543            9 VSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH   88 (339)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~   88 (339)
                      ++|+++|.+...+.++++.+|||+|+||.+++..+..+|.|+|.++|++++||+++++++|++++++|+||++|+.+++.
T Consensus         1 ~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~   80 (378)
T TIGR01329         1 LSTLLVNTDNKNDPYDASSMPIYQTATFKQPLAIENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITR   80 (378)
T ss_pred             CCceeEeCCCCCCCCCCcCCCeecCcceecCCccccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence            46889999854445789999999999999987655567999999999999999999999999999999999999987667


Q ss_pred             hcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHHHc
Q 019543           89 LLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAHAH  121 (339)
Q Consensus        89 ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~~~  121 (339)
                      ++++||+|+++++.|+++..++.                                               ++|+++|++|
T Consensus        81 ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~  160 (378)
T TIGR01329        81 LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQ  160 (378)
T ss_pred             HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHc
Confidence            88999999999999988754321                                               9999999999


Q ss_pred             CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh
Q 019543          122 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  201 (339)
Q Consensus       122 g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~  201 (339)
                      |+++|+|++++++...+++..++|++++|++|+++|+++.++|+++++++.+.++++..+...|..++|.++++++++++
T Consensus       161 g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~  240 (378)
T TIGR01329       161 NALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIK  240 (378)
T ss_pred             CCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCC
Confidence            99999999999888778888899999999999999998888999998777777888877777799999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          202 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      +++.|++++.+|+..++++|+++|.++.|.||+++++|+|+++++++.+.+++++|.+++.+.+.+|++.|+.+++++|+
T Consensus       241 tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~  320 (378)
T TIGR01329       241 TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSF  320 (378)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCC
Confidence            99999999999999999999999999999999999999999999998889999999998777789999999999999999


Q ss_pred             CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCC
Q 019543          282 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  338 (339)
Q Consensus       282 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~  338 (339)
                      |+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||+++|
T Consensus       321 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~~  377 (378)
T TIGR01329       321 GSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFVTAP  377 (378)
T ss_pred             CCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999887

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3.7e-61  Score=460.59  Aligned_cols=330  Identities=36%  Similarity=0.639  Sum_probs=301.5

Q ss_pred             CCccceeeccCCCC-CCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      ..++|+++|.+... +.++++.+|||+++||.|++.+        +..+|.|+|.++|++++||+++|+++|++++++|+
T Consensus         7 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s   86 (398)
T PRK08249          7 AGVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAFS   86 (398)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence            36789999998543 4579999999999999998764        23468999999999999999999999999999999


Q ss_pred             cHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      ||++|+..+ ..+++|||+|+++++.|+++..++.                                             
T Consensus        87 sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie~p~NPtg~v~  166 (398)
T PRK08249         87 TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLETPTNPTLKIV  166 (398)
T ss_pred             ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEECCCCCCCccC
Confidence            999999864 4689999999999999987654321                                             


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  189 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~  189 (339)
                        ++|.++|++||+++|+|++|+.+...+++..++|++++|+||+++|+++.+||+++++ ++++++++..+...|..++
T Consensus       167 dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~-~~l~~~l~~~~~~~g~~~s  245 (398)
T PRK08249        167 DIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGS-KELMEQVYHYREINGATMD  245 (398)
T ss_pred             CHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECC-HHHHHHHHHHHHhcCCCCC
Confidence              8999999999999999999998877777778899999999999999998889998875 5788888888888899999


Q ss_pred             hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHH
Q 019543          190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHV  268 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~  268 (339)
                      |..+++++++++++..|++++++|+++++++|+++|.|+.|+||+++++|+|+++++++.|.|++++|++ ++.+.+.+|
T Consensus       246 ~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f  325 (398)
T PRK08249        246 PMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRL  325 (398)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 566778899


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +++|+.+.+++|||+.+|++.+|+.++|+.+++++++..|+++++||||||+||++|||+||.+||+++
T Consensus       326 ~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  394 (398)
T PRK08249        326 LPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDLIADLEQAFAHL  394 (398)
T ss_pred             HHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999863

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=5.5e-61  Score=455.71  Aligned_cols=326  Identities=30%  Similarity=0.506  Sum_probs=292.5

Q ss_pred             CCCCccceeeccCCC-CCCCCCccccccccceeeCCCCCC----CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcH
Q 019543            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE----NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~~----~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG   79 (339)
                      +.++++|+++|.+.. .+.++++.+|||+||||.|++.++    ..+|.|+|.+||+++.||+.++.+++++.+++|+||
T Consensus         9 ~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG   88 (395)
T PRK05967          9 EKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVPSG   88 (395)
T ss_pred             ccCCcccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhcccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEECcH
Confidence            345678999999854 345799999999999999987652    356999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------
Q 019543           80 MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------  111 (339)
Q Consensus        80 ~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------  111 (339)
                      |+|+.+ ++++++|||+|+++++.|+++..++.                                               
T Consensus        89 ~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl  168 (395)
T PRK05967         89 LAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDI  168 (395)
T ss_pred             HHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHH
Confidence            999985 55799999999999999999875442                                               


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  191 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~  191 (339)
                      ++|+++|+++|+++++|++++++++.+|+.+|+|++++|++|+++||+++++|+++.++ +..++++.....+|..++|.
T Consensus       169 ~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~-~~~~~l~~~~~~~G~~~~p~  247 (395)
T PRK05967        169 PAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANE-KCWPQLLEAHGTLGLCAGPD  247 (395)
T ss_pred             HHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCH-HHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999887664 56777776777789999999


Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-C----HHHHH
Q 019543          192 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-S----LALSK  266 (339)
Q Consensus       192 ~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~----~~~~~  266 (339)
                      ++|+++++|+++..|++++.+|+..+++||+++|.|+.|+||++++||+|++++++++|+|++++|++. +    .+.+.
T Consensus       248 da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~  327 (395)
T PRK05967        248 DTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAH  327 (395)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999985 3    67789


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|+++|+.+.+++|||+.+|+++|+ .+     +.+.+.+.|+.+++||||||+||++|||+||.+||+++
T Consensus       328 ~f~~~l~l~~~~~slG~~~sLi~~~-~~-----~~~~~~~~~~~~~liRlSvGlEd~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        328 AFLDALEIFGLGYSWGGYESLALHV-KL-----GDRTVAKAPYAGPVIRLQIGLEDVPDLKADLERGFAAA  392 (395)
T ss_pred             HHHHhCCcceEccCCCCcceeeeeC-CC-----ChhHhhhccCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999873 33     33444446888899999999999999999999999864

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.7e-61  Score=456.89  Aligned_cols=324  Identities=29%  Similarity=0.500  Sum_probs=291.1

Q ss_pred             ccceeeccCCCCCC-CCCccccccccceeeCCCCCC---------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            9 VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE---------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~~~~~~---------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      ++|+++|.+...++ ++++.+|||+|+||.|++.++         ..+|.|+|.++|++++||+++|++++++++++|+|
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~s   84 (394)
T PRK09028          5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPS   84 (394)
T ss_pred             ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            57999999854443 599999999999999887531         13488999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------
Q 019543           79 GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------  111 (339)
                      ||+|+.+ ++++++|||+|+++++.|+++..++.                                              
T Consensus        85 G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lespsNPtg~v~d  164 (394)
T PRK09028         85 GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPGSITMEVQD  164 (394)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCcHHH
Confidence            9999985 55689999999999999988765332                                              


Q ss_pred             -HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 019543          112 -RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  190 (339)
Q Consensus       112 -~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~  190 (339)
                       ++|+++||+||+++++|++|+++...+|+.+|+|++++|++||++||+++++|+++.+ +++.++++..+...|..++|
T Consensus       165 l~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~-~~~~~~l~~~~~~~G~~~~p  243 (394)
T PRK09028        165 VPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATAN-EKHWDQLREHSYLMGQCTSP  243 (394)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECC-HHHHHHHHHHHHhcCCCCCH
Confidence             9999999999999999999999988899999999999999999999999999988655 46777787777778999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--CHHHHHHH
Q 019543          191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHV  268 (339)
Q Consensus       191 ~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--~~~~~~~~  268 (339)
                      .++|+++++|+++..|++++.+|+.++++||+++|.|+.|+||++++||+|++++++++|.|++++|.++  +.+.+.+|
T Consensus       244 ~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f  323 (394)
T PRK09028        244 DDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTAL  323 (394)
T ss_pred             HHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999995  56778999


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +++|+.+.+++|||+.+|++.+|+.++|...    ++..|+.+++||||||+||.+|||+||.+||++.
T Consensus       324 ~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svGlEd~~dLi~Dl~~Al~~~  388 (394)
T PRK09028        324 VEGMQHFKMGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIGLEDVDDLIADLEAGFERY  388 (394)
T ss_pred             HHhCCcceEecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeCcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988776643    3447788899999999999999999999999853

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1e-60  Score=460.57  Aligned_cols=331  Identities=38%  Similarity=0.584  Sum_probs=295.8

Q ss_pred             CCccceeeccCCCC-CCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      .+++|+++|.+... ..++++.+|||+|+||.|++.+        ...+|.|+|.++|++++||+++++++|++.+++|+
T Consensus        12 ~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~s   91 (436)
T PRK07812         12 WSFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLLA   91 (436)
T ss_pred             CCcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEEc
Confidence            56789999998543 3478999999999999998753        23468899999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      |||+|+.+ +.+++++||+|++++..|+++..++.                                             
T Consensus        92 SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~sNp~G~v  171 (436)
T PRK07812         92 SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDV  171 (436)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCCCCCCee
Confidence            99999974 66689999999999999988764322                                             


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-----------------
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----------------  171 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-----------------  171 (339)
                         ++|.++||+||+++|||++++++...+++.+|+|++++|++|+++|+|+.+||+++.+..                 
T Consensus       172 ~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~  251 (436)
T PRK07812        172 LDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPS  251 (436)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcc
Confidence               999999999999999999999998888888899999999999999999999999885321                 


Q ss_pred             ------------hHHHHHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          172 ------------RLAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       172 ------------~l~~~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                                  .+..+++ ...+..|..++|.++|+++++|++++.|++++++|+.+++++|+++|+|+.|+||++++|
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~  331 (436)
T PRK07812        252 YHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSS  331 (436)
T ss_pred             cccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence                        0111122 234467999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEE
Q 019543          239 PGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  316 (339)
Q Consensus       239 ~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRi  316 (339)
                      |+|+++++++ +|.|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.+++++++++|+++++|||
T Consensus       332 p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRl  411 (436)
T PRK07812        332 PWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRL  411 (436)
T ss_pred             ccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEE
Confidence            9999999988 78999999998 566778999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCHHHHHHHHHHHHhcC
Q 019543          317 SVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       317 svg~e~~~~li~~l~~al~~~  337 (339)
                      |||+||++|||+||.+||+++
T Consensus       412 SvGlEd~~dli~dl~~Al~~~  432 (436)
T PRK07812        412 AVGIEGIDDILADLEAGFAAA  432 (436)
T ss_pred             EeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999864

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=2.4e-60  Score=452.96  Aligned_cols=329  Identities=43%  Similarity=0.718  Sum_probs=301.3

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i   86 (339)
                      .++|+++|.+...+ .++++.+|||++++|.+.+..+..+|.|+|+++|++++||+.+|+++|++++++++||++|+.++
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~   82 (382)
T TIGR02080         3 KQATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFNEPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLV   82 (382)
T ss_pred             CcccceeecCCCCCCCCCCccCCeeCCceeEeCCcCccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHH
Confidence            46799999985433 37999999999999998765444568999999999999999999999999999999999999864


Q ss_pred             H-HhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           87 T-HLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        87 l-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                      + ++++|||+|+++++.|+++..++.                                               ++|+++|
T Consensus        83 l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la  162 (382)
T TIGR02080        83 TTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLA  162 (382)
T ss_pred             HHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHH
Confidence            4 589999999999999987654322                                               8999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      +++|++||+|++|+.+....++..++|++++|+||+++|+++.++|+++++++++.++++.++..+|..++|++++++++
T Consensus       163 ~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr  242 (382)
T TIGR02080       163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR  242 (382)
T ss_pred             HHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence            99999999999999887777777789999999999999998889999988777888888888888899999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCccee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSI  277 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~i  277 (339)
                      +++++..|++++.+|+..+++||+.+|.|+.|+||++++||+|+++++++.|.|++++|++. +.+.+.+|+++|+.+.+
T Consensus       243 ~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~  322 (382)
T TIGR02080       243 GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTL  322 (382)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999994 56667899999999999


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||++
T Consensus       323 ~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~dl~~dl~~al~~  381 (382)
T TIGR02080       323 AESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGLEDADDLIADLEQGLRA  381 (382)
T ss_pred             eccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999985

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.6e-60  Score=459.24  Aligned_cols=334  Identities=37%  Similarity=0.555  Sum_probs=296.9

Q ss_pred             CCCCCccceeeccCCCC-CCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEE
Q 019543            4 EEEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (339)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l   74 (339)
                      ..+++++|+++|.+... +.++++.+|||+|+||.|++..        +..+|.|+|.++|++++||+.+++++|+++++
T Consensus         9 ~~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v   88 (437)
T PRK05613          9 ADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAV   88 (437)
T ss_pred             cccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEE
Confidence            45677889999998543 3579999999999999998753        23468999999999999999999999999999


Q ss_pred             EcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH------------------------------------------
Q 019543           75 CFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS------------------------------------------  111 (339)
Q Consensus        75 ~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~------------------------------------------  111 (339)
                      +|+||++|+.+ ++.++++||+||+++..|+++..++.                                          
T Consensus        89 ~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~  168 (437)
T PRK05613         89 AFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQ  168 (437)
T ss_pred             EeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCC
Confidence            99999999975 55688999999999999998753221                                          


Q ss_pred             ------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-h------------
Q 019543          112 ------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R------------  172 (339)
Q Consensus       112 ------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~------------  172 (339)
                            ++|+++|+++|+++++|++++.|...+++..|+|++++|++|+++|+++.+||+++.+++ .            
T Consensus       169 ~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~  248 (437)
T PRK05613        169 ADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFP  248 (437)
T ss_pred             CcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCC
Confidence                  999999999999999999999998888888899999999999999999999999986432 0            


Q ss_pred             ---------------------HHH-HHHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          173 ---------------------LAK-ELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       173 ---------------------l~~-~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                                           +.. ......+.+|..++|+++|+++++|+++..|++++++|+.+++++|+++|.|+.|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V  328 (437)
T PRK05613        249 YFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKV  328 (437)
T ss_pred             CCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceE
Confidence                                 000 1123345679999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          231 NYAGLPEHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                      +||++++||+|+++++++ .+.|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|+++||+.++|+.+++++++++|
T Consensus       329 ~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~G  408 (437)
T PRK05613        329 NFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDEAWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAG  408 (437)
T ss_pred             ECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcC
Confidence            999999999999999986 67899999999 4667889999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +++++||||||+||++|||+||.+||+++
T Consensus       409 i~~~liRlsvGlE~~~dLi~Dl~~Al~~~  437 (437)
T PRK05613        409 ITQATVRLSVGIEDIDDIIADLEGGFAAI  437 (437)
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999863

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=2.2e-60  Score=454.73  Aligned_cols=329  Identities=39%  Similarity=0.708  Sum_probs=297.1

Q ss_pred             CccceeeccCCC-CCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      +++|+++|.+.. .+.++++.||||++|||.|++.+        ...+|.|+|.++|++++||+++|+++|++++++++|
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~~s   82 (391)
T TIGR01328         3 TFATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVATSS   82 (391)
T ss_pred             CcccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            467999999854 34579999999999999998763        234699999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------
Q 019543           79 GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------  111 (339)
                      |++|+.+ +.++++|||+|+++++.|+++...+.                                              
T Consensus        83 G~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le~p~Np~G~v~d  162 (391)
T TIGR01328        83 GMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFETPANPTMKLID  162 (391)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEECCCCCCCcccC
Confidence            9999985 44688999999999998876543321                                              


Q ss_pred             -HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH--HhcCCCC
Q 019543          112 -RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGL  188 (339)
Q Consensus       112 -~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~--~~~~~~~  188 (339)
                       ++|.++|+++|+++|+|++|+.+...+++..++|++++|++|+++|+++.+||++++++ +++++++...  ...|..+
T Consensus       163 l~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~-~li~~l~~~~~~~~~g~~l  241 (391)
T TIGR01328       163 MERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKA-ELLQQIRMVGIKDMTGSVI  241 (391)
T ss_pred             HHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCH-HHHHHHHHHHHHhCCCCCC
Confidence             99999999999999999999998887788889999999999999999988899998764 7777777543  2457789


Q ss_pred             ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHH
Q 019543          189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKH  267 (339)
Q Consensus       189 ~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~  267 (339)
                      +|..+++++++|+++..|++++++|+++++++|+++|+|+.|.||++++||+|+++++++++.|++++|.++ +.+.+.+
T Consensus       242 ~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~  321 (391)
T TIGR01328       242 SPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKK  321 (391)
T ss_pred             CcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999994 6677899


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |+++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||.+|||+||.+||+++
T Consensus       322 f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  391 (391)
T TIGR01328       322 LLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGLEDADDLIADLKQALDAL  391 (391)
T ss_pred             HHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=6.2e-60  Score=449.59  Aligned_cols=327  Identities=48%  Similarity=0.807  Sum_probs=302.6

Q ss_pred             ccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH
Q 019543            9 VSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (339)
Q Consensus         9 ~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il   87 (339)
                      ++|+++|++...+ .++++.||||+|+||.+++..+..+|.|+|.++|+.++||+.+|+++|++.+++++||++|+.+++
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~   82 (377)
T PRK07671          3 AKTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVGKHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM   82 (377)
T ss_pred             cccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH
Confidence            5799999985443 479999999999999998765556799999999999999999999999999999999999988777


Q ss_pred             HhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHHH
Q 019543           88 HLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAHA  120 (339)
Q Consensus        88 ~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~~  120 (339)
                      .+++|||+|+++++.|++++..+.                                               ++|.++|++
T Consensus        83 ~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~  162 (377)
T PRK07671         83 MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKE  162 (377)
T ss_pred             HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence            788999999999999987653221                                               999999999


Q ss_pred             cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch
Q 019543          121 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  200 (339)
Q Consensus       121 ~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l  200 (339)
                      +|+++++|++++.+...++...++|++++|+||+++|+++.++|+++++++++.++++..+...|..++|..++++++++
T Consensus       163 ~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l  242 (377)
T PRK07671        163 KGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGL  242 (377)
T ss_pred             cCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc
Confidence            99999999999988777778889999999999999999888999998887778888988888889999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecc
Q 019543          201 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       201 ~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                      +++..|++++++|+++++++|+++|+|..|+||+++++|+|+++++++.|.|++++|.+++.+.+.+|+++|+.+.+++|
T Consensus       243 ~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~~~~s  322 (377)
T PRK07671        243 KTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAES  322 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcceEccC
Confidence            99999999999999999999999999999999999999999999999999999999999887889999999999999999


Q ss_pred             cCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          281 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       281 ~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ||+.+|++++|+.++|+.+++++++.+|+++++||||||+||++|||+||.+||+
T Consensus       323 ~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~  377 (377)
T PRK07671        323 LGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVGIEDGEDLIEDLAQALA  377 (377)
T ss_pred             CCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999985

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=2.9e-60  Score=450.46  Aligned_cols=322  Identities=36%  Similarity=0.620  Sum_probs=294.8

Q ss_pred             CCccceeeccCCCC-CCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      ++++|.++|.+... +.++++.+|||+++||.+++.++        ..+|.|+|.++|++++||+++++++|++++++|+
T Consensus         7 ~~~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~s   86 (384)
T PRK06434          7 NGFNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSFS   86 (384)
T ss_pred             CCcccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEeC
Confidence            56789999998543 34799999999999999987631        2459999999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      |||+|+.+ +.++++|||+|++++..|+++..++.                                             
T Consensus        87 SG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~l~~~~tklv~~e~~snpt~~v~D  166 (384)
T PRK06434         87 SGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLDFDPSNYDLIYAESITNPTLKVPD  166 (384)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhheeecCCCeeEEEEEcCCCCCceeec
Confidence            99999985 55689999999999888888775442                                             


Q ss_pred             -HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh
Q 019543          112 -RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP  190 (339)
Q Consensus       112 -~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~  190 (339)
                       ++|+++||++|  +++|+++++++.++++..++|++++|.+|+++||++.+||+|+++++++.++++.++..+|..++|
T Consensus       167 i~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~  244 (384)
T PRK06434        167 IKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDP  244 (384)
T ss_pred             HHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCH
Confidence             99999999998  567999999998899999999999999999999999999999988778888888777778999999


Q ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHc
Q 019543          191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  270 (339)
Q Consensus       191 ~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~  270 (339)
                      ++|++++++|++++.|++++++|+++++++|+.+|.|+.|+||+++      ++++++.|.|++++|.+++.+.+.+|++
T Consensus       245 ~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~g~g~~~sf~l~~~~~~~~f~~  318 (384)
T PRK06434        245 IQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLRGFGGMLSFELRSMEDVHKFIR  318 (384)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcCCCCceEEEEECCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999984      7888888999999999977778899999


Q ss_pred             cCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          271 TTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       271 ~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||++
T Consensus       319 ~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGlEd~~dLi~dl~~Al~~  384 (384)
T PRK06434        319 NLEIPMVAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIGIEDIDDLIKDIENALSK  384 (384)
T ss_pred             hCCcceEccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999975

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=4.6e-60  Score=453.67  Aligned_cols=329  Identities=35%  Similarity=0.556  Sum_probs=298.1

Q ss_pred             CCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      ..+++|+++|.+...+.++++.+|||+++||.|++.+        ...+|.|+|.++|++++||++||+++|++++++++
T Consensus        13 ~~~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~   92 (403)
T PRK07810         13 GVSQATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFATA   92 (403)
T ss_pred             cCCcchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEEC
Confidence            4567899999985445578999999999999998754        23468899999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      ||++|+.. +.++++|||+|++++..|++++..+.                                             
T Consensus        93 sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~Nptg~v~  172 (403)
T PRK07810         93 SGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPSNPMQSLV  172 (403)
T ss_pred             ChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCeec
Confidence            99999975 44688999999999888877653321                                             


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  189 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~  189 (339)
                        ++|+++|+++|+++|+|++|+.+...+++..++|++++|++|+++|+|+++||+++++++.+.+.++.+.+..|..++
T Consensus       173 dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s  252 (403)
T PRK07810        173 DIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALS  252 (403)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCC
Confidence              999999999999999999999998888888899999999999999999999999998875444456666667889999


Q ss_pred             hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-----CHHH
Q 019543          190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----SLAL  264 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-----~~~~  264 (339)
                      |+++++++++|++++.|++++.+|+.+++++|+++|.|+.|+||++++||+|+++++++.+.|++++|+++     +.+.
T Consensus       253 ~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~  332 (403)
T PRK07810        253 AFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKR  332 (403)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985     3567


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      +.+|+++|+.+.+++|||+.+|++.+|+.++|+.++.+++++.|+++++||||+|+|+.+|||+||.+||
T Consensus       333 ~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svGlE~~~dli~dl~~Al  402 (403)
T PRK07810        333 AFEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDDLIADLDRAL  402 (403)
T ss_pred             HHHHHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence            8899999999999999999999999999999999999999999999999999999999999999999997

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.8e-59  Score=449.68  Aligned_cols=333  Identities=41%  Similarity=0.678  Sum_probs=302.9

Q ss_pred             CCCCccceeeccCCCC-CCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHH
Q 019543            5 EEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~   83 (339)
                      .|..++|+++|.+... +.++++.|||+++++|.+++.....+|.|+|+.+|++++||+++|+++|++++++++||++|+
T Consensus         9 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai   88 (405)
T PRK08776          9 APCSAATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFGNKRQYDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAI   88 (405)
T ss_pred             CCcCccchheeCCCCCCCCCCCccCCEeccceEEeCCCCcccCCcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHH
Confidence            3566789999998543 447999999999999998776555579999999999999999999999999999999999999


Q ss_pred             HHH-HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHH
Q 019543           84 AAV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIA  115 (339)
Q Consensus        84 ~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~  115 (339)
                      .++ ..+++|||+|+++.+.|+++..++.                                               ++|+
T Consensus        89 ~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~  168 (405)
T PRK08776         89 NLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVI  168 (405)
T ss_pred             HHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHH
Confidence            854 4589999999999999987543321                                               9999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH
Q 019543          116 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  195 (339)
Q Consensus       116 ~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~  195 (339)
                      ++|+++|+++|+|++|+.+...+++.+++|++++|++|+++|+++++||+++++++++.++++..+...|..++|+.+++
T Consensus       169 ~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l  248 (405)
T PRK08776        169 EAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFL  248 (405)
T ss_pred             HHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            99999999999999999887777788899999999999999998888999988777788888877777788899999999


Q ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCCc
Q 019543          196 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKY  274 (339)
Q Consensus       196 ~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~  274 (339)
                      +++++++++.|++++.+|+..++++|+++|.|+.|.||++++||+|+++++++.|.|++++|++ ++.+.+.+|+++|+.
T Consensus       249 ~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l  328 (405)
T PRK08776        249 TLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRY  328 (405)
T ss_pred             HHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999 566778899999999


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.+++|||+.+|+++||+.++|+.++++.++..|+++++||||||+||++|||+||.+||+++
T Consensus       329 ~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dli~dl~~al~~~  391 (405)
T PRK08776        329 FTLAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVGIESAEDLLIDLRAGLARA  391 (405)
T ss_pred             ceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999863

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.6e-59  Score=452.67  Aligned_cols=335  Identities=37%  Similarity=0.586  Sum_probs=296.6

Q ss_pred             CCCCCccceeeccCCC-CCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEE
Q 019543            4 EEEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (339)
Q Consensus         4 ~~~~~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l   74 (339)
                      -.+++++|+++|.+.. .+.++++.+|||+|+||.|++.+        ...+|.|+|.++|++++||+++|+++|+++++
T Consensus         4 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av   83 (433)
T PRK08134          4 MSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAI   83 (433)
T ss_pred             CCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEE
Confidence            3466788999999854 34478999999999999998764        23569999999999999999999999999999


Q ss_pred             EcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH------------------------------------------
Q 019543           75 CFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS------------------------------------------  111 (339)
Q Consensus        75 ~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~------------------------------------------  111 (339)
                      +|+|||+|+.+ +..++++||+||+++..|+++..++.                                          
T Consensus        84 ~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~np~g  163 (433)
T PRK08134         84 ATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLGNPGL  163 (433)
T ss_pred             EeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCcccC
Confidence            99999999985 55589999999999999988755431                                          


Q ss_pred             -----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-h-------------
Q 019543          112 -----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R-------------  172 (339)
Q Consensus       112 -----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~-------------  172 (339)
                           ++|+++|++||+++++|+++++|....++.+|+|++++|.+|+++|+++++||+++.+.. .             
T Consensus       164 ~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~  243 (433)
T PRK08134        164 EVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEP  243 (433)
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCC
Confidence                 899999999999999999999998888888899999999999999999999998874311 0             


Q ss_pred             -----------------HHHHHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCC
Q 019543          173 -----------------LAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  234 (339)
Q Consensus       173 -----------------l~~~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~  234 (339)
                                       +..+.+ ...+.+|..++|.++++++++|++++.|++++++|+.+++++|+++|.|+.|+||+
T Consensus       244 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~  323 (433)
T PRK08134        244 YAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPE  323 (433)
T ss_pred             cccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence                             000011 11235688999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCC
Q 019543          235 LPEHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  312 (339)
Q Consensus       235 ~~~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~  312 (339)
                      +++||+|+++++++ +|.|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.++++++++.|++++
T Consensus       324 l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~~  403 (433)
T PRK08134        324 LESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGEG  403 (433)
T ss_pred             CCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCCC
Confidence            99999999999998 78999999998 45677899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCHHHHHHHHHHHHhcCC
Q 019543          313 LVRISVGIEDVNDLISDLDKALRTGP  338 (339)
Q Consensus       313 ~lRisvg~e~~~~li~~l~~al~~~~  338 (339)
                      +||||||+||+||||+||.+||++++
T Consensus       404 liRlsvGlE~~~dli~dl~~Al~~~~  429 (433)
T PRK08134        404 TIRLSIGLEDADDLIDDLKRALKAAE  429 (433)
T ss_pred             eEEEEeccCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998753

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.2e-59  Score=453.20  Aligned_cols=329  Identities=38%  Similarity=0.620  Sum_probs=292.9

Q ss_pred             ccceeeccCCC-CCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcH
Q 019543            9 VSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (339)
Q Consensus         9 ~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG   79 (339)
                      ++|+++|.+.. .+.++++.+|||+|+||.|++.+        +..+|.|+|..+|++++||++||+++|++.+++++||
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG   82 (425)
T PRK06084          3 LETLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAVASG   82 (425)
T ss_pred             cchhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEehhH
Confidence            56899999854 34478999999999999998763        2346999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------
Q 019543           80 MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------  111 (339)
Q Consensus        80 ~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------  111 (339)
                      ++|+.+ +.++++|||+|+++.+.|+++...+.                                               
T Consensus        83 ~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~lesp~NPtG~v~dl  162 (425)
T PRK06084         83 MAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFCESIGNPAGNIIDI  162 (425)
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEEeCCCCCCCeecCH
Confidence            999985 45688999999999999987764432                                               


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChh-HH----------------
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LA----------------  174 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l~----------------  174 (339)
                      ++|.++|++||++||+|++|+++...+++..++|++++|++|+++|+++++||+++.++.. +.                
T Consensus       163 ~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~  242 (425)
T PRK06084        163 QALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSY  242 (425)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCccc
Confidence            9999999999999999999999988888888999999999999999999999999864320 00                


Q ss_pred             ------------HHH----HHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          175 ------------KEL----YFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       175 ------------~~l----~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                                  ...    ......+|..++|+++++++++|++++.|++++++|+.+++++|+++|.|+.|+||++++|
T Consensus       243 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~  322 (425)
T PRK06084        243 HGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDH  322 (425)
T ss_pred             ccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCc
Confidence                        001    1123357899999999999999999999999999999999999999999999999999999


Q ss_pred             CchHhHhhhcCC-CcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEE
Q 019543          239 PGHELHYSQAKG-AGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI  316 (339)
Q Consensus       239 ~~~~~~~~~~~~-~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRi  316 (339)
                      |+|+++++++.+ +|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.++++++++.|+++++|||
T Consensus       323 p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~  402 (425)
T PRK06084        323 PEHELARRYMGGKPASILSFGIKGGQAAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRL  402 (425)
T ss_pred             ccHHHHHHhCCCCcceEEEEEecCCHHHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEE
Confidence            999999999877 899999998 566678899999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCHHHHHHHHHHHHhcC
Q 019543          317 SVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       317 svg~e~~~~li~~l~~al~~~  337 (339)
                      |||+||++|||+||.+||++.
T Consensus       403 svGlEd~~dLi~dl~~Al~~~  423 (425)
T PRK06084        403 SIGIEHIDDIIADLAQALDAS  423 (425)
T ss_pred             EeccCCHHHHHHHHHHHHHhh
Confidence            999999999999999999864

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=3.3e-59  Score=447.61  Aligned_cols=333  Identities=33%  Similarity=0.554  Sum_probs=300.7

Q ss_pred             CCCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      +.++++|+++|.+...+.++++.+|||++++|.+++.+        +..+|.|+|+.+|++++||+++|+++|++.++++
T Consensus         7 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~   86 (398)
T PRK07504          7 RKWRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARAT   86 (398)
T ss_pred             ccCCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEe
Confidence            55677899999986445578899999999999987653        2356899999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +||++|+.. ++.+++|||+|+++++.|+++...+.                                            
T Consensus        87 ~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~lesp~NptG~v  166 (398)
T PRK07504         87 ASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFLESPTNPTLEV  166 (398)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCcEe
Confidence            999999974 55688999999999999987643321                                            


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  188 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~  188 (339)
                         ++|.++|+++|+++|+|++|+.+....+...++|++++|+||+++|+|+.+||+++++++.+.+.++...+..|..+
T Consensus       167 ~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~  246 (398)
T PRK07504        167 IDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSL  246 (398)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCC
Confidence               99999999999999999999988877777889999999999999999999999999876444445666566778999


Q ss_pred             ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHH
Q 019543          189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKH  267 (339)
Q Consensus       189 ~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~  267 (339)
                      +|..+++++++|+++..|++++++|+++++++|+++|+|..|+||+++++|+|++++++++|+|++++|.+ ++.+.+.+
T Consensus       247 s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~  326 (398)
T PRK07504        247 SPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFR  326 (398)
T ss_pred             CHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 56777899


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |+++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||++.
T Consensus       327 ~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  396 (398)
T PRK07504        327 FLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAAALKKV  396 (398)
T ss_pred             HHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999864

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=4e-59  Score=443.30  Aligned_cols=321  Identities=27%  Similarity=0.459  Sum_probs=286.1

Q ss_pred             ceeeccCCCC-CCCCCccccccccceeeCCCCC----CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH
Q 019543           11 TLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT----ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (339)
Q Consensus        11 ~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~----~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~   85 (339)
                      |+++|.+... +.++++.||||+||||.|++..    +..+|.|+|.+||+++.||++||+++|++++++|+|||+|+.+
T Consensus         1 t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~   80 (377)
T TIGR01324         1 TRLIHSGRQPRFSQGSVNPPLQRASTVLFDSHAAQRRAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTN   80 (377)
T ss_pred             CeeEECCCCCCCCCCCccCCeeCCCceeeCChhhhcCCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHH
Confidence            5678887543 4479999999999999998753    2356999999999999999999999999999999999999985


Q ss_pred             -HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHH
Q 019543           86 -VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEM  117 (339)
Q Consensus        86 -il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~l  117 (339)
                       +.++++|||+|+++++.|+++..++.                                               ++|+++
T Consensus        81 al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~l  160 (377)
T TIGR01324        81 SILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKA  160 (377)
T ss_pred             HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHH
Confidence             55689999999999999987653321                                               899999


Q ss_pred             HHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHH
Q 019543          118 AHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL  197 (339)
Q Consensus       118 a~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~  197 (339)
                      |+++|+++|+|++|+.|...+++.+|+|++++|++|+++|+++++||++++++ +..++++.....+|..++|.++++.+
T Consensus       161 a~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~-~~~~~l~~~~~~~G~~l~p~~a~~~~  239 (377)
T TIGR01324       161 ARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANA-RTWDQLREHSYLMGQMVDADDAYTTL  239 (377)
T ss_pred             HHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCH-HHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999988899999999999999999999999999998875 56777776667789999999999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--CHHHHHHHHccCCcc
Q 019543          198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETTKYF  275 (339)
Q Consensus       198 ~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--~~~~~~~~~~~L~~~  275 (339)
                      ++++++..|++++++|+.+++++|+++|.|..|+||+++++|+|+++++++++.|++++|.+.  +.+++.+|+++|+.+
T Consensus       240 rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~  319 (377)
T TIGR01324       240 RGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLF  319 (377)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999984  467789999999999


Q ss_pred             eeecccCCcccceeccc-cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          276 SITVSFGSVKSLISMPC-FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~-~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++++|||+.+|++.+|. .++|..     +...|+.+++||||||+||++|||+||.+||+++
T Consensus       320 ~~~~slG~~~sl~~~~~~~~~~~~-----~~~~~~~~~liR~svGlE~~~dl~~dl~~al~~~  377 (377)
T TIGR01324       320 GLGYSWGGYESLALCNQPELGHRP-----NIKRNLEGPLIRVHIGLENVDDLKADLKAGFEAI  377 (377)
T ss_pred             eEeccCCCccceeecCCCCCCHHH-----HHhccCCCCEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            99999999999997322 456643     3467788899999999999999999999999864

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1e-58  Score=443.36  Aligned_cols=331  Identities=39%  Similarity=0.672  Sum_probs=300.1

Q ss_pred             CCCCccceeeccCCCCCCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      .+.+++|+++|.+...+.++++.+|||++++|.+++..+        ..+|.|+|..+|++++||+++++++|+++++++
T Consensus         3 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~   82 (390)
T PRK08133          3 DSLGFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVAT   82 (390)
T ss_pred             ccCCcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            345678999999865556789999999999999876531        245889999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +||++|+.+ +.++++|||+|+++++.|+++..++.                                            
T Consensus        83 ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v  162 (390)
T PRK08133         83 ASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTEL  162 (390)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCc
Confidence            999999985 55688999999999999887664332                                            


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  188 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~  188 (339)
                         ++|.++|++||+++|+|++++.+....++..++|++++|+||+++|+++++||++++++ +.++++....+..|..+
T Consensus       163 ~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~-~~~~~~~~~~~~~g~~~  241 (390)
T PRK08133        163 ADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSK-ELMEEVFGFLRTAGPTL  241 (390)
T ss_pred             CCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCH-HHHHHHHHHHHHhCCCC
Confidence               99999999999999999999988877777788999999999999999998999999875 56677776666778899


Q ss_pred             ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHH
Q 019543          189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKH  267 (339)
Q Consensus       189 ~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~  267 (339)
                      ++..+++++++++++..|++++.+|+.+++++|+++|+|+.|+||+++++|+|+++++++.|+|++++|++ ++.+.+.+
T Consensus       242 ~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~  321 (390)
T PRK08133        242 SPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWR  321 (390)
T ss_pred             CHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 46777899


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      |+++|+.+.+++|||+.+|++.+|+.++|+.+++++++..|+++++||||||+||.||||+||.+||++
T Consensus       322 f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~  390 (390)
T PRK08133        322 VIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLEDVADIKADLARGLAA  390 (390)
T ss_pred             HHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999974

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3e-58  Score=439.78  Aligned_cols=329  Identities=44%  Similarity=0.734  Sum_probs=297.2

Q ss_pred             CCCCccceeeccCCCC-CCCCCccccccccceeeCCCCCC-CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHH
Q 019543            5 EEPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A   82 (339)
                      .+.+++|+++|.+... ..++++.+|||+|+||.+++.+. ..+|.|+|..+|.+++||+++|+++|.+.+++++||++|
T Consensus         9 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~A   88 (388)
T PRK07811          9 ANQGFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAA   88 (388)
T ss_pred             CCCCcccceeeCCCCCCCCCCCccCCccCCcceecCCcccccCCCcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHH
Confidence            3456789999998543 34799999999999999887553 356899999999999999999999999999999999999


Q ss_pred             HHHH-HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHH
Q 019543           83 LAAV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKI  114 (339)
Q Consensus        83 ~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I  114 (339)
                      +.++ ..+++|||+|+++++.|+++...+.                                               ++|
T Consensus        89 i~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I  168 (388)
T PRK07811         89 TDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAAL  168 (388)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHH
Confidence            9864 4589999999999999987654322                                               999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHH
Q 019543          115 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  194 (339)
Q Consensus       115 ~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~  194 (339)
                      +++|++||++||+|++++.+....++..++|++++|++|+++|+++++||+++++++++.++++..+...|..++|.+++
T Consensus       169 ~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~  248 (388)
T PRK07811        169 AELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAY  248 (388)
T ss_pred             HHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            99999999999999999998877788889999999999999999888899999887778788877776778889999999


Q ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCC
Q 019543          195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTK  273 (339)
Q Consensus       195 ~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~  273 (339)
                      +++++|++++.|++++++|++.++++|+++|+|+.|+||++++||+|+++++++.|.|++++|++ ++.+.+.+|+++|+
T Consensus       249 l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~  328 (388)
T PRK07811        249 LTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTK  328 (388)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999 56777899999999


Q ss_pred             cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       274 ~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .+.+++|||+.+|++.+|+.++|+.++++   ..|+++++||||||+||++|||+||.+||++
T Consensus       329 ~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svGlE~~~dl~~dl~~al~~  388 (388)
T PRK07811        329 VFTLAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLADLEQALGQ  388 (388)
T ss_pred             cceeeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeCCCCHHHHHHHHHHHhhC
Confidence            99999999999999999999999998854   4699999999999999999999999999974

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-58  Score=440.72  Aligned_cols=314  Identities=32%  Similarity=0.523  Sum_probs=281.2

Q ss_pred             CCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCC
Q 019543           23 YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTG   93 (339)
Q Consensus        23 ~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~G   93 (339)
                      ++++.||||+|+||.+++.+        ...+|.|+|.+||++++||+++++++|++++++|+|||+|+.+ +.++++||
T Consensus         7 ~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~G   86 (397)
T PRK05939          7 HGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAG   86 (397)
T ss_pred             CCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCC
Confidence            58999999999999998753        1246899999999999999999999999999999999999986 44689999


Q ss_pred             CEEEEcCCCccchHHHHH----------------------------------------------HHHHHHHHHcCCEEEE
Q 019543           94 EEIVAGDDLYGGTDRLLS----------------------------------------------RKIAEMAHAHGALLLV  127 (339)
Q Consensus        94 D~Vi~~~~~y~~~~~~~~----------------------------------------------~~I~~la~~~g~~liv  127 (339)
                      |+|+++++.|+++..++.                                              ++|+++|++||+++++
T Consensus        87 d~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv  166 (397)
T PRK05939         87 DHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV  166 (397)
T ss_pred             CEEEECCCccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence            999999999887653222                                              8999999999999999


Q ss_pred             eCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-h------H-------------HHHHH-HHHHhcCC
Q 019543          128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-R------L-------------AKELY-FLQNAEGS  186 (339)
Q Consensus       128 D~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~------l-------------~~~l~-~~~~~~~~  186 (339)
                      |++++++...++...|+|++++|+||+++|+|+++||+++.+.. .      +             ...++ ...+.+|.
T Consensus       167 D~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  246 (397)
T PRK05939        167 DNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGA  246 (397)
T ss_pred             ECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCC
Confidence            99999887777888899999999999999999999998874321 0      0             11122 12346799


Q ss_pred             CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHH
Q 019543          187 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  266 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~  266 (339)
                      .++|.++++++++|+++..|++++.+|+.++++||+++|.|+.|+||+++++|+|+++++++.+.|++++|++.+...+.
T Consensus       247 ~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~~  326 (397)
T PRK05939        247 TLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDCF  326 (397)
T ss_pred             CCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997666788


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|+++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||++|||+||.+||++
T Consensus       327 ~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svGlEd~~dLi~dl~~Al~~  396 (397)
T PRK05939        327 DFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLIADFEQALDA  396 (397)
T ss_pred             HHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=5.1e-58  Score=442.63  Aligned_cols=331  Identities=40%  Similarity=0.638  Sum_probs=293.2

Q ss_pred             CCCccceeeccCCCCC-CCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            6 EPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      +.+++|+++|.+...+ .++++.+|||+++||.|++.+        +..++.|+|.++|++++||+++++++|.+.++++
T Consensus         5 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~   84 (427)
T PRK05994          5 SPGFATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAV   84 (427)
T ss_pred             CCCcchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEE
Confidence            4467899999985433 368999999999999998753        1235889999999999999999999999999999


Q ss_pred             CcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +||++|+.++ .++++|||+|+++++.|+++...+.                                            
T Consensus        85 ~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~vesp~NptG~v  164 (427)
T PRK05994         85 ASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFIESIANPGGTV  164 (427)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCee
Confidence            9999999864 4589999999999999987654321                                            


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-----------------
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-----------------  171 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-----------------  171 (339)
                         ++|.++|++||+++|+|++|+++...+++..++|++++|++|+++|+++.+||+++....                 
T Consensus       165 ~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~  244 (427)
T PRK05994        165 TDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRP  244 (427)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcc
Confidence               999999999999999999999998888888999999999999999999999999885321                 


Q ss_pred             h-----HHHH----------HHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCC
Q 019543          172 R-----LAKE----------LYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP  236 (339)
Q Consensus       172 ~-----l~~~----------l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~  236 (339)
                      .     +.+.          .....+..|..++|++|++++++|++++.|++++++|+.+++++|+++|+|+.|+||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~  324 (427)
T PRK05994        245 EYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP  324 (427)
T ss_pred             hhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence            0     1111          111234578999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          237 EHPGHELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       237 ~~~~~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                      +||+|+++++++ .|+|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++|
T Consensus       325 ~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~li  404 (427)
T PRK05994        325 DDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVV  404 (427)
T ss_pred             CCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcE
Confidence            999999999985 78999999998 5667789999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCHHHHHHHHHHHHhc
Q 019543          315 RISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~  336 (339)
                      |+|||+||++|||+||.+||++
T Consensus       405 RlsvGlE~~~dli~dl~~Al~~  426 (427)
T PRK05994        405 RLSIGIEDVDDIIADLEQALAK  426 (427)
T ss_pred             EEEeccCCHHHHHHHHHHHHhh
Confidence            9999999999999999999986

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=8.3e-58  Score=436.02  Aligned_cols=324  Identities=41%  Similarity=0.666  Sum_probs=295.1

Q ss_pred             cceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHH
Q 019543           10 STLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (339)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~   81 (339)
                      +|+++|.+...+.++++.+|||++++|.+++..        ...+|.|+|+.+|.+++||+.+++++|++++++++||++
T Consensus         1 ~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~   80 (380)
T TIGR01325         1 ATLAIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATATGMS   80 (380)
T ss_pred             CceeEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHHH
Confidence            477899986445678999999999999987753        234689999999999999999999999999999999999


Q ss_pred             HHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HH
Q 019543           82 ALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RK  113 (339)
Q Consensus        82 A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~  113 (339)
                      |+.+ +.+++++||+|+++++.|+++...+.                                               ++
T Consensus        81 Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~  160 (380)
T TIGR01325        81 AIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPSNPLGELVDIAA  160 (380)
T ss_pred             HHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCeeeCHHH
Confidence            9985 44588999999999888877643221                                               99


Q ss_pred             HHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHH
Q 019543          114 IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC  193 (339)
Q Consensus       114 I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a  193 (339)
                      |.++|+++|+++|+|++++.+...+++..++|++++|++|+++|+++.+||++++++ ++++.++...+..|..++|.++
T Consensus       161 I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~-~~~~~l~~~~~~~g~~~~p~~a  239 (380)
T TIGR01325       161 LAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSE-ELMAEVAVYLRHTGPAMSPFNA  239 (380)
T ss_pred             HHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCH-HHHHHHHHHHHhhCCCCCHHHH
Confidence            999999999999999999988777788889999999999999999988999999875 6778888776678889999999


Q ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC
Q 019543          194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK  273 (339)
Q Consensus       194 ~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~  273 (339)
                      ++++++++++..|++++.+++++++++|+++|+|+.|.||+++++|+|+++++++.|+|++++|++++.+.+.+|+++|+
T Consensus       240 ~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~  319 (380)
T TIGR01325       240 WVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVE  319 (380)
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987778899999999


Q ss_pred             cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       274 ~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      .+.+++|||+.+|++.||+.++|..++++++++.|+.+++||||||+||++|||+||.+||
T Consensus       320 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al  380 (380)
T TIGR01325       320 LVSITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVGLEDVDDLIADLKRAL  380 (380)
T ss_pred             cceEcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999996

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=9.7e-58  Score=432.13  Aligned_cols=317  Identities=44%  Similarity=0.736  Sum_probs=289.2

Q ss_pred             CCCCCCCCccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcH
Q 019543            1 MSVEEEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (339)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG   79 (339)
                      ||-+.  +++|.++|.+...+ .++++.||||+|+||.+++..+..+|.|+|.++|++++||+++|+++|++++++++||
T Consensus         1 ~~~~~--~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG   78 (364)
T PRK07269          1 MSKDL--HINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFGQSTGFDYTRTKNPTRAKLEETLAAIESADYALATSSG   78 (364)
T ss_pred             CCccC--CcccceeeCCCCCCCCCCCccCCccCCcceecCCCCCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEeCCH
Confidence            44443  57799999985433 4789999999999999987655567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------HHH
Q 019543           80 MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------RKI  114 (339)
Q Consensus        80 ~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------~~I  114 (339)
                      ++|+.+++.+++|||+|+++.+.|++...++.                                             ++|
T Consensus        79 ~aAi~~~l~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I  158 (364)
T PRK07269         79 MSAIVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKV  158 (364)
T ss_pred             HHHHHHHHHHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHH
Confidence            99998766778999999999999987764321                                             999


Q ss_pred             HHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHH
Q 019543          115 AEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW  194 (339)
Q Consensus       115 ~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~  194 (339)
                      +++|+++|+++|+|+|++++...++++.++|++++|++|+++||++++||+|+++++++.++++..+...|..++|++++
T Consensus       159 ~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~  238 (364)
T PRK07269        159 AKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSY  238 (364)
T ss_pred             HHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            99999999999999999988888888899999999999999999999999999887788888887776778999999999


Q ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc
Q 019543          195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  274 (339)
Q Consensus       195 ~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~  274 (339)
                      +++++|++++.|++++++|+++++++|+++|.|..|.||+                .|++++|.+.+.+.+.+|++.|+.
T Consensus       239 l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg----------------~gg~~sf~~~~~~~~~~f~~~l~~  302 (364)
T PRK07269        239 LLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG----------------KGGMISFKVADETRIPHILNSLKV  302 (364)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC----------------cCcEEEEEECCHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999996                479999999777778999999999


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.+++|+|+.+|++.+|+.++|+.+++++|..+|+.+++||+|||+||++|||+||.+||+
T Consensus       303 ~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGlE~~~dli~dl~~al~  363 (364)
T PRK07269        303 FTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGIEDARDLIADLKQALE  363 (364)
T ss_pred             ceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999986

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=7.8e-58  Score=438.79  Aligned_cols=329  Identities=40%  Similarity=0.666  Sum_probs=296.7

Q ss_pred             CCccceeeccCCC-CCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            7 PGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      -.++|+++|.+.. .+.++++.+|||+||||.|++.+        +..+|.|+|..+|.+++||+.+++++|++++++++
T Consensus         8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~   87 (403)
T PRK07503          8 TGFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA   87 (403)
T ss_pred             CCccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence            3578999999854 34479999999999999998763        23468999999999999999999999999999999


Q ss_pred             cHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      ||++|+.+++ .+++|||+|+++.+.|+++..++.                                             
T Consensus        88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~le~p~NPtG~~~  167 (403)
T PRK07503         88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYFETPANPNMRLV  167 (403)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEEeCCCCCCCeee
Confidence            9999997544 588999999999998876543321                                             


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH--HHhcCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSG  187 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~~~~~~~  187 (339)
                        ++|+++|++||++||+|++|+.+...+++..++|++++|+||+++|+++.+||+++.+ +++.++++..  +...|..
T Consensus       168 di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~-~~l~~~l~~~~~~~~~g~~  246 (403)
T PRK07503        168 DIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGG-KALADRIRLEGLKDMTGAV  246 (403)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcC-HHHHHHHHhhhHHhCcCCC
Confidence              9999999999999999999998877777778899999999999999988899999855 5688888743  4556899


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSK  266 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~  266 (339)
                      ++|+++++++++|++++.|++++.+|+++++++|+++|.|+.|+||+++++|+|+++++++.+.|++++|.+ ++.+.+.
T Consensus       247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~  326 (403)
T PRK07503        247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGR  326 (403)
T ss_pred             CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988999999998 5667788


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|.+.|+.+.+++|||+.+|++.+|..++|..++++++++.|+++++||||||+||++|||+||.+||++
T Consensus       327 ~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~Al~~  396 (403)
T PRK07503        327 RFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVGLEDVADILADLAQALDA  396 (403)
T ss_pred             HHHHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999975

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=1.1e-57  Score=440.04  Aligned_cols=330  Identities=35%  Similarity=0.623  Sum_probs=297.1

Q ss_pred             CCCccceeeccCCCCCC-CCCccccccccceeeCCCCCC------------------CCCCcccCCCCchHHHHHHHHHh
Q 019543            6 EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE------------------NGPYDYTRSGNPTRDALESLLAK   66 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~~~~~~------------------~~~~~y~r~~~~~~~~le~~la~   66 (339)
                      +.+++|+++|.+...+. ++++.+|||+||||.+++.++                  ..+|.|+|+.+|+++.||+.||+
T Consensus        15 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~   94 (427)
T PRK07049         15 ELHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV   94 (427)
T ss_pred             cCCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHH
Confidence            45668999998854433 799999999999999877531                  23488999999999999999999


Q ss_pred             HhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------
Q 019543           67 LDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------  111 (339)
Q Consensus        67 ~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------  111 (339)
                      ++|.+++++++||++|+.+ +.++++|||+|+++++.|+++..++.                                  
T Consensus        95 leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~  174 (427)
T PRK07049         95 YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGR  174 (427)
T ss_pred             HhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCC
Confidence            9999999999999999985 45689999999999999987743321                                  


Q ss_pred             -------------------HHHHHHHHH------cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEE
Q 019543          112 -------------------RKIAEMAHA------HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL  166 (339)
Q Consensus       112 -------------------~~I~~la~~------~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v  166 (339)
                                         ++|.+++++      +++++|+||++..+...+++..++||+++|+||+++|+++.++|++
T Consensus       175 tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~v  254 (427)
T PRK07049        175 VSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAV  254 (427)
T ss_pred             ceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEE
Confidence                               788888887      8999999999987776677777899999999999999888999999


Q ss_pred             EEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCC--CCCCchHhH
Q 019543          167 AVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL--PEHPGHELH  244 (339)
Q Consensus       167 ~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~--~~~~~~~~~  244 (339)
                      ++++ ++++.++..+..+|..++|..+++++++|+++..|++++.+|++.++++|+++|+|+.|+||++  ++||+|+++
T Consensus       255 v~~~-~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~  333 (427)
T PRK07049        255 LGRK-ALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVY  333 (427)
T ss_pred             ECCH-HHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHH
Confidence            8764 6888888888788999999999999999999999999999999999999999999999999985  999999999


Q ss_pred             hhhcCCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCH
Q 019543          245 YSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV  323 (339)
Q Consensus       245 ~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~  323 (339)
                      ++++.|.|++++|++ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|+.+++++++..|+++++||||||+||+
T Consensus       334 ~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGlE~~  413 (427)
T PRK07049        334 KRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGIEHP  413 (427)
T ss_pred             HhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCcCCH
Confidence            999999999999998 5667789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 019543          324 NDLISDLDKALRT  336 (339)
Q Consensus       324 ~~li~~l~~al~~  336 (339)
                      ||||+||.+||++
T Consensus       414 ~dl~~dl~~al~~  426 (427)
T PRK07049        414 DDLIADLAQALDA  426 (427)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999985

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.1e-57  Score=435.98  Aligned_cols=325  Identities=40%  Similarity=0.668  Sum_probs=291.0

Q ss_pred             CCCccceeeccCCCC-CCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            6 EPGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      .++++|+++|.+... +.++++.+|||+|+||.+++.+        ...+|.|+|+++|++++||+.+|+++|.++++++
T Consensus         3 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~   82 (386)
T PRK06767          3 KKHMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF   82 (386)
T ss_pred             CCCcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence            456889999998543 4478999999999999998754        2346899999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +||++|+.+ +..+++|||+|+++++.|+++...+.                                            
T Consensus        83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~lesp~NptG~v  162 (386)
T PRK06767         83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVETPINPTMKL  162 (386)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEeCCCCCCcee
Confidence            999999975 44689999999999998877654332                                            


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHH-HHHHHhcCCC
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-YFLQNAEGSG  187 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l-~~~~~~~~~~  187 (339)
                         ++|.++|+++|+++++|++|+++....++..++|++++|+||+++|+++++||++++++ +.++.+ +..+...|..
T Consensus       163 ~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~-~~i~~~~~~~~~~~g~~  241 (386)
T PRK06767        163 IDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKT-RALAEKIRPMRKDIGGI  241 (386)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeCh-HHHHHHHHHHHHHhCCC
Confidence               99999999999999999999988877788889999999999999999998899999886 455554 4555667888


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSK  266 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~  266 (339)
                      ++|+.+++++++|+++..|++++++++++++++|+++|+|+.|.||      +|+++++++.+.|++++|.+. +.+.+.
T Consensus       242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~~~gg~vsf~l~~~~~~~~  315 (386)
T PRK06767        242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMKRGGGVISFSIKGGKEETQ  315 (386)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCCCCCceEEEEEcCCHHHHH
Confidence            9999999999999999999999999999999999999999999998      688999999999999999984 566788


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|+++|+.+++++|||+.+|++++|+.++|+.++++++++.|+++++||||||+||++|||+||.+||+++
T Consensus       316 ~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  386 (386)
T PRK06767        316 AFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALKKI  386 (386)
T ss_pred             HHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999864

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-57  Score=432.53  Aligned_cols=325  Identities=39%  Similarity=0.657  Sum_probs=294.2

Q ss_pred             CccceeeccCCCCCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-H
Q 019543            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-V   86 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-i   86 (339)
                      .++|.++|.+. .+.++++.+|||+||||.+++.   .+|.|+|.++|.+++||+++|+++|++.+++++||++|+.. +
T Consensus         2 ~~~t~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~---~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l   77 (376)
T PRK06460          2 KDATRTVREDI-DEATGAITTPIYQTTAYHYPEG---EKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTA   77 (376)
T ss_pred             CcceeeeecCC-CCCCCCccCCccCCcceeeCCC---CCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHH
Confidence            46799999985 3457899999999999999864   36899999999999999999999999999999999999985 4


Q ss_pred             HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHH
Q 019543           87 THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAH  119 (339)
Q Consensus        87 l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~  119 (339)
                      ..+++|||+|+++.+.|++++..+.                                               ++|+++|+
T Consensus        78 ~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~  157 (376)
T PRK06460         78 LALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCK  157 (376)
T ss_pred             HHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHH
Confidence            5589999999999887766543221                                               89999999


Q ss_pred             HcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc
Q 019543          120 AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       120 ~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~  199 (339)
                      +||+++|+|++|+.+....++..++|+++.|+||+++|+++.++|++++++ ++++.++..+..++..++|..+++++++
T Consensus       158 ~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~-~l~~~l~~~~~~~g~~~~~~~a~~~l~~  236 (376)
T PRK06460        158 ENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYG-KLLNVIDQMRRTLGTSLDPHAAYLTLRG  236 (376)
T ss_pred             HcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCH-HHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence            999999999999887665666667899999999999998888899998764 7888888877778888999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCCcceee
Q 019543          200 VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       200 l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~  278 (339)
                      +++++.|++++.+|+++++++|+++|.|+.|+||++++||+|+++++++++.|++++|++ ++.+.+.+|+++|+.+.++
T Consensus       237 ~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~  316 (376)
T PRK06460        237 IKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPA  316 (376)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceec
Confidence            999999999999999999999999999999999999999999999999999999999999 4567789999999999999


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|||+.+|++.+|+.++|+.+++++++..|+++++||+|||+||+||||+||.+||+++
T Consensus       317 ~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~~  375 (376)
T PRK06460        317 QTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGIEDVNDLIEDLDRALSTL  375 (376)
T ss_pred             cCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999864

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=1.7e-57  Score=432.59  Aligned_cols=312  Identities=54%  Similarity=0.889  Sum_probs=288.7

Q ss_pred             CCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCC
Q 019543           24 GALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGE   94 (339)
Q Consensus        24 ~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD   94 (339)
                      +++.+|||+|+||.+++.+        ...++.|+|.++|++++||+++++++|++++++|+||++|+.. +.+++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            4789999999999998764        2346899999999999999999999999999999999999986 445889999


Q ss_pred             EEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHHHcCCEEEE
Q 019543           95 EIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAHAHGALLLV  127 (339)
Q Consensus        95 ~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~~~g~~liv  127 (339)
                      +|+++++.|+++...+.                                               ++|+++|++||+++++
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~liv  160 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVV  160 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence            99999999988764321                                               9999999999999999


Q ss_pred             eCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHHHH
Q 019543          128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV  207 (339)
Q Consensus       128 D~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~  207 (339)
                      |++|+.++..+++..++|++++|++|+++|+++.+||++++++++++++++..++.+|+.++|..+++++++|++++.|+
T Consensus       161 D~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r~  240 (369)
T cd00614         161 DNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLRM  240 (369)
T ss_pred             ECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHHH
Confidence            99999998877888899999999999999998889999999875788889888778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCcceeecccCCccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      +++.+|+++++++|+++|+|..|+||+++++|+|+++++++.+.|++++|.++ +.+.+.+|+++|+.+.+++|||+++|
T Consensus       241 ~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~s  320 (369)
T cd00614         241 ERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVES  320 (369)
T ss_pred             HHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCce
Confidence            99999999999999999999999999999999999999999999999999995 77889999999999999999999999


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ++++|+.++|..+++++++..|+++++||+|||+||.+|||+||.+||+
T Consensus       321 l~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGlE~~~dl~~dl~~al~  369 (369)
T cd00614         321 LVEHPASMTHSQLPPEERAAAGITPGLVRLSVGIEDVEDLIADLEQALK  369 (369)
T ss_pred             eeeCCcccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999985

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=8.7e-57  Score=430.02  Aligned_cols=331  Identities=46%  Similarity=0.795  Sum_probs=303.7

Q ss_pred             CCccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH
Q 019543            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~   85 (339)
                      .+++|+++|.+...+ .++++++|||++++|.+++.++..+|.|+|.++|.+++||+++|+++|++++++++||++|+.+
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~   84 (390)
T PRK08064          5 YSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDTFGKYDYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAIST   84 (390)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCcccCcceecCcccccCCCcccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHH
Confidence            357799999985433 4799999999999999988776677999999999999999999999999999999999999986


Q ss_pred             HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           86 VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        86 il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                      ++.++++||+|+++++.|++++..+.                                               ++|.++|
T Consensus        85 ~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la  164 (390)
T PRK08064         85 AFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLA  164 (390)
T ss_pred             HHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHH
Confidence            55678999999999999987653221                                               9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      +++|+++|+|++++.+....++.+++|++++|+||+++|+++.++|+++++++++.++++..+..+|..++|.+++++++
T Consensus       165 ~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~  244 (390)
T PRK08064        165 KAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLR  244 (390)
T ss_pred             HHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence            99999999999999887767777899999999999999998888999988877788888888877899999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                      +++++..|++++.+|+..++++|+++|.|..|+||+++++|+|+++++++.+.|++++|.+++.+++.+|+++|+.+.++
T Consensus       245 gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~  324 (390)
T PRK08064        245 GLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFA  324 (390)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEc
Confidence            99999999999999999999999999999999999999999999999999999999999998877889999999999999


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|+|+.+|++++|+.++|+.++.+++...|+++++||+|||+||++|+|+||.+||+++
T Consensus       325 ~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        325 VSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             ccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999863

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=5e-57  Score=433.04  Aligned_cols=329  Identities=39%  Similarity=0.648  Sum_probs=297.5

Q ss_pred             CccceeeccCCC-CCCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      .++|.++|.+.. .+.++++.+|+|.+++|.++...+        ..+|.|+|+.+|.+.+||+++|+++|.+++++++|
T Consensus         8 ~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~s   87 (400)
T PRK06234          8 GFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVAAS   87 (400)
T ss_pred             CccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEEcC
Confidence            457999999854 445799999999999999987642        35688999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------
Q 019543           79 GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------  111 (339)
                      |++|+.+ +.++++|||+|+++++.|+.+...+.                                              
T Consensus        88 G~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~iesP~NPtG~v~d  167 (400)
T PRK06234         88 GMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLETPANPTLKVTD  167 (400)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEECCCCCCCCcCC
Confidence            9999975 55689999999999998877654321                                              


Q ss_pred             -HHHHHHHHHc--CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH--HHhcCC
Q 019543          112 -RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGS  186 (339)
Q Consensus       112 -~~I~~la~~~--g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~~~~~~  186 (339)
                       ++|.++|+++  |+++|+|++|+.+....++..++||+++|+||+++|+++++||++++++ +++++++..  +..+|.
T Consensus       168 l~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~-~~~~~l~~~~~~~~~g~  246 (400)
T PRK06234        168 IKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKE-EFINQVKLFGIKDMTGS  246 (400)
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecH-HHHHHHHHHHHHHhcCC
Confidence             9999999997  9999999999998877777788999999999999999988899999875 677777653  345789


Q ss_pred             CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHH
Q 019543          187 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALS  265 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~  265 (339)
                      .++|..+++++++|++++.|++++++|+++++++|+++|.|..|+||+++++|+|+++++++.+.|++++|.+. +.+.+
T Consensus       247 ~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~  326 (400)
T PRK06234        247 VIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEG  326 (400)
T ss_pred             CCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999994 56778


Q ss_pred             HHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          266 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       266 ~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .+|+++|+.+++++|||+.+|++++|+.++|..+++++++..|+++++||+|||+||++|||+||.+||+++
T Consensus       327 ~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~~~  398 (400)
T PRK06234        327 KVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALDLI  398 (400)
T ss_pred             HHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999864

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=9.7e-57  Score=433.36  Aligned_cols=327  Identities=40%  Similarity=0.638  Sum_probs=288.6

Q ss_pred             ccceeeccCCCC-CCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcH
Q 019543            9 VSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSG   79 (339)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG   79 (339)
                      ++|+++|++... ..++++.+|||+++||.+++.++        ..+|.|+|..+|++++||+++|+++|.+.+++++||
T Consensus         2 ~~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG   81 (418)
T TIGR01326         2 FETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVASG   81 (418)
T ss_pred             ccceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEccH
Confidence            579999998543 34689999999999999987541        335889999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------
Q 019543           80 MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------  111 (339)
Q Consensus        80 ~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------  111 (339)
                      ++|+.. +..++++||+|+++++.|+++...+.                                               
T Consensus        82 ~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl  161 (418)
T TIGR01326        82 QAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFAETIGNPAINVPDI  161 (418)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeecCH
Confidence            999985 45688999999999999987654321                                               


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChh-------------------
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-------------------  172 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-------------------  172 (339)
                      ++|+++|++||+++|+|++++.+....++..++|++++|+||+++|+|+++||+++.++.-                   
T Consensus       162 ~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a  241 (418)
T TIGR01326       162 EAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHG  241 (418)
T ss_pred             HHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCcccc
Confidence            9999999999999999999998877777777899999999999999999999888754210                   


Q ss_pred             -----------HHHHHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCc
Q 019543          173 -----------LAKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG  240 (339)
Q Consensus       173 -----------l~~~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~  240 (339)
                                 .+.+.+ ...+..|..++|..++++.++++++..|++++.+|+..++++|.++|+|..|+||++++||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~  321 (418)
T TIGR01326       242 LVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPH  321 (418)
T ss_pred             chhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCcc
Confidence                       001111 22335688889999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHhhhc-CCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          241 HELHYSQA-KGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       241 ~~~~~~~~-~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                      |+++++++ .|.|++++|++ ++.+.+.+|+++|+.+..++|||+.+|++++|+.++|+.++++++++.|+++++|||||
T Consensus       322 ~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~sv  401 (418)
T TIGR01326       322 HALAKKYLPKGFGAVLSFEIKGGREAGKKFIDALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSV  401 (418)
T ss_pred             HHHHHHhccCCCcceEEEEecCCHHHHHHHHHhCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEe
Confidence            99999998 68999999998 56677899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHh
Q 019543          319 GIEDVNDLISDLDKALR  335 (339)
Q Consensus       319 g~e~~~~li~~l~~al~  335 (339)
                      |+||++|||+||.+||+
T Consensus       402 GlE~~~dl~~dl~~Al~  418 (418)
T TIGR01326       402 GIENIDDIIADLEQALE  418 (418)
T ss_pred             cCCCHHHHHHHHHHhhC
Confidence            99999999999999985

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.3e-56  Score=428.91  Aligned_cols=326  Identities=28%  Similarity=0.442  Sum_probs=293.0

Q ss_pred             CCCCccceeeccCCC-CCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEE
Q 019543            5 EEPGVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~   75 (339)
                      +.++++|+++|.+.. .+.++++.+|||+|+||.|++.+        +..+|.|+|.++|++++||+++++++|++++++
T Consensus         6 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~   85 (394)
T PRK07050          6 PKRALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL   85 (394)
T ss_pred             CCCCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            457888999999854 34579999999999999998764        234689999999999999999999999999999


Q ss_pred             cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-------------------------------------------
Q 019543           76 FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-------------------------------------------  111 (339)
Q Consensus        76 ~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------------------------------  111 (339)
                      ++||++|+.+ +.++++|||+|+++++.|+++..++.                                           
T Consensus        86 ~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~Np~~~  165 (394)
T PRK07050         86 QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPGSVTME  165 (394)
T ss_pred             eccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcc
Confidence            9999999985 44689999999999999987654221                                           


Q ss_pred             ----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC
Q 019543          112 ----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  187 (339)
Q Consensus       112 ----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~  187 (339)
                          ++|+++|+++|+++++|++|++|...+++..|+|++++|++|+++|+++++||+++++++++.++++.++...|..
T Consensus       166 ~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~  245 (394)
T PRK07050        166 VPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG  245 (394)
T ss_pred             HhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence                8999999999999999999999988888888999999999999999998889999988778889998888888999


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC---CHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLAL  264 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~---~~~~  264 (339)
                      ++|.++++++++|+++..|++++++|+.+++++|+++|.|..|+||+++++|+|+++++++.+.|++++|++.   +.++
T Consensus       246 ~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~  325 (394)
T PRK07050        246 VSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQ  325 (394)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998889999999984   3577


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+|+++|+.+++++|||+.+|++. |+.++|...+     ..++.+++||||||+||++|||+||.+||++
T Consensus       326 ~~~~~~~l~~~~~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svGlE~~~dl~~dl~~al~~  391 (394)
T PRK07050        326 VDAFVEALELFAIGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIGLEDEADLIADLEQALEA  391 (394)
T ss_pred             HHHHHHcCCCCeeccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence            8999999999999999999999997 8777777653     2336679999999999999999999999986

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=2.9e-55  Score=421.84  Aligned_cols=329  Identities=29%  Similarity=0.448  Sum_probs=290.7

Q ss_pred             CCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CC----CCCcccCCCCchHHHHHHHHHhHhCCCeEE
Q 019543            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------EN----GPYDYTRSGNPTRDALESLLAKLDKADRAL   74 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~----~~~~y~r~~~~~~~~le~~la~~~g~~~~l   74 (339)
                      -+++++++|.+...++++++.||||+|+||.+++.+        +.    .+|.|+|.++|++++||+++|+++|++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l   95 (418)
T PLN02242         16 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAY   95 (418)
T ss_pred             CChHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Confidence            345688999988776668889999999999998753        11    348999999999999999999999999999


Q ss_pred             EcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH------------------------------------------
Q 019543           75 CFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS------------------------------------------  111 (339)
Q Consensus        75 ~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~------------------------------------------  111 (339)
                      +++||++|+.+ +.++++|||+|+++++.|+++...+.                                          
T Consensus        96 ~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~NP  175 (418)
T PLN02242         96 CTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNP  175 (418)
T ss_pred             EEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCCC
Confidence            99999999985 55689999999999998877654321                                          


Q ss_pred             -------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--
Q 019543          112 -------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--  182 (339)
Q Consensus       112 -------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--  182 (339)
                             ++|+++|++||++||+|++|+.. ..++...++||+++|+||+++|+++++||++++++ ++++.++..+.  
T Consensus       176 tG~v~dl~~I~~la~~~gi~livDea~~~~-~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~-~li~~l~~~~~~~  253 (418)
T PLN02242        176 TLTVADIPELARIAHEKGVTVVVDNTFAPM-VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-ELVNSMMDLHHGA  253 (418)
T ss_pred             CCcccCHHHHHHHHHHhCCEEEEECCCCcc-CCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCH-HHHHHHHHHhhhh
Confidence                   99999999999999999999643 34566678999999999999999988899998764 67787776633  


Q ss_pred             --hcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhc---CCCcceEEE
Q 019543          183 --AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA---KGAGSVLSF  257 (339)
Q Consensus       183 --~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~---~~~~~ivs~  257 (339)
                        ..|..+++..++++.++++++..|++++++|+++++++|++++ + .|.||++++||+|+++++++   .|.|++++|
T Consensus       254 ~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~-~-~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf  331 (418)
T PLN02242        254 LMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG-L-KVIYPGLEDHPQHALLKSMANKGYGFGGLLCL  331 (418)
T ss_pred             hhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC-C-EEECCCCCCCccHHHHHHhcccCCCceeEEEE
Confidence              4577889999999999999999999999999999999999995 3 78999999999999999998   589999999


Q ss_pred             eeCCHHHHHHHHccCCcc----eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC-HHHHHHHHHH
Q 019543          258 LTGSLALSKHVVETTKYF----SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDK  332 (339)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~----~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~-~~~li~~l~~  332 (339)
                      ++++.+.+.+|+++|+.+    .+++|||+.+|++++|+.++|..++.++++..|+++++||||+|+|+ .+|||+||.+
T Consensus       332 ~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~~~~dli~dl~~  411 (418)
T PLN02242        332 DMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEK  411 (418)
T ss_pred             EECCHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCCCHHHHHHHHHH
Confidence            998888899999999976    88999999999999999999999999999999999999999999995 9999999999


Q ss_pred             HHhcCCC
Q 019543          333 ALRTGPL  339 (339)
Q Consensus       333 al~~~~~  339 (339)
                      ||+++.+
T Consensus       412 al~~~~~  418 (418)
T PLN02242        412 ALSAMKL  418 (418)
T ss_pred             HHHHhhC
Confidence            9998643

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=5.1e-54  Score=407.86  Aligned_cols=318  Identities=36%  Similarity=0.539  Sum_probs=281.7

Q ss_pred             CccceeeccCCC-CCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-
Q 019543            8 GVSTLLMNFSNE-FDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-   85 (339)
Q Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-   85 (339)
                      .++|+++|.+.. .+.++++.+|||+|+||.|++..+..+|.|+|+.+|..++||+++|+++ .+++++++||++|+.+ 
T Consensus         3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~   81 (366)
T PRK07582          3 GDGTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGEPTGPDTYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAV   81 (366)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccccceEEccCccccCCceeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHH
Confidence            467999999854 4447999999999999999865445678899999999999999999999 6889999999999985 


Q ss_pred             HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------HHHHHHHHHc
Q 019543           86 VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------RKIAEMAHAH  121 (339)
Q Consensus        86 il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------~~I~~la~~~  121 (339)
                      +.++++|||+|+++++.|+++..++.                                            ++|+++|+++
T Consensus        82 l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~  161 (366)
T PRK07582         82 LRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAETPSNPGLDVCDLAALAAAAHAA  161 (366)
T ss_pred             HHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEECCCCCCCCccCHHHHHHHHHHc
Confidence            44689999999999999977654321                                            9999999999


Q ss_pred             CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh
Q 019543          122 GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  201 (339)
Q Consensus       122 g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~  201 (339)
                      |+++++|++|+.+....++.+++|++++|+||+++|+++.++|+++++++++.++++.++...|..++|+.+++++++|+
T Consensus       162 g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~  241 (366)
T PRK07582        162 GALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLG  241 (366)
T ss_pred             CCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Confidence            99999999998765556777889999999999999998888999998766788888888888889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          202 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      +++.|++++++|++.++++|+++|.|..|+||++++||+|+++++++.+.|++++|.+++.+++.+|+++++.+.+++||
T Consensus       242 tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~  321 (366)
T PRK07582        242 TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSF  321 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccC
Confidence            99999999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          282 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       282 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |+.+|++.++...           ..++++++||+|||+||++|||+||.+||+++
T Consensus       322 G~~~sl~~~~~~~-----------~~~~~~~liR~svGlE~~~dli~dl~~al~~~  366 (366)
T PRK07582        322 GGVHTSADRRARW-----------GDAVPEGFVRLSCGIEDTDDLVADLERALDAL  366 (366)
T ss_pred             CCccchhhhHHHc-----------CCCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            9999987443211           12267899999999999999999999999864

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=7e-54  Score=409.84  Aligned_cols=319  Identities=34%  Similarity=0.549  Sum_probs=282.9

Q ss_pred             eeeccCCCCCCCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHH
Q 019543           12 LLMNFSNEFDPYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (339)
Q Consensus        12 ~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~   83 (339)
                      .++|++...+.++++.+|||+|+||.|++.++        ..+|.|+|..+|++++||+++|+++|++++++|+||++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai   91 (389)
T PRK05968         12 ALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAI   91 (389)
T ss_pred             heeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence            36788777778999999999999999987542        3458999999999999999999999999999999999999


Q ss_pred             HH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------HHHHH
Q 019543           84 AA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------RKIAE  116 (339)
Q Consensus        84 ~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------~~I~~  116 (339)
                      .+ +..+++|||+|+++.+.|+++...+.                                              ++|++
T Consensus        92 ~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~  171 (389)
T PRK05968         92 SSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAA  171 (389)
T ss_pred             HHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHH
Confidence            75 55688999999999999987653221                                              89999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-hcCCCCChHHHHH
Q 019543          117 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGSGLAPFDCWI  195 (339)
Q Consensus       117 la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~~~~~~~~~~a~~  195 (339)
                      +|++||+++++|++|+.+...+++..++|++++|++|+++|+++.+||+++.++ +++++++..+. ..|..+++..+++
T Consensus       172 la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~-~~~~~l~~~~~~~~g~~~~~~~A~~  250 (389)
T PRK05968        172 LAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSK-EHIARINAEAYPYLGAKLSPFEAWL  250 (389)
T ss_pred             HHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECH-HHHHHHHHHHHHhCCCCCChHHHHH
Confidence            999999999999999998877788889999999999999999888899988764 67777776543 5688899999999


Q ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc
Q 019543          196 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF  275 (339)
Q Consensus       196 ~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~  275 (339)
                      ++++|+++..|++++++++++++++|+++|+|+.|.||++++||.     +++.+++++++|.+++...+.+|+++|+.+
T Consensus       251 ~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~-----~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~  325 (389)
T PRK05968        251 LLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP-----AGLSGTSGLFSFIFREGIDVRAFADALKLF  325 (389)
T ss_pred             HHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH-----HhCCCCceEEEEEECCHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999998883     345678999999997555788999999999


Q ss_pred             eeecccCCcccceeccccccCCC-CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          276 SITVSFGSVKSLISMPCFMSHAS-IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~-~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++++|+|+.+|+++ |+.++|.. .+.++++..|+++++||+|||+||++|||+||.+||++.
T Consensus       326 ~~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~~  387 (389)
T PRK05968        326 RLGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAAA  387 (389)
T ss_pred             EEecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            99999999999998 99899888 457889999999999999999999999999999999864

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=3.2e-53  Score=402.63  Aligned_cols=315  Identities=43%  Similarity=0.754  Sum_probs=284.7

Q ss_pred             CCccceeeccCCCC-CCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH
Q 019543            7 PGVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (339)
Q Consensus         7 ~~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~   85 (339)
                      ++++|+++|.+... +.++++.||||+||||.+++..+..+|.|+|.++|++++||+++|+++|++.+++++||++|+.+
T Consensus         3 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~   82 (366)
T PRK08247          3 STIETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIGESTGFDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQL   82 (366)
T ss_pred             CCcchhheeCCCCCCCCCCCccCCcccCcccccCCCCCcCCccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHH
Confidence            46789999998543 34799999999999999877555567999999999999999999999999999999999999987


Q ss_pred             HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           86 VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        86 il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                      ++.+++|||+|+++++.|+++..++.                                               ++|+++|
T Consensus        83 ~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la  162 (366)
T PRK08247         83 VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIA  162 (366)
T ss_pred             HHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHH
Confidence            77788999999999999998644322                                               9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      ++||+++|+|++++.+....++..++||+++|+||+++|+++.++|+++++++.+.+.++..+...+..++|..++++.+
T Consensus       163 ~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~  242 (366)
T PRK08247        163 KKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIR  242 (366)
T ss_pred             HHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHh
Confidence            99999999999999888777777789999999999999998889999998766788888877777788899999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                      +|+++..|++++++|++.++++|+++|+|..|.||+                .|++++|.+.+.+.+.+|.+.|+.+.++
T Consensus       243 ~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~----------------~gg~~sf~~~~~~~~~~~~~~l~~~~~~  306 (366)
T PRK08247        243 GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG----------------RGGMLSFRLQDEEWVNPFLKSLKLITFA  306 (366)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC----------------cCcEEEEEECCHHHHHHHHHcCCcceEc
Confidence            999999999999999999999999999999999885                4789999987777778999999999999


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +|+|+..+++.+|+.++|+.++++.|...|++++++|||+|+||.+|||+||.+||+++
T Consensus       307 ~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGlE~~~dl~~dl~~al~~~  365 (366)
T PRK08247        307 ESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGIENVEDLIADLKQAFKQV  365 (366)
T ss_pred             cCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999864

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=2.5e-28  Score=229.60  Aligned_cols=247  Identities=24%  Similarity=0.224  Sum_probs=190.1

Q ss_pred             CcccCC---CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCcc----chH-----------
Q 019543           47 YDYTRS---GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYG----GTD-----------  107 (339)
Q Consensus        47 ~~y~r~---~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~----~~~-----------  107 (339)
                      ...+|.   ..+.+.+||++||+|+|.|++++|+||+.||..++ +++++||.|+.+...+-    |..           
T Consensus        73 ~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H  152 (388)
T COG0156          73 AGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH  152 (388)
T ss_pred             CCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC
Confidence            345663   55889999999999999999999999999998655 58999998887654321    111           


Q ss_pred             -------HHHH---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc------c-CC
Q 019543          108 -------RLLS---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL------E-LG  143 (339)
Q Consensus       108 -------~~~~---------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~------~-~~  143 (339)
                             ..++                           ++|+++|++||++|+|||+|+.|++++   .+      . ..
T Consensus       153 nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~  232 (388)
T COG0156         153 NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEE  232 (388)
T ss_pred             CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCcc
Confidence                   1110                           999999999999999999999998753   21      1 23


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIA  218 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~  218 (339)
                      .||+++||+|+||    ..||+++++ ..+++.+++..+  +|++.++|..++.+...++   ..++++++++++..++.
T Consensus       233 vdi~~gTlsKAlG----s~Gg~v~g~-~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~  307 (388)
T COG0156         233 VDIIVGTLGKALG----SSGGYIAGS-AALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFR  307 (388)
T ss_pred             ceEEEEEchhhhc----ccCceeeCc-HHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            4899999999999    458899886 478999988644  6799999998776655554   45688888899998888


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCC
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      ..++...      ++.             ..+.++|+++.++++..+.++.+.|...|+.++.      +.+|.+     
T Consensus       308 ~~~~~~~------~~~-------------~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~------i~~PTV-----  357 (388)
T COG0156         308 SLLKALG------LVL-------------LPSESPIIPVILGDEERALEASRALLEEGIYVSA------IRPPTV-----  357 (388)
T ss_pred             HHHHhcC------Ccc-------------CCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEee------ecCCCC-----
Confidence            6665432      111             1236899999999999999999998776776652      445644     


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                       |        ....+||+++...|+++.|+.+.++|.+.
T Consensus       358 -p--------~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         358 -P--------KGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             -C--------CCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence             1        14578999999999999999999999764

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=4.4e-25  Score=206.29  Aligned_cols=264  Identities=20%  Similarity=0.226  Sum_probs=190.5

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH--hcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH--LLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~--ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+|.+++||+.++++.|+++++.++||++|+.+.+.  -++|||+||+++.+|.++.+.+-                   
T Consensus        32 ~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid  111 (374)
T COG0399          32 GGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNID  111 (374)
T ss_pred             cChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCC
Confidence            378999999999999999999999999999986443  47999999999999988765432                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--CcccCCCeEEEecc--ccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSA--TKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~~~~~~Di~~~S~--sK~l~g~~~  160 (339)
                                                 ++|.++|++||++||+|.+|+.|...  +..+.-.|+.++||  +|.++.   
T Consensus       112 ~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~itt---  188 (374)
T COG0399         112 PDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTT---  188 (374)
T ss_pred             HHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccc---
Confidence                                       99999999999999999999998654  33443459999998  799983   


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh----------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA----------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~----------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      ..||++++++++++++++.++..                +...|+.+.|++++.+|+.+++..++++++++.+.+.|+++
T Consensus       189 gEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~  268 (374)
T COG0399         189 GEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGL  268 (374)
T ss_pred             cCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            37999999999999999877641                23567888999999999999999999999999999999998


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccceeccccccC-----CC
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-----AS  298 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h-----~~  298 (339)
                      +++.   .|..+...         .+...++++.+.+. ....++.+.|++.|++ ....+..+..+|+...-     ..
T Consensus       269 ~~~~---~p~~~~~~---------~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~-~~~~~~P~~~~~~~~~~~~~~~~~  335 (374)
T COG0399         269 PGIT---LPPEPDGA---------VHAWHLYTILVDEEGISRDALMESLKEAGVG-AVVYFRPLHLQPAYRQLGYFPEGD  335 (374)
T ss_pred             CCcc---ccCCCCCc---------eeeeeeeEEEecCCCCCHHHHHHHHHhCCCC-ceEEeeccccchhhhcccccccCC
Confidence            7643   23211111         12345777777543 4456788888887776 22333223222221111     12


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|.    ...+..+.+++=+...=.++.++++.++|++
T Consensus       336 lp~----ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~  369 (374)
T COG0399         336 LPN----AEDLSERILSLPLHPNLSEEDVDRVIEALKE  369 (374)
T ss_pred             Cch----HHHHhhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            221    1112345677766655455555566655543

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.93  E-value=8.2e-25  Score=210.40  Aligned_cols=233  Identities=17%  Similarity=0.162  Sum_probs=175.0

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-h--------------cCCCCEEEEcCCCcc----chH-------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L--------------LGTGEEIVAGDDLYG----GTD-------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-l--------------l~~GD~Vi~~~~~y~----~~~-------  107 (339)
                      .+.+++||++||+++|.|++++|+||+.||.+++. +              .+.+|.|+++...+.    |..       
T Consensus       146 ~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~  225 (476)
T PLN02955        146 TTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGN  225 (476)
T ss_pred             hHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCC
Confidence            36789999999999999999999999999986554 3              246777887664332    221       


Q ss_pred             ---------------HHHH------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------
Q 019543          108 ---------------RLLS------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------  139 (339)
Q Consensus       108 ---------------~~~~------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------  139 (339)
                                     ..++                        ++|.++|++||+.||+||+|+.|+.+.   +      
T Consensus       226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g  305 (476)
T PLN02955        226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFN  305 (476)
T ss_pred             ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhC
Confidence                           1111                        999999999999999999999887643   1      


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHH
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNA  214 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a  214 (339)
                      +....||+++||+|++|    ..||++++++ ++++.+++..+  ++++.++|..++.++.+++.+   +.+++++++|.
T Consensus       306 ~~~di~ii~~TLsKA~G----~~GGfi~gs~-~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~  380 (476)
T PLN02955        306 CEADVDLCVGTLSKAAG----CHGGFIACSK-KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERV  380 (476)
T ss_pred             CCCCCcEEEEeCccchh----ccCceeecHH-HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            12246899999999998    4579998875 67788876544  467888887766665555443   56777888888


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +++.+.+    ++     +                -.++|+++.++++..+.++.+.|...|+.++.      +.+|.+.
T Consensus       381 ~~fr~~~----G~-----~----------------~~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~------i~yPtVP  429 (476)
T PLN02955        381 KEFKALS----GV-----D----------------ISSPIISLVVGNQEKALKASRYLLKSGFHVMA------IRPPTVP  429 (476)
T ss_pred             HHHHHhc----CC-----C----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEE------ECCCCCC
Confidence            8877631    11     1                03689999999999999999999888877663      4566541


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                    ....+|||++...|+++.|+.+.++|++
T Consensus       430 --------------~g~~rLRi~lsA~Ht~edId~lv~~L~~  457 (476)
T PLN02955        430 --------------PNSCRLRVTLSAAHTTEDVKKLITALSS  457 (476)
T ss_pred             --------------CCCceEEEeeCCCCCHHHHHHHHHHHHH
Confidence                          1346899999999999999999998864

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.92  E-value=1.4e-23  Score=201.29  Aligned_cols=254  Identities=13%  Similarity=0.152  Sum_probs=175.0

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHH------------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRL------------------  109 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~------------------  109 (339)
                      |+|.  +.+++||+++|+++|.+++++|+||++|+.. +.++++|||+|+++++.|.++...                  
T Consensus        39 yg~~--~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~~  116 (392)
T PLN03227         39 YGTI--DAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKD  116 (392)
T ss_pred             cCCh--HHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHHH
Confidence            5543  4899999999999999999999999999875 556899999999998866543210                  


Q ss_pred             -------H-------------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---------c-
Q 019543          110 -------L-------------S-------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---------L-  140 (339)
Q Consensus       110 -------~-------------~-------------------~~I~~la~~~g~~livD~a~a~g~~~~~---------~-  140 (339)
                             +             +                   ++|.++|++||+++|+||+|++|..++.         + 
T Consensus       117 l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~  196 (392)
T PLN03227        117 LRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLK  196 (392)
T ss_pred             HHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCC
Confidence                   0             1                   8999999999999999999987755321         1 


Q ss_pred             -cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH--HhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHH
Q 019543          141 -ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNA  214 (339)
Q Consensus       141 -~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~--~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a  214 (339)
                       ..++|++++|+||+++    ..||++++++ ++++.++...  ..++..++|..++.+...+..   .+.++++.+++.
T Consensus       197 p~~~~Div~~slsk~~g----~~gg~v~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~  271 (392)
T PLN03227        197 PMVHAEIVTFSLENAFG----SVGGMTVGSE-EVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSI  271 (392)
T ss_pred             CCCCceEEEeechhhhh----ccCcEEecCH-HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence             2367999999999987    4578887764 6666665432  235666778766655544433   356788888999


Q ss_pred             HHHHHHHhC--CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHH---------HHHHccCCcceeeccc-C
Q 019543          215 QKIAEFLAS--HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALS---------KHVVETTKYFSITVSF-G  282 (339)
Q Consensus       215 ~~l~~~L~~--~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~---------~~~~~~L~~~~i~v~~-G  282 (339)
                      +++.+.|+.  ++.+..+.. ++...         ....++|++|.+++...+         .++.+.+.+.|+.+.. |
T Consensus       272 ~~l~~~L~~~~~~~~~~~rg-~~~~~---------~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~  341 (392)
T PLN03227        272 ANLYSTLTNSSHPYALKLRN-RLVIT---------SDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTG  341 (392)
T ss_pred             HHHHHHHHhcCCcccccccc-ccccC---------CCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecc
Confidence            999999974  222222211 11000         123578999999764332         3777777777776642 2


Q ss_pred             CcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          283 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       283 ~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .. .....|.                +++..||+++...++++.|+.+.++|++
T Consensus       342 ~~-~~~~~~~----------------~P~~~iR~~~~~~~t~eei~~~~~~l~~  378 (392)
T PLN03227        342 GH-VKKFLQL----------------VPPPCLRVVANASHTREDIDKLLTVLGE  378 (392)
T ss_pred             cc-cCCcCCC----------------CCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            11 1111121                2457899999999998888888777764

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.91  E-value=1.8e-23  Score=198.62  Aligned_cols=264  Identities=22%  Similarity=0.250  Sum_probs=191.8

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH--hcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH--LLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~--ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ++.+++||+++++++|.++++.++||++|+.+.+.  -+++||+|+++..++.++...+.                    
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~  103 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDP  103 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-H
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCH
Confidence            78999999999999999999999999999986554  36799999999999988765443                    


Q ss_pred             --------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--CcccCCCeEEEecc--ccccccCCCc
Q 019543          112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSA--TKFIAGHSDV  161 (339)
Q Consensus       112 --------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~~~~~~Di~~~S~--sK~l~g~~~~  161 (339)
                                                ++|.++|++||++||+|.+|+.|...  +..+...|+.++||  +|.++.   .
T Consensus       104 ~~~~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~---g  180 (363)
T PF01041_consen  104 EALEKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITT---G  180 (363)
T ss_dssp             HHHHHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-S---S
T ss_pred             HHHHHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcC---C
Confidence                                      99999999999999999999998643  34444459999998  699963   3


Q ss_pred             eEEEEEEcChhHHHHHHHHHHh-----------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          162 MAGVLAVKGERLAKELYFLQNA-----------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~-----------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .||+|+++++++.++++.+++.                 +...|+++.|++++.+|+.++.+.++++++++++.+.|++.
T Consensus       181 eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~  260 (363)
T PF01041_consen  181 EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGI  260 (363)
T ss_dssp             S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTG
T ss_pred             CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence            5899999998999998876531                 12568899999999999999999999999999999999999


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceeccccccC-----C
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH-----A  297 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h-----~  297 (339)
                      +++.....|....           ......+++.+.+.  ....++.+.|+..||.++......+..+|....+     .
T Consensus       261 ~~~~~~~~~~~~~-----------~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~  329 (363)
T PF01041_consen  261 PGIKPPPIPDGAE-----------RSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPG  329 (363)
T ss_dssp             TTEEEEGCGTTTE-----------EBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETS
T ss_pred             CCccccccccccc-----------ccccccccccccccccchHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccC
Confidence            9876544332111           01345677777543  2356788888888988886553333333432111     1


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .+|.    ..-+.+..|.+-+...-.++.++.+.++++
T Consensus       330 ~~P~----ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  330 DLPN----AERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             SSHH----HHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             CCHH----HHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence            1221    111234567787777667777888888764

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.91  E-value=9.8e-23  Score=196.75  Aligned_cols=252  Identities=21%  Similarity=0.156  Sum_probs=168.2

Q ss_pred             CCCcccCC--CCchHHHHHH----HHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------
Q 019543           45 GPYDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------  107 (339)
Q Consensus        45 ~~~~y~r~--~~~~~~~le~----~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------  107 (339)
                      .++.++|.  ++|.+++||+    ++++++|.+++++ ++||++|+.+ +.++++|||+|++++..|.+..         
T Consensus        58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~  137 (416)
T PRK13034         58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLS  137 (416)
T ss_pred             CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceec
Confidence            45677786  6799999999    9999999999976 5899999985 5568999999999876554410         


Q ss_pred             ------------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc---
Q 019543          108 ------------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL---  140 (339)
Q Consensus       108 ------------------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~~~~---  140 (339)
                                              ..+.                    ++|.++|++||++|++|+||+.|....+.   
T Consensus       138 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~  217 (416)
T PRK13034        138 GKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPN  217 (416)
T ss_pred             cceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCC
Confidence                                    0110                    89999999999999999999988764322   


Q ss_pred             c-CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC---CCCChHHHHHHHhchhh----HHHHHHHHHH
Q 019543          141 E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG---SGLAPFDCWICLRGVKT----MALRVEKQQD  212 (339)
Q Consensus       141 ~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~---~~~~~~~a~~~~~~l~~----~~~r~~~~~~  212 (339)
                      . .++|++++|++|+++|+.   ||+++++++.+.++++... +.+   ...++..++++...++.    ..++.++.++
T Consensus       218 ~~~~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~  293 (416)
T PRK13034        218 PFPHAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAV-FPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIA  293 (416)
T ss_pred             CCCCceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhc-CCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            1 257999999999997653   7888887755555554432 222   23344444433333332    2345788889


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHHccCCcceeeccc-CCcccceec
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSF-GSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~~~L~~~~i~v~~-G~~~s~~~~  290 (339)
                      |++++++.|++. ++..+. +               .+.++++++.+++.. ....+.+.|+..|+.++. +... -+..
T Consensus       294 ~a~~l~~~L~~~-G~~~~~-~---------------~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~-~~~~  355 (416)
T PRK13034        294 NAQALAEVLKER-GYDLVS-G---------------GTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPG-DTES  355 (416)
T ss_pred             HHHHHHHHHHHc-CCEecc-C---------------CCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCC-CCcC
Confidence            999999999876 543221 1               124678888886543 334455677777776652 1000 0111


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  335 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~  335 (339)
                      |.                 .+..||+|+..    .+.++.++.+.++|+
T Consensus       356 p~-----------------~~~~lR~~~~~~t~~~~~~~di~~l~~~l~  387 (416)
T PRK13034        356 PF-----------------VTSGIRIGTPAGTTRGFGEAEFREIANWIL  387 (416)
T ss_pred             CC-----------------CCCeeEeCcHHHHhCCCCHHHHHHHHHHHH
Confidence            21                 24679999887    444555556655554

>PLN02483 serine palmitoyltransferase

Probab=99.90  E-value=3.3e-22  Score=196.48  Aligned_cols=240  Identities=16%  Similarity=0.153  Sum_probs=168.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+.+++||+++|+++|.+++++|++|++++.+ +.++++|||+|+++++.|......++                    
T Consensus       144 ~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~  223 (489)
T PLN02483        144 TTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEV  223 (489)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCCCHHHHHHH
Confidence            357899999999999999999999999999875 44589999999999886654321110                    


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------cc-cCCCe
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PL-ELGAD  145 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~-~~~~D  145 (339)
                                                          ++|+++|++||++||+||+|+.|..+.         .. ..+.|
T Consensus       224 l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~d  303 (489)
T PLN02483        224 LREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVD  303 (489)
T ss_pred             HHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCc
Confidence                                                789999999999999999998665321         11 23568


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---------HHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---------MALRVEKQQDNA  214 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---------~~~r~~~~~~~a  214 (339)
                      |+++||||++++    .||++++++ ++++.++....  .++..++|..+..+...|+.         ..+++++.+++.
T Consensus       304 I~~~SfSKs~g~----~GG~i~~~~-~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~  378 (489)
T PLN02483        304 IMMGTFTKSFGS----CGGYIAGSK-ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENS  378 (489)
T ss_pred             EEEEecchhccc----CceEEEcCH-HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHH
Confidence            999999999985    368998764 78888876532  23455565544444444432         235677888999


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +++.+.|+++ ++. +..+                ..++++++.+.......+|++.|.+.|+.+...+      .|+. 
T Consensus       379 ~~l~~~L~~~-G~~-v~~~----------------~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~------fp~~-  433 (489)
T PLN02483        379 NFFRSELQKM-GFE-VLGD----------------NDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVG------FPAT-  433 (489)
T ss_pred             HHHHHHHHHC-CCc-ccCC----------------CCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeC------CCCC-
Confidence            9999999886 332 1111                1357888887666666788888877787766211      2221 


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                           +        ...+.+||+++..++++.++.+.++|+
T Consensus       434 -----p--------~~~~~vRi~isa~~t~edId~~l~~L~  461 (489)
T PLN02483        434 -----P--------LLLARARICISASHSREDLIKALEVIS  461 (489)
T ss_pred             -----C--------CCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence                 0        124679999998777766666665554

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.90  E-value=4.1e-22  Score=191.23  Aligned_cols=248  Identities=14%  Similarity=0.164  Sum_probs=170.1

Q ss_pred             CCcccC---CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           46 PYDYTR---SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        46 ~~~y~r---~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      ++..+|   +..+.+++||+++|+++|.+++++|+||++|+.+++ ++++|||+|+++++.|......+.          
T Consensus        71 ~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~  150 (393)
T TIGR01822        71 GMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA  150 (393)
T ss_pred             CCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC
Confidence            344455   235678999999999999999999999999998654 588999999999887765432111          


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c----c--cCC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P----L--ELG  143 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~----~--~~~  143 (339)
                                                             ++|+++|++||+++|+|++|+.|..+.   .    .  ..+
T Consensus       151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~  230 (393)
T TIGR01822       151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGR  230 (393)
T ss_pred             CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCC
Confidence                                                   899999999999999999998775421   1    1  125


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIA  218 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~  218 (339)
                      .|++++|+||+++|.   .+|+++++ +++.+.++....  .++...++...+.+...++.   .+...++..++.+++.
T Consensus       231 ~di~~~s~sK~l~g~---r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~  306 (393)
T TIGR01822       231 VDIITGTLGKALGGA---SGGFTTAR-KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFR  306 (393)
T ss_pred             CeEEEEEChHHhhCC---CcEEEEeC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            799999999999853   47898876 467777765322  23444455433333334433   3445667778888888


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCC
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      +.|++. ++..  .+                +.++++++.+.+.....+|++.|...|+.++ |..     .|..     
T Consensus       307 ~~L~~~-g~~~--~~----------------~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~-~~~-----~~~~-----  356 (393)
T TIGR01822       307 ERMEAA-GFDI--KP----------------ADHPIIPVMLYDAVLAQRFARRLLEEGIYVT-GFF-----YPVV-----  356 (393)
T ss_pred             HHHHHc-CCCC--CC----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEe-eeC-----CCCC-----
Confidence            888764 3321  11                1345777777665556788888877788776 422     1211     


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       +        -....+|+|++..++++.|+.+.++|++
T Consensus       357 -~--------~~~~~iRis~~~~~t~edi~~~~~~l~~  385 (393)
T TIGR01822       357 -P--------KGQARIRVQISAAHTEEQLDRAVEAFTR  385 (393)
T ss_pred             -C--------CCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence             0        0235699999998877777777777654

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.89  E-value=1.3e-22  Score=178.42  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=181.7

Q ss_pred             CCcccCC---CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCC----CccchHH--------H
Q 019543           46 PYDYTRS---GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDD----LYGGTDR--------L  109 (339)
Q Consensus        46 ~~~y~r~---~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~----~y~~~~~--------~  109 (339)
                      +...+|.   ....++.||..+|++.+.|++++++||+.||..++ +++.|.|-|+.+..    +.+|.+-        +
T Consensus       100 GlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLckry~h~dv  179 (417)
T KOG1359|consen  100 GLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKRYRHVDV  179 (417)
T ss_pred             CccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHhhhccchh
Confidence            3444443   44679999999999999999999999999998544 58999999886543    2233220        0


Q ss_pred             HH-------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEe
Q 019543          110 LS-------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMH  149 (339)
Q Consensus       110 ~~-------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~  149 (339)
                      +.                               ++|.+|++|||++|++||+|++|+++.   .      ....+|+..+
T Consensus       180 ~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiins  259 (417)
T KOG1359|consen  180 FDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINS  259 (417)
T ss_pred             HHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhh
Confidence            00                               999999999999999999999987642   2      1234689999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      +++|++||   ..||+..++. .++..+++..+  .++..++|.....+...++.   -....++...+.+++++..+..
T Consensus       260 TLgKAlGg---a~GGyttgp~-~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a  335 (417)
T KOG1359|consen  260 TLGKALGG---ASGGYTTGPK-PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA  335 (417)
T ss_pred             hhhhhhcC---CCCCCccCCh-hHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999985   4589998875 68888877654  56888998765444444433   2445666778888898877653


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                       ++. +.                 ....+|+|+.+|+...+.++++.|...|+.|- |     +.+|.+      |    
T Consensus       336 -Gft-Is-----------------g~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vi-g-----fs~PvV------P----  380 (417)
T KOG1359|consen  336 -GFT-IS-----------------GASHPICPVMLGDARLASKMADELLKRGIYVI-G-----FSYPVV------P----  380 (417)
T ss_pred             -Cce-ec-----------------CCCCCccceecccHHHHHHHHHHHHhcCceEE-e-----ecCCcC------C----
Confidence             322 11                 11247999999999889999998877777653 3     345554      1    


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                          ..+.+||+.++..|+++.|+.+.+|+.+
T Consensus       381 ----~gkariRVqiSAaHt~edid~~i~Af~~  408 (417)
T KOG1359|consen  381 ----KGKARIRVQISAAHTEEDIDRLIEAFSE  408 (417)
T ss_pred             ----CCceEEEEEEehhcCHHHHHHHHHHHHH
Confidence                1457899999999999999999988864

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.89  E-value=1.9e-21  Score=183.59  Aligned_cols=260  Identities=19%  Similarity=0.225  Sum_probs=183.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-h-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..+++|+.+++++|.+++++++||++|+..++. + ++|||+|+++.+.|.++...+.                   
T Consensus        16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d   95 (352)
T cd00616          16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNID   95 (352)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcC
Confidence            468899999999999999999999999999986554 5 5899999999987765543221                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc--ccCCCeEEEeccc--cccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~--~~~~~Di~~~S~s--K~l~g~~~  160 (339)
                                                 ++|.++|+++|+++|+|++|+.|.....  .....|+.++|++  |+++++  
T Consensus        96 ~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~--  173 (352)
T cd00616          96 PELIEAAITPRTKAIIPVHLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG--  173 (352)
T ss_pred             HHHHHHhcCcCCeEEEEECCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc--
Confidence                                       9999999999999999999988754322  2333588999976  999632  


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh---------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA---------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~---------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                       .||+++++++++.++++..+..               ++..++++.+++++..++.++...++++++++++.+.|++++
T Consensus       174 -~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~  252 (352)
T cd00616         174 -EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKELLADLP  252 (352)
T ss_pred             -CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC
Confidence             4788888776777777654321               124567788888877788888888888999999999999988


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceeccccccCCCC----
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI----  299 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~----  299 (339)
                      +++.+..+.   +.         ....++++|.+++  .....++.+.|+..||.++..      ..|  ..|...    
T Consensus       253 g~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~------~~~--~~~~~~~~~~  312 (352)
T cd00616         253 GIRLPDVPP---GV---------KHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVH------YPP--LHHQPPYKKL  312 (352)
T ss_pred             CccCCCCCC---CC---------ceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeee------cCc--cccCHhhhhc
Confidence            875332110   00         1135788998863  334567777777767654421      111  111110    


Q ss_pred             ---C-HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          300 ---P-VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       300 ---~-~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                         . .......-+..+.||++++...+++.++.+.++|+
T Consensus       313 ~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         313 LGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             cCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence               0 00000111235789999999999999999999875

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=3.8e-21  Score=183.26  Aligned_cols=268  Identities=14%  Similarity=0.085  Sum_probs=186.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++.++++|+.+++++|.+++++++||++|+.++ .++ ++|||+|++++++|.++...+.                   
T Consensus        29 ~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d  108 (376)
T TIGR02379        29 DGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNID  108 (376)
T ss_pred             CcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCC
Confidence            3688999999999999999999999999999754 445 7999999999999987654332                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCC--cCcccCCCeEEEecc--ccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSA--TKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~--~~~~~~~~Di~~~S~--sK~l~g~~~  160 (339)
                                                 ++|.++|++||++||+|++|+.|..  +++.....|+.++||  +|.++.  +
T Consensus       109 ~~~le~~i~~~tk~Iip~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~--g  186 (376)
T TIGR02379       109 ETLIESAITHRTKAIVPVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTS--G  186 (376)
T ss_pred             HHHHHHhcCcCceEEEEeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcc--c
Confidence                                       9999999999999999999988753  334443348888887  466653  2


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh---------------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~---------------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~  219 (339)
                      ..||+++++++++.++++.++..                     ++..++.+.|++++.+|+.++...++++++++++.+
T Consensus       187 ~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~  266 (376)
T TIGR02379       187 GEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQD  266 (376)
T ss_pred             CCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35899989888898888877641                     123466788888999999999999999999999999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC---
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH---  296 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h---  296 (339)
                      .|+.++.-..+..|..+...         ....+++++.+.+.....++.+.|+..||.++.+. ..+..+|....+   
T Consensus       267 ~L~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~~-~p~~~~~~~~~~~~~  336 (376)
T TIGR02379       267 ALKPLEEKGIIELPSIPNGC---------QHNAHMFYIKLKDEDDRNELIKYLKEQEIMAVFHY-VPLHSSPAGRYFGRF  336 (376)
T ss_pred             HhccCCcCCeeeCCCCCCCC---------eeeeEEEEEEECCcCCHHHHHHHHHHCCCCccccC-cCCCcchhHHhhCCC
Confidence            99876521112233222111         11224666766543345678888888898877543 233333321111   


Q ss_pred             -CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 -ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 -~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       .++|.    ...+..+.|.+=+...-.++.++.+.+++++
T Consensus       337 ~~~~p~----~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~  373 (376)
T TIGR02379       337 HGEDIY----TTKESERLVRLPLYYGLSKEDQARVIQTICD  373 (376)
T ss_pred             CCCChH----HHHHHhceEEccCCCCCCHHHHHHHHHHHHH
Confidence             12221    1112345677776666667777788877765

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=5.7e-21  Score=182.68  Aligned_cols=250  Identities=26%  Similarity=0.297  Sum_probs=173.5

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcH-HHHHHHHH-Hh---cCCCCEEEEcCCCccchHHHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSG-MAALAAVT-HL---LGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG-~~A~~~il-~l---l~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ...++.++.+|+++|++  +.++|+.| +.|+..+. .+   +++||+||+++..++++...+.                
T Consensus        66 ~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~  145 (405)
T COG0520          66 DLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD  145 (405)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC
Confidence            46788999999999976  55666666 78887644 34   6999999999988776542221                


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~  154 (339)
                                                          ++|+++||++|++++||.+|+.|+. .+...+++|++++|.+|+
T Consensus       146 ~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKw  225 (405)
T COG0520         146 DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKW  225 (405)
T ss_pred             CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEccccc
Confidence                                                9999999999999999999999876 355578999999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHH---------------------HhcCCCCChHHHHH----HHhchhhH--HHHH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWI----CLRGVKTM--ALRV  207 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~a~~----~~~~l~~~--~~r~  207 (339)
                      +.||.+  .|++++++ ++.+.+....                     .-+-.+.+.....+    +++.++.+  ....
T Consensus       226 l~gP~G--iGvLy~r~-~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~  302 (405)
T COG0520         226 LLGPTG--IGVLYVRK-ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIE  302 (405)
T ss_pred             ccCCCc--eEEEEEch-HHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHH
Confidence            888854  57888886 5655552110                     00111222222222    22222222  2334


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      +..++..+++.+.|+++|+++....+.              ...+++++|.+.+. .+..++..|...+|.++.|.    
T Consensus       303 ~~e~~L~~~~~~~L~~~~~v~i~g~~~--------------~~r~~~vsF~v~~~-~~~dv~~~L~~~gI~vr~g~----  363 (405)
T COG0520         303 AHERELTEYLLEGLSELPGVEIYGPPD--------------ADRGGIVSFNVKGI-HPHDVATLLDEKGIAVRAGH----  363 (405)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEecCCc--------------ccCceEEEEEeCCC-CHHHHHHHHHhCCeEEEecc----
Confidence            444566888899999999986443321              12679999998655 34566777777889999875    


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                        +|+...|.        ..|+. +.+|+|++..++++.|+.|.++|+++
T Consensus       364 --~ca~p~~~--------~~~~~-~~iR~S~~~YNt~edid~l~~aL~~~  402 (405)
T COG0520         364 --HCAQPLHR--------LLGVD-ATIRASLHLYNTEEDVDRLLEALKKA  402 (405)
T ss_pred             --ccccHHHH--------hcCCC-CceEEEEeecCCHHHHHHHHHHHHHH
Confidence              44432232        23333 45999999999999999999999874

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.88  E-value=6.4e-21  Score=182.34  Aligned_cols=264  Identities=20%  Similarity=0.224  Sum_probs=184.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..++||+.+++++|.+++++++||++|+.+++ ++ ++|||+|+++++.|.++...+.                   
T Consensus        27 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d  106 (380)
T TIGR03588        27 QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNID  106 (380)
T ss_pred             CChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence            46789999999999999999999999999998655 45 7899999999988765542211                   


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCC----CeEEEeccc--cc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELG----ADIVMHSAT--KF  154 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~----~Di~~~S~s--K~  154 (339)
                                                     ++|.++|++||++||+|++|+.|...+....+    .|+.++|++  |+
T Consensus       107 ~~~l~~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~  186 (380)
T TIGR03588       107 EDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKI  186 (380)
T ss_pred             HHHHHHHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCc
Confidence                                           89999999999999999999988543333333    499999986  88


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh-------------------------cCCCCChHHHHHHHhchhhHHHHHHH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA-------------------------EGSGLAPFDCWICLRGVKTMALRVEK  209 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-------------------------~~~~~~~~~a~~~~~~l~~~~~r~~~  209 (339)
                      ++.+   .||+++++++++.++++.++..                         ++..|+.+.+++++.+|+.++.+.++
T Consensus       187 ~~~~---~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~  263 (380)
T TIGR03588       187 ITTA---EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAK  263 (380)
T ss_pred             cccc---CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence            8742   5899998887888877654320                         12456778888888899999999999


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccc
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++++++++.+.|+..+.+... .+.  ...         .....++++.+..  .....++.+.|+..||.++.... .+
T Consensus       264 r~~~~~~~~~~L~~~~~~~~~-~~~--~~~---------~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~-~~  330 (380)
T TIGR03588       264 RREIAARYDRLLKDLPYFTPL-TIP--LGS---------KSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYI-PV  330 (380)
T ss_pred             HHHHHHHHHHHhcCCCCccCC-CCC--CCC---------EeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCc-cc
Confidence            999999999999998865421 110  000         0011234444432  12356777888888888774421 22


Q ss_pred             eecccccc---CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMS---HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~---h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...|....   +..+|..    .-+..+.|++.+...-+++.++.+.+++++
T Consensus       331 ~~~~~~~~~~~~~~~p~a----~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~  378 (380)
T TIGR03588       331 HLQPYYRQGFGDGDLPSA----ENFYLAEISLPLHPALTLEQQQRVVETLRK  378 (380)
T ss_pred             ccChhhhccCCcCCCcHH----HHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence            22222111   1112211    113457899999887778888888888875

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.88  E-value=1.1e-20  Score=183.22  Aligned_cols=216  Identities=17%  Similarity=0.060  Sum_probs=161.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh---------cCCCCEEEEcCCCccchHHHHH-----------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL---------LGTGEEIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l---------l~~GD~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      .++.+++||+++|+++|.+++++++||++|+..++ .+         ++|||+||+++++|.++...+.           
T Consensus        61 ~G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv  140 (438)
T PRK15407         61 TGRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV  140 (438)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence            46778999999999999999999999999997543 33         5899999999998876653322           


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cccCCCeEEEecc--c
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--T  152 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~~~~Di~~~S~--s  152 (339)
                                                         ++|.++|++||++||+|++|+.|...+  ..+...|+.++||  +
T Consensus       141 d~~~~~id~~~le~~i~~~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~  220 (438)
T PRK15407        141 ELPTYNIDASLLEAAVSPKTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPA  220 (438)
T ss_pred             CCCcCCcCHHHHHHHcCcCCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCC
Confidence                                               999999999999999999999886533  3333349999998  4


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHh---------------------------------------cCCCCChHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNA---------------------------------------EGSGLAPFDC  193 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~---------------------------------------~~~~~~~~~a  193 (339)
                      |.+..   ..||+|+++++++.++++.+++.                                       +...|+++.|
T Consensus       221 k~~~~---geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~A  297 (438)
T PRK15407        221 HHITM---GEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQA  297 (438)
T ss_pred             CCccc---cCceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHH
Confidence            77763   24899999998888877765431                                       1246788999


Q ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHcc
Q 019543          194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVET  271 (339)
Q Consensus       194 ~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~  271 (339)
                      ++++.+|+.+++++++++++++++.+.|+..+++.  ..|..+...         ......+++.+.+.  ....+|.+.
T Consensus       298 Aig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~--~~~~~~~~~---------~~~~~~~~i~~~~~~~~~Rd~l~~~  366 (438)
T PRK15407        298 AIGLAQLEKLPGFIEARKANFAYLKEGLASLEDFL--ILPEATPNS---------DPSWFGFPITVKEDAGFTRVELVKY  366 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc--ccCcCCCCC---------eeEEEEEEEEECCcCCCCHHHHHHH
Confidence            99999999999999999999999999999876531  123211110         01123566666432  234678888


Q ss_pred             CCcceeecccC
Q 019543          272 TKYFSITVSFG  282 (339)
Q Consensus       272 L~~~~i~v~~G  282 (339)
                      |+..||.++..
T Consensus       367 L~~~GI~~~~~  377 (438)
T PRK15407        367 LEENKIGTRLL  377 (438)
T ss_pred             HHHCCCCcccc
Confidence            88888877643

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.87  E-value=2e-20  Score=178.55  Aligned_cols=267  Identities=14%  Similarity=0.101  Sum_probs=183.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      ..+.++++|+++++++|.+++++++||++|+.++ ..+ ++|||+|+++.++|.++...+.                   
T Consensus        29 ~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d  108 (375)
T PRK11706         29 DGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNID  108 (375)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence            3678899999999999999999999999999754 443 7899999999999887654332                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCC--cCcccCCCeEEEeccc--cccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSAT--KFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~--~~~~~~~~Di~~~S~s--K~l~g~~~  160 (339)
                                                 ++|.++|++||++||+|++|+.|..  +++.....|+.++||+  |.++. | 
T Consensus       109 ~~~le~~i~~~tk~i~~~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~-g-  186 (375)
T PRK11706        109 ETLIEAAITPKTRAIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTA-G-  186 (375)
T ss_pred             HHHHHHhcCCCCeEEEEeCCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCccccc-c-
Confidence                                       8999999999999999999988753  3334434588888876  99974 2 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh---------------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA---------------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~---------------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~  219 (339)
                       .||+++++++++.++++.+++.                     ++..++++.+++++.+++.++...++++++++++.+
T Consensus       187 -~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~  265 (375)
T PRK11706        187 -EGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYD  265 (375)
T ss_pred             -CCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3677777777888887776531                     123356778888889999999999999999999999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecccccc----
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----  295 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~----  295 (339)
                      .|.+++....+..|..+...         ....+++++.+.+.....++.+.|+..||.++.+. ..+..+|....    
T Consensus       266 ~L~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~-~p~~~~~~~~~~~~~  335 (375)
T PRK11706        266 ALAPLAEAGRIELPSIPDDC---------KHNAHMFYIKLRDLEDRSALINFLKEAGIMAVFHY-IPLHSSPAGERFGRF  335 (375)
T ss_pred             HhcCCCcCCeeecCCCCCCC---------ceeeEEEEEEECCcCCHHHHHHHHHHCCCCccccC-CccCcchhhHhcCCC
Confidence            99887632122333221110         11345777777544456788888888898877543 23322332111    


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.++|....    +..+.|-+-+...-.++.++.+.+++++
T Consensus       336 ~~~~p~a~~----~~~~~l~lP~~~~l~~~~~~~i~~~i~~  372 (375)
T PRK11706        336 HGEDRYTTK----ESERLLRLPLFYNLTDVEQRTVIDTILE  372 (375)
T ss_pred             CCCChHHHH----HHhCcEeccCCCCCCHHHHHHHHHHHHH
Confidence            112332211    2345566655544445556666666654

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.87  E-value=2.7e-20  Score=175.50  Aligned_cols=235  Identities=17%  Similarity=0.218  Sum_probs=154.5

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHH-HHHhcCCCCEEEEc---CCCccchHHH----------------H
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAA-VTHLLGTGEEIVAG---DDLYGGTDRL----------------L  110 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~---~~~y~~~~~~----------------~  110 (339)
                      ..+.+++||+++|+++|.  +++++++||++||.. +.++++|||+|+++   .+.|......                +
T Consensus        52 ~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~~~l~~l  131 (346)
T TIGR03576        52 PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFESDELSEL  131 (346)
T ss_pred             CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEeccCCHHHH
Confidence            457899999999999998  899999999999986 45589999999864   2333221100                1


Q ss_pred             H-------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cCc--ccCCCeEEEeccccccccCCC
Q 019543          111 S-------------------------RKIAEMAHAHGALLLVDNSIMSPVL---SRP--LELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       111 ~-------------------------~~I~~la~~~g~~livD~a~a~g~~---~~~--~~~~~Di~~~S~sK~l~g~~~  160 (339)
                      .                         ++|+++|++||++|++||+|+.++.   +.+  ...+.|++++||||+++|   
T Consensus       132 ~~~~~~~lIiitg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG---  208 (346)
T TIGR03576       132 KKIDGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDG---  208 (346)
T ss_pred             hhCcCceEEEEECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccc---
Confidence            0                         6889999999999999999998753   221  234579999999998864   


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                      .++|++++++ ++++.+++..+.+..++++..++.+..+|+..  +.+.+..+++.+.+.+.++..   . + +|.    
T Consensus       209 ~r~G~v~~~~-~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~---~-~-~~~----  278 (346)
T TIGR03576       209 PRGGLLAGRK-ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL---N-V-ERT----  278 (346)
T ss_pred             cceEEEEeCH-HHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC---C-C-CcC----
Confidence            4689999875 78888888776555445666666666666543  334455556666666666532   1 1 221    


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                                  .++.+.+.+.+.+......+.|+..|+.+..|..+     +                + .++.+|||+
T Consensus       279 ------------~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f-----~----------------~-~~~~vRis~  324 (346)
T TIGR03576       279 ------------PTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGM-----P----------------G-ASKTLRFDL  324 (346)
T ss_pred             ------------CCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCccc-----C----------------C-CCCeEEEEE
Confidence                        23455566643211122334456678877754321     1                0 246899999


Q ss_pred             ccCC-----HHHHHHHHHHHH
Q 019543          319 GIED-----VNDLISDLDKAL  334 (339)
Q Consensus       319 g~e~-----~~~li~~l~~al  334 (339)
                      +.++     .+.+++.|.+.|
T Consensus       325 ~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       325 AAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             ecChHHhcCHHHHHHHHHhcc
Confidence            9876     455555554443

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PLN02822 serine palmitoyltransferase

Probab=99.87  E-value=1.8e-20  Score=183.82  Aligned_cols=244  Identities=15%  Similarity=0.168  Sum_probs=170.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH----------------------H
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR----------------------L  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~----------------------~  109 (339)
                      .++.+.+||++|+++++.++++++++|.+++.++ .+++++||.|+++...+.....                      .
T Consensus       152 ~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~  231 (481)
T PLN02822        152 TIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNT  231 (481)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence            3466899999999999999999999998888754 4589999999987653322110                      0


Q ss_pred             H-------------H------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-------cc---CCCeEEE
Q 019543          110 L-------------S------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-------LE---LGADIVM  148 (339)
Q Consensus       110 ~-------------~------------------~~I~~la~~~g~~livD~a~a~g~~~~~-------~~---~~~Di~~  148 (339)
                      +             +                  ++|+++|++||+++|+||+|+.|++++.       ..   ...||++
T Consensus       232 l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~  311 (481)
T PLN02822        232 LEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIIT  311 (481)
T ss_pred             HHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEE
Confidence            0             0                  8999999999999999999998775421       11   2468999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +||+|+++.    .||++++++ ++++.++....  .+++.++|..++.++..|+.+   +..+++.+++.+++.+.|++
T Consensus       312 ~s~sKalg~----~GG~i~g~~-~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~  386 (481)
T PLN02822        312 AAMGHALAT----EGGFCTGSA-RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD  386 (481)
T ss_pred             ecchhhhhh----CCeEEEcCH-HHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence            999999983    468998764 67777664322  345666777665555555443   45778888999999999987


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--------HHHHHHHccCC-cceeecccCCcccceeccccc
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTK-YFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--------~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+++.. ..                .+.++++++.+++.        ....+|++.|. +.|+.+..+..      |.. 
T Consensus       387 ~~g~~~-~~----------------~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~------~~~-  442 (481)
T PLN02822        387 IPGLSI-GS----------------NTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKR------STL-  442 (481)
T ss_pred             cCCccc-CC----------------CCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCC------CCc-
Confidence            655432 11                12578888888531        22467888874 77887764321      111 


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        ..         +-.+..+|+++...++++.|+.+.++|++
T Consensus       443 --~~---------~~~~~~lRi~is~~~t~edI~~~~~~l~~  473 (481)
T PLN02822        443 --DK---------CRLPVGIRLFVSAGHTESDILKASESLKR  473 (481)
T ss_pred             --CC---------CCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence              00         00234699999998888888888777764

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.87  E-value=4.6e-21  Score=174.74  Aligned_cols=238  Identities=21%  Similarity=0.247  Sum_probs=174.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHh--cCCCCEEEEcCCCccchH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHL--LGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~l--l~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      .+..+.+||++||++.+.+.+++|+|++-||.+ +..|  .-||-+|+. |...++..                      
T Consensus       214 ~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~S-D~gNHASMI~GIrns~v~K~IFrHND~~hL  292 (570)
T KOG1360|consen  214 HSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFS-DEGNHASMIQGIRNSRVPKHIFRHNDLDHL  292 (570)
T ss_pred             CCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEec-cccchHHHHHHhhhcCCcceeeccCCHHHH
Confidence            446688999999999999999999999999975 3334  347887765 44333221                      


Q ss_pred             -HHHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------cccCCCeEEEeccc
Q 019543          108 -RLLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSAT  152 (339)
Q Consensus       108 -~~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~~~~~Di~~~S~s  152 (339)
                       .+++                         ++|+++|+|||++.++||+|+.|.++.         .+-...||+.+++.
T Consensus       293 ~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLg  372 (570)
T KOG1360|consen  293 EQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLG  372 (570)
T ss_pred             HHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchh
Confidence             1111                         999999999999999999999887642         12235699999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---H--HHHHHHHHHHHHHHHHHHhCCC
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---M--ALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~--~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      |+||    .+||+|+... .+++.+|.+..  ++++.++|....-++.+++.   .  ...++++++|.+++++.|.+..
T Consensus       373 KafG----cVGGYIAat~-~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~G  447 (570)
T KOG1360|consen  373 KAFG----CVGGYIAATR-KLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELG  447 (570)
T ss_pred             hhcc----cccceehhhh-hHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            9998    6799998875 79999998765  57889999765544444332   2  3445667788999999988753


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                            .|-++             ..++|+++.+++...+.+.++.| ..++|.|-      -+.+|.+.          
T Consensus       448 ------iPVi~-------------~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQ------aINyPTV~----------  492 (570)
T KOG1360|consen  448 ------IPVIP-------------NPSHIIPVRVGDAALAKQASDILISKHNIYVQ------AINYPTVA----------  492 (570)
T ss_pred             ------CcccC-------------CCcceeeeeccCHHHHHHHHHHHHHhcCeEEE------eccCCccc----------
Confidence                  23221             24789999999998888888876 34444433      24455431          


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                          ....++||..+..|+++..++|.++|.
T Consensus       493 ----rG~E~LRiaPTP~HT~~mm~~lv~~l~  519 (570)
T KOG1360|consen  493 ----RGTERLRIAPTPHHTPQMMNILVNALL  519 (570)
T ss_pred             ----ccceeeecCCCCCCCHHHHHHHHHHHH
Confidence                245789999999999888888888775

>PRK07179 hypothetical protein; Provisional

Probab=99.87  E-value=4.6e-20  Score=177.98  Aligned_cols=238  Identities=18%  Similarity=0.187  Sum_probs=163.9

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHH----------------------H
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRL----------------------L  110 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~----------------------~  110 (339)
                      .+...+||++||+++|.+++++++||++|+.+++ .+.++||+|+++...+......                      +
T Consensus        98 ~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l  177 (407)
T PRK07179         98 DSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQI  177 (407)
T ss_pred             chHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecCCCHHHHHHHH
Confidence            3678999999999999999999999999998654 5788999999887654333211                      1


Q ss_pred             H----------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-------ccc--CCCeEEEeccccccccCC
Q 019543          111 S----------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-------PLE--LGADIVMHSATKFIAGHS  159 (339)
Q Consensus       111 ~----------------------~~I~~la~~~g~~livD~a~a~g~~~~-------~~~--~~~Di~~~S~sK~l~g~~  159 (339)
                      +                      ++|.++|++||+++|+|++|+.|..+.       ...  .++|++++|++|++++  
T Consensus       178 ~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~--  255 (407)
T PRK07179        178 ERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG--  255 (407)
T ss_pred             HhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc--
Confidence            1                      999999999999999999998765321       111  2469999999999984  


Q ss_pred             CceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCC
Q 019543          160 DVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRG---VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  234 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~---l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~  234 (339)
                        .+|++++++ ++++.+.....  .++.++++...+.+...   ++..+.++++..++.+++.+.|+++ ++. +    
T Consensus       256 --~~G~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~-v----  326 (407)
T PRK07179        256 --RAGIITCPR-ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL-GYN-I----  326 (407)
T ss_pred             --cCeEEEeCH-HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC-C----
Confidence              268888764 66666654332  24455555443333233   3334556777888889999999875 321 1    


Q ss_pred             CCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          235 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                                    .+.+++++|.+++...+..+.+.|.+.|+.++      .+..|..      +        ..++.|
T Consensus       327 --------------~~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~------~~~~p~~------~--------~~~~~l  372 (407)
T PRK07179        327 --------------RSESQIIALETGSERNTEVLRDALEERNVFGA------VFCAPAT------P--------KNRNLI  372 (407)
T ss_pred             --------------CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEe------eecCCCC------C--------CCCceE
Confidence                          12467899988765556677777877777532      1222321      0        134789


Q ss_pred             EEEeccCCHHHHHHHHHHHHhc
Q 019543          315 RISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~  336 (339)
                      |||++..++++.++.+.++|++
T Consensus       373 Ris~~~~~t~edi~~~~~~l~~  394 (407)
T PRK07179        373 RLSLNADLTASDLDRVLEVCRE  394 (407)
T ss_pred             EEEECCCCCHHHHHHHHHHHHH
Confidence            9999987777777777776653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.86  E-value=1e-19  Score=173.96  Aligned_cols=264  Identities=17%  Similarity=0.199  Sum_probs=180.1

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+|.+.+||+++|+++|.++++.++||++|+.+++ ++ ++|||+|+++++.|.++...+.                   
T Consensus        31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d  110 (379)
T PRK11658         31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVT  110 (379)
T ss_pred             CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence            47889999999999999999999999999998654 46 7899999999998877654332                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc-cCCCeEEEeccccccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL-ELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~-~~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                 ++|.++|++||++||+|++|+.|....  .. ..+.++..++.+|.+.+   .
T Consensus       111 ~~~l~~~i~~~tkav~~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~---g  187 (379)
T PRK11658        111 PEAIEAAITPRTKAIIPVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITC---A  187 (379)
T ss_pred             HHHHHHhcccCCeEEEEeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcc---c
Confidence                                       999999999999999999999875433  22 24545555555688864   3


Q ss_pred             eEEEEEEcChhHHHHHHHHHHh------------------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 019543          162 MAGVLAVKGERLAKELYFLQNA------------------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  217 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~------------------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l  217 (339)
                      .||+++++++++.++++.++..                        +...|+.+.|++++.+++.+++..++++++++++
T Consensus       188 ~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~  267 (379)
T PRK11658        188 EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARY  267 (379)
T ss_pred             CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899998877888888765421                        1134667788889999999999999999999999


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---HHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+.|++++.+ .+..|..+.           .....+++|.+...   ....++.+.|+..||.++... ..+..+|...
T Consensus       268 ~~~L~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~-~~~~~~~~~~  334 (379)
T PRK11658        268 LQALADLPFQ-PLSLPAWPH-----------QHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHF-RAAHTQKYYR  334 (379)
T ss_pred             HHHhcCCCCc-cCcCCCCCC-----------ceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccC-cCcccChhhh
Confidence            9999987642 222221100           01124666666421   235678888888888765332 1222233211


Q ss_pred             c---CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 S---HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~---h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .   ...+|...    .+....|.+-+...-+++.++.+.+++++
T Consensus       335 ~~~~~~~~p~~~----~~~~~~l~lP~~~~l~~~~~~~i~~~i~~  375 (379)
T PRK11658        335 ERFPTLSLPNTE----WNSERICSLPLFPDMTDADVDRVITALQQ  375 (379)
T ss_pred             ccCCCCCChHHH----HHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence            0   11222211    12345666666655556667777777765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.86  E-value=4.5e-20  Score=178.02  Aligned_cols=239  Identities=22%  Similarity=0.230  Sum_probs=164.3

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC--CCCEEEEcCCCccchHH----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG--TGEEIVAGDDLYGGTDR----------------------  108 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~--~GD~Vi~~~~~y~~~~~----------------------  108 (339)
                      ++.+++||++|++++|.+.+++|+||++|+..++. +.+  +||.|++++..++.+..                      
T Consensus        89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~~d~~~l~~  168 (406)
T PRK13393         89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADLER  168 (406)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCCCCHHHHHH
Confidence            45789999999999999999999999999986554 544  78887776543322111                      


Q ss_pred             HHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEeccccc
Q 019543          109 LLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATKF  154 (339)
Q Consensus       109 ~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK~  154 (339)
                      .++                         ++|.++|++||+++++|++|+.|++++   .      .....||+++||||+
T Consensus       169 ~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa  248 (406)
T PRK13393        169 KLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKA  248 (406)
T ss_pred             HHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchh
Confidence            110                         999999999999999999998776432   1      112258999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      ++.    .||+++++ +++.+.++.....  ++.+.+|..++.+...|+.+   ..+.++.+++.+++.+.|++. ++. 
T Consensus       249 ~g~----~GG~~~~~-~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-  321 (406)
T PRK13393        249 FGV----MGGYITGS-AALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-GIP-  321 (406)
T ss_pred             hcc----cCceeeCC-HHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-CCC-
Confidence            984    36888765 4677777665432  45667776555555555443   233455567888899988764 221 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                          ..             ++.++++++.+++...+.++.+.|.+ .|+.++.+.      +|..      +        
T Consensus       322 ----~~-------------~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~------~p~~------p--------  364 (406)
T PRK13393        322 ----HL-------------PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPIN------YPTV------P--------  364 (406)
T ss_pred             ----cC-------------CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeEC------CCCC------C--------
Confidence                11             22567888888765566788888865 588776432      2321      1        


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...+.||||+.+.++++.++.+.++|++
T Consensus       365 ~g~~~iRis~~~~~t~edid~l~~~l~~  392 (406)
T PRK13393        365 RGTERLRITPSPLHTDADIEHLVQALSE  392 (406)
T ss_pred             CCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            1236799999988877777777777654

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.86  E-value=4.3e-20  Score=178.37  Aligned_cols=238  Identities=19%  Similarity=0.160  Sum_probs=163.3

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchHH----------------------H
Q 019543           55 PTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTDR----------------------L  109 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~~----------------------~  109 (339)
                      +.+.+||+++|+++|.+++++|+||++|+..++. +.  .+||.|+++...+..+..                      .
T Consensus        91 ~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~  170 (410)
T PRK13392         91 HPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQ  170 (410)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCCCHHHHHHH
Confidence            4689999999999999999999999988875443 43  489998887543322211                      1


Q ss_pred             HH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEecccccc
Q 019543          110 LS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATKFI  155 (339)
Q Consensus       110 ~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK~l  155 (339)
                      ++                         ++|.++|++||+++|+|++|+.|.++.   .      .....|++++|+||++
T Consensus       171 l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~  250 (410)
T PRK13392        171 LASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF  250 (410)
T ss_pred             HHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhh
Confidence            10                         999999999999999999998766431   1      1124589999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      ++.    ||+++++ +++++.++....  .++..++|..++.+...|+.   ...+.+++.++.+++.+.|++. ++.. 
T Consensus       251 g~~----GG~~~~~-~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-  323 (410)
T PRK13392        251 GCL----GGYIAAS-ADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-GIPV-  323 (410)
T ss_pred             hcc----cchhhcC-HHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-
Confidence            853    5888775 478887776553  24566676655544444443   3445566778888899988875 3321 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                       +|                +.++++++.+++...+.++.+.|. ..|+.++.+.      .|..      +        -
T Consensus       324 -~~----------------~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~------~p~~------~--------~  366 (410)
T PRK13392        324 -MP----------------SPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPIN------YPTV------P--------R  366 (410)
T ss_pred             -CC----------------CCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeC------CCCC------C--------C
Confidence             11                246778787776555678888874 5688876432      2211      0        1


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ....||||+.+.++++.++.+.++|++
T Consensus       367 ~~~~lRis~~~~~t~edid~l~~aL~~  393 (410)
T PRK13392        367 GTERLRITPTPLHDDEDIDALVAALVA  393 (410)
T ss_pred             CCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            236899999887777777777776653

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.86  E-value=9.1e-20  Score=175.65  Aligned_cols=240  Identities=22%  Similarity=0.237  Sum_probs=163.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC--CCCEEEEcCCCccchH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG--TGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~--~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      .++.+.+||+++++++|.+++++++||++|+..++. +.+  +||.|+++...+..+.                      
T Consensus        88 ~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~  167 (402)
T TIGR01821        88 TNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLE  167 (402)
T ss_pred             CcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECCCCHHHHH
Confidence            357899999999999999999999999999875544 443  7888877643221111                      


Q ss_pred             HHHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEecccc
Q 019543          108 RLLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATK  153 (339)
Q Consensus       108 ~~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK  153 (339)
                      .++.                         ++|.++|++||+++|+|++|+.|.++.   .      +....|++++||||
T Consensus       168 ~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sK  247 (402)
T TIGR01821       168 KLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAK  247 (402)
T ss_pred             HHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechh
Confidence            1110                         999999999999999999998765432   1      11235899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ++++.    ||++++++ ++++.++....  .+++..+|..++.++..|+.+   +.+.++..++.+++.+.|+++ ++.
T Consensus       248 a~g~~----GG~i~~~~-~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  321 (402)
T TIGR01821       248 AFGVV----GGYIAASR-KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-GIP  321 (402)
T ss_pred             hhccC----CceeecCH-HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            99853    57887764 67777765433  245667777666655555543   334555567888899988875 221


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                           ..             .+.+++++|.+++...+.++.+.|. ..|+.++..      .+|.+      +       
T Consensus       322 -----~~-------------~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~------~~p~~------~-------  364 (402)
T TIGR01821       322 -----VI-------------PNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPI------NYPTV------P-------  364 (402)
T ss_pred             -----cC-------------CCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeE------CCCCC------C-------
Confidence                 11             1246788888876556677888874 457776632      12321      0       


Q ss_pred             CCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          308 GLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       308 g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       .....||||+.+.++++.++.+.++|++
T Consensus       365 -~g~~~lRis~~~~~t~edi~~~~~~l~~  392 (402)
T TIGR01821       365 -RGTERLRITPTPAHTDKMIDDLVEALLL  392 (402)
T ss_pred             -CCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence             1236799999888777777777777654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.85  E-value=1.2e-19  Score=174.97  Aligned_cols=240  Identities=21%  Similarity=0.204  Sum_probs=164.7

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC--CCCEEEEcCCCccchH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG--TGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~--~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      .++.+.+||++||+++|.+.+++++||+.|+..++. +.+  +++.|+.+...+....                      
T Consensus        89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~~d~~~le  168 (407)
T PRK09064         89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHLE  168 (407)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence            357899999999999999999999999999875444 443  7888777654322111                      


Q ss_pred             HHHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEecccc
Q 019543          108 RLLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATK  153 (339)
Q Consensus       108 ~~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK  153 (339)
                      .+++                         ++|.++|++||++||+||+|+.|.+++   .      +....|++++||||
T Consensus       169 ~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sK  248 (407)
T PRK09064        169 ELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAK  248 (407)
T ss_pred             HHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecch
Confidence            1111                         899999999999999999998665431   1      11235899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ++|.    .||++++++ ++++.++....  .+++..+|..++.++..++.+   ...+++..++.+++.+.|++. ++.
T Consensus       249 a~g~----~GG~~~~~~-~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  322 (407)
T PRK09064        249 AFGV----MGGYIAGSA-ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-GIP  322 (407)
T ss_pred             hhhc----cCceEecCH-HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            9984    358888764 67777765433  235567776666565566554   333566778888999998875 222


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                           ..             .+.+++++|.+++...+.++.+.|. ..|+.++..      .+|..      +       
T Consensus       323 -----~~-------------~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~------~~p~~------~-------  365 (407)
T PRK09064        323 -----VM-------------PNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPI------NYPTV------P-------  365 (407)
T ss_pred             -----CC-------------CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeE------CCCCC------C-------
Confidence                 11             1246788888876556677888774 458877632      12211      1       


Q ss_pred             CCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          308 GLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       308 g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       ...+.||||+++.++++.++.+.++|++
T Consensus       366 -~~~~~lRis~~~~~t~edi~~l~~~l~~  393 (407)
T PRK09064        366 -RGTERLRITPTPFHTDEMIDHLVEALVE  393 (407)
T ss_pred             -CCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence             1236799999998888877777777764

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.85  E-value=2.3e-19  Score=172.16  Aligned_cols=242  Identities=17%  Similarity=0.193  Sum_probs=158.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+.++++++.+++++|.++.+++++|++|+..++ .+++|||+|+++++.|+.....+.                    
T Consensus        85 ~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  164 (397)
T PRK06939         85 TQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQ  164 (397)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCCHHHHHHH
Confidence            34678999999999999888999999988887544 588999999999987765421111                    


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-----ccCCCeEEEecccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-----LELGADIVMHSATK  153 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~-----~~~~~Di~~~S~sK  153 (339)
                                                   ++|.++|++||++||+|++|+.+....    .     +..+.|++++|+||
T Consensus       165 i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK  244 (397)
T PRK06939        165 LKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGK  244 (397)
T ss_pred             HHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHH
Confidence                                         899999999999999999997654321    1     11246899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      +++|+   .+|++++++ ++++.++....  .++...++..++.+...++.+   ....++..++.+++.+.|+.+. ++
T Consensus       245 ~~~g~---r~G~v~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~  319 (397)
T PRK06939        245 ALGGA---SGGYTAGRK-EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAG-FT  319 (397)
T ss_pred             HhCcc---CceEEEeCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence            99642   478998874 67777765422  123333444333333333332   3556667788888888887652 21


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                      .  .+                +.++++++.+++.....+|++.|...|+.+. +..     .|..      +        
T Consensus       320 ~--~~----------------~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~-~~~-----~~~~------~--------  361 (397)
T PRK06939        320 L--GP----------------GEHPIIPVMLGDAKLAQEFADRLLEEGVYVI-GFS-----FPVV------P--------  361 (397)
T ss_pred             c--CC----------------CCCCEEEEEECCHHHHHHHHHHHHHCCceEe-eeC-----CCCC------C--------
Confidence            1  11                1345666666554456778888877688776 321     1110      0        


Q ss_pred             CCCCeEEEEeccCC----HHHHHHHHHHHHhcC
Q 019543          309 LTEDLVRISVGIED----VNDLISDLDKALRTG  337 (339)
Q Consensus       309 ~~~~~lRisvg~e~----~~~li~~l~~al~~~  337 (339)
                      -..+.||++++..+    .++.++.|.++++++
T Consensus       362 ~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        362 KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             CCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence            02367999987643    444455555555544

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.85  E-value=3e-19  Score=168.32  Aligned_cols=243  Identities=21%  Similarity=0.209  Sum_probs=166.0

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      +.++..+++++.+++++|+++++++++|++++.+ +.++++|||+|+++++.|......+.                   
T Consensus        43 ~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~  122 (349)
T cd06454          43 GTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEK  122 (349)
T ss_pred             CCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHH
Confidence            4578899999999999999989999999999875 44578999999998876654331111                   


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------cccCCCeEEEecccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATK  153 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~~~~~Di~~~S~sK  153 (339)
                                                   ++|+++|++||+++|+|++|+.|....         ....+.|++++|+||
T Consensus       123 ~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK  202 (349)
T cd06454         123 LLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGK  202 (349)
T ss_pred             HHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechh
Confidence                                         899999999999999999998664321         123467999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ++++    .||+++.++ ++.+.++.....  .+..+++...+.+...++.+   ..+.++..++.+++.+.|+++ ++.
T Consensus       203 ~~~~----~gG~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~  276 (349)
T cd06454         203 AFGA----VGGYIAGSK-ELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-GFP  276 (349)
T ss_pred             hhcc----cCCEEECCH-HHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence            9985    357887764 666666554332  23456665544444444443   445667778888888888765 322


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                      .  ++               ...+.++++.+.+.....++.+.|...|+.++.+...+   .+                 
T Consensus       277 ~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~---~~-----------------  319 (349)
T cd06454         277 V--GG---------------SPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPT---VP-----------------  319 (349)
T ss_pred             c--cC---------------CCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCc---cC-----------------
Confidence            1  11               01233445544433345678888776687766432100   00                 


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ...+.||++++....++.++++.++|++.
T Consensus       320 ~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         320 RGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             CCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            12478999999888888888898888764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.84  E-value=5.9e-19  Score=166.83  Aligned_cols=239  Identities=20%  Similarity=0.210  Sum_probs=164.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+...++++.++++++.+..+++++|+.++.. +..+++|||+|+++++.|......+.                    
T Consensus        59 ~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  138 (360)
T TIGR00858        59 NSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERL  138 (360)
T ss_pred             CcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHH
Confidence            356788999999999998899999999887764 44578999999998887654331111                    


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C--c------c-cCCCeEEEeccccc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R--P------L-ELGADIVMHSATKF  154 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~-~--~------~-~~~~Di~~~S~sK~  154 (339)
                                                 ++|.++|+++|+++|+|++|+.+.+. .  +      . +.+.+|+++|+||+
T Consensus       139 ~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~  218 (360)
T TIGR00858       139 LEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKA  218 (360)
T ss_pred             HHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhh
Confidence                                       88999999999999999999866432 1  1      1 23568999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      +++.    ||++++++ ++.+.+.....  .++...++...+.+...++   ..+.+.++..++.+++.+.|++++ ++ 
T Consensus       219 ~~~~----gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-  291 (360)
T TIGR00858       219 LGSY----GAYVAGSQ-ALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG-FT-  291 (360)
T ss_pred             hhcc----CcEEEcCH-HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-Cc-
Confidence            9853    47888764 67776654322  1234455554433333333   234556777788889999998753 32 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      + +|                ..++++++.+++.....+|.+.|...|+.++.+.....   +                 -
T Consensus       292 ~-~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~---~-----------------~  334 (360)
T TIGR00858       292 L-MP----------------SCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTV---P-----------------A  334 (360)
T ss_pred             c-CC----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCC---C-----------------C
Confidence            1 11                14668888886554566888888777888765322100   0                 0


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ..+.+|+|++..+.++.++.+.++|+
T Consensus       335 ~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       335 GTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             CCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            23579999999887887777777764

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.84  E-value=8.6e-19  Score=167.39  Aligned_cols=241  Identities=22%  Similarity=0.218  Sum_probs=166.7

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      +..+..++++++++++++.+..+++++|+.++..+ ..+++|||+|+++++.|+.....+.                   
T Consensus        81 g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~  160 (385)
T PRK05958         81 GNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEA  160 (385)
T ss_pred             CCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCCCCHHHHHH
Confidence            34577899999999999988899999998887654 4578999999999887765432111                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------ccc-CCCeEEEeccccc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLE-LGADIVMHSATKF  154 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~~-~~~Di~~~S~sK~  154 (339)
                                                 ++|.++|++||+++|+|++|+.|....         .+. ...+|++.|+||+
T Consensus       161 ~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~  240 (385)
T PRK05958        161 LLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKA  240 (385)
T ss_pred             HHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhh
Confidence                                       899999999999999999997664321         111 1235889999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      +++.    ||+++++ +++.+.+.....  .++...++..++++...++.+   ..+.++..++.+++.+.|+..+ ++ 
T Consensus       241 ~~~~----Gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~-  313 (385)
T PRK05958        241 LGSS----GAAVLGS-ETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG-FQ-  313 (385)
T ss_pred             cccC----CcEEEcC-HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-CC-
Confidence            9843    4777766 466666543321  223445666555444445433   3456667778888888888652 22 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      + .+                +.+++++|.+++.....+|.+.|.+.|+.++.+..      +..      +        -
T Consensus       314 ~-~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~------~~~------~--------~  356 (385)
T PRK05958        314 L-MD----------------SQSAIQPLIVGDNERALALAAALQEQGFWVGAIRP------PTV------P--------A  356 (385)
T ss_pred             c-CC----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccC------CCC------C--------C
Confidence            1 11                24678899886655567888888877888764221      100      0        0


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .++.+|||++....++.++.+.++|++
T Consensus       357 ~~~~lRis~~~~~~~~~i~~~l~~l~~  383 (385)
T PRK05958        357 GTSRLRITLTAAHTEADIDRLLEALAE  383 (385)
T ss_pred             CCceEEEEecCCCCHHHHHHHHHHHHh
Confidence            236799999988888888888888765

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.83  E-value=6.8e-19  Score=167.78  Aligned_cols=205  Identities=16%  Similarity=0.114  Sum_probs=135.0

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH-------------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD-------------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~-------------------------  107 (339)
                      +|...++++.+|+++|.+.+++++||++|+.+++ +++++||.|+++.+.|...+                         
T Consensus        50 ~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~  129 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDP  129 (370)
T ss_pred             chHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCH
Confidence            3467888889999999999999999999998644 57899999999766432211                         


Q ss_pred             ----HHH---------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccc
Q 019543          108 ----RLL---------S-------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  154 (339)
Q Consensus       108 ----~~~---------~-------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~  154 (339)
                          ..+         .                   ++|.++|++||+++++|++|+.|... .....+.|++++|+||+
T Consensus       130 ~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~  209 (370)
T TIGR02539       130 EGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKS  209 (370)
T ss_pred             HHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCccc
Confidence                111         1                   89999999999999999999987543 33345789999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcC--------CCCChHHHHHHHhchhhHHH---HHHHHHHHHHHHHHHHhC
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEG--------SGLAPFDCWICLRGVKTMAL---RVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~--------~~~~~~~a~~~~~~l~~~~~---r~~~~~~~a~~l~~~L~~  223 (339)
                      +++++  ..|++++++ ++++.++.....+.        .......+..+...++...+   +..+..++++++++.|++
T Consensus       210 ~~~~g--~~G~l~~~~-~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~  286 (370)
T TIGR02539       210 MAASG--PCGVLGMSE-EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELED  286 (370)
T ss_pred             ccCCC--CEEEEEECH-HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98543  257888875 68888776543211        11111112222233433222   233445556789999988


Q ss_pred             CCCceEE-ecCCCCCCCchHhHhhhcCCCcceEEEeeCC--------HHHHHHHHccCCcceee
Q 019543          224 HPRVKKV-NYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LALSKHVVETTKYFSIT  278 (339)
Q Consensus       224 ~~~i~~v-~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--------~~~~~~~~~~L~~~~i~  278 (339)
                      .+ +..+ .+|                +.++++.+.++.        ...+..+.+.|++.||.
T Consensus       287 ~g-~~~~~~~~----------------s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~  333 (370)
T TIGR02539       287 IG-FIQLGQKP----------------KEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIH  333 (370)
T ss_pred             CC-cEEEccCC----------------CcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCc
Confidence            74 4322 112                245677666532        12345688888877773

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.83  E-value=4.9e-19  Score=170.83  Aligned_cols=245  Identities=19%  Similarity=0.172  Sum_probs=163.1

Q ss_pred             CCchHHHHHH----HHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCC-------------------------------CCE
Q 019543           53 GNPTRDALES----LLAKLDKADRALC-FTSGMAALAA-VTHLLGT-------------------------------GEE   95 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~-------------------------------GD~   95 (339)
                      +...++++|.    +..++||++++-+ ..||+.||.+ +.++++|                               ||+
T Consensus        89 g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~  168 (493)
T PRK13580         89 GCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR  168 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE
Confidence            4566666664    4456899998766 4599999986 4558876                               799


Q ss_pred             EEEcCCCccchH---------------------------------HHHH--------------------HHHHHHHHHcC
Q 019543           96 IVAGDDLYGGTD---------------------------------RLLS--------------------RKIAEMAHAHG  122 (339)
Q Consensus        96 Vi~~~~~y~~~~---------------------------------~~~~--------------------~~I~~la~~~g  122 (339)
                      |+.-+...+|..                                 ..+.                    ++|.++|++||
T Consensus       169 i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~g  248 (493)
T PRK13580        169 LLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVG  248 (493)
T ss_pred             EEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcC
Confidence            988754322210                                 0010                    99999999999


Q ss_pred             CEEEEeCCcCCCCCc-Ccc------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-HhcCCCCChHHHH
Q 019543          123 ALLLVDNSIMSPVLS-RPL------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAEGSGLAPFDCW  194 (339)
Q Consensus       123 ~~livD~a~a~g~~~-~~~------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~~~~~~~~~~a~  194 (339)
                      +++++|++|+.|+.+ +..      ..++||+++|++|+|.|+   .||+|++++ ++.+.+...+ .++|+.++|..++
T Consensus       249 A~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP---~GG~I~~~~-~l~~~L~~a~P~i~gg~l~p~iAA  324 (493)
T PRK13580        249 AVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP---RGGLVLAKK-EYADAVDKGCPLVLGGPLPHVMAA  324 (493)
T ss_pred             CEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCC---CeEEEEecH-HHHHHHhhCCCcccCCCccHHHHH
Confidence            999999999998764 111      136899999999999754   479999875 6777774332 2567888886665


Q ss_pred             HHHhchh----hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHH-HHH
Q 019543          195 ICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK-HVV  269 (339)
Q Consensus       195 ~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~-~~~  269 (339)
                      .+....+    ...++.++..+|+++|++.|++.. +..+.  +              .+.++|+++.+++...+. .+.
T Consensus       325 ~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G-~~vv~--g--------------gTdshIV~V~lg~~~~~g~~a~  387 (493)
T PRK13580        325 KAVALAEARTPEFQKYAQQVVDNARALAEGFLKRG-ARLVT--G--------------GTDNHLVLIDVTSFGLTGRQAE  387 (493)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcC-CCccC--C--------------CCCCCEEEEEeCCHHHHHHHHH
Confidence            5443222    124578888999999999998763 21111  0              135789999998776544 566


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc--------CCHHHHHHHHHHHHh
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--------EDVNDLISDLDKALR  335 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--------e~~~~li~~l~~al~  335 (339)
                      +.|.+.||.++.      +..|.+..-           ...+..|||++..        ++++.+.+.|.++++
T Consensus       388 ~~L~e~GI~vn~------i~~Ptvp~g-----------~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~  444 (493)
T PRK13580        388 SALLDAGIVTNR------NSIPSDPNG-----------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS  444 (493)
T ss_pred             HHHHHCCeEEcc------ccCCCCCCC-----------CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence            678888887662      334543100           0125679999876        445555555555554

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.83  E-value=1.3e-18  Score=166.43  Aligned_cols=239  Identities=18%  Similarity=0.163  Sum_probs=161.0

Q ss_pred             CCcccCCCCchHHHHHHHHHhHhC----CCe-EEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------
Q 019543           46 PYDYTRSGNPTRDALESLLAKLDK----ADR-ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~g----~~~-~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      .|..+++.-.+++++.+.+.+.+|    .++ +++++++++|+.. +++++.|||+|++++|.|.....++.        
T Consensus        60 ~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~  139 (393)
T COG0436          60 HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVP  139 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEE
Confidence            344444444556666666666666    233 7788888999985 66799999999999998865543222        


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cc
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~  140 (339)
                                                                    ++|+++|++||++||.|++|..-.+..     .+
T Consensus       140 v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~  219 (393)
T COG0436         140 VPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSIL  219 (393)
T ss_pred             EeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHh
Confidence                                                          999999999999999999996544321     11


Q ss_pred             cC----CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh------hHHHHHHHH
Q 019543          141 EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQ  210 (339)
Q Consensus       141 ~~----~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~------~~~~r~~~~  210 (339)
                      ..    ..-|+++||||.++.+|++ .||++++++++++.+...+.....+.+.....++..+|+      ......++.
T Consensus       220 ~~~~~~~~~i~i~s~SK~~~mtGwR-vG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~  298 (393)
T COG0436         220 ELAGARDRTITINSFSKTYGMTGWR-IGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEY  298 (393)
T ss_pred             hcCCCcceEEEEecccccccccccc-eeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            11    1248889999999998876 567777756788888766665555555544433333332      334444667


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceE-EEeeCCHHHHHHHHccC-CcceeecccCCcccce
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL-SFLTGSLALSKHVVETT-KYFSITVSFGSVKSLI  288 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~iv-s~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~  288 (339)
                      .++.+.+.+.|++.++++.+..|                 .|+.+ ++.+....+..+|+..| ++.|++|..|..+.. 
T Consensus       299 ~~rrd~l~~~l~~~~g~~~~~~p-----------------~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~-  360 (393)
T COG0436         299 RERRDLLVEALNEIGGLSVVKPP-----------------EGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGE-  360 (393)
T ss_pred             HHHHHHHHHHHHhcCCeeeccCC-----------------CeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCC-
Confidence            88899999999998877654444                 23343 44454434456777765 566888887754321 


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCC
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIED  322 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~  322 (339)
                        +                 ..++.+|||+....
T Consensus       361 --~-----------------~g~~~vRis~~~~~  375 (393)
T COG0436         361 --P-----------------PGEGYVRLSLATSE  375 (393)
T ss_pred             --C-----------------CCCCeEEEEEecCH
Confidence              0                 14588999998765

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.83  E-value=1.4e-18  Score=166.21  Aligned_cols=245  Identities=20%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      |.+.++..+.++++++++++++|.+.+++++||++|+.. +..+++|||+|+++++.|+.....+.              
T Consensus        70 ~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~  149 (385)
T TIGR01825        70 VRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADM  149 (385)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeCCCCH
Confidence            334445567899999999999998889999999888874 44588999999999887765432111              


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------cccCCCeEEEe
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMH  149 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~~~~~Di~~~  149 (339)
                                                       ++|.++|++||+++|+|++|+.+....         ....+.|+++.
T Consensus       150 ~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  229 (385)
T TIGR01825       150 DDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVG  229 (385)
T ss_pred             HHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEE
Confidence                                             889999999999999999998764421         12235689999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      ||||++++.    ||++++++ ++.+.+.....  .+++..++...+.+..+++.+   ....++..++.+++.+.|++.
T Consensus       230 s~sK~~~~~----gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       230 TLSKAIGVV----GGYAAGHK-ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             eccHHhhcC----CCEEecCH-HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            999999843    57887664 67777765432  223444554433333334332   234555667788888888764


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                       +++.  ++                ..++++++.++......+|++.|...|+.++.+.      .|..      +    
T Consensus       305 -g~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~------~~~~------~----  349 (385)
T TIGR01825       305 -GYDT--GG----------------SETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIV------FPTV------P----  349 (385)
T ss_pred             -CCCC--CC----------------CCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccC------CCCC------C----
Confidence             3321  11                1345777776654455678888766688765222      1110      0    


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                          .....||+++.+...++.++.+.++++
T Consensus       350 ----~~~~~iRi~~~~~~~~e~i~~~~~~l~  376 (385)
T TIGR01825       350 ----RGTARIRNIPTAEHTKDDLDQALDAYE  376 (385)
T ss_pred             ----CCCceEEEEEcCCCCHHHHHHHHHHHH
Confidence                133679999876666655555555554

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02721 threonine aldolase

Probab=99.83  E-value=1.2e-18  Score=164.68  Aligned_cols=237  Identities=17%  Similarity=0.162  Sum_probs=160.5

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcC-CCCEEEEcCCCccchHH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLG-TGEEIVAGDDLYGGTDR----------------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~-~GD~Vi~~~~~y~~~~~----------------------  108 (339)
                      .+|...+||+.+++++|.+.++++++|++++.. +..+++ +||+|+++++.|.....                      
T Consensus        38 ~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  117 (353)
T PLN02721         38 YDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGT  117 (353)
T ss_pred             CCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCC
Confidence            467789999999999999989999999888764 444566 99999999887532110                      


Q ss_pred             --------HH---------H-----------------------HHHHHHHHHcCCEEEEeCCcCCCCC---c-Cc--ccC
Q 019543          109 --------LL---------S-----------------------RKIAEMAHAHGALLLVDNSIMSPVL---S-RP--LEL  142 (339)
Q Consensus       109 --------~~---------~-----------------------~~I~~la~~~g~~livD~a~a~g~~---~-~~--~~~  142 (339)
                              .+         +                       ++|.++|++||+++++|++|..+..   . .+  ...
T Consensus       118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~  197 (353)
T PLN02721        118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVK  197 (353)
T ss_pred             cCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhh
Confidence                    00         0                       6899999999999999999864421   1 11  123


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh--HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICLRGVKTMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~--~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~  220 (339)
                      ++|.++.|+||+++++   .||+++.+ +++++.+...+..++..+..  ..++.+..+++...+++++..++.+++.+.
T Consensus       198 ~~d~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  273 (353)
T PLN02721        198 AADSVSVCLSKGLGAP---VGSVIVGS-KSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAEG  273 (353)
T ss_pred             hCCEEEEecccccCCc---eeeEEecC-HHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999853   45555554 57777777666544433332  233334445666555666667788899999


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceeccccccCCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      |++++++.....+                ..++++++.+...  .....+++.|...|+.+..+                
T Consensus       274 L~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~----------------  321 (353)
T PLN02721        274 LNQIKGLRVNVAA----------------VETNIVYFDITDGSRITAEKLCKSLEEHGVLLMPG----------------  321 (353)
T ss_pred             HHhCCCcEEecCC----------------ccceEEEEEccCCccccHHHHHHHHHhCCcEEecC----------------
Confidence            9988776421111                1356788877532  23567888887777766532                


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                 ....||++++....++.++.+.++|++
T Consensus       322 -----------~~~~lR~~~~~~~~~~~i~~~~~~l~~  348 (353)
T PLN02721        322 -----------NSSRIRVVTHHQISDSDVQYTLSCFQQ  348 (353)
T ss_pred             -----------CCceEEEEecCcCCHHHHHHHHHHHHH
Confidence                       235799999866666666666666653

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.82  E-value=1.9e-18  Score=165.67  Aligned_cols=213  Identities=19%  Similarity=0.183  Sum_probs=144.6

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH-------------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD-------------------  107 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~-------------------  107 (339)
                      ...+...|.++++|+.+|+++|.+++++++||++|+.+ +.+++++||+|+++.+.|....                   
T Consensus        56 ~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~  135 (387)
T PRK09331         56 RLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP  135 (387)
T ss_pred             ccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc
Confidence            34455678899999999999999999999999999975 4558899999999876433221                   


Q ss_pred             ----------HHH---------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEE
Q 019543          108 ----------RLL---------S-------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVM  148 (339)
Q Consensus       108 ----------~~~---------~-------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~  148 (339)
                                ..+         +                   ++|.++|++||+++++|++|+.|.. .+...+++|+++
T Consensus       136 ~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~  215 (387)
T PRK09331        136 EYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIV  215 (387)
T ss_pred             CCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEE
Confidence                      000         1                   8999999999999999999998864 233456899999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHH--------hcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHH
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--------AEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKI  217 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--------~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l  217 (339)
                      +|++|++++++  .+|++++++ ++++.++...+        .+++.+++..++.+..+++   ....++++..++++++
T Consensus       216 ~s~~K~l~~~~--~~G~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l  292 (387)
T PRK09331        216 GSGHKSMAASA--PSGVLATTE-EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWF  292 (387)
T ss_pred             eeCcccccCCC--CEEEEEECH-HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998653  468888875 66666654321        1333343322222222333   3334566677889999


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--------HHHHHHHccCCcceee
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFSIT  278 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--------~~~~~~~~~L~~~~i~  278 (339)
                      ++.|+++++++.+. +. +             +.++++.|.....        ..+.+|.+.|++.|+.
T Consensus       293 ~~~L~~l~g~~~~~-~~-~-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~  346 (387)
T PRK09331        293 VDELEKIEGFKQLG-EK-P-------------RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIH  346 (387)
T ss_pred             HHHHhcCCCEEEec-cC-c-------------CcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCce
Confidence            99999998876432 11 0             1245666654321        1124577788776664

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.82  E-value=1.2e-18  Score=168.49  Aligned_cols=209  Identities=25%  Similarity=0.259  Sum_probs=141.5

Q ss_pred             CCchHHHHHH----HHHhHhCCCeE-EEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH-------------------
Q 019543           53 GNPTRDALES----LLAKLDKADRA-LCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD-------------------  107 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~~~-l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~-------------------  107 (339)
                      +++.++.+|+    .+++++|.+.+ ++++||++|+.+++ .+++|||+|+++++.|.+..                   
T Consensus        65 ~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  144 (416)
T PRK00011         65 GCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYG  144 (416)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecC
Confidence            3456777777    89999998866 66688999987544 58899999999987664210                   


Q ss_pred             --------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----CcccCCCeEEE
Q 019543          108 --------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVM  148 (339)
Q Consensus       108 --------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~~~~~Di~~  148 (339)
                                    ..+.                    ++|.++|++||+++|+|++|+.|...     ..+. ++|+++
T Consensus       145 ~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~  223 (416)
T PRK00011        145 VDEETGLIDYDEVEKLALEHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVT  223 (416)
T ss_pred             cCcccCCcCHHHHHHHHHhcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEE
Confidence                          0010                    89999999999999999999766431     2334 679999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHh
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      +|++|+++|+   .||+++++++++.++++.....  ++....+..+++....++    .++.+.+++.++++++.+.|+
T Consensus       224 ~S~~K~l~g~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  300 (416)
T PRK00011        224 TTTHKTLRGP---RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALA  300 (416)
T ss_pred             ecCCcCCCCC---CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999643   4788988766777777665432  122222233322222212    346778888999999999998


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHHccCCcceeecccC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~~~L~~~~i~v~~G  282 (339)
                      +. +++..  +.              .+.++++++.+++.. ...++.+.|+..|+.++.+
T Consensus       301 ~~-g~~~~--~~--------------~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~  344 (416)
T PRK00011        301 ER-GFRVV--SG--------------GTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKN  344 (416)
T ss_pred             hC-CCeee--ec--------------CCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccC
Confidence            76 44321  11              113578888875321 3356777777778887643

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.82  E-value=3.7e-19  Score=172.29  Aligned_cols=167  Identities=23%  Similarity=0.336  Sum_probs=133.0

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCC---ccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDL---YGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~---y~~~~~~~~-------------------  111 (339)
                      ++.++.+|+.+++++|++++++|+||++|+.+++..+.+||+||+++..   |++...+..                   
T Consensus       121 g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~  200 (454)
T TIGR00474       121 GSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTH  200 (454)
T ss_pred             chHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCC
Confidence            3567999999999999999999999999998766778999999998864   544432211                   


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCC------------CCCcCcccCCCe
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGAD  145 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~------------g~~~~~~~~~~D  145 (339)
                                                        ++|+++||+||+++++|++.+.            +...++...|+|
T Consensus       201 l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD  280 (454)
T TIGR00474       201 LKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD  280 (454)
T ss_pred             HHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence                                              8899999999999999986332            111244567999


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHH----------------HHHHhcCCCCChHHHHHHHhchhhHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELY----------------FLQNAEGSGLAPFDCWICLRGVKTMALRVEK  209 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~----------------~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~  209 (339)
                      ++++|.+|+++||   .+|++++++ +++++++                .+....+..++|..++..+.+|+++..|+++
T Consensus       281 iv~fSg~K~LgGp---~~G~i~g~~-~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~  356 (454)
T TIGR00474       281 LVTFSGDKLLGGP---QAGIIVGKK-ELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEE  356 (454)
T ss_pred             EEEecCccccCCC---eEEEEEECH-HHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHH
Confidence            9999999999986   489998875 5554422                1122346678888899999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 019543          210 QQDNAQKIAEFLASH  224 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~  224 (339)
                      +++++++++++|++.
T Consensus       357 ~~~~A~~la~~L~~~  371 (454)
T TIGR00474       357 LRARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.81  E-value=5.8e-18  Score=162.40  Aligned_cols=251  Identities=14%  Similarity=0.108  Sum_probs=161.5

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCC----Ce-EEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKA----DR-ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~----~~-~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      |....+..+.++++++.+++++|.    ++ .++++++++++..+ ..+++|||+|++++|.|......++         
T Consensus        61 Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v  140 (389)
T PRK05957         61 YQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILV  140 (389)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEe
Confidence            333334446788999999988874    33 44555557888754 4578999999999998865533222         


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----ccc---
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PLE---  141 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~~---  141 (339)
                                                                ++|+++|++||++||+|++|+...+..     ...   
T Consensus       141 ~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~  220 (389)
T PRK05957        141 PTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPG  220 (389)
T ss_pred             ecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCC
Confidence                                                      889999999999999999987433221     111   


Q ss_pred             -CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHH
Q 019543          142 -LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQK  216 (339)
Q Consensus       142 -~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~  216 (339)
                       ..-.|++.||||.++.+|. +.|++++++ ++++++.......+...+......+...|+    .+.+.+++..++.+.
T Consensus       221 ~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~  298 (389)
T PRK05957        221 SGNHTISLYSLSKAYGFASW-RIGYMVIPI-HLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQI  298 (389)
T ss_pred             ccCcEEEEecchhhccCccc-eeEEEecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence             1124889999999987775 466777764 788888877665554555444444444343    245555666777888


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceecccccc
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMS  295 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~  295 (339)
                      +.+.|+.++++..+.-|                ..+..+++.+.......+|++.|. ..|+.+..|..+.    +    
T Consensus       299 l~~~L~~~~~~~~~~~~----------------~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~----~----  354 (389)
T PRK05957        299 LLKSLGQLQDRCTLHPA----------------NGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFG----M----  354 (389)
T ss_pred             HHHHHHhcCCCccccCC----------------CeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhC----C----
Confidence            88888877653212111                124567777643333567777764 5788888765321    0    


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEeccCCHH---HHHHHHHHHHhc
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGIEDVN---DLISDLDKALRT  336 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~e~~~---~li~~l~~al~~  336 (339)
                                   ..++.+|||++..+.+   +-++.|.+++++
T Consensus       355 -------------~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        355 -------------KNGCYLRIAYGALQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             -------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                         0246899999865544   445555555554

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.81  E-value=7.1e-18  Score=162.37  Aligned_cols=245  Identities=17%  Similarity=0.161  Sum_probs=158.2

Q ss_pred             chHHHHHHHHHhHhCC-C--eEEEcCcHHHHHHHHHH-h----cCCCCEEEEcCCCccchHH----HHH-----------
Q 019543           55 PTRDALESLLAKLDKA-D--RALCFTSGMAALAAVTH-L----LGTGEEIVAGDDLYGGTDR----LLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-~--~~l~~~sG~~A~~~il~-l----l~~GD~Vi~~~~~y~~~~~----~~~-----------  111 (339)
                      ...+++++.+++++|+ +  .+++++|+++++..++. +    ++|||+|+++++.|++...    +.+           
T Consensus        63 ~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  142 (401)
T PRK10874         63 ARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPL  142 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEec
Confidence            4567889999999997 3  35556666888876543 4    4799999999998765421    111           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|+++|+++|+++++|++|+.|... +....++|++++|++|
T Consensus       143 ~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K  222 (401)
T PRK10874        143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHK  222 (401)
T ss_pred             CCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEeccc
Confidence                                                 99999999999999999999876542 2234578999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH---------------------HhcCCCCChHHHHHHHhchhhH-----HHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKTM-----ALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~a~~~~~~l~~~-----~~r~  207 (339)
                      .+|.+|   .|+++.++ ++.+.+....                     ++...+.+......+..+++.+     ....
T Consensus       223 ~~gp~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~  298 (401)
T PRK10874        223 LYGPTG---IGVLYGKS-ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAE  298 (401)
T ss_pred             ccCCCc---cEEEEEch-HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            776433   37888775 5555543211                     0111122222222222233332     2224


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++..+.++++.+.|+++++++.+..|                 .+++++|.+.+.. ..++.+.|...||.++.|...+ 
T Consensus       299 ~~~~~l~~~l~~~l~~~~g~~~~~~~-----------------~~~i~~~~~~~~~-~~~~~~~L~~~gI~v~~g~~~~-  359 (401)
T PRK10874        299 SWSRSLATLAEDALAKLPGFRSFRCQ-----------------DSSLLAFDFAGVH-HSDLVTLLAEYGIALRAGQHCA-  359 (401)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEeCCC-----------------CCcEEEEEECCcC-HHHHHHHHHHCCcEEeccccch-
Confidence            44456678888888888876532211                 3568888875432 3466677777888888664211 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                           .        .....+|. .+.||+|++..++++.++.+.++|++
T Consensus       360 -----~--------~~~~~~g~-~~~iRiS~~~~nt~edid~ll~al~~  394 (401)
T PRK10874        360 -----Q--------PLLAALGV-TGTLRASFAPYNTQSDVDALVNAVDR  394 (401)
T ss_pred             -----H--------HHHHHhCC-CCEEEEEecccCCHHHHHHHHHHHHH
Confidence                 1        11112342 37899999998888888888888864

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.81  E-value=5.7e-18  Score=160.83  Aligned_cols=240  Identities=19%  Similarity=0.177  Sum_probs=154.5

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH-----------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD-----------------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~-----------------------  107 (339)
                      ..+|..+++|+.+++++|.+++++++++++|+.+++ .+++|||+|+++++.|....                       
T Consensus        41 ~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  120 (361)
T cd06452          41 IEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHI  120 (361)
T ss_pred             ccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCccc
Confidence            356889999999999999988998989999987544 57899999999876433221                       


Q ss_pred             ------HHH---------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccc
Q 019543          108 ------RLL---------S-------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSAT  152 (339)
Q Consensus       108 ------~~~---------~-------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~s  152 (339)
                            ..+         +                   ++|.++|+++|+++++|++|+.|.. ......++|++++|+|
T Consensus       121 d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~  200 (361)
T cd06452         121 TPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGH  200 (361)
T ss_pred             CHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCC
Confidence                  001         1                   8999999999999999999987754 3334567899999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHh--------cCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L  221 (339)
                      |++++++  .+|++++++ +++++++..+..        .+....+...+.+..+++.+   ..+..+..++++++.+.|
T Consensus       201 K~l~~~~--~~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L  277 (361)
T cd06452         201 KSMAASA--PIGVLATTE-EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAEL  277 (361)
T ss_pred             ccccCCC--CeEEEEECH-HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998543  477888874 677777554321        12222221222223333332   233444456678999999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--------HHHHHHHccCCcceeecccCCcccceecccc
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      +++++++.+. +. +             +..+++.|.....        ....++.+.|++.||.+.         .+  
T Consensus       278 ~~l~g~~v~~-~~-~-------------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~---------~~--  331 (361)
T cd06452         278 EKIEGIKQLG-EK-P-------------KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGI---------KP--  331 (361)
T ss_pred             hcCCCeEEEC-CC-C-------------CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEE---------cC--
Confidence            9998775332 11 1             1345666654311        112257777766676421         11  


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                    | ....+|+++.- +.++.++.+.++|+.
T Consensus       332 --------------~-~~~~~ri~~~g-~~~e~~~~l~~al~~  358 (361)
T cd06452         332 --------------G-LTRYFKLSTYG-LTWEQVEYVVDAFKE  358 (361)
T ss_pred             --------------C-CceEEEEEecC-CCHHHHHHHHHHHHH
Confidence                          1 23478999921 344555666666654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.81  E-value=7.7e-18  Score=162.38  Aligned_cols=249  Identities=19%  Similarity=0.162  Sum_probs=160.0

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      |...++..++++++.+.+++.+|.     +++++++++++|+..++ .+++|||+|++++|.|++....++         
T Consensus        74 Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v  153 (405)
T PRK06207         74 YTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPV  153 (405)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEE
Confidence            333333445667777777777673     45777777789998654 588999999999998876542221         


Q ss_pred             -----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cc
Q 019543          112 -----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PL  140 (339)
Q Consensus       112 -----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~  140 (339)
                                                                     ++|+++|++||++||+||+|+...+ ..   .+
T Consensus       154 ~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~  233 (405)
T PRK06207        154 QLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHL  233 (405)
T ss_pred             eccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCch
Confidence                                                           8899999999999999999975432 11   11


Q ss_pred             -cC----CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHH
Q 019543          141 -EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQ  211 (339)
Q Consensus       141 -~~----~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~  211 (339)
                       ..    .--|++.||||.++.+| .+.||++++ +++++.+......++...+.+...++...|+    .++.++++..
T Consensus       234 ~~~~~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  311 (405)
T PRK06207        234 RALPIDPENVITIMGPSKTESLSG-YRLGVAFGS-PAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQ  311 (405)
T ss_pred             hcCCCCcCcEEEEecchhhccCcc-cceEEEEcC-HHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence             11    11289999999998666 456788776 4788888777665554445444333333332    2456666677


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCC-cceeecccCCccccee
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLIS  289 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~-~~~i~v~~G~~~s~~~  289 (339)
                      ++.+.+.+.|+.+++++ +..|                ..|..+++.+.+ .....+|++.|. ..|+.+..|..+.   
T Consensus       312 ~~r~~l~~~L~~~~~~~-~~~p----------------~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~---  371 (405)
T PRK06207        312 AIRDDLLRVLRGVEGVF-VRAP----------------QAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFS---  371 (405)
T ss_pred             HHHHHHHHHHhcCCCce-ecCC----------------CeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhC---
Confidence            77788888888776543 1112                134577777753 123466887774 5688887765321   


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEeccCC--HHHHHHHHHHHHh
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALR  335 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~--~~~li~~l~~al~  335 (339)
                       +                 ..++.+|||++.+.  .++-++.|.++++
T Consensus       372 -~-----------------~~~~~~Ris~~~~~~~l~~al~rl~~~l~  401 (405)
T PRK06207        372 -P-----------------HTADSIRLNFSQDHAAAVAAAERIAQLIE  401 (405)
T ss_pred             -C-----------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence             1                 12468999999731  2233444555544

>PRK07324 transaminase; Validated

Probab=99.80  E-value=8.1e-18  Score=160.54  Aligned_cols=223  Identities=17%  Similarity=0.104  Sum_probs=146.7

Q ss_pred             HHHHHHHHHhHhC---CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           57 RDALESLLAKLDK---ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g---~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      ..+|++.++++++   .+++++++++++|+.++ ..+++|||+|+++.|.|.......+                     
T Consensus        64 ~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~  143 (373)
T PRK07324         64 SPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDL  143 (373)
T ss_pred             CHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence            4589999999874   35677788889999854 4588999999999998876543222                     


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---cc-CCCeEEEeccccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---LE-LGADIVMHSATKF  154 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~~-~~~Di~~~S~sK~  154 (339)
                                                      ++|+++|++||+++|+|++|..-.... .   .. ..-.|+++||||+
T Consensus       144 ~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~  223 (373)
T PRK07324        144 DELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKT  223 (373)
T ss_pred             HHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhh
Confidence                                            889999999999999999986432211 1   11 1224888999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      ++.+|.+ .||++++ +++++.++..+...+.+.+.+...++...++.    +....+..+++.+.+.++|+.++++.. 
T Consensus       224 ~~~~G~R-iG~i~~~-~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~-  300 (373)
T PRK07324        224 YSLPGIR-VGWIAAN-EEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSY-  300 (373)
T ss_pred             cCCccce-eEEEecC-HHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE-
Confidence            9977654 5677775 57888888776544444555544444444432    233344456677888888887766542 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      ..|.                .|..+++.+.......+|+++| ++.|+.+..|..+.                       
T Consensus       301 ~~p~----------------gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~-----------------------  341 (373)
T PRK07324        301 VKPK----------------AVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFD-----------------------  341 (373)
T ss_pred             ECCC----------------ceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccC-----------------------
Confidence            2331                1233344443223455777775 56788877665321                       


Q ss_pred             CCCeEEEEeccC
Q 019543          310 TEDLVRISVGIE  321 (339)
Q Consensus       310 ~~~~lRisvg~e  321 (339)
                      .++.+|||++..
T Consensus       342 ~~~~iRis~~~~  353 (373)
T PRK07324        342 LEGHVRIGYCCD  353 (373)
T ss_pred             CCCeEEEEecCC
Confidence            135799999863

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.80  E-value=8.5e-18  Score=160.15  Aligned_cols=245  Identities=21%  Similarity=0.226  Sum_probs=161.6

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHH-HHHhcC---CCCEEEEcCCCccchHH----HHH------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAA-VTHLLG---TGEEIVAGDDLYGGTDR----LLS------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~-il~ll~---~GD~Vi~~~~~y~~~~~----~~~------------  111 (339)
                      ...+++++.+++++|.+   ++++++|++.|+.. +.++..   +||+|+++++.|++...    ..+            
T Consensus        43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  122 (373)
T cd06453          43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD  122 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence            34678889999999976   66777888889875 445655   89999999987766321    111            


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-cccCCCeEEEeccccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~~~~~~Di~~~S~sK~  154 (339)
                                                          ++|.++|++||++|++|++|+.|.... ....++|++++|++|+
T Consensus       123 ~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  202 (373)
T cd06453         123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKM  202 (373)
T ss_pred             CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccc
Confidence                                                899999999999999999998776532 2245789999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh--------------------cCCCCChHHHHH----HHhchh--hHHHHHH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPFDCWI----CLRGVK--TMALRVE  208 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------------------~~~~~~~~~a~~----~~~~l~--~~~~r~~  208 (339)
                      +++++   +|++++++ ++++.++.....                    +....++..+.+    ++..++  .++.+.+
T Consensus       203 ~~~~g---~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~  278 (373)
T cd06453         203 LGPTG---IGVLYGKE-ELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAA  278 (373)
T ss_pred             cCCCC---cEEEEEch-HHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            99632   57887765 566655432210                    111122222222    122222  2344566


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccce
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      +..++++++.+.|+++++++.+. +.              ...+++++|.+++. ...++.+.|+..|+.++.|..    
T Consensus       279 ~~~~~~~~l~~~l~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~-~~~~i~~~l~~~gi~i~~g~~----  338 (373)
T cd06453         279 HEHELTAYALERLSEIPGVRVYG-DA--------------EDRAGVVSFNLEGI-HPHDVATILDQYGIAVRAGHH----  338 (373)
T ss_pred             HHHHHHHHHHHHHhcCCCeEEeC-Cc--------------cccCCeEEEEECCc-CHHHHHHHHHHCCEEeccCcc----
Confidence            66778889999999888776442 11              11457888887543 345677777777887765532    


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                        |..        ..-..+| .++.||+|++..++++.++.|.++|
T Consensus       339 --~~~--------~~~~~~~-~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         339 --CAQ--------PLMRRLG-VPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             --chh--------HHHHHhC-CCCeEEEEecCCCCHHHHHHHHhhC
Confidence              111        0111233 2468999999999998888887764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.80  E-value=1.2e-17  Score=161.10  Aligned_cols=246  Identities=17%  Similarity=0.134  Sum_probs=158.7

Q ss_pred             chHHHHHHHHHhHhCC-C--eEEEcCcHHHHHHHHHH-----hcCCCCEEEEcCCCccchHH----HHH-----------
Q 019543           55 PTRDALESLLAKLDKA-D--RALCFTSGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDR----LLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-~--~~l~~~sG~~A~~~il~-----ll~~GD~Vi~~~~~y~~~~~----~~~-----------  111 (339)
                      ...+++++.+|+++|+ +  ++++++++++++..++.     .+++||+|+++++.|++...    +.+           
T Consensus        67 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  146 (406)
T PRK09295         67 EKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPL  146 (406)
T ss_pred             HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence            4577899999999986 2  45555556888875442     46899999999876654321    111           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++|+++|+++++|++|+.|... +....++|++++|++|
T Consensus       147 ~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K  226 (406)
T PRK09295        147 NPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHK  226 (406)
T ss_pred             CCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhh
Confidence                                                 89999999999999999999887643 2234688999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHH----------------------HHhcCCCCChHHHHHHHhchhhH-----HHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCWICLRGVKTM-----ALR  206 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~a~~~~~~l~~~-----~~r  206 (339)
                      .+|++|   .|+++.++ ++.+.+...                      .++...+.+....+.+..+++.+     +..
T Consensus       227 ~~gp~G---~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i  302 (406)
T PRK09295        227 LYGPTG---IGILYVKE-ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNI  302 (406)
T ss_pred             ccCCCC---cEEEEEch-HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence            766433   36887775 454443211                      01111122222222222233322     333


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .++.++.++++.+.|+++++++.+ .|.               ..+++++|.+.+. ....+.+.|...||.++.|..  
T Consensus       303 ~~~~~~l~~~l~~~l~~~~~~~~~-~~~---------------~~~~iv~~~~~~~-~~~~~~~~L~~~gI~v~~g~~--  363 (406)
T PRK09295        303 AEYEQNLMHYALSQLESVPDLTLY-GPQ---------------NRLGVIAFNLGKH-HAYDVGSFLDNYGIAVRTGHH--  363 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEe-CCC---------------CCceEEEEEECCc-CHHHHHHHHHhCCeEEecccc--
Confidence            444556778888888888877533 231               1357999987543 234556667778998887642  


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                          |..        .....+|. ++.||+|++..++++.|+.|.++|++
T Consensus       364 ----c~~--------~~~~~~~~-~~~iRiS~~~ynt~~did~l~~~l~~  400 (406)
T PRK09295        364 ----CAM--------PLMAYYNV-PAMCRASLAMYNTHEEVDRLVAGLQR  400 (406)
T ss_pred             ----chH--------HHHHHHCC-CCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                211        01122342 36899999999999999999999975

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.80  E-value=9e-18  Score=160.07  Aligned_cols=252  Identities=21%  Similarity=0.220  Sum_probs=164.9

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHH----H---------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLL----S---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~----~---------------  111 (339)
                      +..+++++.+++++|.+   ++++++|+++++..+ .+++++||+|+++.+.|..+...+    +               
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            66789999999999974   456667888998754 457899999999887766543211    0               


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|+++|+++++|++|+.|... +....++|++++|++|++++
T Consensus       124 ~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~  203 (376)
T TIGR01977       124 LISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLG  203 (376)
T ss_pred             CcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccC
Confidence                                             89999999999999999999988653 33346899999999999987


Q ss_pred             CCCceEEEEEEcChhHHHHHHH----H------------HHhcCCCCChHHHHHHHhchhhH-----HHHHHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELYF----L------------QNAEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQK  216 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~----~------------~~~~~~~~~~~~a~~~~~~l~~~-----~~r~~~~~~~a~~  216 (339)
                      +.+ .|++++.++ .....+..    .            .++...+.+....+....+++.+     +...++..+++++
T Consensus       204 p~g-~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       204 PQG-TGGLYIREG-IKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCC-ceEEEEcCC-cCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            753 345554443 21111110    0            00111122222222222233332     3345666788889


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceecccccc
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFMS  295 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~~~~  295 (339)
                      +.+.|++.++++.+ .|..   +         ...+++++|.+.+. ...++.+.|... ++.++.|...+...++    
T Consensus       282 ~~~~l~~~~~~~~~-~~~~---~---------~~~~~~v~~~~~~~-~~~~~~~~L~~~~gi~v~~g~~~~~~~~~----  343 (376)
T TIGR01977       282 LLNGLREINKVKIY-GPAD---P---------ANRVGVVSFTVEGI-DSEEVADILDEKFDIATRTGLHCAPLAHK----  343 (376)
T ss_pred             HHHHHhcCCCeEEe-CCCC---c---------cccCCeEEEEECCC-CHHHHHHHHhccCCEEEEcccccchHHHH----
Confidence            99999888876533 2211   1         11467899988543 345677788765 8888877543322111    


Q ss_pred             CCCCCHHHHHhCC-CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          296 HASIPVEVRQARG-LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       296 h~~~~~~~~~~~g-~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                .+| ..++.||+|++..++++.++.+.++|++
T Consensus       344 ----------~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       344 ----------TIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             ----------HhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence                      122 2457899999999999999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.80  E-value=1.7e-17  Score=155.62  Aligned_cols=242  Identities=19%  Similarity=0.167  Sum_probs=160.3

Q ss_pred             CCchHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           53 GNPTRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+...++++.++++++        .++.+++++|++|+..++ .+.++||+|+++++.|......++            
T Consensus        34 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~  113 (350)
T cd00609          34 PDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLD  113 (350)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecc
Confidence            44556667777777665        336778888899988655 477899999999988776543322            


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C-------cccC
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R-------PLEL  142 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~-------~~~~  142 (339)
                                                               ++|.++|+++|+++++|++|+.+... .       ....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~  193 (350)
T cd00609         114 EEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAY  193 (350)
T ss_pred             cccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCcc
Confidence                                                     56679999999999999999764431 1       1234


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIA  218 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~  218 (339)
                      +.|++++|++|+++.++ ...|+++++++++.+.++......+...+......+...+    +.+....++..++++++.
T Consensus       194 ~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  272 (350)
T cd00609         194 ERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALL  272 (350)
T ss_pred             CcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            67899999999998333 4578888876468888877665544444544433333333    334555666778888999


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCC
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      +.|+.++.... ..                ...+.++++.+.+......+.+.|++.|+.++.+..+..           
T Consensus       273 ~~L~~~~~~~~-~~----------------~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~-----------  324 (350)
T cd00609         273 EALKELGPLVV-VK----------------PSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE-----------  324 (350)
T ss_pred             HHHHhcCCccc-cC----------------CCccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc-----------
Confidence            99988765321 11                113556777765433344556667777887765432110           


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                ..+..+|++++..  ++.++.+.++|+
T Consensus       325 ----------~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         325 ----------GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ----------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence                      1346899999998  566677777765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.80  E-value=1.7e-17  Score=158.55  Aligned_cols=234  Identities=20%  Similarity=0.187  Sum_probs=149.6

Q ss_pred             CcccCCCCchHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      |..+.+..+.++++.+.+++.+|    .+++++++++++|+..++ .+++|||+|+++++.|......++          
T Consensus        57 Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~  136 (382)
T PRK06108         57 YTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVP  136 (382)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEee
Confidence            33333334556666666666656    356778888899987654 478999999999988765432211          


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--Cc----cc
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RP----LE  141 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~----~~  141 (339)
                                                                  ++|+++|+++|+++|+|++|+...+.  ..    ..
T Consensus       137 ~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~  216 (382)
T PRK06108        137 LDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLD  216 (382)
T ss_pred             CCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhh
Confidence                                                        88999999999999999998754332  11    11


Q ss_pred             ----CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHH
Q 019543          142 ----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDN  213 (339)
Q Consensus       142 ----~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~  213 (339)
                          ....+++.||||.++.+| .+.|++++++ ++++.+.......+...++....++...|+    .++...++.+++
T Consensus       217 ~~~~~~~~i~~~S~SK~~g~~G-~RiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~  294 (382)
T PRK06108        217 IAEPDDRIIFVNSFSKNWAMTG-WRLGWLVAPP-ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRS  294 (382)
T ss_pred             cCCCcCCEEEEeechhhccCcc-cceeeeeCCH-HHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence                123588999999998665 4567887764 677777766543344455554433333332    234555666677


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~  292 (339)
                      .+.+.+.|+.+++++.. .|                ..+..+++.+.+.....+|++.| +..|+.+..|..+.    + 
T Consensus       295 ~~~l~~~L~~~~~~~~~-~p----------------~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~----~-  352 (382)
T PRK06108        295 RDHLVDALRALPGVEVA-KP----------------DGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFG----P-  352 (382)
T ss_pred             HHHHHHHHHhCCCCccc-CC----------------CeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhC----C-
Confidence            78888888877665321 11                12335567775433445677776 56788877664321    1 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEecc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                      ..++.+|||++.
T Consensus       353 ----------------~~~~~~Ris~~~  364 (382)
T PRK06108        353 ----------------GGEGFLRWCFAR  364 (382)
T ss_pred             ----------------CCCCEEEEEecC
Confidence                            124789999998

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.79  E-value=1.6e-17  Score=162.27  Aligned_cols=236  Identities=17%  Similarity=0.169  Sum_probs=158.5

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++++.+.+++....|    .++.+++++.++|+.+++. +++|||.|++++|+|.+...+++                  
T Consensus       136 ~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~  215 (459)
T COG1167         136 ELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDP  215 (459)
T ss_pred             HHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCH
Confidence            555566666654334    3457777777899987665 78999999999999999887665                  


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Ccc----c---CCCeEEEe
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPL----E---LGADIVMH  149 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~----~---~~~Di~~~  149 (339)
                                                        ++|.++|++||++||+||.++...+. .+.    .   .+--|+++
T Consensus       216 e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~g  295 (459)
T COG1167         216 EALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLG  295 (459)
T ss_pred             HHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEe
Confidence                                              99999999999999999999754432 211    1   13349999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH----Hhc-hhh-HHHHHHHHHHHHHHHHHHHhC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC----LRG-VKT-MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~----~~~-l~~-~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      ||||++..  +.+.||+++++ .+++++...+.......+.+....+    ..+ .+. +...++.+.+..+.+.+.|+.
T Consensus       296 SFSK~l~P--glRlG~vv~p~-~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~  372 (459)
T COG1167         296 SFSKTLAP--GLRLGYVVAPP-ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAE  372 (459)
T ss_pred             eehhhccc--ccceeeeeCCH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999993  46788998875 7888888777666666666552222    121 222 233344455666777778877


Q ss_pred             CC-CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc-CCcccceeccccccCCCCCH
Q 019543          224 HP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       224 ~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~-G~~~s~~~~p~~~~h~~~~~  301 (339)
                      +. +...+..|.                .|-.+|+.+.+..+..++.+++...|+.+.. |..+..  .+          
T Consensus       373 ~~~~~~~~~~p~----------------gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~--~~----------  424 (459)
T COG1167         373 YLPELATWTRPE----------------GGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSA--DG----------  424 (459)
T ss_pred             hCCCCeeeecCC----------------ceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccC--CC----------
Confidence            63 233333331                3668888887665567788777777777665 543221  00          


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHH
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLIS  328 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~  328 (339)
                             -..+.+|++++....+++.+
T Consensus       425 -------~~~~~~Rl~~s~~~~e~i~~  444 (459)
T COG1167         425 -------DPRNGLRLSFSSPSEEEIEE  444 (459)
T ss_pred             -------CCCCeEEEEcCCCCHHHHHH
Confidence                   02468999999877665533

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.79  E-value=8.6e-18  Score=161.64  Aligned_cols=245  Identities=17%  Similarity=0.119  Sum_probs=157.4

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHHH-h----cCCCCEEEEcCCCccchHH----HHH-----------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAAVTH-L----LGTGEEIVAGDDLYGGTDR----LLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il~-l----l~~GD~Vi~~~~~y~~~~~----~~~-----------  111 (339)
                      ...+++++.+++++|++   ++++++|+++++..++. +    +++||+|+++++.|++...    ..+           
T Consensus        60 ~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  139 (398)
T TIGR03392        60 ARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI  139 (398)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence            34678999999999973   45566666889875443 4    5899999999988765321    111           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++|++||+++++|++|+.+... +....++|++++|++|
T Consensus       140 ~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K  219 (398)
T TIGR03392       140 GADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHK  219 (398)
T ss_pred             CCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccc
Confidence                                                 99999999999999999999877542 2234578999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH---------------------HhcCCCCChHHHHHHHhchhh-----HHHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKT-----MALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~a~~~~~~l~~-----~~~r~  207 (339)
                      .++++|   .|+++.++ ++.+.+....                     ++...+.+......+..+++.     +....
T Consensus       220 ~~gp~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~  295 (398)
T TIGR03392       220 LYGPTG---IGVLYGKT-ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAE  295 (398)
T ss_pred             ccCCCc---eEEEEEcH-HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            776433   47887765 5555543211                     111112222122222222222     22334


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++..+.++++.+.|+++++++....|                 .+++++|.+.+.. ...+.+.|...||.++.|..   
T Consensus       296 ~~~~~l~~~l~~~l~~l~g~~~~~~~-----------------~~~i~~~~~~~~~-~~~l~~~L~~~gI~v~~g~~---  354 (398)
T TIGR03392       296 AWSVSLADLAEERLAQLPGFRSFRCP-----------------GSSLLAFDFAGVH-HSDLAALLAESGIALRAGQH---  354 (398)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEeCCC-----------------CCcEEEEEeCCcC-HHHHHHHHHhCCEEEecCcc---
Confidence            45556788888889888876532111                 3468888875432 34677778778998887642   


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         |..        .....+|. ++.||+|++..++++.++.+.++|++
T Consensus       355 ---~~~--------~~~~~~g~-~~~iRvS~~~~~t~~ei~~l~~~l~~  391 (398)
T TIGR03392       355 ---CAQ--------PLMAALGV-SGTLRASFAPYNTQQDVDALVDAVGA  391 (398)
T ss_pred             ---chH--------HHHHHhCC-CCEEEEEeeccCCHHHHHHHHHHHHH
Confidence               211        11112332 36899999998888888888888764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.79  E-value=1.5e-17  Score=160.02  Aligned_cols=208  Identities=25%  Similarity=0.256  Sum_probs=134.3

Q ss_pred             CCchHHHHHH----HHHhHhCCCeE-EEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH------------------
Q 019543           53 GNPTRDALES----LLAKLDKADRA-LCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR------------------  108 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~~~-l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~------------------  108 (339)
                      +.+..+.+|+    .+++++|.+.+ ++++||++|+.++ ..+++|||+|+++++.|++...                  
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  138 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVP  138 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEec
Confidence            3444555554    56789998765 4556899998854 4588999999998876643210                  


Q ss_pred             -----------------HHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCC-----cCcccCCCeE
Q 019543          109 -----------------LLS--------------------RKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADI  146 (339)
Q Consensus       109 -----------------~~~--------------------~~I~~la~~~g~~livD~a~a~g~~-----~~~~~~~~Di  146 (339)
                                       .+.                    ++|.++|++||+++++|++|..|..     ..++. ++|+
T Consensus       139 ~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv  217 (402)
T cd00378         139 YGVDPETGLIDYDALEKMALEFKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADV  217 (402)
T ss_pred             CCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcE
Confidence                             010                    9999999999999999999866542     12233 6799


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHH--HHh-chh-hHHHHHHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWI--CLR-GVK-TMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~--~~~-~l~-~~~~r~~~~~~~a~~l~~~  220 (339)
                      +++|+||+++|+   .||+++++++++.++++.....  .+....+..+.+  ++. .++ ..+.+++++.++++++.+.
T Consensus       218 ~~~s~sK~l~G~---~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  294 (402)
T cd00378         218 VTTTTHKTLRGP---RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEA  294 (402)
T ss_pred             EEeccccCCCCC---CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999643   4788888765677777654421  122111222111  111 222 3456777888999999999


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeeccc
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~  281 (339)
                      |+++ ++..+..|                ..+.++++.+.+. ....++.+.|+..|+.++.
T Consensus       295 L~~~-g~~~~~~~----------------~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~  339 (402)
T cd00378         295 LKER-GFKVVSGG----------------TDNHLVLVDLRPKGITGKAAEDALEEAGITVNK  339 (402)
T ss_pred             HHhC-CCeEeecC----------------CCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcC
Confidence            9886 55432222                1367888887531 1233555566777887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.79  E-value=2.9e-17  Score=158.08  Aligned_cols=237  Identities=12%  Similarity=0.106  Sum_probs=150.1

Q ss_pred             HHHHHHHHHhHh----C----C-CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----K----A-DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~-~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |    . +++++++++++|+..+ ..+++|||+|++++|.|+.....+.               
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~  150 (399)
T PRK07681         71 IQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKEN  150 (399)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCC
Confidence            345556666554    3    2 3466666668898754 4578999999999998876653322               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-cc----CCC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-LE----LGA  144 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~-~~----~~~  144 (339)
                                                            ++|+++|++||++||+|++|+...+..    . ..    ...
T Consensus       151 ~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T PRK07681        151 DFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEV  230 (399)
T ss_pred             CCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCccc
Confidence                                                  789999999999999999997433211    1 11    123


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~  220 (339)
                      .|+++||||.++.+| .+.||++++ +++++.+.......+...+......+...++    .+....++.+++.+.+.+.
T Consensus       231 ~i~~~S~SK~~~~~G-lRiG~~i~~-~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  308 (399)
T PRK07681        231 GVEINSLSKSYSLAG-SRIGYMIGN-EEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDG  308 (399)
T ss_pred             EEEEeecccccCCcc-ceeEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999998766 456788776 4788888776655555555544444433332    2344455566777888888


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccceeccccccCCCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      |+.+ +++ +..|                ..|..+++.+.+.....+|++.|.. .|+.+..|..+.    +        
T Consensus       309 L~~~-g~~-~~~p----------------~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~----~--------  358 (399)
T PRK07681        309 FRTF-GWN-VDKP----------------AGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFG----P--------  358 (399)
T ss_pred             HHHC-CCc-ccCC----------------CeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhC----c--------
Confidence            8876 442 2222                1356777777543344567777644 788877664321    0        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                               -.++.+|||++..  ++.++...+.|++
T Consensus       359 ---------~~~~~iRis~~~~--~~~~~~~l~~l~~  384 (399)
T PRK07681        359 ---------HGEGFVRIALVQD--EEVLQQAVENIRN  384 (399)
T ss_pred             ---------CCCCeEEEEecCC--HHHHHHHHHHHHH
Confidence                     0246899999842  3434444444443

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.78  E-value=2.2e-17  Score=159.06  Aligned_cols=249  Identities=20%  Similarity=0.171  Sum_probs=158.5

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHHH-----hcCCCCEEEEcCCCccchHH----HHH-----------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDR----LLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il~-----ll~~GD~Vi~~~~~y~~~~~----~~~-----------  111 (339)
                      ...+++++.+++++|++   ++++++++++++..++.     .+++||+|+++++.|++...    +..           
T Consensus        62 ~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~  141 (403)
T TIGR01979        62 EAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL  141 (403)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec
Confidence            35678889999999975   46666666888765432     36899999999886655321    110           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++|++||+++++|++|+.|.. .+....++|++++|++|
T Consensus       142 ~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K  221 (403)
T TIGR01979       142 DDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHK  221 (403)
T ss_pred             CCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEeccc
Confidence                                                 9999999999999999999988754 23334678999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH---------------------HhcCCCCChHHHHHHHhchhh-----HHHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ---------------------NAEGSGLAPFDCWICLRGVKT-----MALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~---------------------~~~~~~~~~~~a~~~~~~l~~-----~~~r~  207 (339)
                      ++|+.|   .|+++.++ ++.+.+....                     ++...+.+....+.+..+++.     .+...
T Consensus       222 ~~gp~G---~g~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~  297 (403)
T TIGR01979       222 MYGPTG---IGVLYGKE-ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIE  297 (403)
T ss_pred             ccCCCC---ceEEEEch-HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHH
Confidence            886433   47887765 4555443110                     011112222222222222322     23345


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++..+.++++.+.|+++++++. ..|.-   +         ...++++.|.+.+. ...++.+.|+..||.++.|...+ 
T Consensus       298 ~~~~~l~~~l~~~l~~~~g~~~-~~~~~---~---------~~~~~~v~~~~~~~-~~~~~~~~L~~~gI~v~~g~~~~-  362 (403)
T TIGR01979       298 AHEHELTAYALERLGEIPGLRI-YGPRD---A---------EDRGGIISFNVEGV-HPHDVGTILDEEGIAVRSGHHCA-  362 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEE-eCCCC---c---------cccCceEEEEeCCc-CHHHHHHHHhhCCEEEcchhhhh-
Confidence            5666778888888888887753 33321   0         11467888887543 23466777888899888664211 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        .|           ....+| .++.+|||++..++++.++.+.++|++
T Consensus       363 --~~-----------~~~~~~-~~~~iRiS~~~~~t~~di~~l~~~l~~  397 (403)
T TIGR01979       363 --QP-----------LMRRFG-VPATCRASFYIYNTEEDIDALVEALKK  397 (403)
T ss_pred             --HH-----------HHHHhC-CCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence              11           111233 246899999988777777777777754

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.78  E-value=4.7e-17  Score=148.41  Aligned_cols=240  Identities=20%  Similarity=0.235  Sum_probs=169.4

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCC--c--c-chHHHHH---------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDL--Y--G-GTDRLLS---------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~--y--~-~~~~~~~---------  111 (339)
                      ..|+  .+|.++++|+++++++|.+.+++++|||+||.+ +.+.++||+.||+....  |  . |-..++.         
T Consensus        29 ~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~  106 (342)
T COG2008          29 DVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQKLPIVP  106 (342)
T ss_pred             CCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCceeccCC
Confidence            4566  789999999999999999999999999999985 55688999999997541  1  0 1111110         


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCc------CCCCCcCc
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSI------MSPVLSRP  139 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~------a~g~~~~~  139 (339)
                                                                    ++|.++||+||++|.+|.|-      +.+....-
T Consensus       107 g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~  186 (342)
T COG2008         107 GADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKT  186 (342)
T ss_pred             CCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHH
Confidence                                                          89999999999999999975      12211112


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh--HHHHHHHhchhhHHHHHHHHHHH--HH
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCWICLRGVKTMALRVEKQQDN--AQ  215 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~--~~a~~~~~~l~~~~~r~~~~~~~--a~  215 (339)
                      ...++|++.+++||.++.+    +|.|+..+.+++.+++.+++..|..++.  +.++..+..|++...++...++|  ++
T Consensus       187 ~~~~~D~v~~~~tK~g~~~----~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~  262 (342)
T COG2008         187 IKSYVDSVSFCLTKGGGAP----VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAA  262 (342)
T ss_pred             HHhhCCEEEEecccCCcce----eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3458899999999999843    5666666678999999998888877665  44555566677777788888888  99


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHHccCCcceeecccCCcccceeccccc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +|++.|+..++++ +..|.                .+.++-+.++... ...++...+...++..+-+            
T Consensus       263 ~La~~~~~~~G~~-~~~~~----------------~tN~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~------------  313 (342)
T COG2008         263 RLAEGLEAKPGVK-LAFPV----------------ETNMVFVRLPESAIEALRLAGALFYRGVLIGAH------------  313 (342)
T ss_pred             HHHHhhhhcCCce-eccCC----------------cccEEEEECChHHHHHHHhhchhheeeeeccCC------------
Confidence            9999999888875 33331                4567777776432 2223333333322221100            


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                     . ..+|+-...+..++.++.+..+++++
T Consensus       314 ---------------~-~~vRfvts~a~~~edv~~~~~~~~~~  340 (342)
T COG2008         314 ---------------G-EIVRFVTSWATSEEDVDELVAAIKAL  340 (342)
T ss_pred             ---------------C-ceEEEEeeccCCHHHHHHHHHHHHHh
Confidence                           0 35888888777777777887777653

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.78  E-value=2.7e-17  Score=159.53  Aligned_cols=251  Identities=18%  Similarity=0.163  Sum_probs=158.5

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHHH-----hcCCCCEEEEcCCCccchHHHH----H-----------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAAVTH-----LLGTGEEIVAGDDLYGGTDRLL----S-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il~-----ll~~GD~Vi~~~~~y~~~~~~~----~-----------  111 (339)
                      ...+++++.+++++|++   ++++++++++++..++.     .+++||+|+++++.|++....+    +           
T Consensus        76 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~  155 (424)
T PLN02855         76 DAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL  155 (424)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec
Confidence            34578899999999973   45566666888875543     3689999999988666532111    1           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|+++|+++|+++++|++|+.|... +....++|++++|++|
T Consensus       156 ~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K  235 (424)
T PLN02855        156 TPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHK  235 (424)
T ss_pred             CCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeeccc
Confidence                                                 89999999999999999999877542 3334678999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH--------------------HhcCCCCChHHHHH-HHhchhh-----HHHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ--------------------NAEGSGLAPFDCWI-CLRGVKT-----MALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~--------------------~~~~~~~~~~~a~~-~~~~l~~-----~~~r~  207 (339)
                      .+| +.+  .|+++.++ ++.+.+....                    .-+..+.++..... +..+++.     ++...
T Consensus       236 ~~g-p~G--~G~l~~~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~  311 (424)
T PLN02855        236 MCG-PTG--IGFLWGKS-DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIH  311 (424)
T ss_pred             ccC-CCc--cEEEEEch-hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            655 432  47887775 4555443210                    00111112222222 2222332     23334


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKS  286 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s  286 (339)
                      ++..+.++++.+.|+++++++.+ .|. ++++         ...+++++|.+.+. ...++.+.|... +|.++.|..  
T Consensus       312 ~~~~~l~~~l~~~L~~~~g~~i~-~~~-~~~~---------~~r~~~v~~~~~~~-~~~~v~~~L~~~~gI~v~~g~~--  377 (424)
T PLN02855        312 EYEVELGTYLYEKLSSVPGVRIY-GPK-PSEG---------VGRAALCAFNVEGI-HPTDLSTFLDQQHGVAIRSGHH--  377 (424)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEe-CCC-cccc---------cCcccEEEEEECCc-CHHHHHHHhcccCCEEEechhh--
Confidence            44556677888888888887533 231 1111         11467999987543 234677777665 888886642  


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                          |....|        ...|+ ++.||+|++..++++.++.|.++|++
T Consensus       378 ----c~~~~~--------~~~g~-~~~iRiS~~~ynt~~di~~l~~~l~~  414 (424)
T PLN02855        378 ----CAQPLH--------RYLGV-NASARASLYFYNTKEEVDAFIHALKD  414 (424)
T ss_pred             ----hhHHHH--------HHhCC-CCeEEEEeccCCCHHHHHHHHHHHHH
Confidence                211111        22343 36799999999888888888888864

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.78  E-value=4.9e-17  Score=155.01  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=145.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchH----------------------HH
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTD----------------------RL  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~----------------------~~  109 (339)
                      ..+.++++|+++|+++|++++++|+||+.|+..+.. +.++||.|+++...+..+.                      ..
T Consensus        54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~  133 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESL  133 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHH
Confidence            457899999999999999999999999999876554 4578898887554322211                      11


Q ss_pred             HH---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-----cCC---CeEEEeccccc
Q 019543          110 LS---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-----ELG---ADIVMHSATKF  154 (339)
Q Consensus       110 ~~---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-----~~~---~Di~~~S~sK~  154 (339)
                      ++                           ++|.++|+++|+++++|++|+.|..+...     .++   .++.+.|+||.
T Consensus       134 l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~  213 (370)
T PRK05937        134 LESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKA  213 (370)
T ss_pred             HHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhh
Confidence            10                           99999999999999999999987653211     122   24678899999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHH--HhcCCCCChHHHHHHHhchhhHH----HHHHHHHHHHHHHHHHHhCCCCce
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTMA----LRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~--~~~~~~~~~~~a~~~~~~l~~~~----~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      +|+.    |+.++..+ +..+.+....  ..++.++++...+.+..+++.+.    ...++.+++.+++.+.|...    
T Consensus       214 ~g~~----G~~vl~~~-~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~----  284 (370)
T PRK05937        214 LGSM----GAALLSSS-EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA----  284 (370)
T ss_pred             hhcC----ceEEEcCH-HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC----
Confidence            9854    33444543 4444444221  12345566665444444444432    22334444455555444321    


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                                           +.+.+.+|.+++.. ...+.+.|...|+.++.      +..|                 
T Consensus       285 ---------------------~~~~~~~i~~~~~~-~~~~~~~L~~~gi~v~~------~~~~-----------------  319 (370)
T PRK05937        285 ---------------------APGCVQPIFLPGIS-EQELYSKLVETGIRVGV------VCFP-----------------  319 (370)
T ss_pred             ---------------------CCCCEEEEEeCChh-HHHHHHHHHHCCeeEEe------eCCC-----------------
Confidence                                 01234566665443 35677777777776541      1122                 


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       ..+.||+|++..++++.++.+.++|++
T Consensus       320 -~~~~iRis~~~~~t~edid~l~~~L~~  346 (370)
T PRK05937        320 -TGPFLRVNLHAFNTEDEVDILVSVLAT  346 (370)
T ss_pred             -CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence             235799999998888888888888764

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.77  E-value=8.4e-18  Score=148.47  Aligned_cols=255  Identities=18%  Similarity=0.250  Sum_probs=181.9

Q ss_pred             cccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHH-HHHH-hcCCCCEEEEcC
Q 019543           31 YQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTH-LLGTGEEIVAGD  100 (339)
Q Consensus        31 ~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~-~il~-ll~~GD~Vi~~~  100 (339)
                      .+|.|++.++++        ..+...|+  ..|+..+||++.|+++|.|.+++++||+..|. +++. +-++|.+||+.+
T Consensus        26 LRSDTvT~PTdeMr~am~eA~vgDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd  103 (384)
T KOG1368|consen   26 LRSDTVTVPTDEMRRAMAEASVGDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGD  103 (384)
T ss_pred             cccccccCChHHHHHHHhhcccCccccc--CCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEecc
Confidence            467788777764        23455677  78999999999999999999999999998886 5666 556999999987


Q ss_pred             CC----cc-chHHHHH----------------------------------------------------------HHHHHH
Q 019543          101 DL----YG-GTDRLLS----------------------------------------------------------RKIAEM  117 (339)
Q Consensus       101 ~~----y~-~~~~~~~----------------------------------------------------------~~I~~l  117 (339)
                      ..    |. |....+.                                                          ++|.++
T Consensus       104 ~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~l  183 (384)
T KOG1368|consen  104 RAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKAL  183 (384)
T ss_pred             chheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHH
Confidence            52    21 1111110                                                          889999


Q ss_pred             HHHcCCEEEEeCCc------CCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh-
Q 019543          118 AHAHGALLLVDNSI------MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP-  190 (339)
Q Consensus       118 a~~~g~~livD~a~------a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~-  190 (339)
                      |++||+.|..|.|-      +.|+..+.+...+|-+...+||.+|.|   +|.+++++ .+++++.+.++..+|.++-. 
T Consensus       184 ak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~-k~FI~kA~~~RKalGGGmRQs  259 (384)
T KOG1368|consen  184 AKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGS-KDFIDKARHFRKALGGGMRQS  259 (384)
T ss_pred             HhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEcc-HHHHHHHHHHHHHhcCchhHH
Confidence            99999999999874      344433333335687888899999854   45566655 58999999999888766644 


Q ss_pred             -HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHH
Q 019543          191 -FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHV  268 (339)
Q Consensus       191 -~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~  268 (339)
                       ..+++++-+|+.....+++-++.+..++++++..+.|+ +..|..               .+.|+-+++. ..-.+..+
T Consensus       260 GvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~-v~v~a~---------------etNiv~~~l~q~~~~~~~l  323 (384)
T KOG1368|consen  260 GVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIR-VEVPAV---------------ETNIVNMVLCQARLTAEEL  323 (384)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcccccee-eecchh---------------hcceeeeecccccCCHHHH
Confidence             56677777777766678888899999999999877664 444432               3567776652 33346778


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      ++.++..|+..-.|                           ...++|+.+..--+++.++.+..++
T Consensus       324 ~~~~~k~gi~lm~~---------------------------~s~r~Rivlh~Qvt~~~ve~~~~~~  362 (384)
T KOG1368|consen  324 CKFLEKNGILLMGG---------------------------ASRRIRIVLHHQVTDEDVEYVKSVL  362 (384)
T ss_pred             HHHHHHCCeEEeec---------------------------cccceEEEEEEecCHHHHHHHHHHH
Confidence            88887777754322                           2245888887665666666666655

>PRK08960 hypothetical protein; Provisional

Probab=99.77  E-value=1.1e-16  Score=153.49  Aligned_cols=231  Identities=16%  Similarity=0.077  Sum_probs=147.6

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...+|++.++++++        .+++++++++++|+..++ .+++|||+|+++++.|+.....+.               
T Consensus        70 g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~  149 (387)
T PRK08960         70 GLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDS  149 (387)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCccc
Confidence            34567777777652        346777777799998654 478999999999999876543332               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---ccCC-CeEEE
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---LELG-ADIVM  148 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~~~~-~Di~~  148 (339)
                                                            ++|+++|++||+++|+|++|..-.+.. .   .... -.+++
T Consensus       150 ~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~  229 (387)
T PRK08960        150 RYQLTPALVERHWNADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVL  229 (387)
T ss_pred             CCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEE
Confidence                                                  788899999999999999986433211 1   1111 23788


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHHHhC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +||||.+|.+| .+.|++++++ ++++.+......++...+.+...++...+     +.+....++..++.+.+.+.|+.
T Consensus       230 ~S~SK~~g~~G-lRiG~~~~~~-~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~  307 (387)
T PRK08960        230 NSFSKYFGMTG-WRLGWLVAPP-AAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE  307 (387)
T ss_pred             eecccccCCcc-cEEEEEEcCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998776 4567888764 67787777665555555555433333333     22344455666777888888887


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      ++ +..+..|.                .+..+++.+.+ .....+|++.| +..|+.+..|..+..   +          
T Consensus       308 ~~-~~~~~~p~----------------g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~----------  357 (387)
T PRK08960        308 LG-FGIAVEPQ----------------GAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR---H----------  357 (387)
T ss_pred             cC-CcCCcCCC----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC---C----------
Confidence            63 32212231                24456666643 12345677665 457888877643321   0          


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHH
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDL  326 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~l  326 (339)
                             ..++.+|++++. +.+.+
T Consensus       358 -------~~~~~iRi~~~~-~~~~l  374 (387)
T PRK08960        358 -------QAGQHVRFAYTQ-SLPRL  374 (387)
T ss_pred             -------CCCCeEEEEecC-CHHHH
Confidence                   023679999996 34443

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.77  E-value=1.3e-16  Score=153.24  Aligned_cols=238  Identities=17%  Similarity=0.142  Sum_probs=154.3

Q ss_pred             hHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ....|++.+++++    |    .++.++++++++|+..++ .++++||+|+++++.|.+....++               
T Consensus        69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  148 (393)
T PRK05764         69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEEN  148 (393)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCccc
Confidence            4567788887775    3    245777777789998644 578999999999998876543222               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c---c---cCC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P---L---ELG  143 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~---~---~~~  143 (339)
                                                            ++|+++|++||+++++|++|+...+..    .   +   ..+
T Consensus       149 ~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~  228 (393)
T PRK05764        149 GFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRD  228 (393)
T ss_pred             CCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcC
Confidence                                                  789999999999999999997543211    1   1   123


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~  219 (339)
                      .+++++||||.++.+|. ..|+++++ +++++.++......+...++...+.+...++    .+....++..++.+.+.+
T Consensus       229 ~~i~~~s~SK~~~~~G~-RiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  306 (393)
T PRK05764        229 RTITVNGFSKAYAMTGW-RLGYAAGP-KELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVD  306 (393)
T ss_pred             CEEEEecCcccccCccc-eeEEEecC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence            47999999999987764 45788766 5788888776655555666666555544443    234445556677888888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-----HHHHHHccC-CcceeecccCCcccceecccc
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-----LSKHVVETT-KYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-----~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .|++++++.. ..|                ..+..+++.+.+..     ...++.+.+ +..|+.+..|..+.       
T Consensus       307 ~L~~~~g~~~-~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~-------  362 (393)
T PRK05764        307 GLNEIPGLEC-PKP----------------EGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFG-------  362 (393)
T ss_pred             HHhhCCCCcc-cCC----------------CcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccC-------
Confidence            9988766532 111                12345566654321     135666655 55788877654321       


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~  335 (339)
                                      .++.+|||++.  ++.++.++.|.++++
T Consensus       363 ----------------~~~~vRis~~~~~~~~~~~i~~l~~~~~  390 (393)
T PRK05764        363 ----------------APGYVRLSYATSLEDLEEGLERIERFLE  390 (393)
T ss_pred             ----------------CCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence                            13679999985  333444555555544

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.76  E-value=3.4e-17  Score=157.32  Aligned_cols=247  Identities=19%  Similarity=0.131  Sum_probs=154.8

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-H---hcCCCCEEEEcCCCccchHHHH----H-------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-H---LLGTGEEIVAGDDLYGGTDRLL----S-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~---ll~~GD~Vi~~~~~y~~~~~~~----~-------------  111 (339)
                      +..+++++.+++++|++  .+++.++++.++..++ .   .++|||+|+++++.|.+....+    +             
T Consensus        60 ~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~  139 (397)
T TIGR01976        60 QVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE  139 (397)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc
Confidence            56789999999999975  3555566677765332 2   4689999999988665432111    1             


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~  154 (339)
                                                          ++|.++|++||+++++|++|+.|... +....++|++++|++|+
T Consensus       140 ~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~  219 (397)
T TIGR01976       140 ATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKF  219 (397)
T ss_pred             cCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhh
Confidence                                                99999999999999999999766432 33346889999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh---------c-CCCCChHHHHHHHhchhhH-------------------HH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA---------E-GSGLAPFDCWICLRGVKTM-------------------AL  205 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~---------~-~~~~~~~~a~~~~~~l~~~-------------------~~  205 (339)
                      +|.    ..|++++++ ++++.+......         + ..+.+....+.+..+++.+                   +.
T Consensus       220 ~g~----~~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~  294 (397)
T TIGR01976       220 FGP----HMGILWGRP-ELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQA  294 (397)
T ss_pred             cCC----ceEEEEEcH-HHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHH
Confidence            862    267888875 566555432110         1 1122222111121222221                   22


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcc
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  285 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~  285 (339)
                      ..++..+.++++.+.|+++++++.+. |. +  +         ...+++++|.+.+. ...++.++|...||.++.|...
T Consensus       295 ~~~~~~~l~~~l~~~L~~~~~~~~~~-~~-~--~---------~~~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~~~~~  360 (397)
T TIGR01976       295 IDAYENRLAEYLLVGLSDLPGVTLYG-VA-R--L---------AARVPTVSFTVHGL-PPQRVVRRLADQGIDAWAGHFY  360 (397)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEeC-CC-C--c---------cCCCceEEEEeCCc-CHHHHHHHHHHCCeEEEeCccc
Confidence            23334456777888888877664322 21 0  0         12467888887543 3456788888889988855321


Q ss_pred             cceeccccccCCCCCHHHHHhCCCC--CCeEEEEeccCCHHHHHHHHHHHH
Q 019543          286 SLISMPCFMSHASIPVEVRQARGLT--EDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       286 s~~~~p~~~~h~~~~~~~~~~~g~~--~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      .      .        ......|++  .+.+|+|++..++++.++.+.++|
T Consensus       361 ~------~--------~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       361 A------V--------RLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             h------H--------HHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            1      0        001122332  467999999999999888888765

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.76  E-value=6.2e-18  Score=164.26  Aligned_cols=168  Identities=25%  Similarity=0.368  Sum_probs=126.1

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCC-Cc--cchHHH---HH----------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD-LY--GGTDRL---LS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~-~y--~~~~~~---~~----------------  111 (339)
                      ++..+.+|+.+++++|++++++|+||++|+.+++..+.+||+||+++. .|  ++...+   +.                
T Consensus       126 g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~  205 (464)
T PRK04311        126 GSRDRALAALLCALTGAEDALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTH  205 (464)
T ss_pred             chHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCC
Confidence            355789999999999999999999999999877777799999999875 33  332211   11                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCC------------CCCcCcccCCCe
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMS------------PVLSRPLELGAD  145 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~------------g~~~~~~~~~~D  145 (339)
                                                        ++|+++||+||+++++|++++.            +...+++..|+|
T Consensus       206 ~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD  285 (464)
T PRK04311        206 LRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD  285 (464)
T ss_pred             HHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence                                              8999999999999999995421            111234557999


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHH--HHH---hcCCCCChHHH-----------HHHHhchhhHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQN---AEGSGLAPFDC-----------WICLRGVKTMALRVEK  209 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~--~~~---~~~~~~~~~~a-----------~~~~~~l~~~~~r~~~  209 (339)
                      ++++|.+|+++||   .+|++++++ +++++++.  +.+   .-+..++++.+           +..+..++++..|+++
T Consensus       286 iv~fSg~K~LgGp---~~G~i~g~~-~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~  361 (464)
T PRK04311        286 LVTFSGDKLLGGP---QAGIIVGKK-ELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEE  361 (464)
T ss_pred             EEEecCcccccCC---ceEEEEEcH-HHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHH
Confidence            9999999999987   478998875 67777663  111   12344444443           3344556678889999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 019543          210 QQDNAQKIAEFLASHP  225 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~  225 (339)
                      +++++++++++|+.++
T Consensus       362 ~~~~A~~la~~L~~~~  377 (464)
T PRK04311        362 LRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999875

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.76  E-value=3.8e-17  Score=159.68  Aligned_cols=255  Identities=20%  Similarity=0.164  Sum_probs=152.7

Q ss_pred             CCcccCC--CCchHHHHHH----HHHhHhCCC-eEEEc----CcHHHHHHH-HHHhcCCCCEEEEcCC-----Cccch--
Q 019543           46 PYDYTRS--GNPTRDALES----LLAKLDKAD-RALCF----TSGMAALAA-VTHLLGTGEEIVAGDD-----LYGGT--  106 (339)
Q Consensus        46 ~~~y~r~--~~~~~~~le~----~la~~~g~~-~~l~~----~sG~~A~~~-il~ll~~GD~Vi~~~~-----~y~~~--  106 (339)
                      ++..+|+  ++..++++|+    +..++++++ ..+++    +||+.||.+ +.++++|||+|++.+.     ..++.  
T Consensus        65 G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~  144 (475)
T PLN03226         65 GLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQT  144 (475)
T ss_pred             CCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhh
Confidence            4555564  5578889987    445556655 45555    899999985 5569999999998542     00110  


Q ss_pred             -------------------------------HHHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCC
Q 019543          107 -------------------------------DRLLS--------------------RKIAEMAHAHGALLLVDNSIMSPV  135 (339)
Q Consensus       107 -------------------------------~~~~~--------------------~~I~~la~~~g~~livD~a~a~g~  135 (339)
                                                     ...+.                    ++|.++|++||+++++|++|++|+
T Consensus       145 ~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gl  224 (475)
T PLN03226        145 DGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGL  224 (475)
T ss_pred             cccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCc
Confidence                                           01111                    899999999999999999999887


Q ss_pred             CcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHH-----------HH--HHHHHH--hcCCCCChHHHHH
Q 019543          136 LSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-----------KE--LYFLQN--AEGSGLAPFDCWI  195 (339)
Q Consensus       136 ~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~-----------~~--l~~~~~--~~~~~~~~~~a~~  195 (339)
                      ...     ++. ++|++++|++|+|.|+   .||+|++++ ...           +.  ..+...  .+.+++++...+.
T Consensus       225 i~~~~~~~p~~-~~Div~~t~hK~L~GP---~Gg~I~~~~-~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaa  299 (475)
T PLN03226        225 VAAQEAASPFE-YCDVVTTTTHKSLRGP---RGGMIFFRK-GPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAA  299 (475)
T ss_pred             ccCCCCCCCCC-CCeEEEecCcccccCC---CceEEEEch-hhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHH
Confidence            632     233 6899999999999765   378888875 332           22  111111  2344555554443


Q ss_pred             HHhchhh-----HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHH
Q 019543          196 CLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVV  269 (339)
Q Consensus       196 ~~~~l~~-----~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~  269 (339)
                      +..+++.     .+.+.++..+|++++++.|++ .++..+. ++               ...+++.|.+.. .....++.
T Consensus       300 l~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~-~~---------------t~~hi~lv~~~~~gi~~~~~~  362 (475)
T PLN03226        300 LAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVT-GG---------------TDNHLVLWDLRPLGLTGSRVE  362 (475)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEc-CC---------------CCCCEEEEEccCCCCCHHHHH
Confidence            3334443     345678888999999999987 4554332 21               123455554421 11122344


Q ss_pred             ccCCcceeecccCC---cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          270 ETTKYFSITVSFGS---VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       270 ~~L~~~~i~v~~G~---~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.|...+|.++-+.   ..+.+..|..            +.| +....|..++.++++.+.+.|.++|+
T Consensus       363 ~~L~~~~I~~nk~~~p~~~~~~~~~gi------------RiG-t~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        363 KVLDLAHITLNKNAVPGDSSALVPGGV------------RIG-TPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             HHHHHCCCEECCCCCCCCcccCCCCCc------------ccC-cHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            44555677766442   1111111110            111 11234445566778888888888876

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.76  E-value=9.7e-17  Score=151.91  Aligned_cols=241  Identities=20%  Similarity=0.154  Sum_probs=156.7

Q ss_pred             chHHHHHHHHHhHhCCC--e-EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccch--HHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGT--DRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~-~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~--~~~~~-----------------  111 (339)
                      ...+++++.+++++|++  + +++++||++|+..++ +++++||+|+++++.+.+.  ....+                 
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  111 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAV  111 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCC
Confidence            45789999999999973  3 556777899987544 5889999999987755442  11111                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|+++|+++++|++|+.|.. .+....++|++++|++|+++++
T Consensus       112 ~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p  191 (356)
T cd06451         112 SPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAP  191 (356)
T ss_pred             CHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCC
Confidence                                            8999999999999999999987753 2333457899999999999976


Q ss_pred             CCceEEEEEEcChhHHHHHHH----H---------HH------hcCCCCChHHHHHHHhchh-----hHHHHHHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYF----L---------QN------AEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNA  214 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~----~---------~~------~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a  214 (339)
                      .+  .|+++.++ ++.+.+..    .         ..      ..+.+.++...+.+..+++     .++...++..+++
T Consensus       192 ~g--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~  268 (356)
T cd06451         192 PG--LGPIAFSE-RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLA  268 (356)
T ss_pred             CC--cceeEECH-HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            43  57888775 56666542    0         00      1112223322222222222     2344566667788


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceecccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCF  293 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~~  293 (339)
                      +++.+.|++. +++.+ .+  +.           ...+.++++.+++.....++++.|... ||.++.|..      |. 
T Consensus       269 ~~l~~~L~~~-g~~~~-~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~------~~-  326 (356)
T cd06451         269 KALREGLEAL-GLKLL-AK--PE-----------LRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLG------PT-  326 (356)
T ss_pred             HHHHHHHHHc-CCeec-cC--cc-----------cCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccc------cc-
Confidence            8899988876 44322 11  10           002234455554333456788888776 887765431      10 


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                      .++.||+|++..++++.++.+.++|++
T Consensus       327 ----------------~~~~iRis~~~~~~~e~v~~~~~~l~~  353 (356)
T cd06451         327 ----------------AGKVFRIGHMGEATREDVLGVLSALEE  353 (356)
T ss_pred             ----------------cCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence                            235899999988888888888888865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.76  E-value=2.2e-16  Score=151.18  Aligned_cols=233  Identities=15%  Similarity=0.103  Sum_probs=145.3

Q ss_pred             HHHHHHHHhHh----CC----C-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           58 DALESLLAKLD----KA----D-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g~----~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+|++.+++++    |.    + .+++++++++++..++ .++++||+|++++|.|+.....++                
T Consensus        70 ~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g  149 (383)
T TIGR03540        70 LAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENG  149 (383)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccC
Confidence            34555555543    43    3 3445556688987654 478999999999998876543221                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c---cc--CCCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P---LE--LGAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~---~~--~~~D  145 (339)
                                                           ++|+++|++||++||+|++|+...+..    .   +.  ....
T Consensus       150 ~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~  229 (383)
T TIGR03540       150 FLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVG  229 (383)
T ss_pred             CccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCE
Confidence                                                 889999999999999999997433211    1   11  1235


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L  221 (339)
                      |++.||||.+|.+| .+.||++++ +++.+.+...+...+...+......+...+    +.++..+++..++.+.+.+.|
T Consensus       230 i~~~SfSK~~g~~G-lRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  307 (383)
T TIGR03540       230 IEFHSLSKTYNMTG-WRIGMAVGN-ADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEAL  307 (383)
T ss_pred             EEEEecccccCCcc-ceeeEEeCC-HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999998666 455688776 468887776655444444443333333333    223444556677788888999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      +++ ++. +..|                ..+..+++.+.+.....+|++.| +..|+.+..|..+..             
T Consensus       308 ~~~-~~~-~~~~----------------~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~-------------  356 (383)
T TIGR03540       308 KKI-GID-VEKP----------------KATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE-------------  356 (383)
T ss_pred             HhC-CCE-ecCC----------------CcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCc-------------
Confidence            876 443 2212                12445777775433456777775 567888876643210             


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                              -.++.+|||++.. .+    .+.++++.
T Consensus       357 --------~~~~~~Ris~~~~-~~----~l~~~l~~  379 (383)
T TIGR03540       357 --------YGEGYIRISLTVP-DE----RLEEAVAR  379 (383)
T ss_pred             --------cCCCeEEEEecCC-HH----HHHHHHHH
Confidence                    0246899999853 33    45555543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.76  E-value=2.1e-16  Score=152.76  Aligned_cols=207  Identities=14%  Similarity=0.078  Sum_probs=133.3

Q ss_pred             HHHHHHHHHhHh----CC----C-eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----KA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g~----~-~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |.    + +.++++++++|+.. +..+++|||+|+++++.|......++               
T Consensus        93 ~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  172 (413)
T PLN00175         93 VPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD  172 (413)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc
Confidence            334555555544    42    3 35666667899875 44588999999999998876543322               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc-c----CCCeE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL-E----LGADI  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~-~----~~~Di  146 (339)
                                                           ++|+++|++||++||+|++|....+..   ++ .    ....|
T Consensus       173 ~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi  252 (413)
T PLN00175        173 FAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTV  252 (413)
T ss_pred             CCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEE
Confidence                                                 789999999999999999997544321   11 1    12358


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHh
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      +++||||.++.+|.+ .||+++++ ++++.+.........+.+.....++...|+    .++...+++.++.+.+.+.|+
T Consensus       253 ~i~SfSK~~~~~G~R-iG~~v~~~-~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  330 (413)
T PLN00175        253 TMNSLGKTFSLTGWK-IGWAIAPP-HLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLK  330 (413)
T ss_pred             EEecchhhccCcchh-eeeeEeCH-HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999877654 56777764 688888776655555556555444444443    245556667778888999998


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--CHHHHHHHHccC-CcceeecccCC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--SLALSKHVVETT-KYFSITVSFGS  283 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--~~~~~~~~~~~L-~~~~i~v~~G~  283 (339)
                      .+ ++. +.-|                ..+..+++.+.  +.+...+|++.| +..|+.+..|.
T Consensus       331 ~~-g~~-~~~p----------------~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~  376 (413)
T PLN00175        331 EV-GFK-VYPS----------------SGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPS  376 (413)
T ss_pred             HC-CCe-ecCC----------------CeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCch
Confidence            76 343 1111                12334666652  222345777776 45688776654

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.76  E-value=8.8e-17  Score=154.33  Aligned_cols=226  Identities=16%  Similarity=0.131  Sum_probs=147.0

Q ss_pred             chHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      +...+|++.+++++    |    .+++++++++++|+..++ .+++|||+|+++++.|.+....+.              
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~  149 (391)
T PRK08361         70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREE  149 (391)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCc
Confidence            34567777777765    3    246778888899987544 578999999999998876543322              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc---cCCCe
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL---ELGAD  145 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~---~~~~D  145 (339)
                                                             ++|+++|+++|+++|+|++|+...+..    ++   ....+
T Consensus       150 ~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  229 (391)
T PRK08361        150 NEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNT  229 (391)
T ss_pred             cCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCE
Confidence                                                   789999999999999999997543211    11   12346


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh------hHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~------~~~~r~~~~~~~a~~l~~  219 (339)
                      ++++|+||.++.+| .+.|++++++ ++++.+...........+.+...++...|+      .+....++.+++.+.+.+
T Consensus       230 i~~~s~SK~~~~~G-lRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  307 (391)
T PRK08361        230 ILANSFSKTFAMTG-WRLGFVIAPE-QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLK  307 (391)
T ss_pred             EEEecCchhcCCcH-hhhhhhccCH-HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHH
Confidence            89999999998665 4457888764 677777666554444555544443333332      234445556677788888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .|+.+++++ +..|.                .+..+++.+.+ .....+|++.| +..|+.+..|..+.    .      
T Consensus       308 ~L~~~~~~~-~~~p~----------------g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~----~------  360 (391)
T PRK08361        308 RLKEMPHIK-VFEPK----------------GAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFG----K------  360 (391)
T ss_pred             HHHhCCCCe-ecCCC----------------EEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhC----C------
Confidence            998876653 22221                23456666642 22345677666 45688877664321    0      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEecc
Q 019543          298 SIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                 ..++.+||+++.
T Consensus       361 -----------~~~~~iRi~~~~  372 (391)
T PRK08361        361 -----------AGEGYIRISYAT  372 (391)
T ss_pred             -----------CCCCEEEEEecC
Confidence                       124679999996

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.76  E-value=9.4e-17  Score=152.58  Aligned_cols=244  Identities=18%  Similarity=0.169  Sum_probs=154.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCC---------------EEEEcCCC---ccchH-HH---
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGE---------------EIVAGDDL---YGGTD-RL---  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD---------------~Vi~~~~~---y~~~~-~~---  109 (339)
                      ..+.++++|+++++++|++++++++||++|+.+ +.+++++||               +|+++.+.   |.+.. ..   
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~  122 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL  122 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHh
Confidence            347789999999999999999999999999985 556889998               89988743   32110 00   


Q ss_pred             ------------------HH--------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCe
Q 019543          110 ------------------LS--------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGAD  145 (339)
Q Consensus       110 ------------------~~--------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~D  145 (339)
                                        ++                          ++|.++|++||+++++|++|+... ......++|
T Consensus       123 ~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~D  201 (363)
T TIGR01437       123 GGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGAD  201 (363)
T ss_pred             cCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCCC
Confidence                              00                          899999999999999999997322 122345789


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhh----HHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKT----MALRVEKQQDNAQKIAE  219 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~  219 (339)
                      ++++|++|+++|+  . +|+++.++ ++++.++......+..+  .......+..+++.    -.++.+++.++++++.+
T Consensus       202 ~~~~S~~K~l~gp--~-~G~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~  277 (363)
T TIGR01437       202 LVIYSGAKAIEGP--T-SGLVLGKK-KYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE  277 (363)
T ss_pred             EEEEeCCcccCCC--c-eEEEEEcH-HHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence            9999999999865  3 78888754 56665543221111111  01111111112222    23345555567778999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCcce--eecccCCcccceeccccccC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFS--ITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~--i~v~~G~~~s~~~~p~~~~h  296 (339)
                      .|++.++++....+...   .+       .-....++|... ......++.+.|++.+  |.++.        +.     
T Consensus       278 ~L~~i~g~~~~~~~~~~---~~-------~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~--------~~-----  334 (363)
T TIGR01437       278 ALNTLKGVSASIVQDEA---GR-------DIARAEIRFDESELGMTAADVVQALRQGEPAIYTRG--------YK-----  334 (363)
T ss_pred             HHhcCCCeEEEEecCCC---CC-------cCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee--------ee-----
Confidence            99999988655322110   00       001234556542 1123567788886645  33221        11     


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                  ...+.+|+++..-+ ++.++.+.++|+++
T Consensus       335 ------------~~~~~~~l~~~~~~-~~e~~~~~~~l~~~  362 (363)
T TIGR01437       335 ------------ANEGIIEIDPRSVT-GGQLDIIVERIREI  362 (363)
T ss_pred             ------------ecCCeEEEEeecCC-HHHHHHHHHHHHHh
Confidence                        25578999998766 66788999998753

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.76  E-value=7.4e-17  Score=151.44  Aligned_cols=234  Identities=18%  Similarity=0.150  Sum_probs=158.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH------------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD------------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~------------------------  107 (339)
                      ..+..+++++.+++++|.++++++++|++|+..++ .+++|||+|+++++.|....                        
T Consensus        30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d  109 (338)
T cd06502          30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGENGKLT  109 (338)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCCCcCC
Confidence            45789999999999999778999999999987654 47899999999887643210                        


Q ss_pred             -----HHH---------H---------------------HHHHHHHHHcCCEEEEeCCcCCCC---Cc---CcccCCCeE
Q 019543          108 -----RLL---------S---------------------RKIAEMAHAHGALLLVDNSIMSPV---LS---RPLELGADI  146 (339)
Q Consensus       108 -----~~~---------~---------------------~~I~~la~~~g~~livD~a~a~g~---~~---~~~~~~~Di  146 (339)
                           ..+         +                     ++|+++|++||+++++|++|..+.   .+   .....++|+
T Consensus       110 ~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~  189 (338)
T cd06502         110 PEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDS  189 (338)
T ss_pred             HHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCE
Confidence                 011         1                     679999999999999999874221   11   112246799


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC--CCCChHHHHHHHhchhh--HHHHHHHHHHHHHHHHHHHh
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG--SGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~--~~~~~~~a~~~~~~l~~--~~~r~~~~~~~a~~l~~~L~  222 (339)
                      ++.|+||++++++   |++++.+ +++.+.++.....++  ...++..++.+...|+.  ...+.++..++++++.+.|+
T Consensus       190 ~~~s~sK~~~~~~---g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~  265 (338)
T cd06502         190 VSFCLSKGGGAPV---GAVVVGN-RDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALE  265 (338)
T ss_pred             EEEeccccCCCcc---ceEEECC-HHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998653   4445444 578888877654443  23455555555555554  45566777888899999998


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCC---cceeecccCCcccceeccccccCCC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTK---YFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~---~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      .++. .  .+|                +.++++.+.+. +.....++.+.+.   ..|+.++          +.      
T Consensus       266 ~~~~-~--~~~----------------~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~----------~~------  310 (338)
T cd06502         266 ELGG-L--ESE----------------VQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFY----------AW------  310 (338)
T ss_pred             hcCC-C--ccc----------------ccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEE----------ec------
Confidence            8753 1  122                14567777663 3333445554432   2343321          11      


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                 ..+.|||++++.++++.++.+.+++++
T Consensus       311 -----------~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         311 -----------GEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             -----------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence                       126799999999888888888888864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.76  E-value=2.7e-16  Score=149.13  Aligned_cols=233  Identities=18%  Similarity=0.190  Sum_probs=145.3

Q ss_pred             chHHHHHHHHHhHhC-----CCeEEEcCcHHHHHHHHHH-h-cCCCCEEEEcCCCccchHHHHH----------------
Q 019543           55 PTRDALESLLAKLDK-----ADRALCFTSGMAALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g-----~~~~l~~~sG~~A~~~il~-l-l~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ++++++.+.+++.+|     .+++++++++++++..++. + +++||+|+++++.|.+....++                
T Consensus        60 ~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~l~  139 (357)
T TIGR03539        60 ELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADDPTELD  139 (357)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCChhhcC
Confidence            444555555554433     2456666667888876554 5 6999999999999976654322                


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcc---c-------CCCeEEEecccccc
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPL---E-------LGADIVMHSATKFI  155 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~---~-------~~~Di~~~S~sK~l  155 (339)
                                               ++|+++|++||+++|+|++|+.-.+ ..+.   .       ..-.|+++||||.+
T Consensus       140 ~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~  219 (357)
T TIGR03539       140 PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRS  219 (357)
T ss_pred             ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEecccccc
Confidence                                     7899999999999999999963211 1111   0       11248999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEec
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNY  232 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~  232 (339)
                      +.+| .++|+++++ +++++.++..+...+...+......+...|+.   +....+...++.+.+.+.|+.+ ++. +..
T Consensus       220 ~~~G-~R~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~~  295 (357)
T TIGR03539       220 NLAG-YRAGFVAGD-PALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-GFR-IDH  295 (357)
T ss_pred             CCCc-eeEEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-CcC
Confidence            7766 567788865 47888887776555555555544444444432   3333444556677787888765 332 111


Q ss_pred             CCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCC
Q 019543          233 AGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  311 (339)
Q Consensus       233 p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~  311 (339)
                      |                 .++ .+++.++.  ....+.+.|.+.|+.+..|..+.    +                 -.+
T Consensus       296 p-----------------~~~~~~~~~~~~--~~~~~~~~l~~~gV~v~pg~~f~----~-----------------~~~  335 (357)
T TIGR03539       296 S-----------------EAGLYLWATRGE--DAWDTVDRLAELGILVAPGDFYG----P-----------------AGS  335 (357)
T ss_pred             C-----------------CccEEEEEECCC--CHHHHHHHHHhCCEEECCccccC----C-----------------CCC
Confidence            1                 234 45555543  23467777777788877654321    0                 024


Q ss_pred             CeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          312 DLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       312 ~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+|||++.+  ++   .+.++++.
T Consensus       336 ~~iRis~~~~--~~---~i~~~~~~  355 (357)
T TIGR03539       336 QHVRVALTAT--DE---RIAAAVAR  355 (357)
T ss_pred             CeEEEEecCC--HH---HHHHHHHh
Confidence            6899999973  23   45555554

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07682 hypothetical protein; Validated

Probab=99.75  E-value=1.1e-16  Score=152.89  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=149.7

Q ss_pred             chHHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +...+|++.+++++    |    .+ ++++++++++|+..++ .+++|||+|+++++.|+.....++             
T Consensus        57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  136 (378)
T PRK07682         57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTL  136 (378)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCC
Confidence            34556666666655    3    23 4667777799998654 588999999999998875443221             


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c---cc--CC
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P---LE--LG  143 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~---~~--~~  143 (339)
                                                              ++|+++|++||+++|+|++|+...+..   +   +.  ..
T Consensus       137 ~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  216 (378)
T PRK07682        137 ENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRE  216 (378)
T ss_pred             ccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccC
Confidence                                                    889999999999999999997544321   1   11  12


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~  219 (339)
                      ..+++.||||.++.+| .+.|++++++ ++++.+...........+.....++...|+.    +...+++..++.+.+.+
T Consensus       217 ~~i~~~S~SK~~~~~G-lR~G~~~~~~-~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  294 (378)
T PRK07682        217 RTILISGFSKGFAMTG-WRLGFIAAPV-YFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVT  294 (378)
T ss_pred             CEEEEecCcccccChh-hhhhhhhcCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            3589999999998665 3457887764 6888887665544444555544444444432    34445556777888888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .|+++ ++. +..|                ..+..+++.+.. .....+|++.| +..|+.+..|..+.    +      
T Consensus       295 ~L~~~-~~~-~~~p----------------~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~----~------  346 (378)
T PRK07682        295 SFNEI-GLT-CHVP----------------GGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFG----E------  346 (378)
T ss_pred             HHHHC-CCc-cCCC----------------CeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhC----c------
Confidence            88876 332 1112                123344444521 22345677765 46688887664321    1      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                                 -.++.+|||++.+  +.++.++.|.++++
T Consensus       347 -----------~~~~~iRis~~~~~~~l~~~l~~l~~~l~  375 (378)
T PRK07682        347 -----------SGEGFIRCSYATSLEQLQEAMKRMKRFVE  375 (378)
T ss_pred             -----------CCCCeEEEEeCCCHHHHHHHHHHHHHHHh
Confidence                       0247899999973  12333444554444

>PRK07550 hypothetical protein; Provisional

Probab=99.75  E-value=2.7e-16  Score=150.69  Aligned_cols=238  Identities=18%  Similarity=0.152  Sum_probs=146.7

Q ss_pred             HHHHHHHHHhHhCC----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           57 RDALESLLAKLDKA----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      .+++.+.+.+..|.    ++.++++++++|+..++ .+++|||+|+++++.|......++                    
T Consensus        73 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~  152 (386)
T PRK07550         73 REAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPD  152 (386)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCC
Confidence            34444444444342    44555555588887655 478999999999998876543322                    


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--Cc--c-c---C-CCeEEEe
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RP--L-E---L-GADIVMH  149 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~--~-~---~-~~Di~~~  149 (339)
                                                       ++|+++|++||++||+|++|+.....  .+  . .   . .-.+++.
T Consensus       153 ~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~  232 (386)
T PRK07550        153 PAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLY  232 (386)
T ss_pred             HHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEe
Confidence                                             88999999999999999998643221  11  1 1   1 1247889


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH----HHHHHHHHHHHHHHHHHHhCCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~----~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      ||||.++.+| .+.|++++++ ++++.++......+...+.....++...++.+    ....++..++.+.+.+.|+.++
T Consensus       233 S~SK~~g~~G-~RiG~i~~~~-~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  310 (386)
T PRK07550        233 SFSKSYALTG-HRVGAVVASP-ARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARLP  310 (386)
T ss_pred             cchhhccCcc-cceEeeecCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999998666 4577888764 67777776665445555555444444443332    2233445667778888888765


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEV  303 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~  303 (339)
                      ++. + .|                ..+..+++.+.. ...+.++++.| +..|+.+..|..+.    +            
T Consensus       311 ~~~-~-~~----------------~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~----~------------  356 (386)
T PRK07550        311 GWE-L-LA----------------SGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG----P------------  356 (386)
T ss_pred             Cce-e-CC----------------CceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC----C------------
Confidence            432 1 12                134566776643 23456777765 56788887665321    1            


Q ss_pred             HHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          304 RQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       304 ~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                           ..++.+|||++..+ ++.++...+.|++
T Consensus       357 -----~~~~~iRis~~~~~-~~~~~~~~~~l~~  383 (386)
T PRK07550        357 -----GQEGYLRLAFANAD-VAGIGELVERLRA  383 (386)
T ss_pred             -----CCCCEEEEEeecCC-HHHHHHHHHHHHh
Confidence                 02467999999755 3334444444443

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.75  E-value=2.6e-16  Score=149.62  Aligned_cols=233  Identities=18%  Similarity=0.177  Sum_probs=145.6

Q ss_pred             chHHHHHHHHHhHhC-----CCeEEEcCcHHHHHHHHHH-h-cCCCCEEEEcCCCccchHHHHH----------------
Q 019543           55 PTRDALESLLAKLDK-----ADRALCFTSGMAALAAVTH-L-LGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g-----~~~~l~~~sG~~A~~~il~-l-l~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..++++.+.+.+..|     .+++++++++++++..+.. + ++|||+|+++++.|........                
T Consensus        66 ~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~l~  145 (364)
T PRK07865         66 ELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADSLTELG  145 (364)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCChhhCC
Confidence            344555555554434     2345555555788876544 5 6899999999999887643322                


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Cc---cc-------CCCeEEEecccccc
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RP---LE-------LGADIVMHSATKFI  155 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~---~~-------~~~Di~~~S~sK~l  155 (339)
                                               ++|+++|++||++||+||+|+...+. .+   +.       ..-.|+++||||.+
T Consensus       146 ~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  225 (364)
T PRK07865        146 PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQS  225 (364)
T ss_pred             cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhcc
Confidence                                     78999999999999999999743221 11   10       11249999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEec
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNY  232 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~  232 (339)
                      +.+| .++||++++ +++++.++..+...+...+.....++...++.   +...++...++.+.+.+.|+.+ ++. +..
T Consensus       226 ~~~G-lRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~  301 (364)
T PRK07865        226 NLAG-YRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-GFR-VDH  301 (364)
T ss_pred             CCCc-eeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccC
Confidence            8666 567788876 47888887766655666666555544444432   3444555567777788888765 332 111


Q ss_pred             CCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCC
Q 019543          233 AGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  311 (339)
Q Consensus       233 p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~  311 (339)
                      |                 .++ .+++.++.  ....+.+.|...|+.+..|..+.    +                 -.+
T Consensus       302 ~-----------------~~~~~~~~~~~~--~~~~~~~~l~~~gv~v~pg~~f~----~-----------------~~~  341 (364)
T PRK07865        302 S-----------------EAGLYLWATRGE--DCWDTVAWLAERGILVAPGDFYG----P-----------------AGA  341 (364)
T ss_pred             C-----------------CccEEEEEeCCC--CHHHHHHHHHHCCEEEeCccccC----c-----------------CCC
Confidence            1                 234 45555532  23456666777788877654321    1                 024


Q ss_pred             CeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          312 DLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       312 ~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+||+++..  ++   ++.++++.
T Consensus       342 ~~iRi~~~~~--~~---~~~~~~~~  361 (364)
T PRK07865        342 QHVRVALTAT--DE---RIAAAVER  361 (364)
T ss_pred             CEEEEEecCC--HH---HHHHHHHH
Confidence            6899999863  33   45555543

>PRK12414 putative aminotransferase; Provisional

Probab=99.75  E-value=2.9e-16  Score=150.37  Aligned_cols=240  Identities=14%  Similarity=0.083  Sum_probs=149.5

Q ss_pred             CCchHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           53 GNPTRDALESLLAKLDKA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+.++++++.+++++|.     ++++++++|++|+..++ .++.|||+|+++++.|......++               
T Consensus        68 ~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~  147 (384)
T PRK12414         68 IAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPED  147 (384)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccc
Confidence            346677888888888775     35888888899987544 588999999999998866543222               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----ccc-C----CCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PLE-L----GAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~~-~----~~D  145 (339)
                                                           ++|+++|++||+++|+|++|....+..    ++. .    +-.
T Consensus       148 ~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~  227 (384)
T PRK12414        148 FRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERS  227 (384)
T ss_pred             cccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcE
Confidence                                                 889999999999999999997543211    111 1    124


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHh
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~  222 (339)
                      |++.||||.++.+| .+.||+++++ ++++.+...........+.....++...|+.   .....+...++.+.+.+.|+
T Consensus       228 i~~~SfSK~~~~pG-lRiG~~v~~~-~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~  305 (384)
T PRK12414        228 VIVSSFGKSYHVTG-WRVGYCLAPA-ELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELA  305 (384)
T ss_pred             EEEecccccccCcc-ceEEEEecCH-HHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998766 4567887764 6778777766544444444443333333322   22334455677778888888


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHH-ccCCcceeecccCCcccceeccccccCCCC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~-~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .+ +++ + +|.               ..+..+++.+.+  .....+++ +.++..|+.+..|..+..   .        
T Consensus       306 ~~-g~~-~-~~~---------------~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~---~--------  356 (384)
T PRK12414        306 GS-RFE-L-LPS---------------EGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYT---D--------  356 (384)
T ss_pred             hC-CCe-e-cCC---------------CcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcC---C--------
Confidence            76 332 2 221               123345545532  11123444 445667888876653311   0        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                              +...+.+|||++.+  ++   .+.++++.
T Consensus       357 --------~~~~~~iRis~~~~--~~---~~~~~~~r  380 (384)
T PRK12414        357 --------GTDTGLIRLSFSKD--DA---TLVEGARR  380 (384)
T ss_pred             --------CCCCCEEEEEecCC--HH---HHHHHHHH
Confidence                    11246899999963  33   45555543

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.75  E-value=2.1e-16  Score=153.59  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=150.6

Q ss_pred             HHHHHHHHhHhC----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           58 DALESLLAKLDK----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        58 ~~le~~la~~~g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      .+|++.++++++    .+ ++++++++++|+..++ .+++|||+|++++|.|......++                    
T Consensus       124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~~~~  203 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEK  203 (431)
T ss_pred             HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCCHHH
Confidence            457777777654    23 5666666789998655 588999999999999987654433                    


Q ss_pred             -------------------------------HHHHHHHHHc-CCEEEEeCCcCCCCCc---Cccc--CCCeEEEeccccc
Q 019543          112 -------------------------------RKIAEMAHAH-GALLLVDNSIMSPVLS---RPLE--LGADIVMHSATKF  154 (339)
Q Consensus       112 -------------------------------~~I~~la~~~-g~~livD~a~a~g~~~---~~~~--~~~Di~~~S~sK~  154 (339)
                                                     ++|.++|++| +++||+||+|+.....   ..+.  ..--|+++||||.
T Consensus       204 l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~  283 (431)
T PRK15481        204 LERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKA  283 (431)
T ss_pred             HHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccc
Confidence                                           6999999999 9999999999643221   1121  1224899999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ++ +|. +.||+++++ ++.+.+..........++.....++...|+.      +....+...++.+.+.+.|+.+ ++.
T Consensus       284 ~~-~Gl-RiG~~i~~~-~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~  359 (431)
T PRK15481        284 LG-PDL-RLAFVASDS-ATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIA  359 (431)
T ss_pred             cC-CCc-eeEEEeCCH-HHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence            99 664 566888764 6777776554433344566554444443432      3344556667777888888875 332


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                       +..|                ..|..+++.+..  ...+|++.|...|+.+..|..+..   +                 
T Consensus       360 -~~~p----------------~gg~f~~~~l~~--~~~~~~~~l~~~gV~v~pg~~f~~---~-----------------  400 (431)
T PRK15481        360 -IPSP----------------GDGLNLWLPLDT--DSQATALTLAKSGWLVREGEAFGV---S-----------------  400 (431)
T ss_pred             -cccC----------------CCeEEEEEECCC--CHHHHHHHHHHCCcEEecCCcccc---C-----------------
Confidence             1122                146677777753  235677777677888877654311   0                 


Q ss_pred             CCCCeEEEEeccCC---HHHHHHHHHHHH
Q 019543          309 LTEDLVRISVGIED---VNDLISDLDKAL  334 (339)
Q Consensus       309 ~~~~~lRisvg~e~---~~~li~~l~~al  334 (339)
                      -..+.+|||++..+   .++.++.|.+++
T Consensus       401 ~~~~~iRis~~~~~~~~i~~~~~~l~~~~  429 (431)
T PRK15481        401 APSHGLRITLSTLNDAEINRLAADLHQAL  429 (431)
T ss_pred             CCCCeEEEEcCCCChHHHHHHHHHHHHHh
Confidence            02357999999744   334444554444

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.75  E-value=3.9e-16  Score=149.29  Aligned_cols=242  Identities=19%  Similarity=0.166  Sum_probs=152.3

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      ...+|++.+++++|.+  ++++++++++|+..++ .++++||+|+++++.|......+.                     
T Consensus        67 g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d  146 (380)
T PRK06225         67 GFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLT  146 (380)
T ss_pred             chHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCC
Confidence            3678999999998864  6778888899988655 478999999999987764322111                     


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----ccCCCeEEEeccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----LELGADIVMHSATKF  154 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~~~~~Di~~~S~sK~  154 (339)
                                                       ++|+++|++||+++|+|+++........    ......+++.||||+
T Consensus       147 ~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~  226 (380)
T PRK06225        147 PELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKI  226 (380)
T ss_pred             HHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhh
Confidence                                             8899999999999999999742111111    111346888999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHH-HHHHHHHHHHHHHHhCCCCceEE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRV-EKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~-~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      +|.+| ...|++++++ ++++.++.... ...+.+......+...+   ..+.++. +..+++.+.+.+.|+.++++...
T Consensus       227 ~g~~G-~RiG~i~~~~-~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  303 (380)
T PRK06225        227 FGMAG-LRIGAVVATP-DLIEVVKSIVI-NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLP  303 (380)
T ss_pred             cCCcc-ceeEEEecCH-HHHHHHHHHHh-cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence            97555 5567888764 67777765532 22333444333332222   2222222 33345566777888876654221


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      .+|                +.+.++++.+.+ .....+|++.|.+.|+.+..|..+    .+.                .
T Consensus       304 ~~~----------------~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~----~~~----------------~  347 (380)
T PRK06225        304 VYP----------------SHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYT----SKR----------------F  347 (380)
T ss_pred             cCC----------------CCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCccc----CcC----------------C
Confidence            222                145677887643 223467787777778887765321    110                1


Q ss_pred             CCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          310 TEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       310 ~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                      .++.+|+|++.  |+.++.++.|.+++++
T Consensus       348 ~~~~iR~s~~~~~e~l~~~~~~l~~~~~~  376 (380)
T PRK06225        348 GDRYIRVSFSIPREQVEVFCEEFPDVVET  376 (380)
T ss_pred             CCceEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            34689999987  3455556666665543

>PLN02187 rooty/superroot1

Probab=99.74  E-value=6.1e-16  Score=151.45  Aligned_cols=241  Identities=13%  Similarity=0.079  Sum_probs=147.3

Q ss_pred             chHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ....+|++.+|++++        .+++++++++++|+..++ .+++|||+|++++|.|+.......              
T Consensus       108 ~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~  187 (462)
T PLN02187        108 AGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPE  187 (462)
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccc
Confidence            345667888887763        346777777799998655 478999999999999887543222              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-cCC---C
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-ELG---A  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~~~---~  144 (339)
                                                             ++|+++|++||++||+||+|+..++..    ++ ...   -
T Consensus       188 ~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~  267 (462)
T PLN02187        188 KEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP  267 (462)
T ss_pred             cCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCc
Confidence                                                   889999999999999999997543321    11 111   1


Q ss_pred             eEEEeccccccccCCCceEEEEEEc-ChhH---HHHHHHHHHhcCC--CCChHHHHHHHhchh-----hHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVK-GERL---AKELYFLQNAEGS--GLAPFDCWICLRGVK-----TMALRVEKQQDN  213 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~-~~~l---~~~l~~~~~~~~~--~~~~~~a~~~~~~l~-----~~~~r~~~~~~~  213 (339)
                      -|+++||||.++.+|.+ .||++++ ++.+   ++.+...+..++.  ..+.+...++...|+     .+...++...++
T Consensus       268 vi~l~SfSK~f~~pGlR-iG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~  346 (462)
T PLN02187        268 VLTLAGISKGWVVPGWK-IGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHN  346 (462)
T ss_pred             EEEEecchhhcCCccce-eEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            37889999999988865 5677764 3322   2344444444333  234444333333332     245556667778


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHcc-CCcceeecccCCcccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVKSL  287 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~-L~~~~i~v~~G~~~s~  287 (339)
                      .+.+.+.|+.++.+..+..|                ..+..+++.+...     ....+++.. +++.|+.+..|..+. 
T Consensus       347 r~~l~~~L~~~~~~~~~~~P----------------~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg-  409 (462)
T PLN02187        347 VDLVCDRLKDIPCVVCPKKP----------------ESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALG-  409 (462)
T ss_pred             HHHHHHHHhhCCCCcCCCCC----------------CEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccC-
Confidence            88899999887643211122                1234555544311     112344433 366788877664321 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC--HHHHHHHHHHHHh
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALR  335 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~--~~~li~~l~~al~  335 (339)
                                            .++.+||+++...  .++-+++|.+.++
T Consensus       410 ----------------------~~~~iRis~~~~~e~l~~al~rL~~~l~  437 (462)
T PLN02187        410 ----------------------LKNWMRITIGVEAHMLEDALERLKGFCT  437 (462)
T ss_pred             ----------------------CCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                                  1367999999642  2333455555443

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.74  E-value=6.3e-16  Score=148.10  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=144.1

Q ss_pred             HHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           58 DALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .+|++.+++++    |    .+++++++++++|+..++ ++++|||+|+++++.|.+....+.                 
T Consensus        69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  148 (384)
T PRK06348         69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGF  148 (384)
T ss_pred             HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCC
Confidence            45666666654    2    356778888899998644 578999999999998876543322                 


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c---cc--CCCeEE
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P---LE--LGADIV  147 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~---~~--~~~Di~  147 (339)
                                                          ++|+++|++||++||+|++|+...+..   +   +.  ....|+
T Consensus       149 ~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~  228 (384)
T PRK06348        149 QINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTIT  228 (384)
T ss_pred             cCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEE
Confidence                                                889999999999999999997543221   1   11  123588


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHhC
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +.||||.++.+| .+.||+++++ ++.+.++..........++....++...++.    ++...+..+++.+.+.+.|+.
T Consensus       229 ~~SfSK~~~l~G-lRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~  306 (384)
T PRK06348        229 FGSFSKDFAMTG-WRIGYVIAPD-YIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES  306 (384)
T ss_pred             EecchhccCCcc-ccceeeecCH-HHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998666 4567888764 6777777766554555566544444333322    233344556667778888887


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccCCCCC
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      +++++ +..|                 .++ .+++.+.. .....+|++.+ +..|+.+..|..+..             
T Consensus       307 ~~~~~-~~~p-----------------~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-------------  355 (384)
T PRK06348        307 IPNLS-LHPP-----------------KGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE-------------  355 (384)
T ss_pred             CCCce-eccC-----------------CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc-------------
Confidence            66542 2212                 234 55776642 22345677665 456888876654310             


Q ss_pred             HHHHHhCCCCCCeEEEEecc
Q 019543          301 VEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~  320 (339)
                              ..++.+|||++.
T Consensus       356 --------~~~~~iRi~~~~  367 (384)
T PRK06348        356 --------SGEGYIRLACTV  367 (384)
T ss_pred             --------CCCCeEEEEecC
Confidence                    024679999974

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.74  E-value=1.5e-16  Score=150.04  Aligned_cols=234  Identities=17%  Similarity=0.171  Sum_probs=153.9

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..+...+|++.++++++.+  +.++++++++++..+ ..++++||+|+++++.|+.......                  
T Consensus        52 ~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d  131 (346)
T TIGR01141        52 PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLD  131 (346)
T ss_pred             CCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCC
Confidence            3445689999999999853  456666667888654 4578999999999998765432211                  


Q ss_pred             ------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-Ccc---c-CCCeEEEeccccc
Q 019543          112 ------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RPL---E-LGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~~---~-~~~Di~~~S~sK~  154 (339)
                                                    +++.++|+.+  |+++|+|++|+..... .+.   . ...+++++|+||+
T Consensus       132 ~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~  211 (346)
T TIGR01141       132 LEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKA  211 (346)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHh
Confidence                                          7788888777  9999999998732211 111   1 2235888999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                      ++.+| ...|+++++ +++.+.++....  ....++.....+...++   .+....++..++.+++.+.|+.+++++ + 
T Consensus       212 ~g~~G-~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~-  285 (346)
T TIGR01141       212 FGLAG-LRIGYAIAN-AEIIDALNKVRA--PFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLE-V-  285 (346)
T ss_pred             hhchh-hhceeeecC-HHHHHHHHhccC--CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE-E-
Confidence            97665 446788876 467777665432  23344444333333332   244556667788888999998887654 2 


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCC
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  311 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~  311 (339)
                      .|.                .+..++|.+.+  .+.+|.+.|...|+.+..|..+.                     +. +
T Consensus       286 ~~~----------------~g~~~~~~~~~--~~~~~~~~L~~~gI~v~~g~~f~---------------------~~-~  325 (346)
T TIGR01141       286 YPS----------------DANFVLIRFPR--DADALFEALLEKGIIVRDLNSYP---------------------GL-P  325 (346)
T ss_pred             CCC----------------cCCEEEEecCC--CHHHHHHHHHHCCeEEEeCCCcC---------------------CC-C
Confidence            231                35788888864  45677888877788877664211                     11 4


Q ss_pred             CeEEEEeccCCHHHHHHHHHHHHh
Q 019543          312 DLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       312 ~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.+|+|++   .++.++.+.++|+
T Consensus       326 ~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       326 NCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             CeEEEecC---CHHHHHHHHHHhC
Confidence            78999988   3455677777653

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.74  E-value=4.6e-16  Score=148.64  Aligned_cols=253  Identities=15%  Similarity=0.114  Sum_probs=154.8

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc---CCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL---GTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll---~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ...+++++.+++++|++  .+++++||+.++..++ .++   .+||+|++++..|+.....+.                 
T Consensus        42 ~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~  121 (379)
T TIGR03402        42 KAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEE  121 (379)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCC
Confidence            45678889999999975  4667778899987543 332   567899988776654432111                 


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++++|++|+.|... +....++|++++|.+|.+ 
T Consensus       122 g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~-  200 (379)
T TIGR03402       122 GRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLH-  200 (379)
T ss_pred             CcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcC-
Confidence                                              89999999999999999999988542 333568999999999954 


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhC-C
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS-H  224 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~-~  224 (339)
                      |+.+  .|+++.+++..   +....       .....+.+......+..+++    .++...++..++.+++.+.|++ +
T Consensus       201 gp~G--~g~l~v~~~~~---~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  275 (379)
T TIGR03402       201 GPKG--VGALYIRKGTR---FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARI  275 (379)
T ss_pred             CCCc--eEEEEECCCCC---CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4433  46776665321   11100       00111222211111122222    2333344555667778888875 7


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                      ++++... +.  .           ...+++++|.+.+.+ ..++.+.|...||.++.|...+.      ..+.  +....
T Consensus       276 ~~~~~~~-~~--~-----------~~~~~~~~~~~~~~~-~~~~~~~l~~~gI~v~~g~~c~~------~~~~--~~~~~  332 (379)
T TIGR03402       276 PDARLNG-DP--T-----------KRLPNTVNISFEYIE-GEAILLLLDMEGICASSGSACTS------GSLE--PSHVL  332 (379)
T ss_pred             CCEEEeC-CC--c-----------cCCCCEEEEEecCCC-HHHHHHhhccCCEEEEchhhcCC------CCCC--cCHHH
Confidence            7764322 21  0           012357777664332 35677888888999997753221      1111  11223


Q ss_pred             HhCCCC----CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          305 QARGLT----EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       305 ~~~g~~----~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ..+|..    ++.||+|++..++++.|+.+.++|++
T Consensus       333 ~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~  368 (379)
T TIGR03402       333 RAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPP  368 (379)
T ss_pred             HHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345543    47899999998888888888888764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.74  E-value=7.4e-16  Score=145.77  Aligned_cols=208  Identities=18%  Similarity=0.128  Sum_probs=133.1

Q ss_pred             HHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHH-HHhcCCC---CEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLD----K----AD-RALCFTSGMAALAAV-THLLGTG---EEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~i-l~ll~~G---D~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ...|++.+++++    |    .+ ++++++++++|+..+ ..++++|   |+|++++|.|......++            
T Consensus        38 ~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~  117 (350)
T TIGR03537        38 TKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLK  117 (350)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccC
Confidence            345556665553    5    23 455555668888754 4578887   699999998876553322            


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----cc--CCC
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----LE--LGA  144 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~~--~~~  144 (339)
                                                               ++|+++|++||+++|+|++|+.......    ..  ..-
T Consensus       118 ~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  197 (350)
T TIGR03537       118 KEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIEN  197 (350)
T ss_pred             cccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCC
Confidence                                                     8899999999999999999975433221    11  122


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L  221 (339)
                      .|++.|+||.++.+| .+.|+++++ +.+.+.++..+..++...++....++...+   +.+..++++.+++.+.+.+.|
T Consensus       198 ~i~~~s~SK~~g~~G-lRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l  275 (350)
T TIGR03537       198 VLAFHSLSKRSGMTG-YRSGFVAGD-EKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFF  275 (350)
T ss_pred             EEEEeecccccCCcc-ccceeeecC-HHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            488899999998766 456788765 478888887765556555544333332222   233445566677777888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCc
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSV  284 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~  284 (339)
                      +.+ +++ +..|                ..+..+++.+++.....++++.|...|+.+..|..
T Consensus       276 ~~~-g~~-~~~~----------------~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~  320 (350)
T TIGR03537       276 NKV-GLE-YLYP----------------DATFYLWVKVPSGIDAKDYALRLLENGIVVAPGEN  320 (350)
T ss_pred             HHC-CCc-ccCC----------------CeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchh
Confidence            775 332 1111                12345777775433456788888777888776643

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08068 transaminase; Reviewed

Probab=99.74  E-value=5.2e-16  Score=148.88  Aligned_cols=224  Identities=15%  Similarity=0.087  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           56 TRDALESLLAKLD----K----AD-RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ...+|++++++++    |    .+ +.++++++++++..+ ..++++||+|++++|.|......++              
T Consensus        71 g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~  150 (389)
T PRK08068         71 GYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAE  150 (389)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccc
Confidence            3556777777765    4    23 466777778888754 4578999999999998876543222              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--Cc---cc----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RP---LE----LG  143 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~---~~----~~  143 (339)
                                                             ++|+++|++||++||+||+|+...+.  .+   ..    ..
T Consensus       151 ~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~  230 (389)
T PRK08068        151 NNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKD  230 (389)
T ss_pred             cCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccC
Confidence                                                   78999999999999999999642221  11   11    12


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~  219 (339)
                      ..+++.||||.++.+| .+.||++++ +++++.+......+....++.....+...+    +.++..+++..++.+.+.+
T Consensus       231 ~~i~~~S~SK~~g~~G-lRiG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~  308 (389)
T PRK08068        231 VGIELYTLSKTFNMAG-WRVAFAVGN-ESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFIS  308 (389)
T ss_pred             CEEEEecchhccCCcc-ceeEeEecC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            3489999999998766 456788775 478888877765555444433222222222    2344556666677778888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCc-ceeecccCCcccceeccccccCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .|+.+ ++. +. |                ..++ .+++.+.+...+.+|.+.|.. .|+.+..|..+.    +      
T Consensus       309 ~L~~~-g~~-~~-~----------------~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~----~------  359 (389)
T PRK08068        309 ACREI-GWE-VD-A----------------PKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFG----E------  359 (389)
T ss_pred             HHHHC-CCc-cc-C----------------CCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhC----c------
Confidence            88776 332 11 1                1344 467777543345678887754 688877664321    0      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccC
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                                 ..++.+||+++..
T Consensus       360 -----------~~~~~iRi~~~~~  372 (389)
T PRK08068        360 -----------HGEGYVRVGLLTD  372 (389)
T ss_pred             -----------cCCCeEEEEEcCC
Confidence                       0246899999864

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.2e-16  Score=146.76  Aligned_cols=259  Identities=24%  Similarity=0.242  Sum_probs=166.0

Q ss_pred             CCCcccCC--CCchHHHHHH----HHHhHhCCCeEEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------
Q 019543           45 GPYDYTRS--GNPTRDALES----LLAKLDKADRALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------  107 (339)
Q Consensus        45 ~~~~y~r~--~~~~~~~le~----~la~~~g~~~~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------  107 (339)
                      .+|..-|+  +...++++|+    +..++||++.+-+- .||..||.+ .++|++|||.|+-.+...+|..         
T Consensus        56 EGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~s  135 (413)
T COG0112          56 EGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFS  135 (413)
T ss_pred             cCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCcc
Confidence            34555554  5667777775    44579999987765 499999986 5679999999998765443321         


Q ss_pred             ------------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCc-----CCCCCcC
Q 019543          108 ------------------------RLLS--------------------RKIAEMAHAHGALLLVDNSI-----MSPVLSR  138 (339)
Q Consensus       108 ------------------------~~~~--------------------~~I~~la~~~g~~livD~a~-----a~g~~~~  138 (339)
                                              ....                    +++.++|++.|++|++|-+|     +.|.+.+
T Consensus       136 G~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~  215 (413)
T COG0112         136 GKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPN  215 (413)
T ss_pred             ceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCC
Confidence                                    0000                    99999999999999999999     4567788


Q ss_pred             cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHH---HHHH---Hhchh-hHHHHHHHHH
Q 019543          139 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD---CWIC---LRGVK-TMALRVEKQQ  211 (339)
Q Consensus       139 ~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~---a~~~---~~~l~-~~~~r~~~~~  211 (339)
                      |++. +|++++|.+|+|.||   +||+|.++++++.+++.... +.|..-.|+.   |+.+   ...++ .+.+..++..
T Consensus       216 P~~~-AdvVTtTTHKTlrGP---rGG~Il~~~eel~kkin~aV-FPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv  290 (413)
T COG0112         216 PLPH-ADVVTTTTHKTLRGP---RGGIILTNDEELAKKINSAV-FPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVV  290 (413)
T ss_pred             CCCc-cceEeCCcccCCCCC---CceEEEeccHHHHHHhhhhc-CCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9987 999999999999976   68999999867777776532 2233334433   2222   12222 3467778888


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccce--
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLI--  288 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~--  288 (339)
                      +|++.|++.|.+. +++.+.  +              ...++++-+.+.+. -......+.|...+|.++--..  ..  
T Consensus       291 ~NAkaLAe~l~~~-G~~vvs--G--------------gTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~i--P~D~  351 (413)
T COG0112         291 KNAKALAEALKER-GFKVVS--G--------------GTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAI--PFDP  351 (413)
T ss_pred             HHHHHHHHHHHHc-CCeEec--C--------------CccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCC--CCCC
Confidence            9999999999985 444443  2              22456777766421 1122233334455666653210  00  


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ..|..++-        .+.| .+..-|..++.++.+++.+-+.++|+.
T Consensus       352 ~~p~~tSG--------IRiG-tpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         352 ESPFVTSG--------IRIG-TPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             CCCCCCcc--------ceec-cHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            01111110        1122 223445666777888888888888764

>PRK08912 hypothetical protein; Provisional

Probab=99.74  E-value=5.4e-16  Score=148.66  Aligned_cols=225  Identities=16%  Similarity=0.083  Sum_probs=141.7

Q ss_pred             HHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           58 DALESLLAKLD----K----AD-RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g----~~-~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+|++.+++++    |    .+ ++++++++++|+.++ ..+++|||+|+++++.|......++                
T Consensus        66 ~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  145 (387)
T PRK08912         66 PELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHW  145 (387)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccC
Confidence            45566666543    4    23 566777778998754 4578999999999998876543322                


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc----c-CCCeE
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL----E-LGADI  146 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~----~-~~~Di  146 (339)
                                                          ++|+++|++||+++|+|++|+...+..    ++    . ...++
T Consensus       146 ~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i  225 (387)
T PRK08912        146 RLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTV  225 (387)
T ss_pred             cCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceE
Confidence                                                779999999999999999986433211    11    1 13469


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHHh
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      +++|+||.++.+| .+.|++++++ ++++.+.......+...++.....+...+    +.+....++..++.+++.+.|+
T Consensus       226 ~~~S~SK~~g~~G-lRiG~~~~~~-~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~  303 (387)
T PRK08912        226 KIGSAGKIFSLTG-WKVGFVCAAP-PLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLR  303 (387)
T ss_pred             EEeechhhccCcC-ceeEEEecCH-HHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998666 4567888764 67777776655444444443333222222    2234445556677788888888


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HHHHHHHHccC-CcceeecccCCcccceeccccccCCC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      .+ ++. + +|.               ..+..+++.+..   .....+|++.| +..|+.+..|..+... .        
T Consensus       304 ~~-g~~-~-~~~---------------~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~-~--------  356 (387)
T PRK08912        304 RI-GFP-V-LPS---------------QGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEE-D--------  356 (387)
T ss_pred             hC-CCc-c-cCC---------------CcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCC-C--------
Confidence            76 332 1 121               124567777643   12345677775 5678887766432110 0        


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccC
Q 019543          299 IPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                                -..+.+|||++..
T Consensus       357 ----------~~~~~iRl~~~~~  369 (387)
T PRK08912        357 ----------PVTSVVRFCFAKR  369 (387)
T ss_pred             ----------CCCCEEEEEEeCC
Confidence                      0246899999974

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.74  E-value=7.8e-16  Score=148.59  Aligned_cols=237  Identities=12%  Similarity=0.107  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhHh----CC-----C-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           57 RDALESLLAKLD----KA-----D-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g~-----~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ..+|++.+++++    |.     + ++++++++++|+..++ .++++||+|++++|.|......++              
T Consensus        83 ~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~  162 (410)
T PRK06290         83 IQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEE  162 (410)
T ss_pred             cHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCC
Confidence            446666666653    42     3 3555555578887654 578999999999999876543322              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C--cc-c----CCC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R--PL-E----LGA  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~--~~-~----~~~  144 (339)
                                                             ++|+++|++||++||+||+|+...+. .  .. .    ...
T Consensus       163 ~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~  242 (410)
T PRK06290        163 NNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEV  242 (410)
T ss_pred             cCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCcccc
Confidence                                                   78999999999999999999754321 1  11 1    134


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L  221 (339)
                      +|++.||||.++.+| .+.||++++ +++++.+.......+...+.....++...|+   .+....++..++.+.+.+.|
T Consensus       243 ~I~i~SfSK~~g~~G-lRiG~ii~~-~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L  320 (410)
T PRK06290        243 GVEIHSLSKAYNMTG-WRLAFVVGN-ELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKIL  320 (410)
T ss_pred             EEEEeechhhcCCch-hheEeEEeC-HHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999998766 456788876 4677777766544443333333333333332   24445666677788888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-------HHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-------ALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +.+ ++. +..|                ..+..+++.+.+.       ....+|++.|...++.+.         .|.. 
T Consensus       321 ~~~-g~~-~~~p----------------~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~---------~p~~-  372 (410)
T PRK06290        321 NEV-GFK-AEMP----------------GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLIST---------VPWD-  372 (410)
T ss_pred             HhC-CCe-ecCC----------------CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEE---------ECCc-
Confidence            876 332 1111                0234456666432       235678887765543221         1211 


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEec-----cCCHHHHHHHHHHHHhcC
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRTG  337 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg-----~e~~~~li~~l~~al~~~  337 (339)
                                    -..+.+||+++     .|+.+.+++.|.++|..+
T Consensus       373 --------------~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        373 --------------DAGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             --------------cccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence                          01257999996     456677888888888654

>PRK10534 L-threonine aldolase; Provisional

Probab=99.73  E-value=1.5e-16  Score=149.29  Aligned_cols=205  Identities=19%  Similarity=0.201  Sum_probs=138.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCC----ccc--hH------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDL----YGG--TD------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~----y~~--~~------------------  107 (339)
                      .+|...+||+.+++++|.+.++++++|++++.. ++.++.|||+|+++.+.    |..  ..                  
T Consensus        32 ~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (333)
T PRK10534         32 DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTL  111 (333)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCC
Confidence            578999999999999999999999999988864 55678999999986542    211  10                  


Q ss_pred             ------HHH--------H--------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cCc---ccCCCeEE
Q 019543          108 ------RLL--------S--------------------RKIAEMAHAHGALLLVDNSIMSPVL---SRP---LELGADIV  147 (339)
Q Consensus       108 ------~~~--------~--------------------~~I~~la~~~g~~livD~a~a~g~~---~~~---~~~~~Di~  147 (339)
                            ..+        +                    ++|+++|++||++|++||+|..+..   ...   +....|.+
T Consensus       112 d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~  191 (333)
T PRK10534        112 PLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSF  191 (333)
T ss_pred             CHHHHHHhhcccCcCcccceEEEEecCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEE
Confidence                  011        1                    5667899999999999999763211   111   11234766


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC--hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~--~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +.||||.++..   .||+++++ +++++.++.++..++..++  ...++.+...++...+++++..++++++.+.|+++ 
T Consensus       192 ~~s~SK~~~~~---~G~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~-  266 (333)
T PRK10534        192 TICLSKGLGTP---VGSLLVGN-RDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAEQLREA-  266 (333)
T ss_pred             EEEeEcCCCCc---ccceEEcC-HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-
Confidence            77999998842   56677665 5788888877765543333  23344455556654566666767788999999886 


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      ++. + +|                +.+..+.+.+++. ...++.+.|++.|+.++.
T Consensus       267 g~~-~-~~----------------~~~nfv~~~~~~~-~~~~~~~~l~~~gi~v~~  303 (333)
T PRK10534        267 GAD-V-MR----------------QDTNMLFVRVGEE-QAAALGEYMRERNVLINA  303 (333)
T ss_pred             CCc-c-CC----------------CCceEEEEECCch-hHHHHHHHHHHcCeeecC
Confidence            432 1 22                1456777777642 345777788888887653

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.73  E-value=7.4e-16  Score=147.59  Aligned_cols=222  Identities=13%  Similarity=0.055  Sum_probs=138.5

Q ss_pred             HHHHHHHHhHh----CC----Ce-EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           58 DALESLLAKLD----KA----DR-ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g~----~~-~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+|++.+++++    |.    ++ +++++++++|+..++ .+++|||+|++++|.|......++                
T Consensus        72 ~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g  151 (385)
T PRK09276         72 LEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENG  151 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCC
Confidence            45555555554    42    33 444455588887654 478999999999998875443221                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc-c----CCCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPL-E----LGAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~-~----~~~D  145 (339)
                                                           ++|+++|++||++||+|++|....+.    ..+ .    ....
T Consensus       152 ~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~  231 (385)
T PRK09276        152 FLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVG  231 (385)
T ss_pred             CcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCE
Confidence                                                 88999999999999999999743321    111 1    1235


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L  221 (339)
                      |++.||||.+|.+|. +.||++++ +++++.+...+...+...++.....+...++    .++...++.+++.+++.+.|
T Consensus       232 i~~~S~SK~~g~~Gl-RiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  309 (385)
T PRK09276        232 IEFHSLSKTYNMTGW-RIGFAVGN-ADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGL  309 (385)
T ss_pred             EEEecchhhcCCcch-hheeeeCC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999987764 45688776 4688888776654444444433333333332    23444555567778888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      +.. ++. +..|                ..+..+++.+.+.....+|++.| +..|+.+..|..+.    +         
T Consensus       310 ~~~-~~~-~~~~----------------~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~----~---------  358 (385)
T PRK09276        310 RKL-GLE-VEPP----------------KATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFG----E---------  358 (385)
T ss_pred             HhC-CCc-ccCC----------------CcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhC----C---------
Confidence            875 332 1111                12344677775433445677765 35688877664321    0         


Q ss_pred             HHHHHhCCCCCCeEEEEecc
Q 019543          301 VEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~  320 (339)
                              -.++.+|||++.
T Consensus       359 --------~~~~~~Ris~~~  370 (385)
T PRK09276        359 --------YGEGYFRIALTV  370 (385)
T ss_pred             --------CCCCeEEEEeCC
Confidence                    024689999985

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.73  E-value=2.4e-16  Score=148.07  Aligned_cols=238  Identities=14%  Similarity=0.098  Sum_probs=150.0

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..|+..+...+|++.+|+++|.+  .+++++++++++..++.+++||+ |++.+|.|......++               
T Consensus        34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~~~  112 (332)
T PRK06425         34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNLIN  112 (332)
T ss_pred             cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCccc
Confidence            44556678899999999999854  56666666888886666678876 5555888876543332               


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc-----cCCCeEEEeccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL-----ELGADIVMHSAT  152 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~-----~~~~Di~~~S~s  152 (339)
                                                      ++|+++|++||++||+||++.......  ..     ...--|++.|||
T Consensus       113 ~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfS  192 (332)
T PRK06425        113 NNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLT  192 (332)
T ss_pred             CcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecH
Confidence                                            888999999999999999986433211  11     112248889999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh-chhhH-HHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR-GVKTM-ALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~-~l~~~-~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      |.++.+|. +.||+++++ ++++.+.....  .+.++...+..+.. ..+.. ...++..+++.+++.+.|+.+ ++.. 
T Consensus       193 K~~~l~Gl-RiGy~v~~~-~li~~l~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-  266 (332)
T PRK06425        193 KILGIPSL-RIGYIATDD-YNMKISRKITE--PWSVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRA-  266 (332)
T ss_pred             HhcCCchh-hheeeecCH-HHHHHHHHcCC--CCccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE-
Confidence            99997775 456887764 67777765432  22233332222211 12222 334555667777888888876 3321 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                      ..|                +.|..+++.++   ...+|.+.|...|+.+..|..+.    +                 ..
T Consensus       267 ~~~----------------~~g~f~~~~~~---~~~~~~~~l~~~gi~v~~~~~f~----~-----------------~~  306 (332)
T PRK06425        267 AGD----------------PSANFITFMIP---DAHDFYSYLLKNGILVRLLDDYE----C-----------------LG  306 (332)
T ss_pred             CCC----------------CCceEEEEEcC---CHHHHHHHHHHCCeEEEECCCCC----C-----------------CC
Confidence            112                14567788775   24567777766788877654321    0                 12


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          311 EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ++.+|||++..+.   .+.|.+||++
T Consensus       307 ~~~iRis~~~~~~---~~~l~~al~~  329 (332)
T PRK06425        307 EQYIRIAIRRRSF---NIKLVNALRN  329 (332)
T ss_pred             CCEEEEEeCCHHH---HHHHHHHHHH
Confidence            4689999996432   2355555543

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.73  E-value=1.2e-15  Score=146.57  Aligned_cols=244  Identities=18%  Similarity=0.156  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHhHh-------CCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           56 TRDALESLLAKLD-------KADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~-------g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ...+|++.+++++       ..++++++++|++|+..++ .+++|||+|+++++.|......++                
T Consensus        67 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g  146 (397)
T PRK07568         67 GIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEG  146 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccC
Confidence            3567778888775       2456778888899997644 478999999999887754332111                


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C----cccC----CC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R----PLEL----GA  144 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~----~~~~----~~  144 (339)
                                                            ++|+++|+++|+++|+|++++...+. .    ....    .-
T Consensus       147 ~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~  226 (397)
T PRK07568        147 FHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDR  226 (397)
T ss_pred             CCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCC
Confidence                                                  78999999999999999999643221 1    1111    12


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~  220 (339)
                      -+++.|+||.++.+|. +.|+++++++++++.+...... ....+.....++...++    .+....+..+++.+.+.+.
T Consensus       227 ~i~~~S~SK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  304 (397)
T PRK07568        227 VIIIDSVSKRYSACGA-RIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEE  304 (397)
T ss_pred             EEEEecchhhccCCCc-ceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3889999999997764 5677777655676666544322 23444444333333332    2344455567778888889


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC------cceeecccCCcccceeccccc
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK------YFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~------~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      |+.++++. +..|.                .+..+++.+... ...+|++.|.      ..|+.+..|..+..  .+   
T Consensus       305 L~~~~~~~-~~~p~----------------g~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~--~~---  361 (397)
T PRK07568        305 LNKIPGVV-CEKPK----------------GAFYIIAKLPVD-DAEDFAKWLLTDFNYNGETVMVAPASGFYA--TP---  361 (397)
T ss_pred             HhcCCCce-ecCCC----------------cceEEEEecCCC-CHHHHHHHHHhhcccccceEEEeCchHhcC--CC---
Confidence            98876543 22221                233467777432 2345555442      25677666543210  01   


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhcC
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRTG  337 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~~  337 (339)
                                   +...+.+|||++..  +.++.++.|.+++++.
T Consensus       362 -------------~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~  393 (397)
T PRK07568        362 -------------GLGKNEIRIAYVLNEEDLKRAMEILKEALEKY  393 (397)
T ss_pred             -------------CCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence                         11346899999753  3445566666666543

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.73  E-value=7.5e-16  Score=144.60  Aligned_cols=196  Identities=18%  Similarity=0.140  Sum_probs=131.7

Q ss_pred             HHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH--------------------------
Q 019543           58 DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------  111 (339)
Q Consensus        58 ~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------  111 (339)
                      ..|++.+++++|.++.++++++++|+..++ .+.|||+|++++|.|+.....++                          
T Consensus        52 ~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~-~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~v~l  130 (330)
T PRK05664         52 DGLEAAARAYYGAPQLLPVAGSQAAIQALP-RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEAEVEAALDSLDVLVV  130 (330)
T ss_pred             HHHHHHHHHHhCCCCEEECcCHHHHHHHHH-HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechhhHhhhhcCCCEEEE
Confidence            689999999999988888888889987654 46899999999999987765433                          


Q ss_pred             ----------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---cc-CCCeEEEeccccccccCCCceEEEEEEcCh
Q 019543          112 ----------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGE  171 (339)
Q Consensus       112 ----------------~~I~~la~~~g~~livD~a~a~g~~~~~---~~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~  171 (339)
                                      ++|+++|+++|++||+||++........   +. ..--+++.||||.+|.+|. +.||++++ +
T Consensus       131 ~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~Gl-RiG~~v~~-~  208 (330)
T PRK05664        131 VNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGA-RLGFVLAE-P  208 (330)
T ss_pred             eCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCc-ceEEEEeC-H
Confidence                            7788888999999999999964321111   11 1123889999999997764 55788876 4


Q ss_pred             hHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhc
Q 019543          172 RLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  248 (339)
Q Consensus       172 ~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~  248 (339)
                      ++++.+.....  .+.++.....++...|+   .....+++..++.+++.+.|+.+. +.    |.              
T Consensus       209 ~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~----~~--------------  267 (330)
T PRK05664        209 ALLRALAELLG--PWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHG-LT----PA--------------  267 (330)
T ss_pred             HHHHHHHHhcC--CCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCC-Cc----cc--------------
Confidence            67777776542  23345444333333333   234445566677788888888762 21    10              


Q ss_pred             CCCcceEEEeeCCHHHHHHHHccCCcceeecc
Q 019543          249 KGAGSVLSFLTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       249 ~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                      .+.+..+++.+.+   ..+|.+.|...|+.+.
T Consensus       268 ~~~~~f~~~~~~~---~~~~~~~l~~~gi~v~  296 (330)
T PRK05664        268 GGCALFQWVRTED---AAALHEFLARRGILTR  296 (330)
T ss_pred             CCcceEEEEecCC---HHHHHHHHHHCCeEEE
Confidence            1223445555542   3567777777788775

>PRK07337 aminotransferase; Validated

Probab=99.73  E-value=8.1e-16  Score=147.51  Aligned_cols=225  Identities=18%  Similarity=0.154  Sum_probs=144.2

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..+|++.+|+++    |    .+++++++++++|+..+ ..++++||+|+++++.|.+....+.                
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  148 (388)
T PRK07337         69 LAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAER  148 (388)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccC
Confidence            556777777765    3    24677777779998754 4578999999999999887653332                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cccCCCe-EEEe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PLELGAD-IVMH  149 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~~~~~D-i~~~  149 (339)
                                                           ++|+++|++||+++|+|+++..-.+ ..   ....+.+ |++.
T Consensus       149 ~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~  228 (388)
T PRK07337        149 FQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITIN  228 (388)
T ss_pred             CcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEE
Confidence                                                 8899999999999999999863222 11   1122223 6788


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      |+||.++.+|. +.||+++++ ++++.+.......+...+.....++...+     +.+.+..++.+++.+.+.+.|+.+
T Consensus       229 S~SK~~~~~G~-RiG~~~~~~-~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~  306 (388)
T PRK07337        229 SFSKYFNMTGW-RLGWLVVPE-ALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL  306 (388)
T ss_pred             echhhcCCchh-heeeeecCH-HHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999987764 467888764 67787777665544444544433332222     334444556667778888888875


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHcc-CCcceeecccCCcccceeccccccCCC
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                       ++.....|                ..|..+++.+...     ....+|++. ++..|+.+..|..+..   +       
T Consensus       307 -~~~~~~~p----------------~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~---~-------  359 (388)
T PRK07337        307 -GFKVPVMP----------------DGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP---H-------  359 (388)
T ss_pred             -CCccccCC----------------CeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---C-------
Confidence             33211122                1355777777421     234566665 4567888776643211   0       


Q ss_pred             CCHHHHHhCCCCCCeEEEEecc
Q 019543          299 IPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                -.++.+|||++.
T Consensus       360 ----------~~~~~~Ri~~~~  371 (388)
T PRK07337        360 ----------APRDYIRLSYAT  371 (388)
T ss_pred             ----------CCCCEEEEEecC
Confidence                      024789999997

>PRK09082 methionine aminotransferase; Validated

Probab=99.73  E-value=4.8e-16  Score=148.98  Aligned_cols=227  Identities=15%  Similarity=0.078  Sum_probs=146.2

Q ss_pred             chHHHHHHHHHhHhCCC-----eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD-----RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~-----~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +.++++.+.+.+++|..     +.++++++++|+.. +..+++|||+|+++++.|.+....++                 
T Consensus        71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  150 (386)
T PRK09082         71 ALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFR  150 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCccccc
Confidence            45677777777777752     45666667899875 44578999999999998876543332                 


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-cc----CCCeEE
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-LE----LGADIV  147 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~-~~----~~~Di~  147 (339)
                                                         ++|.++|++||+++|+|++|+...+..    . ..    ....++
T Consensus       151 ~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~  230 (386)
T PRK09082        151 VDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFV  230 (386)
T ss_pred             CCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEE
Confidence                                               889999999999999999996543311    1 11    123589


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhC
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      ++||||.++.+| .+.|+++++ +++++.++..........+.....++...++    .+...++...++.+.+.+.|+.
T Consensus       231 ~~S~SK~~~~~G-~RiG~iv~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  308 (386)
T PRK09082        231 VSSFGKTYHVTG-WKVGYCVAP-AALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN  308 (386)
T ss_pred             Eeechhhccchh-hhhhhhhCC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998766 456788876 4788888777654444555544433333332    2333445556778888888886


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccC-CcceeecccCCcccceeccccccCCCCC
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      . ++. + .|.               ..+..+++.+.+  .....+|++.| +..|+.+..|..+..  .+         
T Consensus       309 ~-~~~-~-~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~--~~---------  359 (386)
T PRK09082        309 S-RFK-L-LPC---------------EGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYA--DP---------  359 (386)
T ss_pred             C-CCc-c-cCC---------------CeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCC--CC---------
Confidence            4 332 1 111               123456666642  22345677764 567888776643210  01         


Q ss_pred             HHHHHhCCCCCCeEEEEecc
Q 019543          301 VEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~  320 (339)
                              ...+.+|||++.
T Consensus       360 --------~~~~~~Ri~~~~  371 (386)
T PRK09082        360 --------FPHRLVRLCFAK  371 (386)
T ss_pred             --------CCCCEEEEEecC
Confidence                    134689999997

>PLN02651 cysteine desulfurase

Probab=99.73  E-value=6.4e-16  Score=146.98  Aligned_cols=247  Identities=16%  Similarity=0.108  Sum_probs=149.8

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-H----hcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-H----LLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~----ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ....+++++.+++++|++  ..++++|++.|+..++ .    ..++||+|++++..|+.....+.               
T Consensus        42 ~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~  121 (364)
T PLN02651         42 EDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK  121 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence            456788999999999975  4556666788876432 2    35789999998866654322111               


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~  154 (339)
                                                          ++|.++||+||+++++|++|+.|.. .+..++++|++++|.+|+
T Consensus       122 ~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~  201 (364)
T PLN02651        122 SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI  201 (364)
T ss_pred             CCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh
Confidence                                                9999999999999999999998854 345567899999999997


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHhC
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      + ||.+  .|+++.+++ ....+....       .....+.+....+.+..+|+.    .+...++..+..+++.+.|++
T Consensus       202 ~-gp~G--~g~l~v~~~-~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~  277 (364)
T PLN02651        202 Y-GPKG--VGALYVRRR-PRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA  277 (364)
T ss_pred             C-CCCc--eEEEEEcCC-CCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            4 4432  467777653 323222111       011122222222222223332    233344455667777787775


Q ss_pred             -CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 -HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 -~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                       .++++. ..|.-+.           ....++++|.+.+.. ..++++.|..  |.++.|..      |.....+  +..
T Consensus       278 ~~~~~~i-~~~~~~~-----------~~~~~i~~~~~~~~~-~~~~~~~L~~--i~v~~g~~------c~~~~~~--~~~  334 (364)
T PLN02651        278 KLGGVRV-NGPRDPE-----------KRYPGTLNLSFAYVE-GESLLMGLKE--VAVSSGSA------CTSASLE--PSY  334 (364)
T ss_pred             hCCCEEE-ECCCCcc-----------cCcCCEEEEEeCCCC-HHHHHHHhCC--EEEEchhh------cCCCCCC--cCH
Confidence             577653 3331110           013569999885432 3467777765  88887752      2221111  012


Q ss_pred             HHHhCCCC----CCeEEEEeccCCHHHHH
Q 019543          303 VRQARGLT----EDLVRISVGIEDVNDLI  327 (339)
Q Consensus       303 ~~~~~g~~----~~~lRisvg~e~~~~li  327 (339)
                      ..+.+|+.    .+.||+|++..++++.|
T Consensus       335 ~~~~~g~~~~~~~~~vR~S~~~~~t~~di  363 (364)
T PLN02651        335 VLRALGVPEEMAHGSLRLGVGRFTTEEEV  363 (364)
T ss_pred             HHHHcCCChHHhCceEEEEcCCCCCHHHc
Confidence            23455654    37899999999988754

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.73  E-value=6.8e-16  Score=146.09  Aligned_cols=235  Identities=15%  Similarity=0.167  Sum_probs=149.3

Q ss_pred             CCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           52 SGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +.++...+|++.+|++++.+  ++++++++++++..++ .+++|||+|+++++.|.......+                 
T Consensus        56 y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~  135 (351)
T PRK14807         56 YPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTY  135 (351)
T ss_pred             CCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCC
Confidence            33455789999999999864  4555555577787654 478999999999998875433222                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---cc-CCCeEEEecccccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---LE-LGADIVMHSATKFI  155 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~~-~~~Di~~~S~sK~l  155 (339)
                                                      +++.++|++++.++|+|++|........   .. ..-.|+++||||.+
T Consensus       136 d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~  215 (351)
T PRK14807        136 DVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAF  215 (351)
T ss_pred             CHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhc
Confidence                                            8899999999999999999953221111   11 12358999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--TMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~--~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      +.+|. +.||++++ +++++.++.....  ..++.....++...++  .+.++++...++.+++.+.|+..+++. + +|
T Consensus       216 ~~~Gl-RiG~~v~~-~~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~-~-~~  289 (351)
T PRK14807        216 GLAGL-RVGYAVAN-ENILKYLNLVKSP--YNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIK-V-YP  289 (351)
T ss_pred             ccchh-ceeeeecC-HHHHHHHHHccCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-Cc
Confidence            86664 56788775 4677777654322  3344444444433333  344555566677777888887776653 2 23


Q ss_pred             CCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCe
Q 019543          234 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  313 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~  313 (339)
                      .                .++.+++.+.+.   ..+.+.|...|+.++.+..     .+                + .++.
T Consensus       290 ~----------------~~~~~~i~~~~~---~~~~~~l~~~gV~v~~~~~-----~~----------------~-~~~~  328 (351)
T PRK14807        290 S----------------KTNFILVKFKDA---DYVYQGLLERGILVRDFSK-----VE----------------G-LEGA  328 (351)
T ss_pred             C----------------CccEEEEEcCCH---HHHHHHHHHCCEEEEECCC-----CC----------------C-CCCe
Confidence            1                356677777643   4566666666777652210     00                0 2367


Q ss_pred             EEEEeccCCHHHHHHHHHHHHhc
Q 019543          314 VRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       314 lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|||++..+.   .+.|.++|++
T Consensus       329 iRis~~~~~~---~~~l~~~l~~  348 (351)
T PRK14807        329 LRITVSSCEA---NDYLINGLKE  348 (351)
T ss_pred             EEEEcCCHHH---HHHHHHHHHH
Confidence            9999996433   2355555554

>PRK07777 aminotransferase; Validated

Probab=99.73  E-value=1.3e-15  Score=146.06  Aligned_cols=226  Identities=17%  Similarity=0.081  Sum_probs=140.5

Q ss_pred             HHHHHHHHHhH----hCC----C-eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKL----DKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~----~g~----~-~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.++++    +|.    + +++++++|++|+.+ +..++++||+|+++.+.|++....+.               
T Consensus        63 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~  142 (387)
T PRK07777         63 IPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDG  142 (387)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCcc
Confidence            44566666554    553    2 47777777999975 45578999999999988865432221               


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----ccc-----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PLE-----LG  143 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~~-----~~  143 (339)
                                                             ++|+++|++||+++|+|++|+...+..    ++.     .+
T Consensus       143 ~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  222 (387)
T PRK07777        143 RGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRE  222 (387)
T ss_pred             CCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcC
Confidence                                                   789999999999999999996433211    111     23


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~  219 (339)
                      .++++.||||.++.+|. +.|++++++ ++++.+.......+...+.....++...+    +.+....+...++.+.+.+
T Consensus       223 ~~i~~~S~SK~~g~~Gl-RiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  300 (387)
T PRK07777        223 RTVTISSAAKTFNVTGW-KIGWACGPA-PLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAA  300 (387)
T ss_pred             cEEEEeechhhccCcCc-eeEEEecCH-HHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence            57999999999987664 456777764 67777776654333333322222222222    2234445566778888888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccC-CcceeecccCCcccceeccccccC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      .|+.+ +++ + +|.               ..+..+++.+.+  .....+|++.| +..|+.+..|..+... .+     
T Consensus       301 ~L~~~-~~~-~-~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~-~~-----  356 (387)
T PRK07777        301 GLAEA-GFE-V-HDS---------------AGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDP-AD-----  356 (387)
T ss_pred             HHHhC-CCC-c-cCC---------------CcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCC-Cc-----
Confidence            88875 332 1 121               123456666531  22356788888 4578888877543210 00     


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEecc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                  -.++.+|||++.
T Consensus       357 ------------~~~~~~Ri~~~~  368 (387)
T PRK07777        357 ------------AWNHLVRFAFCK  368 (387)
T ss_pred             ------------CCCCeEEEEecC
Confidence                        024689999996

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.73  E-value=2e-15  Score=146.59  Aligned_cols=225  Identities=16%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...+|++.++++++        .+++++++++++|+..++ .+++|||+|++++|.|........               
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~  174 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPER  174 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCccc
Confidence            45677788887764        256888888899998655 478999999999998876432111               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc---c-CCCe
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL---E-LGAD  145 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~---~-~~~D  145 (339)
                                                            ++|+++|++||++||+|++|+...+..    ++   . ...-
T Consensus       175 ~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~v  254 (430)
T PLN00145        175 GWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPV  254 (430)
T ss_pred             CCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcE
Confidence                                                  789999999999999999997543321    11   1 1124


Q ss_pred             EEEeccccccccCCCceEEEEEE-cChhHHHH---HHHHHHh--cCCCCChHHHHHHHhchh-----hHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAV-KGERLAKE---LYFLQNA--EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNA  214 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~-~~~~l~~~---l~~~~~~--~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a  214 (339)
                      |+++||||.++.+|.++ ||+++ .++.+.+.   +......  .+...+.+..+++...|+     .+...+++.+++.
T Consensus       255 i~~~S~SK~~~~pG~Rl-G~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~  333 (430)
T PLN00145        255 LTLGSISKRWVVPGWRL-GWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETA  333 (430)
T ss_pred             EEEeccccccCCCCeeE-EEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88999999999888665 56665 33333332   1222222  222333444333333332     2455666777888


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-----HHHHHHHHccC-CcceeecccCCcccce
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKHVVETT-KYFSITVSFGSVKSLI  288 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-----~~~~~~~~~~L-~~~~i~v~~G~~~s~~  288 (339)
                      +.+.+.|+.++++..+..|.                .+..+++.++.     .....+|+..| ++.++.+..|..+   
T Consensus       334 ~~~~~~L~~~~g~~~~~~P~----------------ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~f---  394 (430)
T PLN00145        334 DICYEKIKEIKCITCPHKPE----------------GSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSAL---  394 (430)
T ss_pred             HHHHHHHhcCCCCCCCcCCC----------------eeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCcccc---
Confidence            88889998877654333331                23445555532     11234566444 5567776655421   


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEecc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                         | .++.+|||++.
T Consensus       395 -------------------g-~~~~lRis~~~  406 (430)
T PLN00145        395 -------------------G-MKNWLRITFAI  406 (430)
T ss_pred             -------------------C-CCCeEEEEeCC
Confidence                               1 23689999996

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.72  E-value=1.2e-15  Score=146.62  Aligned_cols=230  Identities=13%  Similarity=0.083  Sum_probs=140.2

Q ss_pred             HHHHHHHHhHh----C----CCe-EEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           58 DALESLLAKLD----K----ADR-ALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g----~~~-~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+|++.+++++    |    .++ +++++++++|+..+ ..+++|||+|++++|.|++....+.                
T Consensus        76 ~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~  155 (394)
T PRK05942         76 ASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPEND  155 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccC
Confidence            45666666554    4    233 55666668999754 4588999999999999876543221                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Cc---cc--CCCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RP---LE--LGAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~---~~--~~~D  145 (339)
                                                           ++|+++|++||++||+|++|+.....    ..   +.  ....
T Consensus       156 ~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T PRK05942        156 WLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIG  235 (394)
T ss_pred             CccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccE
Confidence                                                 78999999999999999998643321    11   11  1235


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---h-HHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---T-MALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~-~~~r~~~~~~~a~~l~~~L  221 (339)
                      |+++||||.++.+| .+.|++++++ ++++.++......+...+.....++...++   . +...+++..++.+.+.+.|
T Consensus       236 i~~~SfSK~~~~~G-lRiG~i~~~~-~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  313 (394)
T PRK05942        236 VEFHTLSKTYNMAG-WRVGFVVGNR-HIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL  313 (394)
T ss_pred             EEEecchhccCChh-hheeeeecCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999998666 4567887764 788888876654444445443333333332   2 2334455566677777888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHcc-CCcceeecccCCcccceeccccccCCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      +.. ++. +.-|                 .++ .+++.+.......+++.. ++..|+.+..|..+.    +        
T Consensus       314 ~~~-~~~-~~~~-----------------~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~----~--------  362 (394)
T PRK05942        314 GEL-GWN-IPPT-----------------KATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFG----E--------  362 (394)
T ss_pred             HHC-CCe-ecCC-----------------CeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhC----c--------
Confidence            765 332 1111                 244 567776432223345543 455688776664321    0        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHH
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDL  330 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l  330 (339)
                               ..++.+|+|++. +.+.+.+.+
T Consensus       363 ---------~~~~~iRis~~~-~~~~l~~~l  383 (394)
T PRK05942        363 ---------GGEGYVRISLIA-DCDRLGEAL  383 (394)
T ss_pred             ---------CCCCeEEEEecC-CHHHHHHHH
Confidence                     024689999984 444443333

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.72  E-value=7.4e-16  Score=144.64  Aligned_cols=238  Identities=18%  Similarity=0.171  Sum_probs=156.8

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCC-eEEEcCcH-HHHHHHHHHhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKAD-RALCFTSG-MAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~-~~l~~~sG-~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      .+.++.++...+|++.+++++|.+ +.+++++| ++++.++..++.+| .|+++++.|......+.              
T Consensus        40 ~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~d~~~  118 (330)
T TIGR01140        40 AWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLLAPG-RVLVLAPTYSEYARAWRAAGHEVVELPDLDR  118 (330)
T ss_pred             HHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeCCHHH
Confidence            355555666799999999999864 45555555 67777666667888 58888888876554332              


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-c----CCCeEEEecccccccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-E----LGADIVMHSATKFIAG  157 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~----~~~Di~~~S~sK~l~g  157 (339)
                                                   ++|+++|++||++||+|++|........+ .    ...+|+++|+||+++.
T Consensus       119 l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~  198 (330)
T TIGR01140       119 LPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGL  198 (330)
T ss_pred             HHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcC
Confidence                                         78899999999999999999644332111 1    2346999999999997


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecCC
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  234 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~  234 (339)
                      +| .+.|++++++ ++.+.+..+..  ....+.....++...++.   .....++..++.+.+.+.|+.++.++.  .| 
T Consensus       199 ~G-~R~G~i~~~~-~~~~~l~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~-  271 (330)
T TIGR01140       199 AG-LRLGFVVAHP-ALLARLREALG--PWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEV--VG-  271 (330)
T ss_pred             ch-hhhhheeCCH-HHHHHHHhcCC--CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceE--CC-
Confidence            66 4457887764 57777665432  234455544444444432   234456667788888899988765431  22 


Q ss_pred             CCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          235 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                                     +.+..+++.+.+   ..+|++.|...|+.+..|..+.                     +...+.+
T Consensus       272 ---------------~~~~f~~~~~~~---~~~l~~~l~~~gi~v~pg~~f~---------------------~~~~~~i  312 (330)
T TIGR01140       272 ---------------GTALFLLVRTPD---AAALHEALARRGILIRDFDNFP---------------------GLDPRYL  312 (330)
T ss_pred             ---------------CCCeEEEEEcCC---HHHHHHHHHHCCEEEEECCCCC---------------------CCCCCEE
Confidence                           135566776654   3467777777788777665321                     0134689


Q ss_pred             EEEeccCCHHHHHHHHHHHHh
Q 019543          315 RISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~  335 (339)
                      |++++..+. +  +.|.++|+
T Consensus       313 Ri~~~~~~~-~--~~~~~~l~  330 (330)
T TIGR01140       313 RFALPTDEE-N--DRLEEALA  330 (330)
T ss_pred             EEEecCHHH-H--HHHHHhhC
Confidence            999997552 2  57777664

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.72  E-value=1.1e-15  Score=144.63  Aligned_cols=204  Identities=13%  Similarity=0.081  Sum_probs=135.7

Q ss_pred             chHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      +...+|++.+|++++.  +++++++++++|+..++ .+++|||+|++++|.|.......+                    
T Consensus        60 ~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~  139 (353)
T PRK05387         60 PNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVE  139 (353)
T ss_pred             CcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHH
Confidence            3457999999999975  45777777789998654 578999999999998865443222                    


Q ss_pred             ------------------------HHHHHHHHHc-CCEEEEeCCcCCCCCcCc--c--cCCCeEEEeccccccccCCCce
Q 019543          112 ------------------------RKIAEMAHAH-GALLLVDNSIMSPVLSRP--L--ELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 ------------------------~~I~~la~~~-g~~livD~a~a~g~~~~~--~--~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                              +++.++++++ |+++|+||+|........  +  .....++++||||.++.+|. +
T Consensus       140 ~l~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R  218 (353)
T PRK05387        140 DYLRPNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGL-R  218 (353)
T ss_pred             HHHhcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhh-h
Confidence                                    7888888776 999999999853211111  1  12336999999999986664 4


Q ss_pred             EEEEEEcChhHHHHHHHHHHhc-CCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          163 AGVLAVKGERLAKELYFLQNAE-GSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~~~-~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                      .|+++++ +++.+.++.....+ ...++.....++...++   .+++..++..++.+++.+.|+.+ ++. + +|.    
T Consensus       219 ~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~----  290 (353)
T PRK05387        219 VGFAIGH-PELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFE-V-LPS----  290 (353)
T ss_pred             ceeeecC-HHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CCC----
Confidence            6788775 47878877665433 23455544443333332   24445566667788888888876 442 2 231    


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecc
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                                  .+.++++.+.+ ....+|.+.|...|+.++
T Consensus       291 ------------~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~  319 (353)
T PRK05387        291 ------------KANFVFARHPS-HDAAELAAKLRERGIIVR  319 (353)
T ss_pred             ------------cCcEEEEECCC-CCHHHHHHHHHHCCEEEE
Confidence                        35577777653 234577777777787764

>PRK02948 cysteine desulfurase; Provisional

Probab=99.72  E-value=1.5e-15  Score=145.16  Aligned_cols=256  Identities=16%  Similarity=0.150  Sum_probs=155.3

Q ss_pred             chHHHHHHHHHhHhCCC-eEEEc-CcHHHHHHHHH-Hhc----CCCCEEEEcCCCccchHHHH---H-------------
Q 019543           55 PTRDALESLLAKLDKAD-RALCF-TSGMAALAAVT-HLL----GTGEEIVAGDDLYGGTDRLL---S-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~-~~l~~-~sG~~A~~~il-~ll----~~GD~Vi~~~~~y~~~~~~~---~-------------  111 (339)
                      ...+++++.+|+++|.+ +.+++ +++++++..++ .++    ++||+|++++..|+......   +             
T Consensus        43 ~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~  122 (381)
T PRK02948         43 SLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK  122 (381)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC
Confidence            46789999999999854 45554 55588886533 343    67999999875554332111   1             


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccc
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  155 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l  155 (339)
                                                         ++|.++|+++|+++++|++|+.|... +...+++|+++.|++|++
T Consensus       123 ~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~  202 (381)
T PRK02948        123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIY  202 (381)
T ss_pred             CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcC
Confidence                                               89999999999999999999877542 233568899999999988


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHH----HHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYF----LQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~----~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      |.+|   .|+++.+++.....+..    ......+..+....+.+..++    +.++...++..++.+++.+.|++++ +
T Consensus       203 gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~  278 (381)
T PRK02948        203 GPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP-L  278 (381)
T ss_pred             CCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence            7544   46666665311111110    000111223332222222222    3445666777788888989898774 2


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc-eeccccccCCCCCHHHHHh
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL-ISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~-~~~p~~~~h~~~~~~~~~~  306 (339)
                      .... .+ ..+          .-...+++|.+.+.. ..++...|...||.++.|...+. +..|.         .....
T Consensus       279 ~v~~-~~-~~~----------~~~~~i~~~~~~~~~-~~~~~~~l~~~gI~v~~g~~c~~~~~~p~---------~~~~~  336 (381)
T PRK02948        279 PIEV-EG-HST----------SCLPHIIGVTIKGIE-GQYTMLECNRRGIAISTGSACQVGKQEPS---------KTMLA  336 (381)
T ss_pred             CEEE-eC-CCc----------cCcCCEEEEEeCCCC-HHHHHHhcccCCEEEEchHhcCCCCCCCC---------HHHHH
Confidence            2111 11 000          012457777765422 34566678788999987653211 11121         11223


Q ss_pred             CCC----CCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          307 RGL----TEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       307 ~g~----~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|.    .++.||||++..++++.++.+.++|++
T Consensus       337 ~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~  370 (381)
T PRK02948        337 IGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALET  370 (381)
T ss_pred             cCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            332    247899999999998888888888864

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.72  E-value=3.2e-16  Score=149.03  Aligned_cols=207  Identities=12%  Similarity=0.102  Sum_probs=133.7

Q ss_pred             CchHHHHHHHHHhHhCCC-eEEEcCcH-HHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKAD-RALCFTSG-MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~-~~l~~~sG-~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+...+|++.+|++++.+ +.+++++| ++++..++ .++++||+|+++++.|........                   
T Consensus        66 ~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (367)
T PRK02731         66 DGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAKDYGHDLD  145 (367)
T ss_pred             CCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecccCCCCCHH
Confidence            344578999999999864 34555555 66676544 478999999999998865432211                   


Q ss_pred             ----------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCcC----cc---cC-CCeEEEecccc
Q 019543          112 ----------------------------RKIAEMAHAH--GALLLVDNSIMSPVLSR----PL---EL-GADIVMHSATK  153 (339)
Q Consensus       112 ----------------------------~~I~~la~~~--g~~livD~a~a~g~~~~----~~---~~-~~Di~~~S~sK  153 (339)
                                                  ++|.++++.+  |+++|+|++|.......    .+   .. .-.++++|+||
T Consensus       146 ~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  225 (367)
T PRK02731        146 AMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSK  225 (367)
T ss_pred             HHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehH
Confidence                                        7788888775  99999999986443211    11   11 22488899999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      .++.+| ...||+++++ ++.+.+......  ...+......+...++.   ++...+..+++.+.+.+.|+.. ++.. 
T Consensus       226 ~~g~~G-~RiG~l~~~~-~~~~~l~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-  299 (367)
T PRK02731        226 AYGLAG-LRVGYGIAPP-EIIDALNRVRQP--FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEY-  299 (367)
T ss_pred             hhcCcc-cceeeeeCCH-HHHHHHHHccCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc-
Confidence            998655 4567888764 677777655432  23344444444443332   3444445566677788888776 3321 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                       +|                +.++++++.+++...+.+|++.|.+.|+.++.|.
T Consensus       300 -~~----------------~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~  335 (367)
T PRK02731        300 -IP----------------SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVA  335 (367)
T ss_pred             -CC----------------CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCC
Confidence             12                1467889988544456678888877888877543

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.72  E-value=7.2e-16  Score=148.49  Aligned_cols=237  Identities=17%  Similarity=0.182  Sum_probs=157.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc----------CCC-CEEEEcCCCccchH--------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------GTG-EEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll----------~~G-D~Vi~~~~~y~~~~--------------  107 (339)
                      .++.+.+||++|+++.+.+.+++++||++|+.+++.++          ++| ++|++.+..|+|..              
T Consensus        81 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~  160 (401)
T PRK00854         81 RNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARG  160 (401)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence            45778899999999999999999999999998554422          123 67887776666531              


Q ss_pred             -----------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcC--
Q 019543          108 -----------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSR--  138 (339)
Q Consensus       108 -----------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~--  138 (339)
                                       ..++                             ++|.++|++||+++|+||+|+ .|..+.  
T Consensus       161 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~  240 (401)
T PRK00854        161 GFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL  240 (401)
T ss_pred             cCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh
Confidence                             0000                             889999999999999999996 332221  


Q ss_pred             ---cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHH
Q 019543          139 ---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDN  213 (339)
Q Consensus       139 ---~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~  213 (339)
                         ......|+++.  +|++++.. ..+|++++++ ++.+.++..........+|..++++...|+.++.  ..++.+++
T Consensus       241 ~~~~~g~~~D~~~~--~K~l~gg~-~~ig~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~  316 (401)
T PRK00854        241 AEEHEGIEADVTLI--GKALSGGF-YPVSAVLSNS-EVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEM  316 (401)
T ss_pred             HHhhcCCCCCEEEe--cccccCCc-cCeEEEEEcH-HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence               11234588775  69998643 3467888775 5666554322222334578888878877877654  56667777


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      .+++.+.|+.+... .+..               .++.|.++.|.+ ++.....+|++.|...|+.++          + 
T Consensus       317 ~~~l~~~L~~~~~~-~~~~---------------~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~----------~-  369 (401)
T PRK00854        317 GAYFLEGLRSIRSN-IVRE---------------VRGRGLMLAVELEPEAGGARQYCEALKERGLLAK----------D-  369 (401)
T ss_pred             HHHHHHHHHhhccC-ceEE---------------EeccceEEEEEEecCchhHHHHHHHHHHCCeEEe----------c-
Confidence            88888888765321 0100               134678888876 443446778888877676543          1 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                      ...+.||+++.+..+++.|+.+.++|++
T Consensus       370 ----------------~~~~~lR~~p~~~~t~e~i~~~i~~l~~  397 (401)
T PRK00854        370 ----------------THDHTIRLAPPLVITREQVDWALEQIAK  397 (401)
T ss_pred             ----------------CCCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence                            0236899998777766666666666653

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.72  E-value=2.9e-15  Score=144.40  Aligned_cols=225  Identities=16%  Similarity=0.078  Sum_probs=143.2

Q ss_pred             chHHHHHHHHHhHhCC--------CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLDKA--------DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~--------~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ....++++.++++++.        +++++++++++|+..++ .+.++||+|+++++.|........              
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~  152 (403)
T TIGR01265        73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPE  152 (403)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcc
Confidence            4456788888888763        46778888899998654 477999999999998875432221              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---c-cCC---C
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---L-ELG---A  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~-~~~---~  144 (339)
                                                             ++|+++|+++|+++|+|++|+...+.. +   + ...   -
T Consensus       153 ~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  232 (403)
T TIGR01265       153 KDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVP  232 (403)
T ss_pred             cCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCc
Confidence                                                   889999999999999999997543221 1   1 111   1


Q ss_pred             eEEEeccccccccCCCceEEEEEEcC-hh-----HHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKG-ER-----LAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDN  213 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~-~~-----l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~  213 (339)
                      -|+++||||.++.+|.+ .||+++++ +.     +.+.+..... .....+.+....+...++     .+...+++..++
T Consensus       233 vi~~~S~SK~~~~pGlR-iG~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  310 (403)
T TIGR01265       233 VLSLGGISKRWVVPGWR-LGWIIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENTPQEFFDGKISVLKSN  310 (403)
T ss_pred             EEEEeecccccCCCcce-EEEEEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            37889999999887754 56766642 22     2223333222 123344444443333332     245556667778


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHccC-CcceeecccCCcccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYFSITVSFGSVKSL  287 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~L-~~~~i~v~~G~~~s~  287 (339)
                      .+.+.+.|+.++++. +..|.                .|..+++.+...     ....++++.+ +..|+.+..|..+. 
T Consensus       311 ~~~l~~~L~~~~~~~-~~~p~----------------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~-  372 (403)
T TIGR01265       311 AELCYEELKDIPGLV-CPKPE----------------GAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFG-  372 (403)
T ss_pred             HHHHHHHHhcCCCce-ecCCC----------------ceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccC-
Confidence            888999998876653 22231                456777776422     1345676664 56788877664321 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                                            .++.+|||++.+
T Consensus       373 ----------------------~~~~iRis~~~~  384 (403)
T TIGR01265       373 ----------------------LPNWVRITITVP  384 (403)
T ss_pred             ----------------------CCCeEEEEecCC
Confidence                                  136799999964

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.72  E-value=1.2e-15  Score=147.03  Aligned_cols=252  Identities=16%  Similarity=0.108  Sum_probs=150.9

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hh----cCCCCEEEEcCCCccchHHHH---H-------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HL----LGTGEEIVAGDDLYGGTDRLL---S-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~l----l~~GD~Vi~~~~~y~~~~~~~---~-------------  111 (339)
                      +..+++++.+++++|++  .+++++||+.++..++ .+    .++||+|++++..|+.....+   .             
T Consensus        47 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~  126 (402)
T TIGR02006        47 EAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS  126 (402)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC
Confidence            46788999999999975  5666667788887543 22    368999999988776543211   1             


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccc
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  155 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l  155 (339)
                                                         ++|.++|+++|+++++|++|+.|... +....++|++++|++|.+
T Consensus       127 ~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~  206 (402)
T TIGR02006       127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIY  206 (402)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhc
Confidence                                               99999999999999999999988653 333568999999999987


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      |++|   .|+++.+++.. ..+....       +....+.+......+..+++    .++.+.++.++.++++.+.|+.+
T Consensus       207 gp~G---~G~l~~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (402)
T TIGR02006       207 GPKG---IGALYVRRKPR-VRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI  282 (402)
T ss_pred             CCCc---eEEEEEccCCC-CCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            6433   34555554222 2221110       11112222222111112222    23444556667788888888888


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc-eeccccccCCCCCHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL-ISMPCFMSHASIPVEV  303 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~-~~~p~~~~h~~~~~~~  303 (339)
                      +++.... +. +. .         .....+++|...+.   ..+...|+  ++.++.|...+. ...|         ...
T Consensus       283 ~~v~~~~-~~-~~-~---------~p~~~~v~f~~~~~---~~~~~~l~--~i~v~~G~~c~~~~~~~---------~~~  336 (402)
T TIGR02006       283 EEVYLNG-DL-EH-R---------VPGNLNVSFNYVEG---ESLIMALK--DLAVSSGSACTSASLEP---------SYV  336 (402)
T ss_pred             CCEEEeC-Cc-cc-c---------CCCeEEEEEeCcCH---HHHHHhcC--CEEEechhhcCCCCCCc---------cHH
Confidence            8764322 11 00 0         00112455652222   23444554  666666642111 0111         112


Q ss_pred             HHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          304 RQARGLT----EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       304 ~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...+|+.    .+.||+|++..++++.|+.+.++|++
T Consensus       337 l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~  373 (402)
T TIGR02006       337 LRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKS  373 (402)
T ss_pred             HHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            3455654    47899999999888888888888764

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.72  E-value=1.3e-15  Score=144.36  Aligned_cols=231  Identities=17%  Similarity=0.169  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHH-HHHHHH-h-cCCCCEEEEcCCCccchHHHHH-------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAA-LAAVTH-L-LGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A-~~~il~-l-l~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ....|++.++++++        .+..+++++|+.+ +..+.. + .++||.|++++|.|+.....++             
T Consensus        45 g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~  124 (363)
T PF00155_consen   45 GYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDS  124 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEE
T ss_pred             hhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeeccccc
Confidence            47899999999988        4546777777655 445554 5 6799999999999987765443             


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----c
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-----L  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-----~  140 (339)
                                                                    ++|+++|++||++||+|++|+.......     .
T Consensus       125 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  204 (363)
T PF00155_consen  125 ENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIR  204 (363)
T ss_dssp             TTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHH
T ss_pred             cccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCccc
Confidence                                                          7777889999999999999987655421     1


Q ss_pred             ---cCCC-eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-------hhHHHHHHH
Q 019543          141 ---ELGA-DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-------KTMALRVEK  209 (339)
Q Consensus       141 ---~~~~-Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-------~~~~~r~~~  209 (339)
                         ..+. .+++.|+||.+|.+|. +.|+++++ +.+.+.++.+......  +......+...+       +.+.+++++
T Consensus       205 ~~~~~~~~vi~~~S~SK~~g~~Gl-RvG~i~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~  280 (363)
T PF00155_consen  205 SLLDEDDNVIVVGSLSKSFGLPGL-RVGYIVAP-PELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRER  280 (363)
T ss_dssp             GHHTTTSTEEEEEESTTTTTSGGG-TEEEEEEE-HHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeeeecccccccccc-ccccccch-hhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhh
Confidence               1222 4899999999987664 45788775 5788888877654433  433333222222       145667777


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccce
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLI  288 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~  288 (339)
                      +.++.+++.+.|++. ++.... |                 .++++.+...+..+..+|.+.|.+. |+.+..|..+.  
T Consensus       281 l~~~~~~l~~~L~~~-~~~~~~-~-----------------~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~--  339 (363)
T PF00155_consen  281 LRENRDLLREALEEI-GITVLP-P-----------------EAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFG--  339 (363)
T ss_dssp             HHHHHHHHHHHHHHT-TSEEEH-H-----------------SBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGT--
T ss_pred             HHHHHHHHHHHHHHh-hhheee-c-----------------cCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCC--
Confidence            888899999999876 443221 1                 2455555433333566788887665 88776554211  


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHH
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  333 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~a  333 (339)
                                          . ++.+|+++ ....++.++.+.++
T Consensus       340 --------------------~-~~~iRi~~-a~~~~e~~~~~~~~  362 (363)
T PF00155_consen  340 --------------------V-PGYIRISL-ASHSEEDLEEALER  362 (363)
T ss_dssp             --------------------S-TTEEEEEG-GCSCHHHHHHHHHH
T ss_pred             --------------------C-CCEEEEEe-ccCCHHHHHHHHhh
Confidence                                2 46899999 55555544554444

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7.7e-18  Score=156.10  Aligned_cols=241  Identities=20%  Similarity=0.209  Sum_probs=174.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccc----------h------------HHH
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGG----------T------------DRL  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~----------~------------~~~  109 (339)
                      ....++++|+..|++.|.+++++|+.|+++|.+. -.++.||..|+.+......          +            .++
T Consensus       180 ~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHNdm~~LEr~  259 (519)
T KOG1357|consen  180 TTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHNDMQGLERL  259 (519)
T ss_pred             cHHHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchheeccccccCceEEEEecCCHHHHHHH
Confidence            4467899999999999999999999999999864 4599999998876542211          0            012


Q ss_pred             HH----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c-------ccCCCe
Q 019543          110 LS----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P-------LELGAD  145 (339)
Q Consensus       110 ~~----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~-------~~~~~D  145 (339)
                      ++                                  +++++++|||.++++.||+|+.|..+.   .       -+..+|
T Consensus       260 Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvD  339 (519)
T KOG1357|consen  260 LRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVD  339 (519)
T ss_pred             HHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhhe
Confidence            22                                  999999999999999999998776532   1       123468


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---------HHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---------ALRVEKQQDNA  214 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---------~~r~~~~~~~a  214 (339)
                      |.+++|+|+++.    .||++.+++ ++++.++....  .+++.+||..+...+..++.+         .++.+++.+|.
T Consensus       340 ImMGtftKSfga----~GGyiagsk-~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns  414 (519)
T KOG1357|consen  340 IMMGTFTKSFGA----AGGYIAGSK-ELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENS  414 (519)
T ss_pred             eecceehhhccc----ccceecCcH-HHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhh
Confidence            999999999983    478888775 68887775432  456778887777666665543         57788888999


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+++..|+....+   .| +              ...++++++.+-...+...|.+.+....+++-.++      .|++.
T Consensus       415 ~yfr~~l~~~gfi---vy-G--------------~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvg------fPatp  470 (519)
T KOG1357|consen  415 RYFRWELQKMGFI---VY-G--------------NNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVG------FPATP  470 (519)
T ss_pred             HHHHHhhhcCcEE---Ee-c--------------CCCCCcceeeecCcccccHHHHHHHhcCceEEEEe------CCCch
Confidence            9888888776432   22 1              12578999987555566677777766666655333      45431


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                    +..+++|+++...|+.+.++.+.++.+.
T Consensus       471 --------------l~e~r~R~c~Sa~ht~e~ld~~l~~i~~  498 (519)
T KOG1357|consen  471 --------------LLESRARFCLSASHTKEDLDRALEVIDR  498 (519)
T ss_pred             --------------HHHhHHHhhhcccccHHHHHHHHHHHhh
Confidence                          2457789999999988877777776654

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.72  E-value=1.2e-15  Score=145.03  Aligned_cols=239  Identities=18%  Similarity=0.100  Sum_probs=147.3

Q ss_pred             chHHHHHHHHHhHhCCC----eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--HHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD----RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~----~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--~~~~----------------  111 (339)
                      ...+++++.+++++|++    .+++++||+.|+..++ +++.+||.+++..+.+.+..  .+.+                
T Consensus        35 ~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~  114 (363)
T TIGR02326        35 IVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEP  114 (363)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCC
Confidence            35788899999999985    2556788899998654 57788888766555443321  1111                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++++|++|+.|... +...+++|++++|++|+++
T Consensus       115 ~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~  194 (363)
T TIGR02326       115 PDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQ  194 (363)
T ss_pred             CCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccc
Confidence                                              89999999999999999999887542 3335678999999999997


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHH------------HHh------cCCCCChHHHHHHHhchhh------HHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFL------------QNA------EGSGLAPFDCWICLRGVKT------MALRVEKQQD  212 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~------------~~~------~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~  212 (339)
                      |+.+  .|+++.++ +..+++...            ...      +....+......+..+++.      ++.+.++..+
T Consensus       195 ~p~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~  271 (363)
T TIGR02326       195 GVPG--FGFVIARQ-AELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQ  271 (363)
T ss_pred             cCCc--ceEEEECH-HHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            6643  37888875 444443210            000      0012222222222222222      3456677778


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCH--HHHHHHHccCCcceeecccCCccccee
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLIS  289 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~  289 (339)
                      +++++.+.|+++ ++..+..+.               ..++ +.+|.+.+.  ....++.+.|++.|+.++.|..     
T Consensus       272 ~~~~l~~~L~~~-g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~-----  330 (363)
T TIGR02326       272 NQKTLVAGMRAL-GFEPLLDDE---------------IQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKV-----  330 (363)
T ss_pred             HHHHHHHHHHHc-CCeeccCcc---------------cCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcC-----
Confidence            888899998876 333221110               0233 456766431  2345677778777887765431     


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       +                  ....+|||+...+..+.++.+.++|++
T Consensus       331 -~------------------~~~~iRi~~~~~~~~edv~~~l~~l~~  358 (363)
T TIGR02326       331 -S------------------QVDCFRIGNIGEVDAADITRLLTAIGK  358 (363)
T ss_pred             -C------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence             0                  135799997444445555556555543

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.72  E-value=1.9e-15  Score=145.65  Aligned_cols=171  Identities=16%  Similarity=0.142  Sum_probs=116.4

Q ss_pred             chHHHHHHHHHhHhCC----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDKA----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++++++.+.+++.+|.    +++++++++++|+..++ .++++||+|+++++.|.+....+.                  
T Consensus        74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~  153 (402)
T PRK06107         74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFK  153 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCC
Confidence            5667777877777664    34566666689988544 578999999999987654322111                  


Q ss_pred             -----------------------------------HHHHHHHHHc-CCEEEEeCCcCCCCCcC-c---c-cC-----CCe
Q 019543          112 -----------------------------------RKIAEMAHAH-GALLLVDNSIMSPVLSR-P---L-EL-----GAD  145 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~-g~~livD~a~a~g~~~~-~---~-~~-----~~D  145 (339)
                                                         ++|+++|++| |+++|+|++|+...+.. +   + ..     .--
T Consensus       154 ~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~v  233 (402)
T PRK06107        154 LTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRV  233 (402)
T ss_pred             CCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCE
Confidence                                               7889999998 99999999996432211 1   1 11     124


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L  221 (339)
                      ++++||||.++.+| .+.||++++ +++++.+.......+...+....+++...|+    .+....++..++.+.+.+.|
T Consensus       234 i~~~S~SK~~~~pG-lRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  311 (402)
T PRK06107        234 LVTNGVSKTYAMTG-WRIGYAAGP-ADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALL  311 (402)
T ss_pred             EEEeccchhhcCcc-cceeeeecC-HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999998666 456788776 4688888877665555566655554444442    23445556677788888999


Q ss_pred             hCCCCc
Q 019543          222 ASHPRV  227 (339)
Q Consensus       222 ~~~~~i  227 (339)
                      +.++++
T Consensus       312 ~~~~g~  317 (402)
T PRK06107        312 NAIPGL  317 (402)
T ss_pred             hcCCCC
Confidence            887664

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.72  E-value=1.7e-15  Score=145.25  Aligned_cols=208  Identities=13%  Similarity=0.037  Sum_probs=129.3

Q ss_pred             HHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+|+++    |    .+ .+++++++.+|+..++ .+++|||+|++++|.|......++               
T Consensus        70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  149 (388)
T PRK07366         70 TLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAEN  149 (388)
T ss_pred             CHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCcc
Confidence            345666666654    4    23 3555566688988655 478999999999998876543322               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cc-cC--C--
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-EL--G--  143 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~-~~--~--  143 (339)
                                                            ++|+++|++||++||+||+|+...+..     .+ ..  .  
T Consensus       150 ~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~  229 (388)
T PRK07366        150 DFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKS  229 (388)
T ss_pred             CCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcc
Confidence                                                  889999999999999999996443211     11 11  1  


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh-HH-HH-HHHhc-hhhHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP-FD-CW-ICLRG-VKTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~-~~-a~-~~~~~-l~~~~~r~~~~~~~a~~l~~  219 (339)
                      .-|+++||||.+|.+|. +.||++++ +++++.+.......+...+. .. ++ .++.. -+.++..++..+++.+.+.+
T Consensus       230 ~vi~~~SfSK~~g~~Gl-RiG~~v~~-~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~  307 (388)
T PRK07366        230 VSIEFFTLSKSYNMGGF-RIGFAIGN-AQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFIN  307 (388)
T ss_pred             cEEEEeecccccCCcch-hheehcCC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            23788999999987774 56788776 47888887776554433322 22 21 11111 12234445556677777888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccC-CcceeecccCCc
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETT-KYFSITVSFGSV  284 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L-~~~~i~v~~G~~  284 (339)
                      .|+.+ ++. +..|                +.|..+++.+.+.  ....+|++.+ +..|+.+..|..
T Consensus       308 ~L~~~-~~~-~~~p----------------~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~  357 (388)
T PRK07366        308 ALHQI-GWP-VPLP----------------EATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSG  357 (388)
T ss_pred             HHHHC-CCc-ccCC----------------CeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchH
Confidence            88876 332 1122                1456677777532  1235666655 566888776643

>PRK07683 aminotransferase A; Validated

Probab=99.72  E-value=1.8e-15  Score=145.17  Aligned_cols=224  Identities=16%  Similarity=0.182  Sum_probs=139.6

Q ss_pred             chHHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +...+|++.+++++    |    .+ +.++++++++|+.+++ .++++||+|+++++.|.+....+.             
T Consensus        65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  144 (387)
T PRK07683         65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS  144 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc
Confidence            34567777887776    3    23 5677777799998655 478999999999998876543222             


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc-cC----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL-EL----GA  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~-~~----~~  144 (339)
                                                             ++|+++|+++|+++|+|++|+...+..   ++ ..    +-
T Consensus       145 ~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~  224 (387)
T PRK07683        145 TGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREK  224 (387)
T ss_pred             ccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCC
Confidence                                                   889999999999999999997554321   11 11    23


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~  220 (339)
                      .|++.||||.++.+| .+.||+++++ ++++.+.........+.+.....++...|+    .++..+++..++.+.+.+.
T Consensus       225 vi~~~s~SK~~~~pG-lRiG~i~~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (387)
T PRK07683        225 TIVINGLSKSHSMTG-WRIGFLFAPS-YLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNR  302 (387)
T ss_pred             eEEEeeccccccCcc-ceeEEEEcCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999766 4567887764 677777765443333344443333333332    2333344556677777788


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCC-HHHHHHHHcc-CCcceeecccCCcccceeccccccCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS-LALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~-~~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      |+.. ++. +..|                 .++ .++..+.+ .....+|+.. ++..|+.+..|..+.    +      
T Consensus       303 l~~~-~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----~------  353 (387)
T PRK07683        303 LISM-GLD-VEKP-----------------TGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS----E------  353 (387)
T ss_pred             HHHc-CCc-ccCC-----------------CeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC----C------
Confidence            8764 222 1111                 234 34444432 1123455544 466788877664321    1      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEecc
Q 019543          298 SIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                 ..++.+||+++.
T Consensus       354 -----------~~~~~~Ri~~~~  365 (387)
T PRK07683        354 -----------YGEGYVRLSYAY  365 (387)
T ss_pred             -----------CCCCeEEEEecC
Confidence                       134789999996

>PLN02656 tyrosine transaminase

Probab=99.72  E-value=3.2e-15  Score=144.36  Aligned_cols=169  Identities=12%  Similarity=0.073  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...+|++.++++++        .+++++++++++|+..+ ..+++|||+|+++++.|........               
T Consensus        74 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~  153 (409)
T PLN02656         74 GLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEK  153 (409)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcC
Confidence            34567777777653        35677888889998754 4578999999999998875432111               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-cC---CCe
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-EL---GAD  145 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~~---~~D  145 (339)
                                                            ++|+++|++||++||+|++|+...+..    ++ ..   ..-
T Consensus       154 ~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v  233 (409)
T PLN02656        154 GWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPV  233 (409)
T ss_pred             CCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcE
Confidence                                                  889999999999999999997443211    11 11   124


Q ss_pred             EEEeccccccccCCCceEEEEEEcC-------hhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKG-------ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDN  213 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~-------~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~  213 (339)
                      |++.||||.++.+|. +.||+++++       +++++.+....... ...+.....++...|+     .+...+++.+++
T Consensus       234 i~~~SfSK~f~~pGl-RiG~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  311 (409)
T PLN02656        234 LTLGSLSKRWIVPGW-RLGWFVTTDPSGSFRDPKIVERIKKYFDIL-GGPATFIQAAVPTILEQTDESFFKKTINILKQS  311 (409)
T ss_pred             EEEcccchhccCcce-eEEEEEEeCcccccccHHHHHHHHHHHhhh-cCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            888999999988775 566777642       35667776654433 2334444444333332     244455566677


Q ss_pred             HHHHHHHHhCCCC
Q 019543          214 AQKIAEFLASHPR  226 (339)
Q Consensus       214 a~~l~~~L~~~~~  226 (339)
                      .+.+.+.|+.+++
T Consensus       312 r~~~~~~L~~~~~  324 (409)
T PLN02656        312 SDICCDRIKEIPC  324 (409)
T ss_pred             HHHHHHHHhhCCC
Confidence            7888888887654

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.72  E-value=8.3e-16  Score=146.53  Aligned_cols=244  Identities=24%  Similarity=0.250  Sum_probs=158.7

Q ss_pred             CchHHHHHHHHHhHhCCCe---EEEcCcHHHHHHHHH-Hh---cCCCCEEEEcCCCccchHHHHH---------------
Q 019543           54 NPTRDALESLLAKLDKADR---ALCFTSGMAALAAVT-HL---LGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~---~l~~~sG~~A~~~il-~l---l~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ....++.++.+++++|++.   .++++|++.|+..++ .+   +++||+|++.+..|++....+.               
T Consensus        42 ~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~  121 (371)
T PF00266_consen   42 AEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPA  121 (371)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence            4567899999999999765   556777788887644 45   7999999999888877652222               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++||++|+++++|.+|+.|.. .+...+++|++++|.+|
T Consensus       122 ~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K  201 (371)
T PF00266_consen  122 DPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK  201 (371)
T ss_dssp             GTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS
T ss_pred             cccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecccc
Confidence                                                 9999999999999999999998865 34445789999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH-----------Hh---------c-CCCCChHHHHHHHhchhh-----HHHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ-----------NA---------E-GSGLAPFDCWICLRGVKT-----MALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~-----------~~---------~-~~~~~~~~a~~~~~~l~~-----~~~r~  207 (339)
                       ++|+.+  .|+++.++ +..++++...           ..         + +.+.+....+.+..+++.     ++...
T Consensus       202 -l~gp~G--~g~l~v~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~  277 (371)
T PF00266_consen  202 -LGGPPG--LGFLYVRP-EAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIR  277 (371)
T ss_dssp             -TTSSST--EEEEEEEH-HHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCCc--hhhheehh-hhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccch
Confidence             777654  47888876 5666663110           00         1 112222222222222332     23335


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++..+.++++.+.|++.+++.. ..|..   .         ...+++++|.+.+.+ ...+.+.|...+|.++.|...+ 
T Consensus       278 ~~~~~l~~~~~~~l~~~~~~~~-~~~~~---~---------~~~~~i~~~~~~~~~-~~~~~~~L~~~~I~~~~G~~~~-  342 (371)
T PF00266_consen  278 ERIRELAEYLREALEELPGIEV-LGPDD---E---------PRRPSIVSFNLPGSD-ADDVVKYLEERGIAVSTGSACA-  342 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEEE-SSSSC---G---------GBGTTEEEEEETTSS-HHHHHHHHHHHTEEEEESTTTC-
T ss_pred             hhhhhHHHHHHhhhhcCCceeE-eeecc---c---------ccccceEEEeecCCC-HHHHHHHHhhcCEEEeccCccc-
Confidence            5566778889999999888653 22311   1         125789999885432 3566666766688888764322 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHH
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  330 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l  330 (339)
                        .|.           ....+ ..+.||+|++..++++.|+.|
T Consensus       343 --~~~-----------~~~~~-~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  343 --GPS-----------LDILG-MGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             --HHH-----------HHHHH-TTTEEEEE-GTTSSHHHHHHH
T ss_pred             --HHH-----------HHHhC-CCCEEEEeccCCCCHHHHhhC
Confidence              110           01111 127899999999999877765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.71  E-value=9.4e-16  Score=147.34  Aligned_cols=239  Identities=18%  Similarity=0.091  Sum_probs=151.9

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHH-HHHHHHH-HhcCC--CCEEEEcCCCccchHHHHH---------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGM-AALAAVT-HLLGT--GEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~-~A~~~il-~ll~~--GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+.++++++++++++|.+  .++++++|+ +++.+++ .++.+  ||+|+++++.|+.+...+.               
T Consensus        62 ~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~  141 (398)
T cd00613          62 RLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPS  141 (398)
T ss_pred             HHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEecc
Confidence            3467789999999999976  677777665 4444443 35665  9999998887765432211               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|+++|++||+++|+|++|+.+.. .++...++|++++|++|
T Consensus       142 ~~~~~~d~~~l~~~i~~~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K  221 (398)
T cd00613         142 DEGGTVDLEALKEEVSEEVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQK  221 (398)
T ss_pred             CCCCCcCHHHHHHhcCCCeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccc
Confidence                                                 8999999999999999999876542 33345678999999999


Q ss_pred             ccccC---CCceEEEEEEcChhHHHHHHHH-------------------------HHhcC----CCCChHH---HHHHHh
Q 019543          154 FIAGH---SDVMAGVLAVKGERLAKELYFL-------------------------QNAEG----SGLAPFD---CWICLR  198 (339)
Q Consensus       154 ~l~g~---~~~~gG~v~~~~~~l~~~l~~~-------------------------~~~~~----~~~~~~~---a~~~~~  198 (339)
                      ++ ++   |+..+|+++.++ ++.+.+...                         ++..+    ...++..   ++..+.
T Consensus       222 ~~-~p~g~Ggp~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~  299 (398)
T cd00613         222 TG-VPHGGGGPGAGFFAVKK-ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIV  299 (398)
T ss_pred             cC-CCCCCCCCceeEEEEhh-hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHH
Confidence            98 33   234578888765 455543100                         00001    0011111   111122


Q ss_pred             ch--hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCc
Q 019543          199 GV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKY  274 (339)
Q Consensus       199 ~l--~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~  274 (339)
                      .+  +.+++..++..++++++.+.|++++...   .+.              ....++++|.+..  ...+.++++.|..
T Consensus       300 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~~L~~  362 (398)
T cd00613         300 YLGPEGLKEIAERAHLNANYLAKRLKEVGGVL---PFN--------------GPFFHEFVLRLPPLYGIRAEDLAKALID  362 (398)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCC--------------CCeeEEEEEEcCCcchHHHHHHHHhhhh
Confidence            11  2244556677788889999998876432   111              1123456777653  2356788888877


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      .++.+..       ..|                 ..++.||+|+...++++.|+.+.++|
T Consensus       363 ~gi~~~~-------~~~-----------------~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         363 GGFHAPT-------MYL-----------------PVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             cCccccc-------ccc-----------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence            6664321       011                 13478999999999999888887764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.71  E-value=9.1e-16  Score=149.95  Aligned_cols=244  Identities=18%  Similarity=0.151  Sum_probs=143.5

Q ss_pred             CCchHHHHH----HHHHhHhCCCe-E----EEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccch----------------
Q 019543           53 GNPTRDALE----SLLAKLDKADR-A----LCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGT----------------  106 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~~-~----l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~----------------  106 (339)
                      +....+.+|    +++++++|++. .    +.++||++|+.+ +.++++|||+|++++..+++.                
T Consensus        74 g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~  153 (452)
T PTZ00094         74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATS  153 (452)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccce
Confidence            344556676    48899999763 2    223689999986 556899999999965432211                


Q ss_pred             ---------------------HHHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----Ccc
Q 019543          107 ---------------------DRLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPL  140 (339)
Q Consensus       107 ---------------------~~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~  140 (339)
                                           ...++                    ++|.++|+++|+++++|++|+.|...     .++
T Consensus       154 ~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~  233 (452)
T PTZ00094        154 IYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF  233 (452)
T ss_pred             eeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC
Confidence                                 01110                    89999999999999999999998762     122


Q ss_pred             cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hc---CCCCChHHHHHHHhchhh-----HHHHHHHH
Q 019543          141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE---GSGLAPFDCWICLRGVKT-----MALRVEKQ  210 (339)
Q Consensus       141 ~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~---~~~~~~~~a~~~~~~l~~-----~~~r~~~~  210 (339)
                       .++|++++|++|+|+||.   ||++++++ .+.+.+....+  .+   ..+.++...+.+..+++.     .+...++.
T Consensus       234 -~~~D~l~~S~hK~l~GP~---Gg~l~~~~-~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i  308 (452)
T PTZ00094        234 -PYADVVTTTTHKSLRGPR---SGLIFYRK-KVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQV  308 (452)
T ss_pred             -CCCcEEEcCCccCCCCCC---ceEEEEec-ccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence             278999999999998763   57777765 34443332211  11   113333333323333333     34456777


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceec
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      .++++++.+.|++. ++..+ .++-+             ..-.+++|...+. ....+...|...||.++.-+     .+
T Consensus       309 ~~l~~~l~~~L~~~-g~~v~-~~~~~-------------~~~~~v~~~~~~~-~~~~~~~~L~~~gI~vs~~~-----~p  367 (452)
T PTZ00094        309 LKNAKALAAALEKR-GYDLV-TGGTD-------------NHLVLVDLRPFGI-TGSKMEKLLDAVNISVNKNT-----IP  367 (452)
T ss_pred             HHHHHHHHHHHHhC-CcEEe-cCCCC-------------CceEeecCCcCCC-CHHHHHHHHHHCCcEEeccc-----CC
Confidence            78999999999774 54332 22100             0123344433221 23455666666788775211     01


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCH----HHHHHHHHHHHh
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDV----NDLISDLDKALR  335 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~----~~li~~l~~al~  335 (339)
                      +....             ..++.||+|+..-.+    ++.++.+.++|+
T Consensus       368 ~~~~~-------------~~~~~vRis~~~~tt~g~~~~di~~l~~~l~  403 (452)
T PTZ00094        368 GDKSA-------------LNPSGVRLGTPALTTRGAKEKDFKFVADFLD  403 (452)
T ss_pred             CCCcC-------------CCCCeEEECCHHHHhCCCCHHHHHHHHHHHH
Confidence            11100             134789999954333    455555555544

>PRK14012 cysteine desulfurase; Provisional

Probab=99.71  E-value=2.3e-15  Score=145.18  Aligned_cols=252  Identities=16%  Similarity=0.106  Sum_probs=150.0

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hh----cCCCCEEEEcCCCccchHHHH---H-------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HL----LGTGEEIVAGDDLYGGTDRLL---S-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~l----l~~GD~Vi~~~~~y~~~~~~~---~-------------  111 (339)
                      +..+++|+.+++++|++  .+++++||++|+..++ ++    .++||+|++++..|+.....+   .             
T Consensus        49 ~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~  128 (404)
T PRK14012         49 EAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS  128 (404)
T ss_pred             HHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC
Confidence            56789999999999975  4778888899987533 33    478999999988876543211   1             


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccc
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFI  155 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l  155 (339)
                                                         ++|.++|+++|+++++|++|+.|... +....++|++++|++|.+
T Consensus       129 ~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~  208 (404)
T PRK14012        129 NGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIY  208 (404)
T ss_pred             CCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhcc
Confidence                                               99999999999999999999988653 333567899999999977


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHH-H------HhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFL-Q------NAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~-~------~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      ++.  ..|+++ .+++.. .++... .      +......+.......-.++    .......+++++.++++.+.|+.+
T Consensus       209 gp~--g~G~l~-~~~~~~-~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~  284 (404)
T PRK14012        209 GPK--GIGALY-VRRKPR-VRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI  284 (404)
T ss_pred             CCC--ceEEEE-EecCCC-CCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            632  234444 444322 122110 0      0001111111111111111    123445666778888999999888


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc-eeccccccCCCCCHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL-ISMPCFMSHASIPVEV  303 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~-~~~p~~~~h~~~~~~~  303 (339)
                      +++.....+  + +.         ......++|.+.+.   ..+...|+  +++++.|...+. ...|.         ..
T Consensus       285 ~~i~~~~~~--~-~~---------~~~~~~~~~~~~~~---~~~~~~l~--~~~i~~g~~~~~~~~~~~---------~~  338 (404)
T PRK14012        285 EEVYLNGDL--E-QR---------VPGNLNVSFNYVEG---ESLIMALK--DLAVSSGSACTSASLEPS---------YV  338 (404)
T ss_pred             CCEEEeCCc--c-cc---------CCCEEEEEEeCcCH---HHHHHhCC--CeEEEchhhhCCCCCCCC---------HH
Confidence            877532111  0 00         01223566665333   24555665  455555532111 11111         11


Q ss_pred             HHhCCC----CCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          304 RQARGL----TEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       304 ~~~~g~----~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...+|+    ..+.||+|++...+++.++.+.++|++
T Consensus       339 ~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~  375 (404)
T PRK14012        339 LRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRK  375 (404)
T ss_pred             HHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            122343    357899999998888878888877764

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.71  E-value=2.5e-15  Score=141.84  Aligned_cols=240  Identities=19%  Similarity=0.144  Sum_probs=151.7

Q ss_pred             chHHHHHHHHHhHhCCC----eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccch-H-HHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD----RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGT-D-RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~----~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~-~-~~~~----------------  111 (339)
                      +..+++++.+++++|.+    .+++++||+.++..++ .++.+||+|++..+.+.+. . ...+                
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~  110 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEP  110 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCC
Confidence            67889999999999975    3446788899998655 5778888877655433322 1 1111                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++++|++++.|... +...+++|++++|++|+++
T Consensus       111 ~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~  190 (355)
T TIGR03301       111 PDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLE  190 (355)
T ss_pred             CCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccc
Confidence                                              89999999999999999999877532 2234578999999999987


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHH------------HH-----hcCCCCChHHHHHH---Hhchhh---HHHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFL------------QN-----AEGSGLAPFDCWIC---LRGVKT---MALRVEKQQDN  213 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~------------~~-----~~~~~~~~~~a~~~---~~~l~~---~~~r~~~~~~~  213 (339)
                      |+.+  .|++++++ ++++.+...            ..     .+..+.+....+.+   +..+..   ++.+.++.+++
T Consensus       191 ~~~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~  267 (355)
T TIGR03301       191 GVPG--FGFVIARR-DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRN  267 (355)
T ss_pred             cCCc--eeEEEECH-HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            5533  37888875 566655410            00     01112333322222   222211   45566777788


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceecc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                      .+++.+.|+++ +++. ..|.  .           ...+.+++|.+.+.  ....++.+.|+..|+.++.|..      +
T Consensus       268 ~~~~~~~L~~~-g~~~-~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~------~  326 (355)
T TIGR03301       268 RELLVDGLRAL-GFQP-LLPE--R-----------WQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKL------T  326 (355)
T ss_pred             HHHHHHHHHHc-CCee-ecCC--C-----------CCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCcc------c
Confidence            89999999876 4432 2221  0           01234567776431  2345777788777877664421      0


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                        ..+.||||+.....++.++.+.++|++
T Consensus       327 ------------------~~~~iRis~~~~~~~~~i~~~~~~l~~  353 (355)
T TIGR03301       327 ------------------LADTFRIGTIGEIDAADIERLLEAIKD  353 (355)
T ss_pred             ------------------cccEEEEecCCCCCHHHHHHHHHHHHh
Confidence                              125799999665666667777777764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK09148 aminotransferase; Validated

Probab=99.71  E-value=2.7e-15  Score=144.74  Aligned_cols=226  Identities=14%  Similarity=0.078  Sum_probs=141.1

Q ss_pred             HHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           58 DALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+|++.+++++    |    .+ ++++++++++|+..++ .++++||+|++++|.|......+.                
T Consensus        71 ~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~  150 (405)
T PRK09148         71 PGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE  150 (405)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC
Confidence            45555555554    4    23 4666677789998654 478999999999999876542222                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---c-cC----CCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---L-EL----GAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~-~~----~~D  145 (339)
                                                           ++|+++|++||++||+||+|+...+.. +   + ..    ...
T Consensus       151 ~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~  230 (405)
T PRK09148        151 FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVT  230 (405)
T ss_pred             CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcE
Confidence                                                 789999999999999999997433211 1   1 11    224


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L  221 (339)
                      |++.||||.++.+|. +.||++++ +++++.+...+.....+.+.....++...|+    .+...+++..++.+.+.+.|
T Consensus       231 i~~~SfSK~~~~pGl-R~G~~v~~-~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L  308 (405)
T PRK09148        231 VEFTSMSKTFSMAGW-RMGFAVGN-ERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESF  308 (405)
T ss_pred             EEEeccccccCCcch-heeeeeCC-HHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999997774 56788775 4788888777655444444443333333332    23444555667777888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---HHHHHHHccC-CcceeecccCCcccceeccccccCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      +.++ +. +..|                ..|..+++.+.+.   ....+|++.+ +..|+.+..|..+.    +      
T Consensus       309 ~~~~-~~-~~~p----------------~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~----~------  360 (405)
T PRK09148        309 GRAG-WD-IPPP----------------AASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFG----E------  360 (405)
T ss_pred             HHcC-Cc-cCCC----------------CeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhC----C------
Confidence            8752 21 1112                1344566666432   1235666654 46788887765421    0      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                                 -.++.+||+++ ++.+.
T Consensus       361 -----------~~~~~~Ri~~~-~~~~~  376 (405)
T PRK09148        361 -----------HGDGYVRIALV-ENEQR  376 (405)
T ss_pred             -----------CCCCeEEEEec-CCHHH
Confidence                       02367999998 44444

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.71  E-value=1.8e-15  Score=143.50  Aligned_cols=234  Identities=16%  Similarity=0.128  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           56 TRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      ....|++.+|++++.  +++++++++++++..++..+.+||. ++.+|.|......++                      
T Consensus        56 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~~g~v-iv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~  134 (356)
T PRK08056         56 EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGLKPRRA-MIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLTDA  134 (356)
T ss_pred             cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCCE-EEeCCCcHHHHHHHHHcCCeEEEEecccccCCCccHH
Confidence            468999999999975  3566666668888766655578874 556677654432221                      


Q ss_pred             ------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cc-cCCCeEEEecccccc
Q 019543          112 ------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-ELGADIVMHSATKFI  155 (339)
Q Consensus       112 ------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~-~~~~Di~~~S~sK~l  155 (339)
                                                    ++|+++|++||++||+|++|.......     .+ .....+++.||||++
T Consensus       135 ~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~  214 (356)
T PRK08056        135 ILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY  214 (356)
T ss_pred             HHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc
Confidence                                          778999999999999999985432211     11 123468999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEec
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNY  232 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~  232 (339)
                      +.+|.+ .||++++++.+.+.++...  ..+..+.+.+.++...++   ......++.+++.+++.+.|+.++++. + +
T Consensus       215 ~~~G~R-iG~~v~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~  289 (356)
T PRK08056        215 AIPGLR-LGYLVNSDDAAVARMRRQQ--MPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLT-V-W  289 (356)
T ss_pred             cCcchh-heeeecCCHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-E-c
Confidence            987754 5677775545666665432  223444444444433332   223335556777888889998877653 2 2


Q ss_pred             CCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCC
Q 019543          233 AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED  312 (339)
Q Consensus       233 p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~  312 (339)
                      |.                .+..+++.+...  ..+|++.|...|+.+..|..+.                     |...+
T Consensus       290 ~~----------------~~~~~~~~~~~~--~~~~~~~l~~~gI~v~~~~~f~---------------------~~~~~  330 (356)
T PRK08056        290 PG----------------RANYLFLRCERP--DIDLQRALLTQRILIRSCANYP---------------------GLDSR  330 (356)
T ss_pred             CC----------------CCcEEEEEcCCC--hHHHHHHHHHCCeEEEECCCCC---------------------CCCCC
Confidence            31                355677776422  3467777777788887664321                     11346


Q ss_pred             eEEEEecc-CCHHHHHHHHHHHH
Q 019543          313 LVRISVGI-EDVNDLISDLDKAL  334 (339)
Q Consensus       313 ~lRisvg~-e~~~~li~~l~~al  334 (339)
                      .||||++. ++.+.+++.|.+.+
T Consensus       331 ~iRis~~~~~~~~~l~~~l~~~~  353 (356)
T PRK08056        331 YYRVAIRSAAENERLLAALRNVL  353 (356)
T ss_pred             EEEEEEcCHHHHHHHHHHHHHHH
Confidence            89999997 44555555555544

>PRK08175 aminotransferase; Validated

Probab=99.71  E-value=1.9e-15  Score=145.35  Aligned_cols=238  Identities=12%  Similarity=0.052  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhHh----CC----C-eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----KA----D-RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g~----~-~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |.    + ++++++++++++..+ ..+++|||+|++++|.|+.....+.               
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~  148 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV  148 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCC
Confidence            345555555543    32    3 355555557888754 4578999999999998875432111               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc---c--CCC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPL---E--LGA  144 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~---~--~~~  144 (339)
                                                            ++|+++|++||++||+|++++...+.    ..+   .  .+.
T Consensus       149 ~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~  228 (395)
T PRK08175        149 DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDV  228 (395)
T ss_pred             CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccC
Confidence                                                  78999999999999999999643321    111   1  122


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~  220 (339)
                      .+++.||||.+|.+|. +.||++++ +++++.+...........+......+...++.    +...++..+++.+.+.+.
T Consensus       229 ~i~~~S~SK~~g~pGl-RiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  306 (395)
T PRK08175        229 AVEFFTLSKSYNMAGW-RIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKG  306 (395)
T ss_pred             EEEEeeccccccCcch-hheeeeCC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999987764 45788776 47888887766544443333332222222322    333455556677788888


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH---HHHHHHccC-CcceeecccCCcccceeccccccC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETT-KYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~---~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      |+.. ++. +..|                ..|..+++.+.+..   ...+|++.+ +..|+.+..|..+.    +     
T Consensus       307 L~~~-~~~-~~~p----------------~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~----~-----  359 (395)
T PRK08175        307 LHEA-GWM-VEMP----------------KASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG----D-----  359 (395)
T ss_pred             HHHc-CCc-ccCC----------------CEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC----c-----
Confidence            8876 332 2112                14668888875432   245677654 46788877664321    1     


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                                  ..++.+||+++.+  ..++.++.|.+.++
T Consensus       360 ------------~~~~~lRis~~~~~~~~~~al~~l~~~l~  388 (395)
T PRK08175        360 ------------YGDTHVRFALIENRDRIRQAIRGIKAMFR  388 (395)
T ss_pred             ------------CCCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                        1246799999742  12233444444444

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.71  E-value=8.6e-16  Score=145.74  Aligned_cols=232  Identities=15%  Similarity=0.168  Sum_probs=143.4

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcH-HHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSG-MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG-~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .+...+|++.+++++|.+  +.+++++| ++++..++ .+++|||+|+++++.|......++                  
T Consensus        68 ~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (361)
T PRK00950         68 EPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLD  147 (361)
T ss_pred             CCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcC
Confidence            445689999999999864  45554667 45666544 467999999999988765432221                  


Q ss_pred             ------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc--cCCCeEEEecccccccc
Q 019543          112 ------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL--ELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~--~~~~Di~~~S~sK~l~g  157 (339)
                                                    ++|.++|+++|+++|+|++|.......  .+  ....-++++||||.+|.
T Consensus       148 ~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~  227 (361)
T PRK00950        148 VDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGL  227 (361)
T ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcC
Confidence                                          899999999999999999996432111  11  11224788999999987


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecCC
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  234 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~  234 (339)
                      +| .+.|++++++ ++++.++.....+  .+++...+.+...++.   ++...++.+++.+++.+.|+    +. + +| 
T Consensus       228 ~G-lRiG~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~-~-~~-  296 (361)
T PRK00950        228 AG-LRIGYGFVPE-WLIDYYMRAKTPF--SLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FK-V-YP-  296 (361)
T ss_pred             ch-hhcchhcCCH-HHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----ee-E-CC-
Confidence            66 4457887764 6777776554322  3455544444444432   22223333344444444443    21 1 22 


Q ss_pred             CCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          235 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                                     ..+..+++.+.+ ....+|++.|...|+.+..|..+     +                +..++.|
T Consensus       297 ---------------~~~~~i~~~~~~-~~~~~~~~~l~~~gv~v~~~~~f-----~----------------~~~~~~l  339 (361)
T PRK00950        297 ---------------SEANFVLVDVTP-MTAKEFCEELLKRGVIVRDCTSF-----R----------------GLGDYYI  339 (361)
T ss_pred             ---------------CcceEEEEECCC-CCHHHHHHHHHHCCEEEeeCCcc-----C----------------CCCCCeE
Confidence                           135678887732 24567888877778877755321     1                0134689


Q ss_pred             EEEeccCCHHHHHHHHHHHHhc
Q 019543          315 RISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~  336 (339)
                      |||++.   ++.++.+.++|++
T Consensus       340 Ris~~~---~~~~~~l~~~L~~  358 (361)
T PRK00950        340 RVSIGT---FEENERFLEILKE  358 (361)
T ss_pred             EEECCC---HHHHHHHHHHHHH
Confidence            999983   2345566666654

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.71  E-value=3.5e-15  Score=141.40  Aligned_cols=233  Identities=15%  Similarity=0.175  Sum_probs=151.9

Q ss_pred             chHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      +...+|++.++++++.  ++.++++++++++..++..+.+ |.|++++|.|+.....++                     
T Consensus        54 ~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~  132 (354)
T PRK06358         54 PDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANE  132 (354)
T ss_pred             ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCccH
Confidence            4467899999999875  4566666668888866655555 678889988765443221                     


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc---c-CCCeEEEeccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL---E-LGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~---~-~~~Di~~~S~s  152 (339)
                                                     ++|+++|++||+++|+|++|.......    .+   . ..--|++.|||
T Consensus       133 ~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  212 (354)
T PRK06358        133 IVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFT  212 (354)
T ss_pred             HHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEech
Confidence                                           889999999999999999996433211    11   1 11238899999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+|. +.||++++++.+.+.+.....  ...++.....++...++   .+...++...++.+.+.+.|+.++++. 
T Consensus       213 K~~gl~G~-RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-  288 (354)
T PRK06358        213 KFFAIPGL-RLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIK-  288 (354)
T ss_pred             hhccCcch-hheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-
Confidence            99997774 567877765567777765542  33445544444444443   234455666777888889998876543 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      +..|                 .|+.+++.+.+.   .+|++.|...|+.+..|..+.                     +.
T Consensus       289 ~~~~-----------------~g~f~~~~~~~~---~~~~~~l~~~gI~v~~~~~f~---------------------~~  327 (354)
T PRK06358        289 VYKP-----------------SVNFIFFKLEKP---IDLRKELLKKGILIRSCSNYR---------------------GL  327 (354)
T ss_pred             EcCC-----------------cceEEEEEcCch---HHHHHHHHHCCeEEEECCCCC---------------------CC
Confidence            2212                 355777777543   467777767788877665321                     01


Q ss_pred             CCCeEEEEecc-CCHHHHHHHHHHH
Q 019543          310 TEDLVRISVGI-EDVNDLISDLDKA  333 (339)
Q Consensus       310 ~~~~lRisvg~-e~~~~li~~l~~a  333 (339)
                      .++.||||++. ++.+.+++.|.+.
T Consensus       328 ~~~~iRls~~~~~~~~~l~~~l~~~  352 (354)
T PRK06358        328 DENYYRVAVKSREDNKKLLKALEVI  352 (354)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            34679999997 4455555555443

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.71  E-value=2e-15  Score=144.43  Aligned_cols=236  Identities=14%  Similarity=0.118  Sum_probs=150.5

Q ss_pred             CCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           52 SGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +..+...+|++.+++++|.+  ++++++++++++..++ .+++|||+|++++|.|+......+                 
T Consensus        83 Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~  162 (380)
T PLN03026         83 YPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSL  162 (380)
T ss_pred             CCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCc
Confidence            33456789999999999854  4545555577887654 478999999999998764321111                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Cc---c-cCCCeEEEeccccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RP---L-ELGADIVMHSATKF  154 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~---~-~~~~Di~~~S~sK~  154 (339)
                                                      +++.++++.. +++|+||+|...... ..   . .....|++.||||.
T Consensus       163 d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~  241 (380)
T PLN03026        163 DVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKR  241 (380)
T ss_pred             CHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHh
Confidence                                            7888888754 999999999633221 11   1 12335899999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                      +|.+|. +.||+++++ ++++.+...+..  ..++.....++...|   +.+....++..++.+++.+.|+.++.+. + 
T Consensus       242 ~glaGl-RiGy~~~~~-~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-  315 (380)
T PLN03026        242 AGLAGL-RVGYGAFPL-SIIEYLWRAKQP--YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLE-P-  315 (380)
T ss_pred             hcCccc-cceeeecCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCe-E-
Confidence            987664 567888764 677777655432  334444333333334   2334445556677778888888775432 1 


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCC
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  311 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~  311 (339)
                      +|.                .+..+++.+.+.....+|.+.|...|+.++.+..      +                + .+
T Consensus       316 ~p~----------------~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~------~----------------~-~~  356 (380)
T PLN03026        316 YPS----------------DANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNS------K----------------E-LK  356 (380)
T ss_pred             CCC----------------CCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCC------C----------------C-CC
Confidence            331                4567778775322345777777777888765421      1                0 24


Q ss_pred             CeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          312 DLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       312 ~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+|||++..   +..+.|.+||++
T Consensus       357 ~~lRis~~~~---~~~~~l~~al~~  378 (380)
T PLN03026        357 GYIRVSVGKP---EHTDALMEALKQ  378 (380)
T ss_pred             CEEEEecCCH---HHHHHHHHHHHH
Confidence            6899999943   234466776664

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.71  E-value=2.4e-15  Score=144.89  Aligned_cols=239  Identities=13%  Similarity=0.051  Sum_probs=146.6

Q ss_pred             hHHHHHHHHHhHhC-------CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           56 TRDALESLLAKLDK-------ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g-------~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ...+|++.++++++       .+++++++++++|+..+ ..++++||+|+++++.|......++                
T Consensus        74 g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~  153 (401)
T TIGR01264        74 GALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKS  153 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccC
Confidence            45678888888775       34677888889999754 4578999999999998865543222                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-cC--C-CeE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-EL--G-ADI  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~~--~-~Di  146 (339)
                                                           ++|+++|+++|++||+|++|....+..    ++ ..  . --|
T Consensus       154 ~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  233 (401)
T TIGR01264       154 WEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPIL  233 (401)
T ss_pred             CCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEE
Confidence                                                 889999999999999999997433211    11 11  1 137


Q ss_pred             EEeccccccccCCCceEEEEEEcCh-----hHHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGE-----RLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQK  216 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~-----~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a~~  216 (339)
                      ++.||||.++.+|. +.||+++++.     ++++.++.... .....+.....++...|+     .+...+++..++.+.
T Consensus       234 ~~~SfSK~~~~~Gl-RiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~  311 (401)
T TIGR01264       234 SCGGLAKRWLVPGW-RLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAML  311 (401)
T ss_pred             EEccCcccCCCccc-eEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            88999999888774 5667777642     22233333221 122334443333333332     234445666677788


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-----HHHHHHHHccC-CcceeecccCCcccceec
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LALSKHVVETT-KYFSITVSFGSVKSLISM  290 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-----~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~  290 (339)
                      +.+.|+.++++. +..|                ..|..+++.+..     .....++++.+ +..|+.+..|..+.    
T Consensus       312 l~~~L~~~~~~~-~~~p----------------~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~----  370 (401)
T TIGR01264       312 CYGALAAVPGLR-PVMP----------------SGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFE----  370 (401)
T ss_pred             HHHHHHhCCCCc-ccCC----------------CeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcC----
Confidence            888898876542 1222                135566666532     11235666665 46788777654321    


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhc
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRT  336 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~  336 (339)
                                         .++.+|||++..  +.++-++.|.+.+++
T Consensus       371 -------------------~~~~iRis~~~~~~~l~~~l~rl~~~~~~  399 (401)
T TIGR01264       371 -------------------YPGFFRVVLTVPVVMMEEACSRIQEFCER  399 (401)
T ss_pred             -------------------CCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence                               136799999963  233445556555543

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.70  E-value=4.9e-15  Score=143.24  Aligned_cols=223  Identities=10%  Similarity=0.045  Sum_probs=140.3

Q ss_pred             HHHHHHHHHhHhC--------------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           57 RDALESLLAKLDK--------------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      ..+|++.++++++              .+++++++++++|+..++ .+++|||+|++++|.|......++          
T Consensus        77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~  156 (412)
T PTZ00433         77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYN  156 (412)
T ss_pred             cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEe
Confidence            4567777777654              245677777789998644 578999999999998876543222          


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---c-cC-
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---L-EL-  142 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~-~~-  142 (339)
                                                                 ++|+++|++||++||+|++|....+.. .   + .. 
T Consensus       157 ~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  236 (412)
T PTZ00433        157 CRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFD  236 (412)
T ss_pred             cCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhcc
Confidence                                                       888999999999999999997433211 1   1 11 


Q ss_pred             --CCeEEEeccccccccCCCceEEEEEE-cC----hhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHH
Q 019543          143 --GADIVMHSATKFIAGHSDVMAGVLAV-KG----ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQ  210 (339)
Q Consensus       143 --~~Di~~~S~sK~l~g~~~~~gG~v~~-~~----~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~  210 (339)
                        ..-|+++||||.++.+|. +.||+++ ++    +++++.++.... .....+.....++...+.     .+....++.
T Consensus       237 ~~~~~i~~~SfSK~~~~pGl-RlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  314 (412)
T PTZ00433        237 TTVPRVILGGTAKNLVVPGW-RLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNTPQEHLEQIVAKL  314 (412)
T ss_pred             CCCceEEEccchhhcCCCCe-eEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence              113788999999987775 4567765 22    245555554432 223455554443333332     234445566


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHccCC-cceeecccCCc
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETTK-YFSITVSFGSV  284 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~L~-~~~i~v~~G~~  284 (339)
                      .++.+.+.+.|+.+.++. +..|                ..|..+++.++..     ....+|++.|. ..|+.+..|..
T Consensus       315 ~~~r~~l~~~L~~~~~~~-~~~p----------------~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~  377 (412)
T PTZ00433        315 EEGAMVLYNHIGECIGLS-PTMP----------------RGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEI  377 (412)
T ss_pred             HHHHHHHHHHHhcCCCCc-ccCC----------------CeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccc
Confidence            677788888888765432 1112                1345667766431     13457777774 56888776643


Q ss_pred             ccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          285 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       285 ~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                      +.                       .++.+|||++..
T Consensus       378 f~-----------------------~~~~iRis~~~~  391 (412)
T PTZ00433        378 FH-----------------------MPGFTRLTISRP  391 (412)
T ss_pred             cC-----------------------CCCeEEEEecCC
Confidence            21                       135799999964

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.70  E-value=3.9e-15  Score=143.20  Aligned_cols=229  Identities=18%  Similarity=0.197  Sum_probs=139.7

Q ss_pred             chHHHHHHHHHhHhCC-----C-eEEEcCcHHHHHHHHH-HhcCC---CCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLDKA-----D-RALCFTSGMAALAAVT-HLLGT---GEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-----~-~~l~~~sG~~A~~~il-~ll~~---GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      .+++++.+.+.+.+|.     + ++++++++++|+..++ .+++|   ||+|++++|.|......++             
T Consensus        69 ~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~  148 (396)
T PRK09147         69 ALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDP  148 (396)
T ss_pred             HHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCc
Confidence            3444445544444452     3 4556666789997654 57899   9999999998875432221             


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c---c----c
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P---L----E  141 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~---~----~  141 (339)
                                                              ++|+++|++||++||+||+|+...+..   +   +    .
T Consensus       149 ~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  228 (396)
T PRK09147        149 ANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAE  228 (396)
T ss_pred             cccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccc
Confidence                                                    889999999999999999997543211   1   1    0


Q ss_pred             CC-----CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHH
Q 019543          142 LG-----ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDN  213 (339)
Q Consensus       142 ~~-----~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~  213 (339)
                      .+     --|++.||||.++.+| .+.||+++++ .+++.+.......+..+++....++...+   +.+...+++.+++
T Consensus       229 ~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~-~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~  306 (396)
T PRK09147        229 LGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDA-ALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREK  306 (396)
T ss_pred             cCccccccEEEEeccccccCCcc-ceeeeecCCH-HHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            11     1389999999988777 4567887764 67777776655455556655444333333   2234445555666


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~  292 (339)
                      .+.+.+.|+.+  +. +..|                ..|..+++.+..  ...+|++.| +..|+.+..|..+..  .+.
T Consensus       307 ~~~~~~~L~~~--~~-~~~p----------------~~g~f~~~~~~~--~~~~~~~~ll~~~gv~v~pg~~f~~--~~~  363 (396)
T PRK09147        307 FDAVTPILAPV--LD-VQLP----------------DAGFYLWAKVPG--DDTEFARRLYADYNVTVLPGSYLAR--EAH  363 (396)
T ss_pred             HHHHHHHHHHh--cC-CCCC----------------CeeEEEEEECCC--CHHHHHHHHHHhCCEEEeCCccccc--ccc
Confidence            66677777653  11 1122                145677777751  234566665 456888877754321  000


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                          . .        .-..+.+||+++..
T Consensus       364 ----~-~--------~~~~~~iRi~~~~~  379 (396)
T PRK09147        364 ----G-V--------NPGAGRVRIALVAP  379 (396)
T ss_pred             ----C-C--------CCCCCeEEEEecCC
Confidence                0 0        01346899999964

>PRK08363 alanine aminotransferase; Validated

Probab=99.70  E-value=4.5e-15  Score=142.84  Aligned_cols=241  Identities=16%  Similarity=0.121  Sum_probs=145.3

Q ss_pred             chHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      +...+|++.++++++        .++.++++++++|+..++ .+++|||+|+++++.|......+.              
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~  149 (398)
T PRK08363         70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEE  149 (398)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccc
Confidence            445678888888763        235677777789998654 578999999999998876543221              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c---cc-CCCe
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P---LE-LGAD  145 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~---~~-~~~D  145 (339)
                                                             ++|+++|+++|+++|+|++|+...+..   .   +. ..--
T Consensus       150 ~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~v  229 (398)
T PRK08363        150 EGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPV  229 (398)
T ss_pred             cCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcE
Confidence                                                   789999999999999999987533211   1   11 1123


Q ss_pred             EEEeccccccccCCCceEEEEEE-cChhHHHHHHHHHHh---cCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAV-KGERLAKELYFLQNA---EGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKI  217 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~-~~~~l~~~l~~~~~~---~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l  217 (339)
                      +++.||||.++.+|. +.||+++ +++.+++.++.....   .....+.....++...|    +.+....++.+++.+.+
T Consensus       230 i~~~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l  308 (398)
T PRK08363        230 IVMNGLSKVYFATGW-RLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYI  308 (398)
T ss_pred             EEEecchhccCCccc-eEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            778999999887764 4567776 344566665544321   12334444333332222    23445556667778888


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE-eeCCH--HHHHHHH-ccCCcceeecccCCcccceecccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSL--ALSKHVV-ETTKYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~-~~~~~--~~~~~~~-~~L~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+.|+.++++. +..|                 .++++.+ .+.+.  ....+++ ..|+..|+.+..|..+..      
T Consensus       309 ~~~L~~~~~~~-~~~p-----------------~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~------  364 (398)
T PRK08363        309 YKRLNEIPGIS-TTKP-----------------QGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGE------  364 (398)
T ss_pred             HHHHhcCCCCE-ecCC-----------------CeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC------
Confidence            88888876643 2222                 3444444 55421  1123443 335677888776654210      


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                                     ..++.+|||++..  +.++.++.|.+.++
T Consensus       365 ---------------~~~~~iRis~~~~~~~l~~~l~~l~~~~~  393 (398)
T PRK08363        365 ---------------YGAGHFRLVFLPPVEILEEAMDRFEEFMR  393 (398)
T ss_pred             ---------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                           0246899999743  22333444444443

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.70  E-value=6.6e-15  Score=141.93  Aligned_cols=224  Identities=12%  Similarity=0.056  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHhHhCC----C-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKA----D-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~----~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +++++.+.+.+..|.    + ++++++++++|+..++ .+++|||.|++++|.|+.....+.                  
T Consensus        76 lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  155 (403)
T PRK08636         76 LRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFE  155 (403)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCc
Confidence            344555555444352    3 4666666689988654 588999999999998865431111                  


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c---ccC
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P---LEL  142 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~---~~~  142 (339)
                                                                ++|+++|++||++||+||+|+...+..    +   +..
T Consensus       156 ~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~  235 (403)
T PRK08636        156 LDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEG  235 (403)
T ss_pred             cChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCC
Confidence                                                      889999999999999999997443211    1   111


Q ss_pred             --CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH---HHhchhh-HHHHHHHHHHHHHH
Q 019543          143 --GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLRGVKT-MALRVEKQQDNAQK  216 (339)
Q Consensus       143 --~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~---~~~~l~~-~~~r~~~~~~~a~~  216 (339)
                        ...|+++||||.++.+| .+.||++++ +++++.+.......+...+.....+   ++..-+. +....+...++.+.
T Consensus       236 ~~~~~i~~~S~SK~~~~~G-lRiG~iv~~-~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (403)
T PRK08636        236 AKDVAVESYTLSKSYNMAG-WRVGFVVGN-KKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDV  313 (403)
T ss_pred             ccccEEEEEecccccCCcc-ceeeeeeCC-HHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence              12366899999998766 456788775 4788877776553333333222222   2221122 33344555667777


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---HHHHHHHcc-CCcceeecccCCcccceeccc
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVET-TKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      +.+.|+.. ++. +..|                ..|..+++.+.+.   ....+|++. ++..|+.+..|..+.    + 
T Consensus       314 l~~~L~~~-~~~-~~~p----------------~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~----~-  370 (403)
T PRK08636        314 LIESFANA-GWE-LQKP----------------RASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFG----E-  370 (403)
T ss_pred             HHHHHHHC-CCc-ccCC----------------CcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhC----c-
Confidence            88888875 332 1112                1356777777532   123566655 445688777664321    0 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEecc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                                      ..++.+||+++.
T Consensus       371 ----------------~~~~~iRi~~~~  382 (403)
T PRK08636        371 ----------------YGDEYVRIALIE  382 (403)
T ss_pred             ----------------CCCCeEEEEecC
Confidence                            124689999984

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.69  E-value=2.1e-15  Score=144.28  Aligned_cols=199  Identities=16%  Similarity=0.137  Sum_probs=118.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCCCceEEEEEEcChh-HHHHHH--H-HHHhcCC
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELY--F-LQNAEGS  186 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l~~~l~--~-~~~~~~~  186 (339)
                      ++|.++|+++|+++++|++++.|.. .+....++|+++.|++|++|++|   .|+++.++.. +...+.  . .......
T Consensus       160 ~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G---~g~l~vr~~~~~~p~~~g~~~~~~~~~g  236 (382)
T TIGR03403       160 KEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG---VGGLYIRKGVELTPLFHGGEHMGGRRSG  236 (382)
T ss_pred             HHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc---eEEEEECCCCCCCCcccCCCCCCCcccC
Confidence            9999999999999999999988754 34445689999999999876444   2566555421 101000  0 0000012


Q ss_pred             CCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH
Q 019543          187 GLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  262 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~  262 (339)
                      +.+....+.+..+++    .++...++.++.++++.+.|+++++++.+. |.  .+           ...+++.|.+.+.
T Consensus       237 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~  302 (382)
T TIGR03403       237 TLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVG-DR--EH-----------RVPNTILISIKGV  302 (382)
T ss_pred             CcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEEC-CC--CC-----------CcCCEEEEEeCCC
Confidence            222222212222222    234445556677888888898888875332 21  00           0234677777543


Q ss_pred             HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       263 ~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      + ...+...|...+|.++.|...+      ...+.  +...+..+|..    .+.||+|++..++++.|+.+.++|++
T Consensus       303 ~-~~~~~~~L~~~gI~v~~g~~c~------~~~~~--~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~  371 (382)
T TIGR03403       303 E-GEAMLWDLNKAGIAASTGSACA------SEDLE--ANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKK  371 (382)
T ss_pred             C-HHHHHHhhccCCEEEEchhccC------CCCCC--cCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHH
Confidence            2 3355666888899999774321      11111  01233445543    36899999999988888988888864

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.69  E-value=4.3e-15  Score=141.49  Aligned_cols=235  Identities=14%  Similarity=0.064  Sum_probs=151.6

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc------CCCCEEEEcCCCccchHHHHH-------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL------GTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll------~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      .+..+++++.+++++|.+  ..+++++|+.++..++ .+.      ++||+|+++++.|..+....+             
T Consensus        58 ~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~  137 (373)
T TIGR03812        58 KKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDE  137 (373)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCC
Confidence            355689999999999975  4578888988876433 221      478999999876655432211             


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--------Ccc---cCCCe
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--------RPL---ELGAD  145 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~--------~~~---~~~~D  145 (339)
                                                         ++|.++|+++|+++++|++|+.+...        ..+   ..++|
T Consensus       138 ~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d  217 (373)
T TIGR03812       138 DYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQ  217 (373)
T ss_pred             CCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCC
Confidence                                               99999999999999999999754310        111   13678


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-CC-------CCChHHHHHHHhchh-----hHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-GS-------GLAPFDCWICLRGVK-----TMALRVEKQQD  212 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~~-------~~~~~~a~~~~~~l~-----~~~~r~~~~~~  212 (339)
                      .++.|.+|+..++. ..||+++.++ ++.+.++....+. +.       +.+....+.+...++     .++.+.++..+
T Consensus       218 ~~~~s~~K~~~~~~-~~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~  295 (373)
T TIGR03812       218 SITIDPHKMGLSPI-PAGGILFRSK-SYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECME  295 (373)
T ss_pred             EEEECccccCCCcC-CceEEEEeCH-HHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99999999654332 3455665554 5666553211111 11       112222222222333     23456777888


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccc
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      +++++++.|++++.. .+ ++                +..+++.|.+++.   ..+.+.|...|+.++.+.         
T Consensus       296 ~~~~l~~~L~~~g~~-~~-~~----------------~~~~~v~~~~~~~---~~v~~~L~~~gi~v~~~~---------  345 (373)
T TIGR03812       296 NTRYLVEELKKIGFE-PV-IE----------------PVLNIVAFEVDDP---EEVRKKLRDRGWYVSVTR---------  345 (373)
T ss_pred             HHHHHHHHHHhCCCe-EE-cC----------------CCceEEEEEeCCH---HHHHHHHHHCCceeccCC---------
Confidence            899999999887532 12 11                1346777877643   356666766676654210         


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                       .+..||+|++..++++.++.+.++|+++
T Consensus       346 -----------------~~~~iRis~~~~~t~edid~l~~~L~~~  373 (373)
T TIGR03812       346 -----------------CPKALRIVVMPHVTREHIEEFLEDLKEI  373 (373)
T ss_pred             -----------------CCCEEEEEEECCCCHHHHHHHHHHHhhC
Confidence                             2357999999988899999999998764

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.69  E-value=1.2e-15  Score=145.57  Aligned_cols=237  Identities=19%  Similarity=0.223  Sum_probs=153.3

Q ss_pred             CCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc----C----CCCEEEEcCCCccchH---------------
Q 019543           51 RSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----G----TGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll----~----~GD~Vi~~~~~y~~~~---------------  107 (339)
                      ++.++.+.+||+++++++|.+++++++||++|+..++.++    .    +||+|++.++.|++..               
T Consensus        65 ~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~  144 (379)
T TIGR00707        65 LYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKG  144 (379)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhcc
Confidence            3457889999999999999999999999999997544422    2    4799999888775321               


Q ss_pred             ----------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-
Q 019543          108 ----------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-  140 (339)
Q Consensus       108 ----------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~-  140 (339)
                                      ..+.                             ++|.++|++||+++|+||+|. .+..+... 
T Consensus       145 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~  224 (379)
T TIGR00707       145 FEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFA  224 (379)
T ss_pred             CCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhh
Confidence                            0000                             789999999999999999996 32222111 


Q ss_pred             ----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHH
Q 019543          141 ----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNA  214 (339)
Q Consensus       141 ----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a  214 (339)
                          ....|++  |+||.++ +| ...|++++++ ++++.+...........++...+.+...|+.+  ....++.+++.
T Consensus       225 ~~~~~~~~d~~--t~sK~~~-~G-~riG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~  299 (379)
T TIGR00707       225 YEHYGIEPDII--TLAKGLG-GG-VPIGATLAKE-EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKG  299 (379)
T ss_pred             HHhcCCCCCEE--EEccccc-CC-cccEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                1233544  6899999 44 4467787764 67666654322223445666666665555533  23456666777


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +++++.|++... . .....             ..+.|.++++.+++.  ..+|.+.|...|+.++.+            
T Consensus       300 ~~~~~~l~~~~~-~-~~~~~-------------~~~~g~~~~~~~~~~--~~~~~~~l~~~Gv~v~~~------------  350 (379)
T TIGR00707       300 DYFKERLEELGK-N-YPNKE-------------VRGKGLMLGIELEAP--CKDIVKKALEKGLLVNCA------------  350 (379)
T ss_pred             HHHHHHHHHHHh-h-CCCCc-------------cccCceEEEEEecCc--HHHHHHHHHHCCcEEeeC------------
Confidence            777777765311 0 00000             122466888887542  457788887777765421            


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                     ..+.+|+++....+++.++.+.++|++
T Consensus       351 ---------------~~~~lRi~~~~~~t~~~i~~~~~~l~~  377 (379)
T TIGR00707       351 ---------------GPKVLRFLPPLIITKEEIDEAVSALEE  377 (379)
T ss_pred             ---------------CCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence                           126799998876667767777777654

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.69  E-value=7.5e-15  Score=140.98  Aligned_cols=239  Identities=13%  Similarity=0.144  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhHh----CC-----CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----KA-----DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g~-----~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |.     +++++++++++|+.++ ..++++||+|+++++.|.+....++               
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  148 (391)
T PRK07309         69 LLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTEND  148 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcC
Confidence            456777777665    32     3577777779999754 4578999999999998876543222               


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cc-cC--CC
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PL-EL--GA  144 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~-~~--~~  144 (339)
                                                              ++|+++|++||+++|+|++|+...+ ..   ++ ..  .-
T Consensus       149 ~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~  228 (391)
T PRK07309        149 FVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQ  228 (391)
T ss_pred             CcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCC
Confidence                                                    8899999999999999999975433 11   11 11  22


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~  220 (339)
                      .|++.||||.++.+| .+.|++++++ ++++.+...........++.....+...++.    .....++..++.+.+.+.
T Consensus       229 ~i~~~S~SK~~g~~G-lRvG~~v~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  306 (391)
T PRK07309        229 TILINGLSKSHAMTG-WRIGLIFAPA-EFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEK  306 (391)
T ss_pred             EEEEecChhhccCcc-ceeEEEEeCH-HHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHH
Confidence            489999999998766 4567888774 6777777655433334455444433333432    122234445667777788


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccC-CcceeecccCCcccceeccccccCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      |+.+ ++. +..|                ..+..+++.+.+.  ....++++.+ +..|+.+..|..+.    +      
T Consensus       307 l~~~-~~~-~~~p----------------~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~----~------  358 (391)
T PRK07309        307 MTDL-GFK-IIKP----------------DGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFG----P------  358 (391)
T ss_pred             HHHC-CCe-ecCC----------------CeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhC----C------
Confidence            8765 332 1112                1233456665422  1234566553 45688777664321    1      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhc
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRT  336 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~  336 (339)
                                 ..++.+||+++.+  +.++.++.|.+++++
T Consensus       359 -----------~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~  388 (391)
T PRK07309        359 -----------YGEGYVRLSYAASMETIKEAMKRLKEYMEE  388 (391)
T ss_pred             -----------CCCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                       1347899999863  233445555555543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.69  E-value=2.8e-15  Score=142.24  Aligned_cols=232  Identities=15%  Similarity=0.168  Sum_probs=148.6

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+...+|++.++++++.+  +.++++++++++..++ .++++||+|++++|.|++......                   
T Consensus        63 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~  142 (359)
T PRK03158         63 DGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLKDGGHDLE  142 (359)
T ss_pred             CCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecCCCCcCHH
Confidence            345678999999999853  5666666688887554 578999999999998876543221                   


Q ss_pred             ----------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC----cc----cCCCeEEEecccc
Q 019543          112 ----------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR----PL----ELGADIVMHSATK  153 (339)
Q Consensus       112 ----------------------------~~I~~la~~--~g~~livD~a~a~g~~~~----~~----~~~~Di~~~S~sK  153 (339)
                                                  ++|.++++.  +|+++|+||+|.......    .+    .....+++.||||
T Consensus       143 ~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK  222 (359)
T PRK03158        143 AMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSK  222 (359)
T ss_pred             HHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechH
Confidence                                        778888877  599999999996543221    11    1234688999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      .++.+| .+.||+++++ ++++.+...+..  ...+.+...++...++.   ++...++.+++.+++.+.|+++ ++.. 
T Consensus       223 ~~g~~G-lRiG~~v~~~-~~~~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-  296 (359)
T PRK03158        223 AYGLAA-LRVGYGIASE-ELIEKLNIARPP--FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFY-  296 (359)
T ss_pred             hhcCcc-hhhehhcCCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCee-
Confidence            998766 4457887764 677777665432  34455554444444432   2333344455566677777765 3321 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                       +|.                .|..+++.++.  ...++.+.|.+.|+.+..|..+                      | .
T Consensus       297 -~~~----------------~g~~i~~~~~~--~~~~~~~~l~~~gv~v~~g~~f----------------------~-~  334 (359)
T PRK03158        297 -YPS----------------QTNFIFVDTGR--DANELFEALLKKGYIVRSGAAL----------------------G-F  334 (359)
T ss_pred             -CCC----------------cCcEEEEECCC--CHHHHHHHHHHCCeEEeeCCCC----------------------C-C
Confidence             231                35567777642  2356777776678887766432                      1 1


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          311 EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ++.+|||++..   +..+.+.++|++
T Consensus       335 ~~~iRi~~~~~---~~~~~l~~al~~  357 (359)
T PRK03158        335 PTGVRITIGLK---EQNDKIIELLKE  357 (359)
T ss_pred             CCeEEEecCCH---HHHHHHHHHHHH
Confidence            36799999843   334456666654

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.68  E-value=2.6e-15  Score=144.88  Aligned_cols=238  Identities=17%  Similarity=0.203  Sum_probs=156.4

Q ss_pred             CCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH--------------------
Q 019543           53 GNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD--------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~--------------------  107 (339)
                      .++...+|+++++++++  .+.+++++||++|+.+++.+   ..++|.|++.++.|++..                    
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  156 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL  156 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            46788999999999998  78899999999999865542   367899999887666520                    


Q ss_pred             ----------------------H----HHH----------------------------HHHHHHHHHcCCEEEEeCCcCC
Q 019543          108 ----------------------R----LLS----------------------------RKIAEMAHAHGALLLVDNSIMS  133 (339)
Q Consensus       108 ----------------------~----~~~----------------------------~~I~~la~~~g~~livD~a~a~  133 (339)
                                            .    .+.                            ++|.++|++||+++|+||+|+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g  236 (413)
T cd00610         157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG  236 (413)
T ss_pred             CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence                                  0    010                            8999999999999999999963


Q ss_pred             C-CCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHH--HHHHHhcCCCCChHHHHHHHhchhhHH-
Q 019543          134 P-VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSGLAPFDCWICLRGVKTMA-  204 (339)
Q Consensus       134 g-~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l--~~~~~~~~~~~~~~~a~~~~~~l~~~~-  204 (339)
                      . ..+..     .....|+  .|+||++++ | ...|+++++ +++++.+  .......+...++...+.+...++.+. 
T Consensus       237 ~g~~g~~~~~~~~~~~~d~--~t~sK~l~~-g-~~~g~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~  311 (413)
T cd00610         237 FGRTGKMFAFEHFGVEPDI--VTLGKGLGG-G-LPLGAVLGR-EEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE  311 (413)
T ss_pred             CCcCcchhhHhhcCCCCCe--EEEcccccC-c-cccEEEEEc-HHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence            2 12211     1123354  478899997 4 445666665 4676665  111112244566766555555555443 


Q ss_pred             -HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--------HHHHHHHccCCcc
Q 019543          205 -LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------ALSKHVVETTKYF  275 (339)
Q Consensus       205 -~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--------~~~~~~~~~L~~~  275 (339)
                       ...++.+++.+++.+.|+.....    ++. ...         ..+.|+++++.+.+.        .....|.+.|...
T Consensus       312 ~~~~~~~~~~~~~l~~~l~~~~~~----~~~-~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  377 (413)
T cd00610         312 EGLLENAAELGEYLRERLRELAEK----HPL-VGD---------VRGRGLMIGIELVKDRATKPPDKELAAKIIKAALER  377 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhh----CCc-EEE---------eecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC
Confidence             34566667777777777654210    010 000         123678999987543        4566788888776


Q ss_pred             eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      |+.+..++                           .+.+|+++...++++.++.+.++|++
T Consensus       378 gv~v~~~~---------------------------~~~lR~~~~~~~t~~~i~~~~~~l~~  411 (413)
T cd00610         378 GLLLRPSG---------------------------GNVIRLLPPLIITEEEIDEGLDALDE  411 (413)
T ss_pred             CeEEeecC---------------------------CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence            76554321                           25799999999888888888887764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.68  E-value=1.4e-14  Score=139.96  Aligned_cols=237  Identities=15%  Similarity=0.052  Sum_probs=139.6

Q ss_pred             HHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           58 DALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .+|++.+++++    |    .++.++++++++|+..++ .+++|||+|++++|.|......+.                 
T Consensus        77 ~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~  156 (409)
T PLN00143         77 LPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGW  156 (409)
T ss_pred             HHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCC
Confidence            34666666654    2    245777777789987654 588999999999999876532221                 


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---ccc-C---CCeEE
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PLE-L---GADIV  147 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~~-~---~~Di~  147 (339)
                                                          ++|+++|++||++||+|++|....+. .   ++. .   ..-|+
T Consensus       157 ~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~  236 (409)
T PLN00143        157 EVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVIT  236 (409)
T ss_pred             cCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEE
Confidence                                                88999999999999999999754321 1   111 1   12388


Q ss_pred             EeccccccccCCCceEEEEEEc-ChhHHHH---HHHHHHh--cCCCCChHHHHHHHhchh-----hHHHHHHHHHHHHHH
Q 019543          148 MHSATKFIAGHSDVMAGVLAVK-GERLAKE---LYFLQNA--EGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQK  216 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~-~~~l~~~---l~~~~~~--~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a~~  216 (339)
                      ++||||.++.+|.+ .||++++ ++.+.+.   +..+...  .....+.....++...|+     .+++.+++.+++.+.
T Consensus       237 ~~SfSK~f~~pGlR-vG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  315 (409)
T PLN00143        237 LGSISKRWMIPGWG-LGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAF  315 (409)
T ss_pred             EccchhhcCCCccc-eEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            99999999888754 5677773 3334322   2222211  122223333333333332     345566667777777


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHcc-CCcceeecccCCcccceec
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVET-TKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~-L~~~~i~v~~G~~~s~~~~  290 (339)
                      +.+.|++++.......|                ..|..+++.+...     ....+++.. ++..|+.+..|..+     
T Consensus       316 ~~~~L~~~~~~~~~~~p----------------~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f-----  374 (409)
T PLN00143        316 CYDKLKEIPCIMCPQKA----------------EGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTV-----  374 (409)
T ss_pred             HHHHHhcCCCCCCCCCC----------------CeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCcccc-----
Confidence            88888776532111111                1355677777421     123455543 36678887766432     


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHH
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKAL  334 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al  334 (339)
                                       | .++.+||+++..  ..++-+++|.+++
T Consensus       375 -----------------~-~~~~iRi~~~~~~~~l~~al~rl~~~l  402 (409)
T PLN00143        375 -----------------G-LKNWLRITFAVEQSSLEDGLGRLKSFC  402 (409)
T ss_pred             -----------------C-CCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence                             1 236799999953  1223344444444

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.68  E-value=5.3e-15  Score=140.69  Aligned_cols=238  Identities=19%  Similarity=0.182  Sum_probs=149.1

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCC-CEEEEcCCCccchHHH---------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTG-EEIVAGDDLYGGTDRL---------------  109 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~G-D~Vi~~~~~y~~~~~~---------------  109 (339)
                      ..++..+...+|++.+|+++|.+  +.++++++++++..++ .++.+| |.|+++++.|......               
T Consensus        53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~  132 (364)
T PRK04781         53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVD  132 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC
Confidence            34445566789999999999864  4666666688887655 477898 7999988876432211               


Q ss_pred             ------------HH-------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC-cc---c-CCCe
Q 019543          110 ------------LS-------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR-PL---E-LGAD  145 (339)
Q Consensus       110 ------------~~-------------------------~~I~~la~~--~g~~livD~a~a~g~~~~-~~---~-~~~D  145 (339)
                                  .+                         +++.++++.  ++++||+||++....... ..   . ..--
T Consensus       133 ~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~v  212 (364)
T PRK04781        133 GADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNL  212 (364)
T ss_pred             CccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCE
Confidence                        10                         555555554  489999999997433211 11   1 1123


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~  220 (339)
                      |++.||||+++.+|. +.||+++++ ++++.++..+..+  .++.....++...|     +....++++..++.+.+.+.
T Consensus       213 i~~~SfSK~~gl~Gl-RvGy~v~~~-~l~~~l~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~  288 (364)
T PRK04781        213 AVLRTLSKAHALAAA-RIGSLIANA-ELIAVLRRCQAPY--PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAA  288 (364)
T ss_pred             EEEecChhhcccccc-eeeeeeCCH-HHHHHHHhccCCC--CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999987664 567887764 7888777665433  33443333333333     33445566677778889999


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      |+.++++..+ +|.                .|..+++.+++.   .++.+.+...|+.+..|..+     +         
T Consensus       289 L~~~~~~~~~-~p~----------------~g~f~~~~~~~~---~~~~~~l~~~gI~v~~~~~~-----~---------  334 (364)
T PRK04781        289 LAQLPGVRRV-YPS----------------QGNFLLVRFDDA---EAAFQALLAAGVVVRDQRAA-----P---------  334 (364)
T ss_pred             HHhCCCCCeE-CCC----------------CCcEEEEEcCCH---HHHHHHHHHCCeEEeeCCCC-----C---------
Confidence            9887665323 342                466788877643   45666677778888765321     1         


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                             + .++.+||+++..+.   .+.|.+||+
T Consensus       335 -------~-~~~~~Ris~~~~~~---~~~l~~al~  358 (364)
T PRK04781        335 -------R-LSDALRITLGTPEQ---NDRVLAALQ  358 (364)
T ss_pred             -------C-CCCeEEEeCCCHHH---HHHHHHHHH
Confidence                   1 23679999996443   224444444

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.67  E-value=1.3e-14  Score=139.50  Aligned_cols=190  Identities=16%  Similarity=0.159  Sum_probs=120.8

Q ss_pred             EEEcCcHHHHHHHHH-HhcCCCCE--EEEcCCCccchHHHHH--------------------------------------
Q 019543           73 ALCFTSGMAALAAVT-HLLGTGEE--IVAGDDLYGGTDRLLS--------------------------------------  111 (339)
Q Consensus        73 ~l~~~sG~~A~~~il-~ll~~GD~--Vi~~~~~y~~~~~~~~--------------------------------------  111 (339)
                      .++++++++|+..++ .+++|||+  |++++|.|........                                      
T Consensus        93 i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~  172 (393)
T TIGR03538        93 VLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVC  172 (393)
T ss_pred             EEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEe
Confidence            455566689988655 47899996  8999988865432211                                      


Q ss_pred             ---------------HHHHHHHHHcCCEEEEeCCcCCCCCc---Ccc-------cCC-----CeEEEeccccccccCCCc
Q 019543          112 ---------------RKIAEMAHAHGALLLVDNSIMSPVLS---RPL-------ELG-----ADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 ---------------~~I~~la~~~g~~livD~a~a~g~~~---~~~-------~~~-----~Di~~~S~sK~l~g~~~~  161 (339)
                                     ++|+++|++||++||+||+|....+.   .+.       ..+     --|++.||||.++.+|. 
T Consensus       173 ~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~Gl-  251 (393)
T TIGR03538       173 SPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGL-  251 (393)
T ss_pred             CCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCccc-
Confidence                           88999999999999999999743321   110       011     13889999999887774 


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          162 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                      +.||+++++ ++++.+.......+...+......+...+.   .+....+..+++.+.+.+.|+.+  +. +..|     
T Consensus       252 RvG~~i~~~-~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~-~~~p-----  322 (393)
T TIGR03538       252 RSGFVAGDA-EILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--LD-LELP-----  322 (393)
T ss_pred             ceEEEecCH-HHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--Cc-ccCC-----
Confidence            566887764 677877766654555556554444333332   23344555566667777777654  11 1122     


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcc
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVK  285 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~  285 (339)
                                 ..|..+++.+.  ....+|++.| +..|+.+..|..+
T Consensus       323 -----------~gg~f~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f  357 (393)
T TIGR03538       323 -----------DAGFYLWPKVP--GDDEAFARALYEEENVTVLPGRFL  357 (393)
T ss_pred             -----------CeeEEEEEECC--CCHHHHHHHHHHHCCEEEeCCccc
Confidence                       13556777775  1235677766 4578888877643

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK06855 aminotransferase; Validated

Probab=99.67  E-value=2.4e-14  Score=139.23  Aligned_cols=172  Identities=19%  Similarity=0.187  Sum_probs=105.5

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHH--HH-----------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRL--LS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~--~~-----------------  111 (339)
                      .+++.+.+.+++..|    .+++++++++++|+..++.++.|||+|++++|.|++....  ..                 
T Consensus        77 ~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~  156 (433)
T PRK06855         77 ETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWY  156 (433)
T ss_pred             HHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCC
Confidence            344444444444334    3467777777999986667889999999999998754311  00                 


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cc----cCCCeE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PL----ELGADI  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~----~~~~Di  146 (339)
                                                           ++|+++|++||++||+||+|+.-.+. .   ++    .....|
T Consensus       157 ~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I  236 (433)
T PRK06855        157 PDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI  236 (433)
T ss_pred             CCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeE
Confidence                                                 88999999999999999999754331 1   11    111248


Q ss_pred             EEeccccccccCCCceEEEEEEcC----hhHHHHHHHHHHh--cCCCCChHHHHHHHhchh------hHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKG----ERLAKELYFLQNA--EGSGLAPFDCWICLRGVK------TMALRVEKQQDNA  214 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~----~~l~~~l~~~~~~--~~~~~~~~~a~~~~~~l~------~~~~r~~~~~~~a  214 (339)
                      +++||||.++.+|. +.||+++++    +.+...+......  .....+.+...++...++      .+.+.++...++.
T Consensus       237 ~~~S~SK~~~~pGl-RiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~  315 (433)
T PRK06855        237 ALKGISKELPWPGS-RCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRS  315 (433)
T ss_pred             EEecCccccCCCcc-eEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            99999999987775 456777631    2222223322221  122334444333333332      2344455566777


Q ss_pred             HHHHHHHhCCCCc
Q 019543          215 QKIAEFLASHPRV  227 (339)
Q Consensus       215 ~~l~~~L~~~~~i  227 (339)
                      +.+.+.|++++++
T Consensus       316 ~~~~~~L~~~~~~  328 (433)
T PRK06855        316 NIAYEKLKDVPGL  328 (433)
T ss_pred             HHHHHHHhcCCCe
Confidence            8888888876654

>PRK09265 aminotransferase AlaT; Validated

Probab=99.67  E-value=1.9e-14  Score=138.75  Aligned_cols=241  Identities=12%  Similarity=0.052  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhHh------CC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD------KA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~------g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ...|++.+++++      +.  +++++++++++++..++ .+++|||+|+++++.|......+.                
T Consensus        74 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~  153 (404)
T PRK09265         74 LFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAG  153 (404)
T ss_pred             cHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccC
Confidence            346777777766      32  34445554467776544 578999999999998875443221                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-cC--C-CeE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-EL--G-ADI  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~~--~-~Di  146 (339)
                                                           ++|+++|++||++||+||+|+.-.+..    .+ ..  . .-+
T Consensus       154 ~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  233 (404)
T PRK09265        154 WFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCV  233 (404)
T ss_pred             CCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEE
Confidence                                                 789999999999999999986432211    11 11  1 136


Q ss_pred             EEeccccccccCCCceEEEEEE-cChhHHHHHH-HHH--HhcCCCCChHHHHHHHhchh---hHHH---HHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAV-KGERLAKELY-FLQ--NAEGSGLAPFDCWICLRGVK---TMAL---RVEKQQDNAQK  216 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~-~~~~l~~~l~-~~~--~~~~~~~~~~~a~~~~~~l~---~~~~---r~~~~~~~a~~  216 (339)
                      +++||||.++.+|.+ .||+++ .++.+.+.+. ...  .......+.....++...|.   ....   ..++..++.+.
T Consensus       234 ~~~S~SK~~~~pGlR-iG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~  312 (404)
T PRK09265        234 TFNGLSKAYRVAGFR-VGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDR  312 (404)
T ss_pred             EEecchhhccCcccc-eEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence            789999999877755 456664 3333322221 111  11223344433333333222   2211   12345566777


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHccCCcceeecccCCcccceecc
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                      +.+.|+.+++++ +..|                ..|..+++.+.+.     .....+.+.+...|+.+..|..+.    +
T Consensus       313 ~~~~L~~~~~~~-~~~p----------------~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~----~  371 (404)
T PRK09265        313 AWELLNAIPGVS-CVKP----------------KGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFN----W  371 (404)
T ss_pred             HHHHHhcCCCCc-ccCC----------------CcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhC----C
Confidence            888888776543 2222                1345666666432     122345555667788877664321    0


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                                       ..++.+|++++.  |+.++.++.|.+++++
T Consensus       372 -----------------~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~  401 (404)
T PRK09265        372 -----------------PEPDHFRIVTLPRVDDLEEAIGRIGRFLSG  401 (404)
T ss_pred             -----------------CCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                             024679999974  3345556677766654

>PRK08354 putative aminotransferase; Provisional

Probab=99.67  E-value=8.5e-15  Score=136.32  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH------------------------
Q 019543           56 TRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~------------------------  111 (339)
                      ....|++++++++|. +.++++++++|+..++.++.+||+|++++|.|+.....++                        
T Consensus        41 ~~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~~~~  119 (311)
T PRK08354         41 YYEWLEEEFSKLFGE-PIVITAGITEALYLIGILALRDRKVIIPRHTYGEYERVARFFAARIIKGPNDPEKLEELVERNS  119 (311)
T ss_pred             ChHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHhhCCCCeEEEeCCCcHHHHHHHHHcCCEEeecCCCHHHHHHhhcCCC
Confidence            456799999999984 5777777789988665656699999999999987654333                        


Q ss_pred             --------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCceEEEEEE
Q 019543          112 --------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAV  168 (339)
Q Consensus       112 --------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~  168 (339)
                                          ++|+++|++||+++|+||+|...... ......--+++.||||.++.+|.+ .|++++
T Consensus       120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlR-iG~~v~  196 (311)
T PRK08354        120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIR-VGYVKG  196 (311)
T ss_pred             EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccce-eeeeee
Confidence                                88889999999999999999654332 111223358999999999977754 567776

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=1.1e-14  Score=138.75  Aligned_cols=203  Identities=17%  Similarity=0.159  Sum_probs=128.2

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      +....|++.+|++++.+  +.++++++.+++..++. +++|||+|+++++.|+.....+.                    
T Consensus        67 ~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~~~  146 (369)
T PRK08153         67 PENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDA  146 (369)
T ss_pred             CccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCHHH
Confidence            34679999999999853  44444445677776554 68999999999998875432211                    


Q ss_pred             ----------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC---ccc--CCCeEEEeccccccc
Q 019543          112 ----------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR---PLE--LGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------~~I~~la~~--~g~~livD~a~a~g~~~~---~~~--~~~Di~~~S~sK~l~  156 (339)
                                                  +++.++++.  +|++||+||+|+......   .+.  ..-.+++.||||.++
T Consensus       147 l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g  226 (369)
T PRK08153        147 LLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYG  226 (369)
T ss_pred             HHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhcc
Confidence                                        444444443  399999999986432211   111  112488999999998


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      .+|. +.||++++ +++++.+......  ..+++...+++...|+.   +....++.+++.+.+.+.|+.. ++.  .+|
T Consensus       227 ~~Gl-RiG~~v~~-~~~~~~l~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~--~~p  299 (369)
T PRK08153        227 LAGA-RVGYAIGA-PGTIKAFDKVRNH--FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLT--PLP  299 (369)
T ss_pred             Ccch-heeeeecC-HHHHHHHHHhhcC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCc--cCC
Confidence            7664 45788876 4677777665533  34566665555554432   3333445556677777777765 332  122


Q ss_pred             CCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCcceeecc
Q 019543          234 GLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~i~v~  280 (339)
                                      +.+..+++.++ +.+.+.++.+.|...|+.++
T Consensus       300 ----------------~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~  331 (369)
T PRK08153        300 ----------------SATNFVAIDCGRDGAFARAVLDGLIARDIFVR  331 (369)
T ss_pred             ----------------CcCcEEEEECCCCcccHHHHHHHHHHCCeEEe
Confidence                            13556777664 23456788888877788764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.67  E-value=7.4e-15  Score=138.37  Aligned_cols=232  Identities=17%  Similarity=0.119  Sum_probs=146.5

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD---RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      +.|+-.+. .+|++.+|+++|..   ++++++++++++..+..++++|| |+++.|+|......++              
T Consensus        48 ~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~~  125 (339)
T PRK06959         48 WRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPALLPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAAD  125 (339)
T ss_pred             HHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHhcCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccch
Confidence            34444555 89999999999863   45555555788876666778888 7778899887654333              


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc----cCCCeEEEeccccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~----~~~~Di~~~S~sK~l~g~~~  160 (339)
                                                 ++|++.|++++.++|+||+|........+    ...--|++.||||.+|.+|.
T Consensus       126 ~~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~Gl  205 (339)
T PRK06959        126 TLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGV  205 (339)
T ss_pred             hccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcch
Confidence                                       55556677889999999999754321111    11113888999999987664


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  237 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~  237 (339)
                       +.||++++ +++++.++..+..  +.++.....++...|+   .....+++..++.+++.+.|+++ +++.  ++    
T Consensus       206 -RiGy~v~~-~~li~~l~~~~~~--~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~--~~----  274 (339)
T PRK06959        206 -RAGFVLAA-PALLAALRDALGA--WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAV--HA----  274 (339)
T ss_pred             -heEEEecC-HHHHHHHHHhcCC--CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc--cC----
Confidence             56788876 4788888776532  3345544433433332   23444566667788888888876 2211  01    


Q ss_pred             CCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE
Q 019543          238 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  317 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis  317 (339)
                                   .+..+++.+.   .+.++.+.|...|+.++.      +  .                  ..+.+|||
T Consensus       275 -------------~~~f~~~~~~---~~~~l~~~l~~~GI~vr~------~--~------------------~~~~lRis  312 (339)
T PRK06959        275 -------------TPLFSWTDDP---RAAALHAALARRGIWTRY------F--A------------------PPPSVRFG  312 (339)
T ss_pred             -------------cceEEEEeCC---CHHHHHHHHHhCCeEEEE------C--C------------------CCCeEEEE
Confidence                         2334456554   245677888777887751      0  0                  12479999


Q ss_pred             ec-c-CCHHHHHHHHHHHHh
Q 019543          318 VG-I-EDVNDLISDLDKALR  335 (339)
Q Consensus       318 vg-~-e~~~~li~~l~~al~  335 (339)
                      ++ . ++.+.+++.|.+.++
T Consensus       313 i~~~~~e~~~l~~al~~~~~  332 (339)
T PRK06959        313 LPADEAEWQRLEDALAECVP  332 (339)
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            94 3 444666666655544

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.67  E-value=4.4e-15  Score=138.30  Aligned_cols=264  Identities=20%  Similarity=0.191  Sum_probs=169.4

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHH--h--c--CCCCEEEEcCCCccchHHHHH------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTH--L--L--GTGEEIVAGDDLYGGTDRLLS------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~--l--l--~~GD~Vi~~~~~y~~~~~~~~------  111 (339)
                      +.|+|......++.++.+|++.|++  +.+++++||.++++ +..  .  -  +.|-+||++.-..+.....++      
T Consensus        36 H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g  115 (386)
T COG1104          36 HSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQG  115 (386)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcC
Confidence            4566666778899999999999975  34445555998874 443  2  1  247899998766555432221      


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCe
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGAD  145 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~D  145 (339)
                                                                   ++|.++|+++|+++.+|.+++.|-. .+....++|
T Consensus       116 ~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD  195 (386)
T COG1104         116 FEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVD  195 (386)
T ss_pred             CeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceeccccccCcc
Confidence                                                         9999999999999999999999854 344455799


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHH----HHh-cCCCCChHHHH---HHHhchhhHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QNA-EGSGLAPFDCW---ICLRGVKTMALRVEKQQDNAQKI  217 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----~~~-~~~~~~~~~a~---~~~~~l~~~~~r~~~~~~~a~~l  217 (339)
                      ++.+|.+|..|.-|   .|+++.++......+..-    +.. .|+---|..+.   ++....+.++...++..+..+++
T Consensus       196 ~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l  272 (386)
T COG1104         196 LLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRL  272 (386)
T ss_pred             eEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999877543   366666542211111100    000 12211122222   23334566777777777788888


Q ss_pred             HHHHhCC-CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          218 AEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       218 ~~~L~~~-~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      .+.|.+. |.+.....+   .           ..-.+++.|.+.+.+ ...++-.|...||.+|.|...+--..      
T Consensus       273 ~~~l~~~~p~~~~~g~~---~-----------~rlP~~~~~~f~gv~-gE~ll~~L~~~gI~vStGSACsS~~~------  331 (386)
T COG1104         273 EDGLLEIIPDVYLNGDD---E-----------PRLPNILNFSFPGVE-GESLLLALDLAGIAVSTGSACSSGSL------  331 (386)
T ss_pred             HHHHHhcCCcEEEcCCc---c-----------cCCCCeEEEEeCCCc-HHHHHHhccccCeEEeccccccCCCC------
Confidence            8888865 654321111   0           112357777775432 34566678888999999865332211      


Q ss_pred             CCCCHHHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        .|-.....+|++    .+.||||+|..++++.++.+.+++++
T Consensus       332 --~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~  373 (386)
T COG1104         332 --EPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKE  373 (386)
T ss_pred             --CccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHH
Confidence              122456677875    36799999999999888888887764

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.67  E-value=1.1e-14  Score=138.55  Aligned_cols=210  Identities=16%  Similarity=0.159  Sum_probs=132.0

Q ss_pred             chHHHHHHHHHhHhCCC---e-EEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH--HHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD---R-ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD--RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~-~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~--~~~~----------------  111 (339)
                      ...+++++.+++++|++   . .++++||+.++.. +.+++.+||+|++..+.|.+..  ...+                
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~  116 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEP  116 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCC
Confidence            36789999999999974   2 4567888999985 4558889999988777655432  1111                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|+++|+++++|++++.|... +...+++|++++|++|++.
T Consensus       117 ~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~  196 (368)
T PRK13479        117 PDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIE  196 (368)
T ss_pred             CCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccc
Confidence                                              89999999999999999998877532 2234578999999999987


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHHHh--------------cC---CCCChHHHHH---HHhch-h--hHHHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQNA--------------EG---SGLAPFDCWI---CLRGV-K--TMALRVEKQQDN  213 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~~~--------------~~---~~~~~~~a~~---~~~~l-~--~~~~r~~~~~~~  213 (339)
                      |+.+  .|++++++ ++.+.+......              .+   .+.+....+.   ++..+ +  .++.+.++..++
T Consensus       197 g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~  273 (368)
T PRK13479        197 GVPG--FGFVIARR-SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANN  273 (368)
T ss_pred             cCCC--ceEEEECH-HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            6543  37888875 555554431100              00   1222222111   22222 1  134556677778


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccC
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G  282 (339)
                      ++++.+.|+++ ++..+ .+.     .+       + ...++.|.+...  ....++.+.|...|+.++.|
T Consensus       274 ~~~l~~~L~~~-g~~~~-~~~-----~~-------~-~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g  329 (368)
T PRK13479        274 QRTLVAGMRAL-GFEPL-LDA-----EI-------Q-SPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPG  329 (368)
T ss_pred             HHHHHHHHHHc-CCccc-CCc-----hh-------c-CceEEEEECCCCCCcCHHHHHHHHHHCCEEEecC
Confidence            88888888876 33211 110     00       1 123566655322  23457788887778887644

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.67  E-value=9.8e-15  Score=133.35  Aligned_cols=210  Identities=22%  Similarity=0.284  Sum_probs=133.1

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHH-HHHhcCCCCEEEEc-CCCccchHHHHH--------
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAA-VTHLLGTGEEIVAG-DDLYGGTDRLLS--------  111 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~-il~ll~~GD~Vi~~-~~~y~~~~~~~~--------  111 (339)
                      .+|.|+   ..-++.||+-+|+.||+|++++   |.|||+|+.+ +..+++|||+++.- ..-|+....++.        
T Consensus        47 TGYGY~---D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GS  123 (403)
T PF06838_consen   47 TGYGYD---DIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGS  123 (403)
T ss_dssp             -TT-TT----HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSS
T ss_pred             CcCCCC---CccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCC
Confidence            445555   4578999999999999999998   7899999985 56799999999863 344554443321        


Q ss_pred             ------------------------------------------------------HHHHHHHHHc--CCEEEEeCCcCCCC
Q 019543          112 ------------------------------------------------------RKIAEMAHAH--GALLLVDNSIMSPV  135 (339)
Q Consensus       112 ------------------------------------------------------~~I~~la~~~--g~~livD~a~a~g~  135 (339)
                                                                            +++++.+|+.  +++++|||+|+..+
T Consensus       124 L~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFv  203 (403)
T PF06838_consen  124 LKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFV  203 (403)
T ss_dssp             TGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT
T ss_pred             hHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceec
Confidence                                                                  5666666664  78999999999776


Q ss_pred             C-cCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh------cCCCCChHHHHHHHhchhhHHHHHH
Q 019543          136 L-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA------EGSGLAPFDCWICLRGVKTMALRVE  208 (339)
Q Consensus       136 ~-~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~------~~~~~~~~~a~~~~~~l~~~~~r~~  208 (339)
                      . ..|...|+|++++|+-|..||.-...||+|+++ ++++++.......      .|.++..  .....++|=-.+.-..
T Consensus       204 E~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr-~~lVe~~a~RLTaPGiG~e~G~t~~~--~R~~~QGlFlAP~vV~  280 (403)
T PF06838_consen  204 ETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGR-KDLVERAAYRLTAPGIGKEVGATLGT--NRLMFQGLFLAPHVVG  280 (403)
T ss_dssp             SSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEES-HHHHHHHHHHHS-TTTGGGSS--TTT--HHHHHHHHHHHHHHHH
T ss_pred             cccCccccchhheeccceeCCCCCccCcCCEEech-HHHHHHHHhhhcCCccccccccCcch--HHHHHhHHhhchHHHH
Confidence            5 467888999999999999998877789999987 4788877654321      2222221  2234444444455556


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  274 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~  274 (339)
                      +..+.+...+..++.+. .+ | .|... .+         + .--|.++.+++++...+|++.++.
T Consensus       281 eAlKgaif~A~~fe~lG-~~-v-~P~~~-~~---------R-~DiIQai~l~~~e~l~~FC~~iQ~  332 (403)
T PF06838_consen  281 EALKGAIFAAALFEKLG-FE-V-SPKPD-DP---------R-SDIIQAIELGSPEKLIAFCQGIQA  332 (403)
T ss_dssp             HHHHHHHHHHHHHHHTT--E-E-ES-TT-S------------SSS-EEEE-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC-Cc-C-CCCCC-CC---------C-CceEEEEECCCHHHHHHHHHHHHh
Confidence            66666777777777664 22 2 23211 11         1 234778889999999999998765

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.67  E-value=7.5e-15  Score=139.18  Aligned_cols=232  Identities=17%  Similarity=0.170  Sum_probs=148.3

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcH-HHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSG-MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG-~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      +...+|++.+++++|..  ..+++++| ++++..++ .+++|||+|+++++.|.......+                   
T Consensus        63 ~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~  142 (356)
T PRK04870         63 PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDL  142 (356)
T ss_pred             CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCH
Confidence            44678999999999853  24555555 67777655 477999999999998876543322                   


Q ss_pred             ------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc-cCCCeEEEecccccccc
Q 019543          112 ------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL-ELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~-~~~~Di~~~S~sK~l~g  157 (339)
                                                    +++.++++..++++|+|+++.......   .+ ...-.+++.|||| ++.
T Consensus       143 ~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~  221 (356)
T PRK04870        143 PAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGL  221 (356)
T ss_pred             HHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhh
Confidence                                          666666666688999999985322111   11 1123588999999 776


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCC
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC---LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAG  234 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~---~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~  234 (339)
                      +|. +.|++++++ ++++.++..+.  .+.++....+++   +...+.++..+++..++.+.+.+.|+.++++. + +|.
T Consensus       222 ~Gl-RiG~~i~~~-~~i~~~~~~~~--~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~-~~~  295 (356)
T PRK04870        222 AGL-RLGYLAGHP-AWIAELDKVRP--PYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVT-V-FPS  295 (356)
T ss_pred             HHH-hhhhhhCCH-HHHHHHHHccC--CCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE-E-CCC
Confidence            664 456887764 67777665442  233444433332   23333455556677788888888898877653 2 331


Q ss_pred             CCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeE
Q 019543          235 LPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLV  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~l  314 (339)
                                      .++.+++.+++   ..++.+.|++.|+.+..|..+.    +                 ..++.+
T Consensus       296 ----------------~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~~~f~----~-----------------~~~~~i  335 (356)
T PRK04870        296 ----------------AANFILVRVPD---AAAVFDGLKTRGVLVKNLSGMH----P-----------------LLANCL  335 (356)
T ss_pred             ----------------CCeEEEEECCC---HHHHHHHHHHCCEEEEECCCCC----C-----------------CCCCeE
Confidence                            35678888763   3456777777888887554221    1                 124689


Q ss_pred             EEEeccCCHHHHHHHHHHHHhc
Q 019543          315 RISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       315 Risvg~e~~~~li~~l~~al~~  336 (339)
                      |||++.   .+..+.|.+||++
T Consensus       336 Ris~~~---~~~~~~l~~al~~  354 (356)
T PRK04870        336 RVTVGT---PEENAQFLAALKA  354 (356)
T ss_pred             EEeCCC---HHHHHHHHHHHHH
Confidence            999995   3344567777664

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.66  E-value=5.1e-14  Score=138.76  Aligned_cols=170  Identities=12%  Similarity=0.127  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-Hhc-CCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLL-GTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll-~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |    .+++++++++++|+..++ .++ +|||+|++++|.|......++               
T Consensus       117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~  196 (481)
T PTZ00377        117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEK  196 (481)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEecccc
Confidence            345555555554    3    346777777789998655 466 799999999998865432211               


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c-Ccc-----
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S-RPL-----  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~-~~~-----  140 (339)
                                                                  ++|+++|++||++||+||+|....+ . .+.     
T Consensus       197 ~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~  276 (481)
T PTZ00377        197 GWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRK  276 (481)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHH
Confidence                                                        8899999999999999999975332 1 110     


Q ss_pred             ---cCC-------CeEEEecccccc-ccCCCceEEEEEE--cChhHHHHHHHHHHhcCCCCChHHHHHHHhchh------
Q 019543          141 ---ELG-------ADIVMHSATKFI-AGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------  201 (339)
Q Consensus       141 ---~~~-------~Di~~~S~sK~l-~g~~~~~gG~v~~--~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~------  201 (339)
                         ...       --|+++||||.+ +.+|. +.||+++  .++++++.+...... ..+.+.....++...++      
T Consensus       277 ~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl-RiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~  354 (481)
T PTZ00377        277 VLLELPAEYNTDVELVSFHSTSKGIIGECGR-RGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQLMTGLMCNPPREGD  354 (481)
T ss_pred             HHHhhcccccCCeEEEEEecCCcccccCCcC-ceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHHHHHHHhCCCCCCc
Confidence               111       127889999985 54554 5667765  245788888776542 22344433333322221      


Q ss_pred             ----hH----HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          202 ----TM----ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       202 ----~~----~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                          ..    ....++..++.+.+.+.|+.+++++
T Consensus       355 ~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~  389 (481)
T PTZ00377        355 ASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVS  389 (481)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence                12    1222234667778888998887654

>PRK05839 hypothetical protein; Provisional

Probab=99.65  E-value=2.3e-14  Score=136.85  Aligned_cols=219  Identities=15%  Similarity=0.096  Sum_probs=132.3

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchHHHHH----------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+++++.+.+++.+|    .+++++++++++|+..++. ++  ++||.|+++.|.|......+.                
T Consensus        64 ~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~  143 (374)
T PRK05839         64 SLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKEND  143 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccC
Confidence            455666666666655    3456666666888875543 43  589999999998876543222                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----cc---------CCC
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----LE---------LGA  144 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~~---------~~~  144 (339)
                                                        ++|+++|++||++||+||+|+.-....+    ..         ..-
T Consensus       144 ~~~d~~~~~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~  223 (374)
T PRK05839        144 FTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKN  223 (374)
T ss_pred             CcCCcchhhhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCc
Confidence                                              8899999999999999999874221111    11         012


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L  221 (339)
                      -|++.||||.++.+| .+.||++++ +++.+.++......+...+......+...+   +.++...++..++.+.+.+.|
T Consensus       224 vi~~~SfSK~~~~~G-lRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  301 (374)
T PRK05839        224 VLVINSISKRSSAPG-LRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL  301 (374)
T ss_pred             EEEEeccccccCCcc-ceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc
Confidence            388899999998777 456788776 467787776654444444433322222222   223333444455555555544


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      .    +.   .|                ..|..+++.+.+.   .+|++.|. ..|+.+..|..+.   .+         
T Consensus       302 ~----~~---~p----------------~gg~fi~~~~~~~---~~~~~~l~~~~gi~v~pg~~f~---~~---------  343 (374)
T PRK05839        302 G----IT---IP----------------PATFYVWLPVDND---EEFTKKLYQNEGIKVLPGSFLG---RN---------  343 (374)
T ss_pred             C----CC---CC----------------CeeEEEEEeCCCh---HHHHHHHHHHCCEEEeCchhhC---CC---------
Confidence            2    11   22                1356777777533   45666664 4788877664321   00         


Q ss_pred             HHHHHhCCCCCCeEEEEecc
Q 019543          301 VEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~  320 (339)
                             +..++.+|||++.
T Consensus       344 -------~~~~~~iRis~~~  356 (374)
T PRK05839        344 -------GIGKGYVRIALVY  356 (374)
T ss_pred             -------CCCCCeEEEEecC
Confidence                   1135789999985

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.65  E-value=4e-15  Score=140.09  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc-c-----c-CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP-L-----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE  184 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~-~-----~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~  184 (339)
                      ++|+++|++||+++++|++|+.+..... .     . .++|++++|++|+++++.  ..|+++.+               
T Consensus       168 ~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~---------------  230 (345)
T cd06450         168 EEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR---------------  230 (345)
T ss_pred             HHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH---------------
Confidence            9999999999999999999987653211 0     1 267999999999987553  24555433               


Q ss_pred             CCCCChHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-
Q 019543          185 GSGLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-  261 (339)
Q Consensus       185 ~~~~~~~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-  261 (339)
                           ....+.++..+  +.++.++++..++++++.+.|++++++..+..|                 .++++.|.+.+ 
T Consensus       231 -----~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~iv~f~~~~~  288 (345)
T cd06450         231 -----ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-----------------NLSLVCFRLKPS  288 (345)
T ss_pred             -----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------ceeEEEEEECCc
Confidence                 11112222222  345667778888999999999998876533211                 35789998765 


Q ss_pred             ---HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC-HHHHHHHHHHHHhcC
Q 019543          262 ---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRTG  337 (339)
Q Consensus       262 ---~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~-~~~li~~l~~al~~~  337 (339)
                         .....++.+.|...|+.+..+.     ..+                  .+..+|+|++..+ +++.++.+.++|+++
T Consensus       289 ~~~~~~~~~i~~~L~~~g~~~~~~~-----~~~------------------~~~~lRis~~~~~~t~~di~~l~~~l~~~  345 (345)
T cd06450         289 VKLDELNYDLSDRLNERGGWHVPAT-----TLG------------------GPNVLRFVVTNPLTTRDDADALLEDIERA  345 (345)
T ss_pred             chhhHHHHHHHHHHHhcCCEEEEee-----EEC------------------CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence               2345677777766543221110     000                  2467999999875 888889999988763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.65  E-value=2.4e-14  Score=139.69  Aligned_cols=174  Identities=21%  Similarity=0.191  Sum_probs=116.9

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHH------------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDR------------------  108 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~------------------  108 (339)
                      .|+  .++...+||++++++++.+++++++||++|+.+ +.++++||| |+++++.|..+..                  
T Consensus        73 ~Y~--~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~  149 (460)
T PRK13238         73 AYA--GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEAL  149 (460)
T ss_pred             ccC--CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccc
Confidence            355  567788999999999999999999999999985 445899999 8887765432210                  


Q ss_pred             -------------------HH------H-----------------------HHHHHHHHHcCCEEEEeCCcCCC------
Q 019543          109 -------------------LL------S-----------------------RKIAEMAHAHGALLLVDNSIMSP------  134 (339)
Q Consensus       109 -------------------~~------~-----------------------~~I~~la~~~g~~livD~a~a~g------  134 (339)
                                         .+      +                       ++|.++|++||++||+|+++..+      
T Consensus       150 ~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~  229 (460)
T PRK13238        150 DTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIK  229 (460)
T ss_pred             cccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhh
Confidence                               00      0                       68999999999999999988431      


Q ss_pred             -----CCcCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH----h-cCCCCChHHHHHHH
Q 019543          135 -----VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN----A-EGSGLAPFDCWICL  197 (339)
Q Consensus       135 -----~~~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~----~-~~~~~~~~~a~~~~  197 (339)
                           +....+       ...+|+++.|..|.+.++   .||+++++++++.++++....    . +-.+++......+.
T Consensus       230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala  306 (460)
T PRK13238        230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALA  306 (460)
T ss_pred             hccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHH
Confidence                 111111       124699999999987643   489999887678887766531    1 11233444233333


Q ss_pred             hchhh-H-HHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          198 RGVKT-M-ALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       198 ~~l~~-~-~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      .+|+. . +...+.+.++.++|.+.|++. ++.
T Consensus       307 ~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~~  338 (460)
T PRK13238        307 VGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GVP  338 (460)
T ss_pred             hhHHHhhChHHHHHHHHHHHHHHHHHHHC-CCC
Confidence            33333 1 234444455678899999875 554

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=1.5e-14  Score=137.09  Aligned_cols=237  Identities=14%  Similarity=0.094  Sum_probs=149.2

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hcCCC-CEEEEcCCCccchHHHHH-------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LLGTG-EEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll~~G-D~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +.|+..+...+|++.+|+++|.+  +.++++++++++..++. +++|| |+|++++|.|.......+             
T Consensus        54 ~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~  133 (354)
T PRK04635         54 LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA  133 (354)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC
Confidence            34444556789999999999864  56666666888886554 77898 999999998875432221             


Q ss_pred             ---------------------------------HHHHHHHHHc-CCEEEEeCCcCCCCCcCc-c---c-CCCeEEEeccc
Q 019543          112 ---------------------------------RKIAEMAHAH-GALLLVDNSIMSPVLSRP-L---E-LGADIVMHSAT  152 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~-g~~livD~a~a~g~~~~~-~---~-~~~Di~~~S~s  152 (339)
                                                       +++.++++.. +++||+|++|........ .   . ..--+++.|||
T Consensus       134 ~~~~~~~~l~~~~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~S  213 (354)
T PRK04635        134 DYQLPLDYIEQLDGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLS  213 (354)
T ss_pred             CCCCCHHHHHhccCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEechH
Confidence                                             7777887763 799999999864321111 1   1 11137889999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG-----VKTMALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~-----l~~~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      |+++.+|. +.|++++++ ++++.+.....  ...++......+...     .+.+..+.++..++.+++.+.|++++++
T Consensus       214 K~~~l~Gl-RlG~~i~~~-~~~~~l~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  289 (354)
T PRK04635        214 KAFALAGA-RCGFTLANE-ELIEILMRVIA--PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGA  289 (354)
T ss_pred             HHhhhhHH-HHhhhhCCH-HHHHHHHhhcC--CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99986664 456877764 67777654332  233343332223222     3344555666777788888999887654


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                      + + +|.                .+..+++.+.+.   .++.+.|.+.|+.++.+..      +                
T Consensus       290 ~-~-~~~----------------~g~f~~~~~~~~---~~~~~~l~~~gv~v~~~~~------~----------------  326 (354)
T PRK04635        290 K-V-LEG----------------NGNYVLAKFDDV---DAVFKALWDAGIVARAYKD------P----------------  326 (354)
T ss_pred             e-E-CCC----------------CCcEEEEECCCH---HHHHHHHHHCCEEEEECCC------C----------------
Confidence            3 2 331                345666666533   3556666677887753210      0                


Q ss_pred             CCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          308 GLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       308 g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       -.++.+|||++.   ++.++.|.++|++
T Consensus       327 -~~~~~lRis~~~---~e~~~~l~~al~~  351 (354)
T PRK04635        327 -RLANCIRFSFSN---RAETDKLIGLIRN  351 (354)
T ss_pred             -CCCCeEEEEeCC---HHHHHHHHHHHHH
Confidence             023679999984   3455677777764

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.64  E-value=3.8e-14  Score=134.58  Aligned_cols=232  Identities=15%  Similarity=0.101  Sum_probs=146.5

Q ss_pred             chHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      +...+|++.+|++++.  +++++++++++++..++..+.+||.|++++|.|......++                     
T Consensus        57 ~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  136 (360)
T PRK07392         57 PDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLT  136 (360)
T ss_pred             cCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccc
Confidence            3456899999999864  45777777789998766545688999999998865442221                     


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c-c---c-CCCeEEEeccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P-L---E-LGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~-~---~-~~~Di~~~S~s  152 (339)
                                                     ++|.++++++++ +|+||+|.......   . .   . ..--|++.|||
T Consensus       137 ~~~~~~~~~~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~S  215 (360)
T PRK07392        137 LRLQTLPPQLTPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLT  215 (360)
T ss_pred             cCHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEech
Confidence                                           889999999986 66699986432211   1 1   1 11238889999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+|. +.||+++++ ++++.+...+  .....+.+...++...++.   .....+...++.+++.+.|+.++++..
T Consensus       216 K~~~l~Gl-RiG~~v~~~-~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~  291 (360)
T PRK07392        216 KFYSLPGL-RLGYAIAHP-DRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTP  291 (360)
T ss_pred             hhhcCCch-heeeeeCCH-HHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            99997664 567887764 6666665433  2345566655555444433   222234455667788888887766532


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                        +|                +.+..+++.+..  ...++++.+ +..|+.+..|..+.    .                 
T Consensus       292 --~~----------------~~~~fl~~~~~~--~~~~l~~~ll~~~gv~v~pg~~f~----~-----------------  330 (360)
T PRK07392        292 --LP----------------SAANFLLVQSQG--SALQLQEKLLQQHRILIRDCLSFP----E-----------------  330 (360)
T ss_pred             --CC----------------CCCCEEEEEcCC--CHHHHHHHHHhhCCEEEEeCCCCC----C-----------------
Confidence              22                134556666543  345666664 56688877664321    0                 


Q ss_pred             CCCCeEEEEeccCC-HHHHHHHHHH
Q 019543          309 LTEDLVRISVGIED-VNDLISDLDK  332 (339)
Q Consensus       309 ~~~~~lRisvg~e~-~~~li~~l~~  332 (339)
                      ..++.+||+++... .+.+.+.|.+
T Consensus       331 ~~~~~iRi~~~~~~~~~~l~~al~~  355 (360)
T PRK07392        331 LGDRYFRVAVRTEAENQRLLEALAA  355 (360)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            13468999999854 3444444443

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.64  E-value=5.2e-14  Score=135.33  Aligned_cols=236  Identities=14%  Similarity=0.116  Sum_probs=142.4

Q ss_pred             chHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      .....+++.++++++        .++.++++++++++..++ .++++||+|+++++.|.+....++              
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~  152 (394)
T PRK06836         73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD  152 (394)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc
Confidence            345566677776653        346777777789987654 578999999999998876553322              


Q ss_pred             --------------------------------------HHHHHHHHH------cCCEEEEeCCcCCCCCc-Cc----c-c
Q 019543          112 --------------------------------------RKIAEMAHA------HGALLLVDNSIMSPVLS-RP----L-E  141 (339)
Q Consensus       112 --------------------------------------~~I~~la~~------~g~~livD~a~a~g~~~-~~----~-~  141 (339)
                                                            ++|+++|++      ||+++|+|+++....+. ..    . .
T Consensus       153 ~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~  232 (394)
T PRK06836        153 TFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKY  232 (394)
T ss_pred             cCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHc
Confidence                                                  889999999      89999999999643221 11    1 1


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHH---HHH---HHHhcC-CCCChHHHHHHHhchhhHHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE---LYF---LQNAEG-SGLAPFDCWICLRGVKTMALRVEKQQDNA  214 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~---l~~---~~~~~~-~~~~~~~a~~~~~~l~~~~~r~~~~~~~a  214 (339)
                      ..-.++++|+||.++.+| .+.|++++++ .+.+.   +..   ..+..+ ...++.....+...++.- .+.++..++.
T Consensus       233 ~~~~i~~~S~SK~~~~pG-lRiG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~r  309 (394)
T PRK06836        233 YDNSIVVYSFSKSLSLPG-ERIGYIAVNP-EMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSIYKRNR  309 (394)
T ss_pred             cCcEEEEecchhhccCcc-eeeEEEecCH-HHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHHHHHHH
Confidence            223689999999999766 4567777764 34322   111   111122 234444433333333331 2344555667


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +.+.+.|+.+ +++ +..|                ..|..+++.++. ....++++.|...|+.+..|..+.        
T Consensus       310 ~~l~~~L~~~-g~~-~~~~----------------~gg~~~~~~~~~-~~~~~~~~~l~~~gv~v~~g~~f~--------  362 (394)
T PRK06836        310 DLLYDGLTEL-GFE-CVKP----------------QGAFYLFPKSPE-EDDVAFCEKAKKHNLLLVPGSGFG--------  362 (394)
T ss_pred             HHHHHHHHhC-CCE-eecC----------------CceEEEEEeCCC-CCHHHHHHHHHhCCEEEECchhcC--------
Confidence            7788888776 332 2222                124456665643 234567777777788777654321        


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHH---HHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVN---DLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~---~li~~l~~al~~  336 (339)
                                     .++.+||+++. +.+   +-++.|.+++++
T Consensus       363 ---------------~~~~iRi~~~~-~~~~~~~~i~~l~~~l~~  391 (394)
T PRK06836        363 ---------------CPGYFRLSYCV-DTETIERSLPAFEKLAKE  391 (394)
T ss_pred             ---------------CCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence                           12579999984 332   335556665543

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=9e-15  Score=138.46  Aligned_cols=238  Identities=15%  Similarity=0.138  Sum_probs=149.6

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCC-CEEEEcCCCccchHHHHH-------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTG-EEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~G-D~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      .+|+..+...+|++.+++++|.+  ++++++++++++..++ .++++| |+|++++|.|.......+             
T Consensus        51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~  130 (351)
T PRK01688         51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD  130 (351)
T ss_pred             cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC
Confidence            44555566789999999999854  5666666688987655 477887 999999998865443222             


Q ss_pred             ----------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-Cc---cc-CCCeEEEec
Q 019543          112 ----------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RP---LE-LGADIVMHS  150 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~---~~-~~~Di~~~S  150 (339)
                                                        ++|.++++..  +.+||+||+|...... ..   .. ..--+++.|
T Consensus       131 ~~~~d~~~l~~~~~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        131 NWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT  210 (351)
T ss_pred             CCCCCHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence                                              4555554432  6899999999643311 11   11 122488899


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      |||++|.+| .+.|++++++ ++++.++..+..  +.++......+...|     +.+..++++..++.+++.+.|+.++
T Consensus       211 fSK~~glaG-lRiGy~i~~~-~~i~~l~~~~~~--~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  286 (351)
T PRK01688        211 LSKAFALAG-LRCGFTLANE-EVINLLLKVIAP--YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIP  286 (351)
T ss_pred             chHhhcCHH-HHHhHHhCCH-HHHHHHHhccCC--CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999998655 4456777764 677777654322  233433322332333     3445556666777888999998877


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      ++.. .+|.                .+..+++.+.+   ..++.+.|...|+.++.++.     .+              
T Consensus       287 ~~~~-~~ps----------------~~nfi~~~~~~---~~~l~~~L~~~gi~vr~~~~-----~~--------------  327 (351)
T PRK01688        287 CVEQ-VFDS----------------ETNYILARFTA---SSAVFKSLWDQGIILRDQNK-----QP--------------  327 (351)
T ss_pred             CCCe-ECCC----------------CCcEEEEEcCC---HHHHHHHHHHCCeEEEECCC-----cC--------------
Confidence            6532 2342                35566676653   35677777777888774321     01              


Q ss_pred             hCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          306 ARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                        | .++.+|||+|.   ++..+.|.++|+
T Consensus       328 --~-~~~~iRis~~~---~~e~~~l~~al~  351 (351)
T PRK01688        328 --G-LSNCLRITIGT---REECQRVIDALR  351 (351)
T ss_pred             --C-CCCeEEEeCCC---HHHHHHHHHhhC
Confidence              1 23679999994   345567777663

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.64  E-value=3.2e-14  Score=139.55  Aligned_cols=237  Identities=13%  Similarity=0.116  Sum_probs=143.6

Q ss_pred             HHHHHHHHhHh----C------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           58 DALESLLAKLD----K------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        58 ~~le~~la~~~----g------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      .+|++.+|+++    |      .+++++++++++++..++ .+++|||.|++++|.|.+....+.               
T Consensus        89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~  168 (468)
T PLN02450         89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSS  168 (468)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCc
Confidence            34666666654    2      235666666688887544 588999999999998865422110               


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----ccc
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PLE  141 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~~  141 (339)
                                                                   ++|+++|++||++||+||+|+.-.+..     .+.
T Consensus       169 ~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~  248 (468)
T PLN02450        169 NGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVME  248 (468)
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHH
Confidence                                                         789999999999999999997432211     111


Q ss_pred             ------------CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-------h
Q 019543          142 ------------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------T  202 (339)
Q Consensus       142 ------------~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-------~  202 (339)
                                  ..--+++.||||.++.+| .+.|+++++++.+.+.+.... .++ ..+.....++...|+       .
T Consensus       249 ~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~-~~~-~~s~~~Q~a~~~~L~~~~~~~~~  325 (468)
T PLN02450        249 VLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMS-SFG-LVSSQTQYLLSALLSDKKFTKNY  325 (468)
T ss_pred             HhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHh-hcC-CCCHHHHHHHHHHhCCchhHHHH
Confidence                        112378899999998766 456788887655555554443 233 234443333333332       2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCH------HHHHHHHccC-Cc
Q 019543          203 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL------ALSKHVVETT-KY  274 (339)
Q Consensus       203 ~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~------~~~~~~~~~L-~~  274 (339)
                      +...+++..+..+.+.+.|+.+ ++..  ++                ..++ .+++.+...      +...++.+.| +.
T Consensus       326 l~~~~~~l~~rr~~l~~~L~~~-gi~~--~~----------------~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~  386 (468)
T PLN02450        326 LEENQKRLKQRQKKLVSGLEAA-GIKC--LK----------------SNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYE  386 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCcc--cC----------------CCceEEEEEEchHhcCcCCchHHHHHHHHHHHh
Confidence            3445666677777888888876 4321  11                1234 667766421      1223455554 45


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC---HHHHHHHHHHHHhcC
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED---VNDLISDLDKALRTG  337 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~---~~~li~~l~~al~~~  337 (339)
                      .|+.+..|..+.    +                 ..++.+||+++..+   .++-++.|.+++++.
T Consensus       387 ~gV~v~PG~~f~----~-----------------~~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        387 VKLNISPGSSCH----C-----------------TEPGWFRVCFANMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             CCEEEeCccccC----C-----------------CCCCEEEEEecCCCHHHHHHHHHHHHHHHHhc
Confidence            688887775321    1                 13478999999522   344466676666544

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.64  E-value=7.1e-14  Score=137.81  Aligned_cols=222  Identities=13%  Similarity=0.095  Sum_probs=133.0

Q ss_pred             CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH--------------------------------------
Q 019543           71 DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------  111 (339)
Q Consensus        71 ~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------  111 (339)
                      ++.++++++++|+..+ ..+++|||.|++++|.|++....+.                                      
T Consensus       120 e~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~  199 (496)
T PLN02376        120 ERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKK  199 (496)
T ss_pred             hhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCC
Confidence            4566777778999854 4589999999999998876542111                                      


Q ss_pred             ----------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-cC---------CCe--EEEecccc
Q 019543          112 ----------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-EL---------GAD--IVMHSATK  153 (339)
Q Consensus       112 ----------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~~---------~~D--i~~~S~sK  153 (339)
                                            ++|+++|++||+.||+||+|+..++..    .+ ..         ..+  +++.||||
T Consensus       200 ~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK  279 (496)
T PLN02376        200 VKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSK  279 (496)
T ss_pred             eeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccc
Confidence                                  789999999999999999997543311    10 01         112  45799999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      .+|.+|. +.|++++.++.+.+.++... .++ ..+.....++...|+.       +....+++.++.+.+.+.|++. +
T Consensus       280 ~~glpGl-RvG~li~~~~~l~~~~~~~~-~~~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-g  355 (496)
T PLN02376        280 DMGLPGF-RVGIVYSFNDSVVSCARKMS-SFG-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-D  355 (496)
T ss_pred             cCCCCcc-eEEEEEECCHHHHHHHHHHh-hcC-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            9987774 56788886656655554443 233 2444444433333321       1222444556666777777764 3


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-------HHHHHHHccC-CcceeecccCCcccceeccccccCCC
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-------ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-------~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      +..  .+               ...|..+|+.+...       +...+|++.+ +..|+.++.|..+    ++       
T Consensus       356 i~~--~~---------------~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F----~~-------  407 (496)
T PLN02376        356 IAC--LT---------------SNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSF----RC-------  407 (496)
T ss_pred             Ccc--cC---------------CCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCcccc----CC-------
Confidence            321  11               11356777777421       1224566655 3458888877532    11       


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHH---HHHHHHHHH
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVND---LISDLDKAL  334 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~---li~~l~~al  334 (339)
                                -.++.+||+++..+.+.   -+++|.+++
T Consensus       408 ----------~~~g~~Ri~fa~~~~~~l~~al~rl~~~l  436 (496)
T PLN02376        408 ----------TEPGWFRICFANMDDDTLHVALGRIQDFV  436 (496)
T ss_pred             ----------CCCCEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence                      02468999999633333   344454444

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.64  E-value=2.9e-14  Score=137.42  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=149.5

Q ss_pred             CchHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchH--HHH-----------------
Q 019543           54 NPTRDALESLLAKLDKAD---RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTD--RLL-----------------  110 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~--~~~-----------------  110 (339)
                      ....+++++.+++++|.+   .+++.++|+.++.++ ..+++|||+|+++++.|.+..  ...                 
T Consensus        41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~  120 (401)
T PLN02409         41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQG  120 (401)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCC
Confidence            457789999999999874   356777778888754 458899999999987654332  110                 


Q ss_pred             ----------------H-------------------HHHHHH--HHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccc
Q 019543          111 ----------------S-------------------RKIAEM--AHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  152 (339)
Q Consensus       111 ----------------~-------------------~~I~~l--a~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~s  152 (339)
                                      +                   ++|.++  |+++|+++++|++++.|... +...+++|++++|.+
T Consensus       121 ~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~  200 (401)
T PLN02409        121 ADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQ  200 (401)
T ss_pred             CCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCc
Confidence                            1                   889999  99999999999999877542 334568999999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHH------------Hh--cC---CCCChHHHH-HHHhchhh-----HHHHHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQ------------NA--EG---SGLAPFDCW-ICLRGVKT-----MALRVEK  209 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~------------~~--~~---~~~~~~~a~-~~~~~l~~-----~~~r~~~  209 (339)
                      |+++++.+  .|+++.++ +..+++....            +.  .+   ...++.... .+..+++.     ++.+.++
T Consensus       201 K~l~~P~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~  277 (401)
T PLN02409        201 KALSLPTG--LGIVCASP-KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIAR  277 (401)
T ss_pred             cccCcCCC--cceeEECH-HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99987653  57888775 5666654210            01  11   112222222 22223332     3445566


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccce
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLI  288 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~  288 (339)
                      ..+.++++.+.|+.. +++.+. |.    +.        .....+++|.+.+.....++.+.| +.+++.+..|..    
T Consensus       278 ~~~l~~~l~~~L~~~-g~~~~~-~~----~~--------~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~----  339 (401)
T PLN02409        278 HARLGEATRLAVEAW-GLKLCT-KK----PE--------WRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLN----  339 (401)
T ss_pred             HHHHHHHHHHHHHHc-CCeecc-CC----hh--------hcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCC----
Confidence            677788888888765 443221 21    00        002346667664332334555554 456776665431    


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                        +                 .....+|||...+..++.+..+.+||+
T Consensus       340 --~-----------------~~~~~~Rig~~g~~~~~~~~~~~~~~~  367 (401)
T PLN02409        340 --K-----------------VAGKVFRIGHLGNVNELQLLGALAGVE  367 (401)
T ss_pred             --c-----------------ccCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence              1                 134679999977665554444444443

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.64  E-value=2.3e-14  Score=136.65  Aligned_cols=229  Identities=17%  Similarity=0.175  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      .-.+|++.+++++|.+  +.++++++++++..++ .++++||+|+++.+.|+.....++                     
T Consensus        72 ~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~  151 (371)
T PRK05166         72 QGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDA  151 (371)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHH
Confidence            3358999999999864  4555555578887554 478999999999998875543222                     


Q ss_pred             ---------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC---c----cc-CC-CeEEEecccc
Q 019543          112 ---------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR---P----LE-LG-ADIVMHSATK  153 (339)
Q Consensus       112 ---------------------------~~I~~la~~--~g~~livD~a~a~g~~~~---~----~~-~~-~Di~~~S~sK  153 (339)
                                                 +++.++++.  .++++|+|++|.......   .    .. .. --|++.||||
T Consensus       152 l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK  231 (371)
T PRK05166        152 LCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSK  231 (371)
T ss_pred             HHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechH
Confidence                                       444444443  488999999996433211   1    11 11 2488999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      .++.+|. +.||++++++++.+.+...+.  ....+.+...++...+   +.++..++...++.+++.+.|+.+ ++. +
T Consensus       232 ~~~l~Gl-RiG~~i~~~~~l~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~  306 (371)
T PRK05166        232 AYGLAGL-RVGYGLVSDPELVGLLDRVRT--PFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYR-I  306 (371)
T ss_pred             hhhcchh-heeeeecCCHHHHHHHHHhcc--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCe-e
Confidence            9987664 566876655677777765442  2334544433333322   234444556667778888888876 342 2


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                       +|.                .|..+++.+..  ...+|++.|...|+.+..|..      +                + .
T Consensus       307 -~p~----------------~g~fl~~~~~~--~~~~l~~~l~~~gi~v~p~~~------~----------------~-~  344 (371)
T PRK05166        307 -APS----------------RANFLFFDARR--PASAVAEALLRQGVIVKPWKQ------P----------------G-F  344 (371)
T ss_pred             -CCC----------------cCCEEEEeCCC--CHHHHHHHHHHCCeEEecCCC------C----------------C-C
Confidence             231                35567776642  235677777666887765421      1                0 2


Q ss_pred             CCeEEEEeccCC-HHHHHHHHH
Q 019543          311 EDLVRISVGIED-VNDLISDLD  331 (339)
Q Consensus       311 ~~~lRisvg~e~-~~~li~~l~  331 (339)
                      ++.+|||++..+ .+.+++.|.
T Consensus       345 ~~~iRi~~~~~~~~~~l~~~l~  366 (371)
T PRK05166        345 ETFIRVSIGSPEENDHFVAALD  366 (371)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH
Confidence            478999999654 344444433

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.64  E-value=2.6e-14  Score=135.32  Aligned_cols=235  Identities=17%  Similarity=0.129  Sum_probs=141.4

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc----CCC-CEEEEcCCCccchHHHH---H------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL----GTG-EEIVAGDDLYGGTDRLL---S------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll----~~G-D~Vi~~~~~y~~~~~~~---~------------  111 (339)
                      ...+++++++++++|.+  ++++++|++.|+..++ .+.    ++| |+|+++...++.....+   .            
T Consensus        42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~  121 (353)
T TIGR03235        42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD  121 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccC
Confidence            45789999999999975  4555555578887544 343    366 78888765444322111   0            


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKF  154 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~  154 (339)
                                                          ++|.++|+++|+++++|++|+.|... +....++|++++|++|+
T Consensus       122 ~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~  201 (353)
T TIGR03235       122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKI  201 (353)
T ss_pred             CCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhc
Confidence                                                99999999999999999999988653 33346799999999998


Q ss_pred             cccCCCceEEEEEEcChhHHHH--HHHH-------HHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKE--LYFL-------QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~--l~~~-------~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L  221 (339)
                      ++.+|   .|+++.+++ ....  +...       ++....+.+....+.+..+++    ..+.+.++++++++++.+.|
T Consensus       202 ~gp~g---~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l  277 (353)
T TIGR03235       202 YGPKG---IGALVIRKR-GKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDAL  277 (353)
T ss_pred             CCCCc---eEEEEEccC-cccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            75332   477777753 2211  1110       011112222222111222222    34556677778888888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      +. ++++.+.-|.              ....++++|.+.+. ....+.+.|+. ++.++.|...      .....  .+.
T Consensus       278 ~~-~g~~~~~~~~--------------~~~~~i~~~~~~~~-~~~~v~~~L~~-~i~v~~g~~~------~~~~~--~~~  332 (353)
T TIGR03235       278 QT-LGVKLNGDPA--------------ETIPHILNFSIDGV-NSEALIVNLRA-DAAVSTGSAC------SSSKY--EPS  332 (353)
T ss_pred             cc-CCeEEeCCcc--------------cccCCEEEEEeCCc-CHHHHHHHHhC-CeEEEchhhc------CCCCC--CCC
Confidence            77 6765332111              11356888877543 23456666755 7888766532      11111  122


Q ss_pred             HHHHhCCCCC----CeEEEEe
Q 019543          302 EVRQARGLTE----DLVRISV  318 (339)
Q Consensus       302 ~~~~~~g~~~----~~lRisv  318 (339)
                      ..+.++|+.+    +.||+|+
T Consensus       333 ~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       333 HVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             HHHHHcCCCHHHhCccEEEeC
Confidence            4567788764    7788885

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.63  E-value=4.5e-14  Score=136.23  Aligned_cols=168  Identities=19%  Similarity=0.176  Sum_probs=114.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRL----------------------  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~----------------------  109 (339)
                      +++...+||+.+++++|.++++.++||++|+.. +.++++|||+|+ +++.|..+...                      
T Consensus        51 ~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~  129 (431)
T cd00617          51 GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTVP-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQEL  129 (431)
T ss_pred             CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEEc-cCCcccchHHHHHhCCCEeEEEecccccccccc
Confidence            567788999999999999999999999999985 456899999884 55544332110                      


Q ss_pred             -----------HH---------------------------------HHHHHHHHHcCCEEEEeCCcCCC-----------
Q 019543          110 -----------LS---------------------------------RKIAEMAHAHGALLLVDNSIMSP-----------  134 (339)
Q Consensus       110 -----------~~---------------------------------~~I~~la~~~g~~livD~a~a~g-----------  134 (339)
                                 ++                                 ++|.++|++||++||+|+++..+           
T Consensus       130 ~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g  209 (431)
T cd00617         130 IPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEG  209 (431)
T ss_pred             cCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhccccc
Confidence                       00                                 68899999999999999997542           


Q ss_pred             CCcCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-----cCCCCChHHHHHHHhchhh
Q 019543          135 VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----EGSGLAPFDCWICLRGVKT  202 (339)
Q Consensus       135 ~~~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-----~~~~~~~~~a~~~~~~l~~  202 (339)
                      .....+       ....|.+..|+.|..+.+   +||++++++++++++++.....     ...+++..+.+++..+|+.
T Consensus       210 ~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e  286 (431)
T cd00617         210 YRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLRE  286 (431)
T ss_pred             ccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHh
Confidence            211111       124678888888876643   4899999886788888754311     1234555443333334433


Q ss_pred             H--HHHHHHHHHHHHHHHHHHhCC
Q 019543          203 M--ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       203 ~--~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .  ...+++..++++++.+.|++.
T Consensus       287 ~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         287 AVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHC
Confidence            2  344555556668888888876

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.63  E-value=2.2e-14  Score=137.66  Aligned_cols=208  Identities=16%  Similarity=0.204  Sum_probs=130.3

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-h----cCCCC----EEEEcCCCccchHH--------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L----LGTGE----EIVAGDDLYGGTDR--------------  108 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-l----l~~GD----~Vi~~~~~y~~~~~--------------  108 (339)
                      ..++...+|+++|+++.+.+.+++++||++|+...+. +    ..+||    +|++.++.|++...              
T Consensus        70 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~  149 (389)
T PRK01278         70 YRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG  149 (389)
T ss_pred             cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence            3578889999999999888899999999999975433 2    45777    89888776654310              


Q ss_pred             -----------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-
Q 019543          109 -----------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-  140 (339)
Q Consensus       109 -----------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~-  140 (339)
                                       .++                             ++|.++|++||+++|+||+|. .|..+... 
T Consensus       150 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~  229 (389)
T PRK01278        150 FGPLVPGFDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA  229 (389)
T ss_pred             CCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee
Confidence                             000                             899999999999999999986 22222211 


Q ss_pred             ----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHH
Q 019543          141 ----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNA  214 (339)
Q Consensus       141 ----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a  214 (339)
                          ....|+  .|++|.+++ | ...|++++++ ++.+.+.......+.+.+|..+++++..|+.+.  ...++.+++.
T Consensus       230 ~~~~~~~pdi--~t~sK~l~~-G-~~ig~~~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  304 (389)
T PRK01278        230 HEWAGVTPDI--MAVAKGIGG-G-FPLGACLATE-EAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG  304 (389)
T ss_pred             ecccCCCCCE--EEEehhccC-C-cceEEEEEcH-HHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                122354  578999984 4 4456677764 566655433223344567877777766666542  2345555666


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                      +++.+.|+.+..    .+|.+..         ..++.|.++++.+..  .+.+|++.|...|+.+
T Consensus       305 ~~l~~~l~~l~~----~~~~~~~---------~v~g~G~~~~i~~~~--~~~~~~~~l~~~GV~~  354 (389)
T PRK01278        305 LYLKQKLEGLVD----RFPDVIE---------EVRGKGLLLGLKCVV--PNRDLVQALRDEGLLT  354 (389)
T ss_pred             HHHHHHHHHHHh----hCCCcee---------eEecccEEEEEEEec--CHHHHHHHHHHCCeEE
Confidence            666666654311    0110000         013456777777643  3457777776656653

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.63  E-value=6.5e-14  Score=135.28  Aligned_cols=208  Identities=16%  Similarity=0.129  Sum_probs=126.1

Q ss_pred             hHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHH------H------------
Q 019543           56 TRDALESLLAKLD----K----ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDR------L------------  109 (339)
Q Consensus        56 ~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~------~------------  109 (339)
                      ...+|++.+|+++    |    .++.++++++++|+..++.++.|||+|++++|.|.....      .            
T Consensus        77 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~  156 (409)
T PRK07590         77 GYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSG  156 (409)
T ss_pred             CCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccc
Confidence            3456777777654    2    345667777788888766778999999999998864321      0            


Q ss_pred             HH----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc-cC-C
Q 019543          110 LS----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPL-EL-G  143 (339)
Q Consensus       110 ~~----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~-~~-~  143 (339)
                      +.                                        ++|+++|++||++||+||+|+.....    .++ .. +
T Consensus       157 ~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~  236 (409)
T PRK07590        157 IVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEG  236 (409)
T ss_pred             eeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCC
Confidence            00                                        88999999999999999999743221    111 11 1


Q ss_pred             ---CeEEEeccccccccCCCceEEEEEEcChhHHHHH-----------HHHHHhcC-CCCChHHHHHHHhch-----hhH
Q 019543          144 ---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-----------YFLQNAEG-SGLAPFDCWICLRGV-----KTM  203 (339)
Q Consensus       144 ---~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l-----------~~~~~~~~-~~~~~~~a~~~~~~l-----~~~  203 (339)
                         .-|+++||||.++.+|. +.||+++++ ++++.+           ........ ...+.+...++...+     +.+
T Consensus       237 ~~~~vi~~~SfSK~~~~pGl-RiG~~i~~~-~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~  314 (409)
T PRK07590        237 ARECAIEFRSFSKTAGFTGT-RCAYTVVPK-ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQI  314 (409)
T ss_pred             cccceEEEecCccccCCcCc-eeEEEEcCH-HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHH
Confidence               23778999999987664 567888765 566521           11111111 234443333322222     233


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccC
Q 019543          204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFG  282 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G  282 (339)
                      ...++...++.+.+.+.|+.+ ++. +.-|                ..+..+|+.+.+...+.+|++.+ +..++.+..|
T Consensus       315 ~~~~~~~~~~r~~l~~~L~~~-~~~-~~~~----------------~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg  376 (409)
T PRK07590        315 KELIDYYMENAKIIREGLESA-GFE-VYGG----------------VNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPG  376 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCc-eecC----------------CcceEEEEECCCCCCHHHHHHHHHHHCCEEEeCh
Confidence            444556667778888888876 332 1111                13457788875433345666655 4557777666


Q ss_pred             C
Q 019543          283 S  283 (339)
Q Consensus       283 ~  283 (339)
                      .
T Consensus       377 ~  377 (409)
T PRK07590        377 S  377 (409)
T ss_pred             h
Confidence            4

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=2.7e-14  Score=134.33  Aligned_cols=224  Identities=11%  Similarity=0.105  Sum_probs=145.5

Q ss_pred             CchHHHHHHHHHhHhC-----CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           54 NPTRDALESLLAKLDK-----ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g-----~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .+...+|++.++++++     .+++++++++++++..++..+   |.|++++|.|......++                 
T Consensus        55 ~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~---d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  131 (335)
T PRK14808         55 DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI  131 (335)
T ss_pred             CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh---CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCC
Confidence            4457789999999987     345666666689998766644   789999999887654433                 


Q ss_pred             --------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---cc-CCCeEEEeccccccccCCCc
Q 019543          112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---LE-LGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 --------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~~-~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                +++.+++ +++++||+||+|........   +. ..--+++.||||.++.+|. 
T Consensus       132 ~~~~~~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~Gl-  209 (335)
T PRK14808        132 PEVNVGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQ-  209 (335)
T ss_pred             ChhHccCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCccc-
Confidence                                      7888888 58999999999964321111   11 1224888999999997664 


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          162 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL---RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~---~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                      +.||+++++ ++++.+...+..  ...+.....++.   ...+.+.++.++..++.+++.+.|+.+ +++ + +|     
T Consensus       210 RvG~~v~~~-~~~~~l~~~~~~--~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~~-----  278 (335)
T PRK14808        210 RIGYVVSSE-KFIDAYNRVRLP--FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYR-I-TD-----  278 (335)
T ss_pred             ceEEEEeCH-HHHHHHHHhcCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-CC-----
Confidence            457888764 677777665422  333443333332   223334555556666677888888876 332 1 22     


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                                 +.|+.+++.+++.+ ..++.+.|...|+.|+.      +                      .+.+|||+
T Consensus       279 -----------~~g~f~~~~l~~~~-~~~~~~~l~~~Gi~V~~------~----------------------~~~~Risi  318 (335)
T PRK14808        279 -----------SRGNFVFIFMEKEE-KERLLEHLRAKNIAVRS------F----------------------REGVRITI  318 (335)
T ss_pred             -----------CCCeEEEEeCCCcc-HHHHHHHHHHCCeEEEE------C----------------------CCCeEEec
Confidence                       14678888886433 35677778777887751      0                      13489999


Q ss_pred             ccCCHHHHHHHHHHHHhc
Q 019543          319 GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       319 g~e~~~~li~~l~~al~~  336 (339)
                      |..+..+   .+.++|+.
T Consensus       319 ~~~~~~~---~~~~~l~~  333 (335)
T PRK14808        319 GKREEND---MILKELEV  333 (335)
T ss_pred             CCHHHHH---HHHHHHHh
Confidence            9764333   56666553

>PRK03321 putative aminotransferase; Provisional

Probab=99.63  E-value=2.6e-14  Score=135.28  Aligned_cols=230  Identities=13%  Similarity=0.132  Sum_probs=146.3

Q ss_pred             CchHHHHHHHHHhHhCCC-eEEEcCcH-HHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKAD-RALCFTSG-MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~-~~l~~~sG-~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+...+|++.+|++++.+ +.+++++| ++++..++ .+++|||+|+++.+.|.......+                   
T Consensus        56 ~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  135 (352)
T PRK03321         56 DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDL  135 (352)
T ss_pred             CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCH
Confidence            346789999999999865 34555666 55566544 478999999999887654322111                   


Q ss_pred             -----------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC----ccc----CCCeEEEeccc
Q 019543          112 -----------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR----PLE----LGADIVMHSAT  152 (339)
Q Consensus       112 -----------------------------~~I~~la~~--~g~~livD~a~a~g~~~~----~~~----~~~Di~~~S~s  152 (339)
                                                   ++|.++|++  +|+++|+|++|+......    ++.    ..--++++|||
T Consensus       136 ~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S  215 (352)
T PRK03321        136 DAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFS  215 (352)
T ss_pred             HHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecch
Confidence                                         888888887  599999999996433211    111    12248889999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc---hhhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG---VKTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~---l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+| .+.|+++++ +++++.+....  .....+.....++...   .+.+..++++..++..++.+.|+.. ++. 
T Consensus       216 K~~g~~G-lRiG~~v~~-~~~~~~~~~~~--~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~-  289 (352)
T PRK03321        216 KAYGLAG-LRVGYAVGH-PEVIAALRKVA--VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWT-  289 (352)
T ss_pred             HHhhhHH-HhhhhhcCC-HHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-
Confidence            9998655 456788876 47777776542  2345555544433333   3444555555555566677778765 322 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      + .|                ..|..+++.++.  .+.+|++.|+..|+.+..          .                 
T Consensus       290 ~-~~----------------~~g~~i~i~l~~--~~~~~~~~l~~~gI~v~~----------~-----------------  323 (352)
T PRK03321        290 V-PP----------------SQANFVWLPLGE--RTADFAAAAAEAGVVVRP----------F-----------------  323 (352)
T ss_pred             c-CC----------------CCCCEEEEeCCC--CHHHHHHHHHHCCEEEEc----------c-----------------
Confidence            1 11                135677887753  245778888777776541          0                 


Q ss_pred             CCCeEEEEecc-CCHHHHHHHHHHHHh
Q 019543          310 TEDLVRISVGI-EDVNDLISDLDKALR  335 (339)
Q Consensus       310 ~~~~lRisvg~-e~~~~li~~l~~al~  335 (339)
                      .+..|||+++. ++.+.+++.|.+++.
T Consensus       324 ~~~~iRi~~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        324 AGEGVRVTIGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             CCCcEEEeeCCHHHHHHHHHHHHHHhc
Confidence            11349999986 445666777776654

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.63  E-value=2.5e-14  Score=136.53  Aligned_cols=231  Identities=13%  Similarity=0.131  Sum_probs=141.8

Q ss_pred             chHHHHHHHHHhHhCC----------CeEEEcCcHHHHHHH-HHHhcCCCC-EEEEcCCCccchHHHHH-----------
Q 019543           55 PTRDALESLLAKLDKA----------DRALCFTSGMAALAA-VTHLLGTGE-EIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~----------~~~l~~~sG~~A~~~-il~ll~~GD-~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      +...+|++.++++++.          +++++++++++|+.. +.+++.+|| .|++++|.|......++           
T Consensus        66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~  145 (374)
T PRK02610         66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR  145 (374)
T ss_pred             CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence            3456788888888762          246666666888874 455677886 89999998865432211           


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---cc-C
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---LE-L  142 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~~-~  142 (339)
                                                                   ++|.++|  +|++||+||+|........   +. .
T Consensus       146 ~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~  223 (374)
T PRK02610        146 DPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQH  223 (374)
T ss_pred             CcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcC
Confidence                                                         4444444  4899999999964322111   11 1


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~  219 (339)
                      .--|++.||||.+|.+|. +.||++++ +++++.+...+.  .+.++.....++...+   +.+..++++..+..+.+.+
T Consensus       224 ~~~ivi~SfSK~~g~~Gl-RiG~~v~~-~~l~~~l~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~  299 (374)
T PRK02610        224 PNWVILRTFSKAFRLAAH-RVGYAIGH-PELIAVLEKVRL--PYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQ  299 (374)
T ss_pred             CCEEEEEecchhccCccc-ceeeeecC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            123788999999988774 56688775 467777776542  2334444433333333   3333334444445566777


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|+.++++. + +|.                .|..+++.+.+.....+|++.|...|+.++.                  
T Consensus       300 ~L~~~~~~~-~-~p~----------------~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~~------------------  343 (374)
T PRK02610        300 ALQELPQLR-V-WPS----------------AANFLYLRLSQDAALAALHQALKAQGTLVRH------------------  343 (374)
T ss_pred             HHHhCCCcE-e-CCC----------------cceEEEEeCCCCCCHHHHHHHHHHCCEEEEe------------------
Confidence            887776653 2 331                3567777775433456777777776776531                  


Q ss_pred             CHHHHHhCCCCCCeEEEEeccC-CHHHHHHHHHHHHhcC
Q 019543          300 PVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALRTG  337 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e-~~~~li~~l~~al~~~  337 (339)
                                .++.+|||++.. +.++.++.|.++++++
T Consensus       344 ----------~~~~lRls~~~~~~~~~~l~~l~~~l~~~  372 (374)
T PRK02610        344 ----------TGGGLRITIGTPEENQRTLERLQAALTQL  372 (374)
T ss_pred             ----------CCCeEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence                      125699999853 3455666677666654

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.63  E-value=4.5e-14  Score=134.32  Aligned_cols=232  Identities=16%  Similarity=0.119  Sum_probs=146.1

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc----CCCCEEEEcCCCccchHHHHH-----------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL----GTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll----~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ..+++++.+++++|.+  ..+++++|+.|+..++ .+.    ++||+|+++++.+.......+                 
T Consensus        60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~  139 (371)
T PRK13520         60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRV  139 (371)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcC
Confidence            3478999999999975  4678888899987543 232    368999998876554332211                 


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cCc--c---cCCCeEEEeccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVL---SRP--L---ELGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~---~~~--~---~~~~Di~~~S~s  152 (339)
                                                     ++|.++|++||+++++|++|+.+..   ...  .   ..++|.+++|.+
T Consensus       140 d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~  219 (371)
T PRK13520        140 DVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPH  219 (371)
T ss_pred             CHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCc
Confidence                                           9999999999999999999975532   111  1   246799999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHh-cC-------CCCChHHHHHHHhchh-----hHHHHHHHHHHHHHHHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EG-------SGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-~~-------~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a~~l~~  219 (339)
                      |+..++. . +|+++..++++.+.+.....+ .+       .+.+....+.+...++     .++.+.++..++++++.+
T Consensus       220 K~~~a~~-~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~  297 (371)
T PRK13520        220 KMGLAPI-P-AGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAE  297 (371)
T ss_pred             cccCccC-C-ceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHH
Confidence            9865432 2 344444444565554321111 11       1112222222222232     245567777888899999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|++. +++.+..|                 ..+++.|.+.+   ..++.+.|...|+.++...                
T Consensus       298 ~L~~~-g~~~~~~~-----------------~~~~v~~~~~~---~~~v~~~L~~~gi~v~~~~----------------  340 (371)
T PRK13520        298 ELKER-GFEPVIEP-----------------VLNIVAFDDPN---PDEVREKLRERGWRVSVTR----------------  340 (371)
T ss_pred             HHHhC-CCEEecCC-----------------CceEEEEecCC---HHHHHHHHHHCCceeccCC----------------
Confidence            99876 55422211                 24577777653   3466666766676655211                


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                .+..+|+|++..++++.++.+.++|++
T Consensus       341 ----------~~~~iRis~~~~~t~edi~~~~~~l~~  367 (371)
T PRK13520        341 ----------CPEALRIVCMPHVTREHIENFLEDLKE  367 (371)
T ss_pred             ----------CCCEEEEEEECCCCHHHHHHHHHHHHH
Confidence                      135699999887788888888888764

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.63  E-value=7.3e-14  Score=133.74  Aligned_cols=171  Identities=19%  Similarity=0.173  Sum_probs=121.6

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCcc-chHH----------------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYG-GTDR----------------  108 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~-~~~~----------------  108 (339)
                      -.|.  ++|+..+||+.+++++|.++++.++||++|+.++.. .++|||+|  +.+.+. .+..                
T Consensus        72 d~Ya--gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~  147 (460)
T PRK13237         72 EAYA--GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDE  147 (460)
T ss_pred             hhhc--CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeeccc
Confidence            3466  889999999999999999999999999999986544 68999975  333221 1110                


Q ss_pred             ---------------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcCCC----
Q 019543          109 ---------------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIMSP----  134 (339)
Q Consensus       109 ---------------------~~~-----------------------------~~I~~la~~~g~~livD~a~a~g----  134 (339)
                                           .+.                             ++|.++|++||++|++|.|+..+    
T Consensus       148 a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~f  227 (460)
T PRK13237        148 AHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYF  227 (460)
T ss_pred             ccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhh
Confidence                                 000                             89999999999999999999776    


Q ss_pred             -------CCcCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-C----CCCCh-HHHH
Q 019543          135 -------VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G----SGLAP-FDCW  194 (339)
Q Consensus       135 -------~~~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~----~~~~~-~~a~  194 (339)
                             +..+.+       ...+|.+++|++|.++.+   .||+|+++++++.++++.++-.+ |    ..++- ..++
T Consensus       228 I~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~a  304 (460)
T PRK13237        228 IKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEA  304 (460)
T ss_pred             hcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHH
Confidence                   222222       135799999999999853   48999999999999998875433 3    23433 2223


Q ss_pred             HHHhchhhH-HHHHHHHHHHHHHHHHHHhCC
Q 019543          195 ICLRGVKTM-ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       195 ~~~~~l~~~-~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      ++....+.+ ....+.+-+++++|.+.|.+.
T Consensus       305 lAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        305 MAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             HHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            332222222 255666677889999999865

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.62  E-value=1.6e-13  Score=136.38  Aligned_cols=170  Identities=13%  Similarity=0.117  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhHh------C--CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD------K--ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~------g--~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..+|++.+++++      +  .+++++++++++++..+ .++++|||+|++++|.|......+.                
T Consensus       187 ~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~  266 (517)
T PRK13355        187 LFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSE  266 (517)
T ss_pred             hHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccC
Confidence            567777777766      2  24566666668888754 4588999999999998876543322                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---c-ccCCCe---E
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---P-LELGAD---I  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~-~~~~~D---i  146 (339)
                                                           ++|+++|++||++||+||+|..-.+. .   . .....+   +
T Consensus       267 ~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi  346 (517)
T PRK13355        267 WYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCV  346 (517)
T ss_pred             CCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEE
Confidence                                                 88999999999999999999643321 1   1 111112   4


Q ss_pred             EEeccccccccCCCceEEEEEE-cChhHH----HHHHHHHHhcCCCCChHHHHHHHhchh------hHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAV-KGERLA----KELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQ  215 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~-~~~~l~----~~l~~~~~~~~~~~~~~~a~~~~~~l~------~~~~r~~~~~~~a~  215 (339)
                      +++||||.++.+|.++ ||+++ .++++.    +.+.... ....+.+.....++...|+      .......+..++.+
T Consensus       347 ~~~S~SK~~~~~G~Ri-G~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~  424 (517)
T PRK13355        347 TFSGLSKSHMIAGYRI-GWMILSGNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRE  424 (517)
T ss_pred             EEecchhhccCcccce-EEEEeeCchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence            5689999998877665 56654 233332    2232222 1222333333333333332      12112233445567


Q ss_pred             HHHHHHhCCCCce
Q 019543          216 KIAEFLASHPRVK  228 (339)
Q Consensus       216 ~l~~~L~~~~~i~  228 (339)
                      .+.+.|+.+++++
T Consensus       425 ~l~~~L~~~~g~~  437 (517)
T PRK13355        425 LVYNALNAIPGIS  437 (517)
T ss_pred             HHHHHHhcCCCcc
Confidence            7888888876653

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.62  E-value=4.6e-14  Score=133.88  Aligned_cols=199  Identities=16%  Similarity=0.148  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           56 TRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      ....|++.++++++.  ++.++++++++++..++ ++++|||+|++++|.|........                     
T Consensus        66 ~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~  145 (357)
T PRK14809         66 SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTA  145 (357)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCH
Confidence            456899999999874  35666666688987654 478999999999997653221110                     


Q ss_pred             ----------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-Ccc---c-CCCeEEEeccccccc
Q 019543          112 ----------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RPL---E-LGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~~---~-~~~Di~~~S~sK~l~  156 (339)
                                                  +++.++++.+  +++||+||+|+..... ...   . ..--+++.||||.++
T Consensus       146 ~~~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~  225 (357)
T PRK14809        146 DTVLDAYDGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYG  225 (357)
T ss_pred             HHHHHhhcCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhc
Confidence                                        4555555443  7899999999743321 111   1 112388899999998


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      .+|. +.|++++++ ++.+.+....  ....++.....++...++.   ++...+..+++.+.+.+.|...      .+|
T Consensus       226 ~~Gl-RiG~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~  295 (357)
T PRK14809        226 LAGL-RLGYAVVPE-EWADAYARVN--TPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP------TWE  295 (357)
T ss_pred             Ccch-hheeeecCH-HHHHHHHHhC--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc------cCC
Confidence            7664 567888764 6777776543  2344555554444444432   2333344444555566656432      122


Q ss_pred             CCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          234 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                                      ..|..+++.+.+   ..+|.+.|...|+.+..|.
T Consensus       296 ----------------~~g~f~~~~~~~---~~~~~~~l~~~gv~v~~g~  326 (357)
T PRK14809        296 ----------------SAGNFVLAEVGD---ASAVAEAAQERGVIVRDCT  326 (357)
T ss_pred             ----------------CCCCEEEEECCC---HHHHHHHHHHCCEEEEECc
Confidence                            145677777753   3466777777788877664

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.62  E-value=1.6e-13  Score=131.00  Aligned_cols=173  Identities=19%  Similarity=0.213  Sum_probs=123.0

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchHHH-----------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRL-----------------  109 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~~~-----------------  109 (339)
                      .|.  ++|+..+||+++++++|.++++.++||++|+.++.. .++|||+|  +.+.|..+...                 
T Consensus        66 ~ya--g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea  141 (450)
T TIGR02618        66 AYA--GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEA  141 (450)
T ss_pred             hhc--CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccc
Confidence            466  889999999999999999999999999999875444 68999987  44443221110                 


Q ss_pred             -----------------HH---------------------------------HHHHHHHHHcCCEEEEeCCcCCC--CC-
Q 019543          110 -----------------LS---------------------------------RKIAEMAHAHGALLLVDNSIMSP--VL-  136 (339)
Q Consensus       110 -----------------~~---------------------------------~~I~~la~~~g~~livD~a~a~g--~~-  136 (339)
                                       ++                                 ++|.++|++||++|++|.|+..+  ++ 
T Consensus       142 ~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I  221 (450)
T TIGR02618       142 HDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFI  221 (450)
T ss_pred             cccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhh
Confidence                             00                                 89999999999999999999764  22 


Q ss_pred             --------cCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-----CCChHHHHHH
Q 019543          137 --------SRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-----GLAPFDCWIC  196 (339)
Q Consensus       137 --------~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-----~~~~~~a~~~  196 (339)
                              ..++       ...+|.+++|+.|..+++   +||+|++++++++++++.++..++.     .++......+
T Consensus       222 ~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~al  298 (450)
T TIGR02618       222 KEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAM  298 (450)
T ss_pred             hcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHH
Confidence                    1122       226799999999998854   5899998999999999988665432     2232221222


Q ss_pred             HhchhhH-H-HHHHHHHHHHHHHHHHHhCCCCce
Q 019543          197 LRGVKTM-A-LRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       197 ~~~l~~~-~-~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ..+|+.. + .....+.+++++|.+.|++. +|.
T Consensus       299 a~gL~e~~~~~y~~~r~~~a~~La~~L~~~-Gvp  331 (450)
T TIGR02618       299 AIGIREAVDYEYIEHRVKQVRYLGDKLKAA-GVP  331 (450)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence            3344443 2 33444556699999999887 554

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PLN02271 serine hydroxymethyltransferase

Probab=99.62  E-value=4.1e-14  Score=137.64  Aligned_cols=259  Identities=20%  Similarity=0.200  Sum_probs=149.4

Q ss_pred             CCcccCC--CCchHHHHHH----HHHhHhCCCe----EEE-cCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH-----
Q 019543           46 PYDYTRS--GNPTRDALES----LLAKLDKADR----ALC-FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR-----  108 (339)
Q Consensus        46 ~~~y~r~--~~~~~~~le~----~la~~~g~~~----~l~-~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~-----  108 (339)
                      +|...|+  ++...+++|.    +..++||+++    +=+ .-||+.|+.++ .++++|||.|+..+..++|...     
T Consensus       179 G~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~  258 (586)
T PLN02271        179 GMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYT  258 (586)
T ss_pred             CCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccc
Confidence            4444564  5566667764    4456888665    333 44999999864 5699999999997664433211     


Q ss_pred             ----------------------------------HH-H-------------------HHHHHHHHHcCCEEEEeCCcCCC
Q 019543          109 ----------------------------------LL-S-------------------RKIAEMAHAHGALLLVDNSIMSP  134 (339)
Q Consensus       109 ----------------------------------~~-~-------------------~~I~~la~~~g~~livD~a~a~g  134 (339)
                                                        .. .                   ++|.++|+++|+++++|.+|..|
T Consensus       259 ~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aG  338 (586)
T PLN02271        259 PGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISG  338 (586)
T ss_pred             ccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECccccc
Confidence                                              00 0                   99999999999999999999888


Q ss_pred             CCc-----CcccCCCeEEEeccccccccCCCceEEEEEEcCh-------------------hHHHHHHHHH--HhcCCCC
Q 019543          135 VLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-------------------RLAKELYFLQ--NAEGSGL  188 (339)
Q Consensus       135 ~~~-----~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-------------------~l~~~l~~~~--~~~~~~~  188 (339)
                      ...     .|+. ++|++++|.+|+|.||   .||+|.++++                   ++.+++....  .+.|...
T Consensus       339 LIa~g~~~sP~~-~aDvvt~TTHKtLrGP---rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGph  414 (586)
T PLN02271        339 LVAAKECVNPFD-YCDIVTSTTHKSLRGP---RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPH  414 (586)
T ss_pred             ccccCcCCCCCc-CCcEEEeCCcccCCCC---CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChh
Confidence            652     3444 5899999999999976   4678877642                   1222222111  0112222


Q ss_pred             ChHHHHHH--Hh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-
Q 019543          189 APFDCWIC--LR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-  263 (339)
Q Consensus       189 ~~~~a~~~--~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-  263 (339)
                      +...++++  +.  ....+.+..+|..+|++.|++.|.+. +++.+.  +              ....+++.+.+.+.. 
T Consensus       415 n~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~--g--------------gTdnHlvLvDl~~~g~  477 (586)
T PLN02271        415 NNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVT--G--------------GTDNHLLLWDLTTLGL  477 (586)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEee--C--------------CCCcceeeecCcccCC
Confidence            22222222  22  22345778888899999999999876 444443  1              124567777763221 


Q ss_pred             HHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          264 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       264 ~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ......+.|...+|.++--.      .|.-.  ..+. ....+.| .+.+.|..++.+|++.+.+-|.++++
T Consensus       478 ~G~~ae~~Le~~~I~~Nkn~------iP~d~--~~~~-psGiRiG-T~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        478 TGKNYEKVCEMCHITLNKTA------IFGDN--GTIS-PGGVRIG-TPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CHHHHHHHHHHcCeEecccc------CCCCC--CCCC-CCccccc-CHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            12233334445566555210      11100  0000 0001111 11233444566778888888877775

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.62  E-value=1.7e-14  Score=137.36  Aligned_cols=227  Identities=15%  Similarity=0.168  Sum_probs=145.8

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+...+|++.++++++.+  ++++++++++++..++ .+++|||+|++++|.|........                   
T Consensus        63 ~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~~  142 (366)
T PRK01533         63 DGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLD  142 (366)
T ss_pred             CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCCCCcCHH
Confidence            344678999999999854  4555555578887654 478999999999998876543322                   


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc----cCCCeEEEeccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~----~~~~Di~~~S~s  152 (339)
                                                     ++|+++|++++ ++|+||+|......    ..+    ...--|++.|||
T Consensus       143 ~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfS  221 (366)
T PRK01533        143 EISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFS  221 (366)
T ss_pred             HHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCch
Confidence                                           55666666666 67789998532211    111    112358999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+|.+ .||++++ +++++.++..+  ..+.++.+...++...|+.   .....+...++.+++.+.++.+ ++. 
T Consensus       222 K~~~l~GlR-iG~~i~~-~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~-  295 (366)
T PRK01533        222 KAYGLASFR-VGYAVGH-EELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIP-  295 (366)
T ss_pred             HHhcChHHH-HhHHhCC-HHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-
Confidence            999977755 5677776 47888777654  2355666665555555433   2333444556667777777765 322 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                      + +|                +.+..+++.+.+   ..++.+.|...||.|+.         .                  
T Consensus       296 ~-~~----------------~~~nf~~~~~~~---~~~~~~~l~~~GI~Vr~---------~------------------  328 (366)
T PRK01533        296 F-YQ----------------SQTNFIFLPVEN---GGEIYEACAHAGFIIRP---------F------------------  328 (366)
T ss_pred             c-CC----------------CcCcEEEEeCCC---HHHHHHHHHHCCcEEcc---------C------------------
Confidence            1 12                246678887743   34677777778887762         0                  


Q ss_pred             CCCeEEEEecc-CCHHHHHHHHHHHHh
Q 019543          310 TEDLVRISVGI-EDVNDLISDLDKALR  335 (339)
Q Consensus       310 ~~~~lRisvg~-e~~~~li~~l~~al~  335 (339)
                       ++.+|||+|. ++.+.+++.|.+.++
T Consensus       329 -~~~iRis~~~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        329 -PNGVRITVGTREQNEGVISVLQQHFE  354 (366)
T ss_pred             -CCceEEeCCCHHHHHHHHHHHHHHHH
Confidence             1459999996 445666666666553

>PRK07908 hypothetical protein; Provisional

Probab=99.62  E-value=1.4e-13  Score=130.17  Aligned_cols=232  Identities=16%  Similarity=0.165  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           56 TRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      ...+|++.+++++|.  ++.++++++++|+..++. ++||+ +++..|.|......++                      
T Consensus        59 g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~~~~-viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l  136 (349)
T PRK07908         59 DERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LRPRR-AAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV  136 (349)
T ss_pred             chHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cCCCe-EEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHh
Confidence            467899999999875  356666677899886666 67865 4556787765443222                      


Q ss_pred             ----------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc---cCCCeEEEeccccccccCCCceEE
Q 019543          112 ----------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL---ELGADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 ----------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~---~~~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                            ++|.++|+ ++.++|+||+|+.-+...  .+   ...-.+++.||||.++.+| .+.|
T Consensus       137 ~~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~G-lRiG  214 (349)
T PRK07908        137 PDDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAG-LRVG  214 (349)
T ss_pred             ccCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCcc-ceee
Confidence                                  88999996 588899999986422211  11   1122478889999998666 4567


Q ss_pred             EEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCC
Q 019543          165 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR-----GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  239 (339)
Q Consensus       165 ~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~-----~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~  239 (339)
                      +++++ +++++.++.....  +.+++.....+..     ..+.+...+++..++.+++.+.|+++ +++ +..|      
T Consensus       215 ~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p------  283 (349)
T PRK07908        215 YALGA-PDVLARLTRGRAH--WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDP------  283 (349)
T ss_pred             eeecC-HHHHHHHHhcCCC--CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccC------
Confidence            88876 4677776654322  3334433222222     12334445556667777788888876 443 2222      


Q ss_pred             chHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec
Q 019543          240 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg  319 (339)
                                ..+..+++.+.+   ...+.+.|++.|+.++.|..+.                     +..++.+|||++
T Consensus       284 ----------~~g~~~~~~~~~---~~~~~~~l~~~gI~v~~g~~f~---------------------~~~~~~vRis~~  329 (349)
T PRK07908        284 ----------AAAPFVLVRVPD---AELLRKRLRERGIAVRRGDTFP---------------------GLDPDYLRLAVR  329 (349)
T ss_pred             ----------CCceEEEEECCc---HHHHHHHHHhCCEEEEECCCCC---------------------CCCCCeEEEEeC
Confidence                      146788888764   2456666777788887665321                     013478999998


Q ss_pred             c-CCHHHHHHHHHHHHhc
Q 019543          320 I-EDVNDLISDLDKALRT  336 (339)
Q Consensus       320 ~-e~~~~li~~l~~al~~  336 (339)
                      . ++.+.+++.|.+.+.+
T Consensus       330 ~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        330 PRAEVPVLVQALAEILKA  347 (349)
T ss_pred             CCccHHHHHHHHHHHHhc
Confidence            6 3566666666655543

>PRK09105 putative aminotransferase; Provisional

Probab=99.62  E-value=2.9e-14  Score=135.98  Aligned_cols=200  Identities=16%  Similarity=0.160  Sum_probs=125.5

Q ss_pred             CchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+...+|++.+++++|.  +++++++++++++..++ .++++||+|++++|.|.......+                   
T Consensus        77 ~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~  156 (370)
T PRK09105         77 LELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDV  156 (370)
T ss_pred             CchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCH
Confidence            34477899999999874  46777777789998654 578999999999999876643322                   


Q ss_pred             ----------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCc-Ccc---cCCCe-EEEeccccccc
Q 019543          112 ----------------------------RKIAEMAHA--HGALLLVDNSIMSPVLS-RPL---ELGAD-IVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------~~I~~la~~--~g~~livD~a~a~g~~~-~~~---~~~~D-i~~~S~sK~l~  156 (339)
                                                  ++|.++++.  +|++||+||+|...... ...   ....+ +++.||||.+|
T Consensus       157 ~~l~~~~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g  236 (370)
T PRK09105        157 KAMLAADPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYG  236 (370)
T ss_pred             HHHHhcCCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhc
Confidence                                        556555543  58999999999532111 111   11223 77789999999


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      .+|.+ .||+++++ ++++.+...   .....+......+...+   +.++...++..++.+++.+.|+.+ ++. + +|
T Consensus       237 ~~GlR-iG~~v~~~-~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~-~~  308 (370)
T PRK09105        237 MAGMR-LGLAAARP-DLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYK-C-TP  308 (370)
T ss_pred             CCccc-eeeeecCH-HHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-c-CC
Confidence            87754 56887764 677766554   12223333333333333   223444556667778888888875 332 1 11


Q ss_pred             CCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec
Q 019543          234 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                                      ..++.+.+.++.  ...+|.+.|...|+.+
T Consensus       309 ----------------~~~~f~~~~~~~--~~~~l~~~L~~~gI~v  336 (370)
T PRK09105        309 ----------------SQANCFMVDVKR--PAKAVADAMAKQGVFI  336 (370)
T ss_pred             ----------------CCCcEEEEeCCC--CHHHHHHHHHHCCcEE
Confidence                            134556565542  2356777776667766

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.62  E-value=6.3e-14  Score=134.84  Aligned_cols=235  Identities=21%  Similarity=0.199  Sum_probs=145.5

Q ss_pred             CCCCchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHHH-hcCCC-CEEEEcCCCccchH------------------
Q 019543           51 RSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH-LLGTG-EEIVAGDDLYGGTD------------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il~-ll~~G-D~Vi~~~~~y~~~~------------------  107 (339)
                      ++.++...+|+++|+++++.   +.+++++||++|+..++. +..+| +.|+..++.|++..                  
T Consensus        81 ~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~  160 (398)
T PRK03244         81 LFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP  160 (398)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence            44566778999999999874   478889999999986543 33355 45555555665431                  


Q ss_pred             -------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----
Q 019543          108 -------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----  139 (339)
Q Consensus       108 -------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~-----  139 (339)
                                   ..++                             ++|.++|++||+++|+||+|. .|..+..     
T Consensus       161 ~~~~~~~~~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~  240 (398)
T PRK03244        161 LPGGVEHVPYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQH  240 (398)
T ss_pred             CCCCceEeCCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhh
Confidence                         0011                             699999999999999999985 2221211     


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHH
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKI  217 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l  217 (339)
                      .....|++  +++|++++ | ...|++++++ ++.+.+...........+|..++++...|+.+.  ...++.++..+++
T Consensus       241 ~~~~pDi~--t~sK~l~~-G-~~ig~~~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l  315 (398)
T PRK03244        241 DGVTPDVV--TLAKGLGG-G-LPIGACLAFG-PAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQL  315 (398)
T ss_pred             hCCCCCEE--EEchhhhC-C-cccEEEEEcH-HHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            12235754  67999994 4 3355666664 566655432222345567777777776666442  3455566667778


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCC
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .+.|++.+      +|....          .++.|.++++++... .+.++.+.+...|+.++..               
T Consensus       316 ~~~L~~~~------~~~~~~----------v~g~g~~~~i~~~~~-~~~~~~~~l~~~Gv~~~~~---------------  363 (398)
T PRK03244        316 RAGIEALG------HPLVDH----------VRGRGLLLGIVLTAP-VAKAVEAAAREAGFLVNAV---------------  363 (398)
T ss_pred             HHHHHhcC------CCceee----------EeeccEEEEEEEecc-HHHHHHHHHHHCCeEEeec---------------
Confidence            88887642      111000          134678899988432 4567888887777655420               


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                                  ..+.||+++.+..+++.++.+.++|
T Consensus       364 ------------~~~~iR~~p~~~~t~~~i~~~~~~l  388 (398)
T PRK03244        364 ------------APDVIRLAPPLIITDAQVDAFVAAL  388 (398)
T ss_pred             ------------CCCEEEEECCCcCCHHHHHHHHHHH
Confidence                        1257999987744444444444444

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.61  E-value=7.7e-14  Score=132.88  Aligned_cols=228  Identities=13%  Similarity=0.126  Sum_probs=141.6

Q ss_pred             chHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      +....|++.+++++    |    .+++++++++++++..++ .+++|||.|+++.|.|........              
T Consensus        65 ~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~  144 (368)
T PRK03317         65 RDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAAD  144 (368)
T ss_pred             CchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCC
Confidence            34567888888876    3    245666666688888655 478999999999998876543221              


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCc--cc----CCCeEEEe
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRP--LE----LGADIVMH  149 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~--~~----~~~Di~~~  149 (339)
                                                         +++.++++.++++||+||+|+.... +.+  ..    ..-.+++.
T Consensus       145 ~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~  224 (368)
T PRK03317        145 FTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSR  224 (368)
T ss_pred             CCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEE
Confidence                                               8899999999999999999974321 111  11    11237889


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      ||||.+|.+| .+.|+++++ +++++.++..+  .....++...+++...++   .+.+++++..++.+.+.+.|+.+ +
T Consensus       225 SfSK~~g~~G-lRiG~~~~~-~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  299 (368)
T PRK03317        225 TMSKAFAFAG-GRLGYLAAA-PAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-G  299 (368)
T ss_pred             echhhhccch-hhhhhhhCC-HHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            9999998665 455788776 46777776543  234556665554444443   33444555666677788888765 3


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEE-eeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~-~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      +. + .+                +.++.+.+ .+.   ...++.+.|.+.|+.++..+                      
T Consensus       300 ~~-~-~~----------------~~~~~~~~~~~~---~~~~~~~~l~~~Gv~v~~~~----------------------  336 (368)
T PRK03317        300 LR-V-AP----------------SDANFVLFGRFA---DRHAVWQGLLDRGVLIRDVG----------------------  336 (368)
T ss_pred             CE-e-CC----------------CCCcEEEEeccC---CHHHHHHHHHHCCEEEEeCC----------------------
Confidence            32 1 11                12344433 333   23567777766777664210                      


Q ss_pred             hCCCCCCeEEEEeccC-CHHHHHHHHHHHH
Q 019543          306 ARGLTEDLVRISVGIE-DVNDLISDLDKAL  334 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e-~~~~li~~l~~al  334 (339)
                          .++.+||+++.. +.+.+++.|.+.+
T Consensus       337 ----~~~~iRi~~~~~~~~~~~~~~l~~~~  362 (368)
T PRK03317        337 ----IPGWLRVTIGTPEENDAFLAALAEVL  362 (368)
T ss_pred             ----CCCeEEEecCCHHHHHHHHHHHHHHH
Confidence                135799999853 2344455554444

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.61  E-value=1.2e-13  Score=133.76  Aligned_cols=249  Identities=15%  Similarity=0.117  Sum_probs=142.3

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHH-hcC-----CCCEEEE-cCCCccchHH---------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVTH-LLG-----TGEEIVA-GDDLYGGTDR---------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~-ll~-----~GD~Vi~-~~~~y~~~~~---------------  108 (339)
                      ++++++.+.+.+..|    .+++++++++++|+..++. +++     +||.|++ .+|.|++...               
T Consensus        78 ~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~  157 (416)
T PRK09440         78 ELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNI  157 (416)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccccc
Confidence            344444444444334    2456666666889876554 554     6999999 6887764321               


Q ss_pred             ---------------HH--H------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Cccc--
Q 019543          109 ---------------LL--S------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPLE--  141 (339)
Q Consensus       109 ---------------~~--~------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~~--  141 (339)
                                     .+  .                        ++|+++|++||++||+||+|+.....    ....  
T Consensus       158 ~~~~~~~~~~~~d~~~l~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~  237 (416)
T PRK09440        158 ELLPEGQFKYHVDFEHLHIDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLW  237 (416)
T ss_pred             ccccccccccCCCHHHcccCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccc
Confidence                           00  0                        88999999999999999999743211    1111  


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh--H----HH-HHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--M----AL-RVEKQQDNA  214 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~--~----~~-r~~~~~~~a  214 (339)
                      ..--|+++||||. +.+| .+.||+++++ ++++.+.......+...+.+...++...++.  +    .. ..+..+++.
T Consensus       238 ~~~vI~~~SfSK~-~~pG-lRiG~~i~~~-~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~  314 (416)
T PRK09440        238 NPNIILCMSLSKL-GLPG-VRCGIVIADE-EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKV  314 (416)
T ss_pred             cCCeEEEeccccc-CCCc-ceEEEEeCCH-HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            1224888999996 6655 5567887764 7888887776655555565554444444332  1    11 122234445


Q ss_pred             HHHHHHHhCC-CCceE-EecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceecc
Q 019543          215 QKIAEFLASH-PRVKK-VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       215 ~~l~~~L~~~-~~i~~-v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                      +.+.+.|+++ +++.. +..|                ..|..+++.+.+ .....+|.+.+...|+.+..|..+.    +
T Consensus       315 ~~~~~~L~~~l~~~~~~~~~p----------------~gg~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~----~  374 (416)
T PRK09440        315 QLAIALLRRYLPDEPCLIHKP----------------EGAIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFF----P  374 (416)
T ss_pred             HHHHHHHHHhcccCCeEEecC----------------CCceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhC----C
Confidence            5566666543 22211 1222                135677777753 2234567777777788888765431    1


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                      ..  ..        ..+...+.+|||++.  ++.++.++.|.+++++
T Consensus       375 ~~--~~--------~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~  411 (416)
T PRK09440        375 GL--DE--------DWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEK  411 (416)
T ss_pred             CC--cc--------ccCCcCceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence            00  00        000013579999974  3344556666666654

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.60  E-value=7.7e-13  Score=121.47  Aligned_cols=253  Identities=20%  Similarity=0.240  Sum_probs=164.3

Q ss_pred             CCCCcccCCCCchHHHHHHHHHhHhCC---CeEEEcCcH-HHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-------
Q 019543           44 NGPYDYTRSGNPTRDALESLLAKLDKA---DRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-------  111 (339)
Q Consensus        44 ~~~~~y~r~~~~~~~~le~~la~~~g~---~~~l~~~sG-~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-------  111 (339)
                      .+.|.|+-......+++.+..++-++-   ++.++|+.| .-++... -.+.+|||.|++..|.|++....++       
T Consensus        53 hGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i  132 (388)
T COG1168          53 HGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVI  132 (388)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEE
Confidence            344778733344778888888877663   345555555 8888854 4589999999999999998776554       


Q ss_pred             ------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--c--
Q 019543          112 ------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--P--  139 (339)
Q Consensus       112 ------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~--  139 (339)
                                                                      .+|.+||++||+.||.||.|+.-++..  .  
T Consensus       133 ~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~  212 (388)
T COG1168         133 ENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIP  212 (388)
T ss_pred             eccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccc
Confidence                                                            889999999999999999998654421  1  


Q ss_pred             ---c-cCCC--eEEEeccccccccCCCceEEEEEEcChhHHH-HHHHHHHhcCCCCChHHHH---HHH-hchhhHHHHHH
Q 019543          140 ---L-ELGA--DIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPFDCW---ICL-RGVKTMALRVE  208 (339)
Q Consensus       140 ---~-~~~~--Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~-~l~~~~~~~~~~~~~~~a~---~~~-~~l~~~~~r~~  208 (339)
                         + +..+  -|.+.|.||+|+-.| ..++.++..++++.+ .++++.+......+.+...   .+. .+=+-+++.++
T Consensus       213 ~a~ls~~~a~~~it~~saSKtFNlaG-L~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~  291 (388)
T COG1168         213 FASLSERFADNSITLTSASKTFNLAG-LKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLE  291 (388)
T ss_pred             hhhcChhhhcceEEEeeccccccchh-hhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHH
Confidence               1 1122  378888999999765 456666666666633 3444444444444544321   122 22233555566


Q ss_pred             HHHHHHHHHHHHHhCC-CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC----HHHHHHHHccCCcceeecccCC
Q 019543          209 KQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~-~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~----~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      -+.+|.+++.+.+.++ |+|+ +.-|.                .+.+.|+.+..    .....++.  +.+.+++++.|.
T Consensus       292 yl~~N~~~~~~~l~~~~P~v~-v~~p~----------------gTYL~WLD~r~l~l~d~~l~~~l--l~~akVal~~G~  352 (388)
T COG1168         292 YLKDNRDYVADFLNKHLPGVK-VTEPQ----------------GTYLAWLDCRELGLDDSELAEFL--LEEAKVALSPGS  352 (388)
T ss_pred             HHHHHHHHHHHHHHhhCCCcE-EecCC----------------CceeeeeeccccCCChHHHHHHH--HHhhcEeccCCC
Confidence            6778999999999764 7775 33342                35788887532    12233333  345577788775


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC--HHHHHHHHHHHHhcC
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALRTG  337 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~--~~~li~~l~~al~~~  337 (339)
                      .+.-                     -..+.+|+.++..-  .++-++.|..||++.
T Consensus       353 ~FG~---------------------~g~gf~RlN~acpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         353 TFGE---------------------EGSGFVRLNFACPRAILEEALERLKRALKKR  387 (388)
T ss_pred             ccCc---------------------CCCceEEEecCCCHHHHHHHHHHHHHHHhcc
Confidence            4221                     14589999998644  466677888888764

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.60  E-value=4.6e-14  Score=134.81  Aligned_cols=235  Identities=17%  Similarity=0.199  Sum_probs=147.7

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      .++...+|++.+++..+.+.+++++||++|+.+++.+   ....++|++.+..|+|..                      
T Consensus        69 ~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~  148 (377)
T PRK02936         69 TNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPG  148 (377)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCC
Confidence            4566777888887777767899999999999754442   233466777766665321                      


Q ss_pred             ---------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-----cCC
Q 019543          108 ---------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-----ELG  143 (339)
Q Consensus       108 ---------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~-----~~~  143 (339)
                               ..++                             ++|.++|++||+++|+||+|. .|..+.+.     ...
T Consensus       149 ~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~  228 (377)
T PRK02936        149 FTHVPFNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD  228 (377)
T ss_pred             ceEeCCCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC
Confidence                     0000                             899999999999999999984 22222221     112


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L  221 (339)
                      .|+  .|+||.+++ | ..+|++++++ ++.+.+.......+...+|+.++.+...|+.+  +..+++.+++.+++++.|
T Consensus       229 ~di--~t~sK~l~~-G-~~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L  303 (377)
T PRK02936        229 PDI--VTVAKGLGN-G-IPVGAMIGKK-ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKL  303 (377)
T ss_pred             CcE--EEEcccccC-C-CccEEEEEcH-HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            364  469999993 4 4567888764 67666543222233456787777777666664  245566667777777777


Q ss_pred             hCC-CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCC
Q 019543          222 ASH-PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       222 ~~~-~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      ++. +++..+..               .++.|.++++.+.+.  +..+.+.|.+.|+.+..+                  
T Consensus       304 ~~~~~~~~~~~~---------------v~~~g~~~~i~~~~~--~~~~~~~l~~~gv~v~~~------------------  348 (377)
T PRK02936        304 QEELEHLECVKN---------------IRGKGLMIGIECTEE--VAPVIEQLREEGLLVLSA------------------  348 (377)
T ss_pred             HHHHhhCCcEEe---------------EeecceEEEEEecch--HHHHHHHHHHCCeEEecC------------------
Confidence            652 11111100               123567899988643  456777777666654211                  


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                               ..+.|||++.+..+++.++.+.+.|++
T Consensus       349 ---------g~~~lRi~p~~~~~~~~i~~~i~~l~~  375 (377)
T PRK02936        349 ---------GPNVIRLLPPLVVTKEELDQAVYLLKK  375 (377)
T ss_pred             ---------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence                     236799998766666666666666653

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.60  E-value=5.8e-14  Score=135.13  Aligned_cols=236  Identities=19%  Similarity=0.233  Sum_probs=147.8

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc---------CCCCEEEEcCCCccchH----------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL---------GTGEEIVAGDDLYGGTD----------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll---------~~GD~Vi~~~~~y~~~~----------------  107 (339)
                      .++...+|+++|+++.+.+.+++++||++|+...+.++         ...+.|++.+..|+|..                
T Consensus        75 ~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~  154 (397)
T TIGR03246        75 TNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF  154 (397)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence            46778999999999998889999999999997554432         12355666555555431                


Q ss_pred             -------------------HHHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCC--CcCc--
Q 019543          108 -------------------RLLS-------------------------RKIAEMAHAHGALLLVDNSIMSPV--LSRP--  139 (339)
Q Consensus       108 -------------------~~~~-------------------------~~I~~la~~~g~~livD~a~a~g~--~~~~--  139 (339)
                                         ..+.                         ++|.++|++||+++|+||+| +|.  .+..  
T Consensus       155 ~~~~~~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a  233 (397)
T TIGR03246       155 APLPGGIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYA  233 (397)
T ss_pred             CCCCCceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchh
Confidence                               0000                         99999999999999999998 333  1111  


Q ss_pred             ---ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHH
Q 019543          140 ---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNA  214 (339)
Q Consensus       140 ---~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a  214 (339)
                         .....|++  +++|.+++ | ...|++++++ ++.+.+.......+...+|..++.++..|+.+  +...++.+++.
T Consensus       234 ~~~~gv~pDi~--t~~K~lgg-G-~pigav~~~~-~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~  308 (397)
T TIGR03246       234 YMHYGVTPDIL--TSAKALGG-G-FPIGAMLTTT-EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRH  308 (397)
T ss_pred             hhhcCCCCCEE--EeehhhhC-C-cceeEEEEcH-HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence               12234665  78999974 4 4456676764 66666643222223345666666665555543  33456666777


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceeccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      +++.+.|+++..    .++.+.          ..++.|.++.+++.+  ...+.+|++.|...|+.+...          
T Consensus       309 ~~l~~~L~~l~~----~~~~~~----------~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------  364 (397)
T TIGR03246       309 DLFVDGLEKINA----RYNVFS----------EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA----------  364 (397)
T ss_pred             HHHHHHHHHHHh----cCCCeE----------eeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec----------
Confidence            888887776421    111100          013467788887743  234677888887766654310          


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                       .++.||+++.+.++++.++.+.++|+
T Consensus       365 -----------------g~~~lR~~p~~~~t~~~i~~~~~~l~  390 (397)
T TIGR03246       365 -----------------GPNVVRFAPSLVISDDDIDEGLARFE  390 (397)
T ss_pred             -----------------CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence                             23579998877666665555555544

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.60  E-value=1e-13  Score=133.34  Aligned_cols=235  Identities=14%  Similarity=0.155  Sum_probs=149.6

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc----------CCC-CEEEEcCCCccchH--------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------GTG-EEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll----------~~G-D~Vi~~~~~y~~~~--------------  107 (339)
                      .++...+|+++|+++.+.+.+++++||++|+.+.+.+.          ++| ++|++.+..|+|..              
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~  159 (396)
T PRK04073         80 HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKR  159 (396)
T ss_pred             CCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence            55778899999999998889999999999997544322          134 77887766555421              


Q ss_pred             -----------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-
Q 019543          108 -----------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP-  139 (339)
Q Consensus       108 -----------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~-  139 (339)
                                       ..++                             ++|.++|++||+++|+||+|. .|..+.. 
T Consensus       160 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~  239 (396)
T PRK04073        160 GFGPMLPGIKKIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF  239 (396)
T ss_pred             CCCCCCCCceEeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH
Confidence                             0000                             789999999999999999986 3322211 


Q ss_pred             ----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHH
Q 019543          140 ----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN  213 (339)
Q Consensus       140 ----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~  213 (339)
                          .....|+++  +||.+++.+.. .|++++++ ++.+.+.........+.+|...+.++..|+.+.  ...++..++
T Consensus       240 ~~~~~~~~pdi~~--~sK~lg~gg~~-ig~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~  315 (396)
T PRK04073        240 ACDWDNVTPDMYI--LGKALGGGVFP-ISCVAANR-DILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLEL  315 (396)
T ss_pred             HhhhcCCCCCEEE--ecccccCCCCc-ceEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                122346654  78999975444 56777764 666665432222334567777776767676542  234555566


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+++.+.|+++.      +|.+..          .++.|.++.+.+..  .+.+|.+.|.+.|+.+.          |. 
T Consensus       316 ~~~l~~~L~~l~------~~~i~~----------~~~~g~~~~~~~~~--~~~~~~~~l~~~Gv~~~----------~~-  366 (396)
T PRK04073        316 GEYFKEQLKEID------NPMIKE----------VRGRGLFIGVELNE--PARPYCEALKEEGLLCK----------ET-  366 (396)
T ss_pred             HHHHHHHHHhhc------CCcccc----------eecceEEEEEEecc--hHHHHHHHHHHCCeEEe----------cC-
Confidence            777888777642      111100          13457788887753  34567777766666543          10 


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                      .++.|||++.+..+++.++.+.++|++
T Consensus       367 ----------------~~~~iRi~p~l~~t~e~i~~~~~~l~~  393 (396)
T PRK04073        367 ----------------HETVIRFAPPLVITKEELDWAFEKIKA  393 (396)
T ss_pred             ----------------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence                            236799997766666666666666654

>PRK07505 hypothetical protein; Provisional

Probab=99.60  E-value=2.3e-13  Score=131.15  Aligned_cols=236  Identities=17%  Similarity=0.113  Sum_probs=138.1

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh-----cCCCC-EEEEcCCCccchHH------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL-----LGTGE-EIVAGDDLYGGTDR------------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l-----l~~GD-~Vi~~~~~y~~~~~------------------  108 (339)
                      .++..++||++|+++++. ++++++||+.|+..++.+     ..+|+ .|++.+..|++...                  
T Consensus        89 ~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~  167 (402)
T PRK07505         89 RSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN  167 (402)
T ss_pred             hhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC
Confidence            456789999999999998 899999999998754432     12233 25455544443321                  


Q ss_pred             -------HHH---------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cCc-----cc---CCCeEEEe
Q 019543          109 -------LLS---------------------RKIAEMAHAHGALLLVDNSIMSPVL---SRP-----LE---LGADIVMH  149 (339)
Q Consensus       109 -------~~~---------------------~~I~~la~~~g~~livD~a~a~g~~---~~~-----~~---~~~Di~~~  149 (339)
                             .+.                     ++|.++|++||++||+||+|+.+.+   +..     ..   ....+++.
T Consensus       168 d~~~l~~~~~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~  247 (402)
T PRK07505        168 DLDALEDICKTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAA  247 (402)
T ss_pred             CHHHHHHHHhcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEE
Confidence                   010                     8999999999999999999864322   111     11   12247778


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHHHHhchhhH-----HHHHHHHHHHHHHHHHHHh
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~~~~~l~~~-----~~r~~~~~~~a~~l~~~L~  222 (339)
                      |+||.+++.    ||+++++++++.+.++.....  ++..+++..++.+...++.+     .++.++..++.+.+.+.+.
T Consensus       248 s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  323 (402)
T PRK07505        248 SLGKAFGAS----GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIP  323 (402)
T ss_pred             echhhhhcc----CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence            999999853    577766555677777654322  23345555554444444422     2223333333333322221


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      .         +. .            .....+.++.+++.+.+.++.+.|.+.|+.++...      .|..      +  
T Consensus       324 ~---------~~-~------------g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~p~~------~--  367 (402)
T PRK07505        324 T---------EQ-S------------GSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVF------FPVV------A--  367 (402)
T ss_pred             h---------cC-C------------CCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeec------CCCC------C--
Confidence            1         00 0            11234445555554456778888888788776431      1211      0  


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                            ..++.|||++++..+++.++.+.++|+
T Consensus       368 ------~~~~~lRi~~~~~~t~eei~~~~~~l~  394 (402)
T PRK07505        368 ------KGRAGLRIMFRASHTNDEIKRLCSLLK  394 (402)
T ss_pred             ------CCCceEEEecCccCCHHHHHHHHHHHH
Confidence                  123679999987666666666655554

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.59  E-value=9.8e-14  Score=133.79  Aligned_cols=237  Identities=16%  Similarity=0.196  Sum_probs=147.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc---------CCCCEEEEcCCCccchHH---------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL---------GTGEEIVAGDDLYGGTDR---------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll---------~~GD~Vi~~~~~y~~~~~---------------  108 (339)
                      .++...+|+++|+++.+.+.+++++||+.|+...+.++         ...+.|++.+..|+|...               
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~  159 (403)
T PRK05093         80 TNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF  159 (403)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence            35667799999999988889999999999997544332         123456666665655310               


Q ss_pred             --------------------HHH-------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc--
Q 019543          109 --------------------LLS-------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL--  140 (339)
Q Consensus       109 --------------------~~~-------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~--  140 (339)
                                          .+.                         ++|+++|++||+++|+||+|. .+..+...  
T Consensus       160 ~~~~~~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~  239 (403)
T PRK05093        160 GPKPADITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAY  239 (403)
T ss_pred             CCCCCCcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhh
Confidence                                000                         899999999999999999986 22222221  


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQ  215 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~  215 (339)
                         ....|  +.|+||++++ | ...|++++++ ++.+.+...........+|..++.+...|+.+  +...++.+++.+
T Consensus       240 ~~~~~~pd--i~s~sK~l~~-G-~rig~vv~~~-~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~  314 (403)
T PRK05093        240 MHYGVTPD--ILTSAKALGG-G-FPIGAMLTTA-EIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQ  314 (403)
T ss_pred             hhcCCCCC--EEEecccccC-C-cceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence               11235  4689999993 4 4567777764 66666653222233455677666665555443  234566677788


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceecccc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      ++.+.|+++..    .++... .         .++.|.++++.+.+.  ..+.+|++.|...|+.+..+           
T Consensus       315 ~l~~~L~~~~~----~~~~~~-~---------~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----------  369 (403)
T PRK05093        315 RFVDGLQKINQ----KYGVFS-E---------IRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVA-----------  369 (403)
T ss_pred             HHHHHHHHHHh----hCCCeE-e---------EeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecC-----------
Confidence            88888876421    011000 0         123567888887432  24567888876666654311           


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                      ..+.+|+++.+...++.++.+.+.|+
T Consensus       370 ----------------g~~~lRl~~~~~~~~~~i~~~~~~l~  395 (403)
T PRK05093        370 ----------------GPDVLRFAPSLVIEEADIDEGLARFE  395 (403)
T ss_pred             ----------------CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence                            23679998887755555555555544

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.59  E-value=7.5e-14  Score=134.74  Aligned_cols=237  Identities=16%  Similarity=0.182  Sum_probs=147.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc---------CCCCEEEEcCCCccchHH---------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL---------GTGEEIVAGDDLYGGTDR---------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll---------~~GD~Vi~~~~~y~~~~~---------------  108 (339)
                      .++...+|+++|+++.+.+.+++++||++|+...+.+.         .+...|+..+..|+|...               
T Consensus        79 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~  158 (406)
T PRK12381         79 TNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF  158 (406)
T ss_pred             CCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC
Confidence            46678899999999988889999999999997544332         245677775555544320               


Q ss_pred             ----------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc--
Q 019543          109 ----------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL--  140 (339)
Q Consensus       109 ----------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~--  140 (339)
                                      .++                             ++|.++|++||+++|+||+|. .|..+...  
T Consensus       159 ~~~~~~~~~~~~~d~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~  238 (406)
T PRK12381        159 APLPPDIRHAAYNDLNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAY  238 (406)
T ss_pred             CCCCCCeeEeCCCCHHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhh
Confidence                            000                             999999999999999999982 22222221  


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQ  215 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~  215 (339)
                         ....|+  .|++|.+++ | ...|++++++ ++.+.+.......+...+|+.++.+...|+.+.  ..+++.+++.+
T Consensus       239 ~~~~v~pDi--~t~sK~l~g-G-~~ig~~~~~~-~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~  313 (406)
T PRK12381        239 MHYGVTPDV--LTTAKALGG-G-FPIGAMLTTE-KCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHD  313 (406)
T ss_pred             HhhCCCCCE--EEehhhhhC-C-CceEEEEEcH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence               123465  589999984 4 4566777764 676666432222234567777666666555542  34566667777


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceecccc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      ++.+.|+++..    .++.. .         ..++.|.++++.+.+.  ..+..+.+.+++.|+.+...           
T Consensus       314 ~l~~~L~~l~~----~~~~~-~---------~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----------  368 (406)
T PRK12381        314 WFVERLNTINA----RYGLF-S---------EIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-----------  368 (406)
T ss_pred             HHHHHHHHHHh----hCCCE-E---------EEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC-----------
Confidence            77777765421    01110 0         0134677888887542  34567777787777654310           


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                      .++.|||++.+..+++.|+.+.++|+
T Consensus       369 ----------------g~~~lRl~p~~~~t~~~i~~~~~~l~  394 (406)
T PRK12381        369 ----------------GPNVVRFAPALNISEEEITTGLDRFA  394 (406)
T ss_pred             ----------------CCCEEEEeCCccCCHHHHHHHHHHHH
Confidence                            22579999887555555554444443

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.59  E-value=4.6e-13  Score=129.06  Aligned_cols=210  Identities=15%  Similarity=0.116  Sum_probs=126.7

Q ss_pred             chHHHHHHHHHhHh---C--CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHH----------------H--
Q 019543           55 PTRDALESLLAKLD---K--ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLL----------------S--  111 (339)
Q Consensus        55 ~~~~~le~~la~~~---g--~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~----------------~--  111 (339)
                      +....|++.+|+++   +  .+++++++++++++..+..++.+||+|++++|.|......+                +  
T Consensus        75 ~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~  154 (402)
T TIGR03542        75 QGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKIT  154 (402)
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEE
Confidence            44567888888864   2  34566666668888776667799999999999876443210                1  


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc---cC-
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL---EL-  142 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~---~~-  142 (339)
                                                               ++|+++|++||++||+||+|+......    ++   .. 
T Consensus       155 ~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~  234 (402)
T TIGR03542       155 YLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGA  234 (402)
T ss_pred             EeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCC
Confidence                                                     889999999999999999997433211    11   11 


Q ss_pred             -CCeEEEeccccccccCCCceEEEEEEcChhHH----HHHH-HH---HHhcCCCCChHHHHHHHhch-----hhHHHHHH
Q 019543          143 -GADIVMHSATKFIAGHSDVMAGVLAVKGERLA----KELY-FL---QNAEGSGLAPFDCWICLRGV-----KTMALRVE  208 (339)
Q Consensus       143 -~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~----~~l~-~~---~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~  208 (339)
                       ..-|++.||||.+|.+|. +.||+++++ +++    +.+. .+   ........+.+...++...+     +.+...++
T Consensus       235 ~~~vi~~~SfSK~~g~pGl-RiG~~i~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~  312 (402)
T TIGR03542       235 KECAIEFRSFSKTAGFTGV-RLGWTVVPK-ELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAIS  312 (402)
T ss_pred             cccEEEEecCccccCCCCc-ceEEEEecH-HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHH
Confidence             123778999999987774 456877765 454    1111 11   11112234444333222222     22333445


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCc
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSV  284 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~  284 (339)
                      ...++.+.+.+.|+.. +++ + ++               ...+..+++.+.+.....+|++.+. ..|+.+..|..
T Consensus       313 ~~~~~~~~~~~~L~~~-~~~-~-~~---------------~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~  371 (402)
T TIGR03542       313 YYMENARILRKALEAA-GFK-V-YG---------------GEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSG  371 (402)
T ss_pred             HHHHHHHHHHHHHHhc-Cce-e-cC---------------CCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence            5567777788888775 332 1 11               1135577888754323456666653 56887776643

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.59  E-value=3.8e-13  Score=131.13  Aligned_cols=222  Identities=14%  Similarity=0.101  Sum_probs=135.1

Q ss_pred             eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           72 RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      +.++++++++|+..++ .++.|||.|+++.|.|++....+.                                       
T Consensus       122 ~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~v  201 (447)
T PLN02607        122 RIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRV  201 (447)
T ss_pred             HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCe
Confidence            4666666688987544 578999999999998876432111                                       


Q ss_pred             ---------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c----cc----C------CCeEEEecccccc
Q 019543          112 ---------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P----LE----L------GADIVMHSATKFI  155 (339)
Q Consensus       112 ---------------------~~I~~la~~~g~~livD~a~a~g~~~~-~----~~----~------~~Di~~~S~sK~l  155 (339)
                                           ++|+++|++||+.+|+||+|+..++.. +    ..    .      .--+++.|+||.|
T Consensus       202 k~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f  281 (447)
T PLN02607        202 RGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL  281 (447)
T ss_pred             eEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC
Confidence                                 789999999999999999997543321 1    10    1      1126789999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-------hHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-------~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      |.+| .+.|++++.++.+...++.... ++ ..+.....++...|+       .+....+++.++.+.+.+.|+.+ ++.
T Consensus       282 g~~G-lRvG~ivs~n~~l~~~~~~~~~-~~-~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~  357 (447)
T PLN02607        282 GLPG-FRVGTIYSYNDKVVTTARRMSS-FT-LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIE  357 (447)
T ss_pred             CCCc-ceEEEEEEcCHHHHHHHHHHhh-cC-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            8777 5567888755566666654432 22 223333332222222       12344555666777788888875 332


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH------HHHHHHHccC-CcceeecccCCcccceeccccccCCCCCH
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~------~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      .  .+               ...|..+|+.+...      +...++++.+ +..|+.++.|..+    ++          
T Consensus       358 ~--~~---------------~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f----~~----------  406 (447)
T PLN02607        358 C--LK---------------GNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSC----HC----------  406 (447)
T ss_pred             c--cc---------------CCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCcccc----CC----------
Confidence            1  11               11355677776421      2234566555 4568888776532    11          


Q ss_pred             HHHHhCCCCCCeEEEEeccCC---HHHHHHHHHHHHh
Q 019543          302 EVRQARGLTEDLVRISVGIED---VNDLISDLDKALR  335 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~---~~~li~~l~~al~  335 (339)
                             ..++.+||+++..+   .++-+++|.++++
T Consensus       407 -------~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~  436 (447)
T PLN02607        407 -------SEPGWFRVCFANMSEDTLEVALKRIHRFMD  436 (447)
T ss_pred             -------CCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Confidence                   13578999999633   3444566666654

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.59  E-value=2.4e-13  Score=131.02  Aligned_cols=237  Identities=14%  Similarity=0.210  Sum_probs=150.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc----------CC-CCEEEEcCCCccchH--------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------GT-GEEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll----------~~-GD~Vi~~~~~y~~~~--------------  107 (339)
                      .++...+|+++|++++|.+.+++++||++|+...+.++          .+ .+.|++....|+|..              
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            56778999999999999889999999999997544321          23 456666655555420              


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCc
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLS  137 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a-~g~~~  137 (339)
                                           ..++                            ++|.++|++||+++|+||+|. .|..+
T Consensus       157 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G  236 (401)
T TIGR01885       157 NFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG  236 (401)
T ss_pred             ccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence                                 1111                            899999999999999999983 22222


Q ss_pred             Cc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHHHH
Q 019543          138 RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQ  210 (339)
Q Consensus       138 ~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~  210 (339)
                      ..     .....|+++  ++|.+++.+.. .|+++++ +++.+.++..........+|...+.+...|+.+..  ..++.
T Consensus       237 ~~~~~~~~~~~~di~~--~gK~l~~g~~~-ig~v~~~-~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~  312 (401)
T TIGR01885       237 KLLCVDHENVKPDIVL--LGKALSGGVYP-VSAVLAD-DDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENA  312 (401)
T ss_pred             hhhHHhhcCCCCCEEE--eeccccCCCCC-cEEEEEc-HHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence            22     123457664  67999864334 4566665 46766654321112334457666666666665532  34555


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---HHHHHHHccCCcceeecccCCcccc
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      +++.+++.+.|++++. ..+..               .++.|.++.+.+++.   ..+.+|.+.|.+.|+.+.       
T Consensus       313 ~~~~~~~~~~L~~l~~-~~~~~---------------~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~-------  369 (401)
T TIGR01885       313 EKLGEIFRDQLKKLPK-PIITE---------------VRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAK-------  369 (401)
T ss_pred             HHHHHHHHHHHHhccC-CceeE---------------EeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEE-------
Confidence            6667888888887631 00100               124678888877543   256788888877776543       


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         |.                 .++.+||+..+..+++.|+.+.++|++
T Consensus       370 ---~~-----------------~~~~lRi~p~l~~t~~~i~~~l~~l~~  398 (401)
T TIGR01885       370 ---PT-----------------HGNIIRLAPPLVITEEQLDEGLEIIKK  398 (401)
T ss_pred             ---ec-----------------CCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence               10                 236799998877777777777776654

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.58  E-value=5.2e-14  Score=135.23  Aligned_cols=208  Identities=17%  Similarity=0.253  Sum_probs=129.0

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCC-------CEEEEcCCCccchH----------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTG-------EEIVAGDDLYGGTD----------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~G-------D~Vi~~~~~y~~~~----------------  107 (339)
                      +.++..++|+++++++.+.+++++++||++|+.+++. +..++       ++|++.++.|++..                
T Consensus        78 ~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  157 (396)
T PRK02627         78 YYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF  157 (396)
T ss_pred             cCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence            4578899999999999999999999999999985443 32222       67887776664321                


Q ss_pred             ---------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc---
Q 019543          108 ---------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP---  139 (339)
Q Consensus       108 ---------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~---  139 (339)
                                     ..++                             ++|.++|++||+++|+||+|+ .+..+..   
T Consensus       158 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~  237 (396)
T PRK02627        158 EPLVEGFIYVPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAY  237 (396)
T ss_pred             CCCCCCceEeCCCCHHHHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeee
Confidence                           0000                             899999999999999999986 3322211   


Q ss_pred             --ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHH
Q 019543          140 --LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQ  215 (339)
Q Consensus       140 --~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~  215 (339)
                        .....|+  .||||.++ +| ...|++++++ ++++.+.......+...++..++.+...|+.+.  ...++.+++.+
T Consensus       238 ~~~~~~pdi--~t~sK~~~-~G-~rig~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~  312 (396)
T PRK02627        238 QHYGIEPDI--MTLAKGLG-GG-VPIGAVLAKE-KVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGE  312 (396)
T ss_pred             hhcCCCCCE--EEEcchhh-CC-cccEEEEEcH-HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence              1122354  46899999 34 4556777764 566665432222345567777776666666442  23444555556


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                      ++.+.|++...    .+|...          ..++.|.++++.+..  ...+|++.|...|+.+.
T Consensus       313 ~~~~~l~~~~~----~~~~~~----------~~~~~g~~~~i~~~~--~~~~~~~~l~~~Gv~v~  361 (396)
T PRK02627        313 YLRAKLRELLE----KYPGIK----------EVRGLGLMIGIELDR--PAAEIVKKALEKGLLIN  361 (396)
T ss_pred             HHHHHHHHHHH----hCCCee----------eeccCcEEEEEEecC--cHHHHHHHHHHCCeEEe
Confidence            66665554310    011110          012356788888732  34677777766676554

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.58  E-value=8.5e-14  Score=131.08  Aligned_cols=223  Identities=15%  Similarity=0.167  Sum_probs=139.1

Q ss_pred             CchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      .+...+|++.++++++.  ++.++++++++++..++..+ +||+|+++.|.|.......+                    
T Consensus        54 ~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~  132 (337)
T PRK03967         54 HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGE  132 (337)
T ss_pred             CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHH
Confidence            34567899999999984  35666666688887666545 89999999999875432221                    


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---cc-CCCeEEEeccccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---LE-LGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~~-~~~Di~~~S~sK~l~g~~~  160 (339)
                                                 ++|.+++ ++|+++|+|++|........   .. ..--|++.||||.++.+| 
T Consensus       133 ~l~~~~~~~~~v~~~~P~NPtG~~~~~~~l~~i~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-  210 (337)
T PRK03967        133 RIAEKAKNASAVFICSPNNPTGNLQPEEEILKVL-ETGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAG-  210 (337)
T ss_pred             HHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHH-hcCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchh-
Confidence                                       8888998 47999999999964221111   11 112488899999998666 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  237 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~  237 (339)
                      .+.||+++++ ++++.++.....  +..+.+...++...++   .+.++++...++.+.+.+.|..+      .+|    
T Consensus       211 lRiG~iv~~~-~~i~~~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~----  277 (337)
T PRK03967        211 IRAGYAIANE-EIIDALYRIKPP--FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY------AYP----  277 (337)
T ss_pred             hhheeeecCH-HHHHHHHhhcCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC------cCC----
Confidence            4567888764 677777765432  3345544444443333   33444445555666677777653      122    


Q ss_pred             CCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE
Q 019543          238 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  317 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis  317 (339)
                                  +.+..+++.++       +.+.|...|+.++.+.       .                 ...+.+||+
T Consensus       278 ------------~~~~~~~~~~~-------~~~~l~~~gi~v~~~~-------~-----------------~~~~~~Ri~  314 (337)
T PRK03967        278 ------------SDANFLLLKLD-------AYDYLLENGIVVRKLS-------G-----------------RLEGHIRVT  314 (337)
T ss_pred             ------------CCCcEEEEhHH-------HHHHHHHCCEEEEeCC-------C-----------------CCCCeEEEe
Confidence                        13455665542       3445545577665221       0                 123689999


Q ss_pred             eccC-CHHHHHHHHHHHHh
Q 019543          318 VGIE-DVNDLISDLDKALR  335 (339)
Q Consensus       318 vg~e-~~~~li~~l~~al~  335 (339)
                      ++.. +.+.+++.|.+..+
T Consensus       315 ~~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        315 VGKREENDEFIKALKEIKE  333 (337)
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            9974 45666666665544

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.58  E-value=5.5e-14  Score=129.88  Aligned_cols=167  Identities=19%  Similarity=0.117  Sum_probs=108.4

Q ss_pred             CchHHHHHHHHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHH----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRL----------------------  109 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~----------------------  109 (339)
                      ....+++|+.+|+++|++++++ ++++++|+.+ +.++++|||+|+++++.|......                      
T Consensus        58 ~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~  137 (294)
T cd00615          58 TGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIA  137 (294)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcC
Confidence            4468999999999999998887 5555788875 556899999999988765432211                      


Q ss_pred             -----------HH----------------------HHHHHHHHHcCCEEEEeCCcCCCCCc------CcccCCCeEEEec
Q 019543          110 -----------LS----------------------RKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHS  150 (339)
Q Consensus       110 -----------~~----------------------~~I~~la~~~g~~livD~a~a~g~~~------~~~~~~~Di~~~S  150 (339)
                                 ++                      ++|+++|++||+++++|++|+.....      .....++|+++.|
T Consensus       138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S  217 (294)
T cd00615         138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQS  217 (294)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEc
Confidence                       10                      99999999999999999999754211      1224588999999


Q ss_pred             cccccccCCCceEEEEEEcCh-hHHHHHHHHHHhcC-CCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHh
Q 019543          151 ATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNAEG-SGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~-~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~  222 (339)
                      ++|+++|+  ..||++..+++ ...+++......+. +..+....+.+..+++.    -.+++++..++++.++++++
T Consensus       218 ~hK~l~g~--~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         218 THKTLPAL--TQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN  293 (294)
T ss_pred             hhcccchH--hHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            99999854  34677766543 12233443333333 33332222212222221    24456666677777777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PLN02231 alanine transaminase

Probab=99.58  E-value=1.2e-12  Score=129.96  Aligned_cols=172  Identities=15%  Similarity=0.183  Sum_probs=105.9

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHH-hc-CCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVTH-LL-GTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~-ll-~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++.+.+.+.+..|    .+++++++++++|+..++. ++ .+||.|+++.|.|......+.                 
T Consensus       172 ~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~  251 (534)
T PLN02231        172 GLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGW  251 (534)
T ss_pred             HHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCC
Confidence            334444444443334    3567777777999987665 55 479999999998875542221                 


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--Cc---c-cC-
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RP---L-EL-  142 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~---~-~~-  142 (339)
                                                                ++|+++|++||++||+||+|..-++.  .+   + .. 
T Consensus       252 ~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~  331 (534)
T PLN02231        252 GLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVA  331 (534)
T ss_pred             CCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHH
Confidence                                                      88999999999999999999754331  11   1 00 


Q ss_pred             ---C------CeEEEeccccccc-cCCCceEEEEEEc--ChhHHHHHHHHHHhcCCCCChHH---HHHHHh-------ch
Q 019543          143 ---G------ADIVMHSATKFIA-GHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFD---CWICLR-------GV  200 (339)
Q Consensus       143 ---~------~Di~~~S~sK~l~-g~~~~~gG~v~~~--~~~l~~~l~~~~~~~~~~~~~~~---a~~~~~-------~l  200 (339)
                         +      .-|+++|+||.+. .+| .++||+++.  ++++.+.+...... ..+.+...   +..++.       ..
T Consensus       332 ~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y  409 (534)
T PLN02231        332 RSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVASV-NLCSNISGQILASLVMSPPKPGDESY  409 (534)
T ss_pred             hhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHhCCCCCCcchH
Confidence               1      1267889999874 344 567777652  45677777665432 22222222   222221       11


Q ss_pred             hh----HHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          201 KT----MALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       201 ~~----~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      +.    .+..++.+.++++.+.+.|+++++++
T Consensus       410 ~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~  441 (534)
T PLN02231        410 ESYMAEKDGILSSLARRAKTLEDALNSLEGVT  441 (534)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            11    11224567788888999999887764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.57  E-value=2e-13  Score=131.76  Aligned_cols=166  Identities=15%  Similarity=0.118  Sum_probs=119.4

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHH-HHHHHHHHhcC----CCCEEEEcCCCccchHHHHH---------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGM-AALAAVTHLLG----TGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~-~A~~~il~ll~----~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...++||+.+++++|.+   .++++++|+ .++.+++..++    +||+||++...+..+...+.               
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~  184 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDG  184 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecC
Confidence            46789999999999987   799999999 57775554444    69999998765443322111               


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc------CcccC-CC
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS------RPLEL-GA  144 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~------~~~~~-~~  144 (339)
                                                              ++|.++|++||+++++|+||+.+...      ..... .+
T Consensus       185 ~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Gra  264 (444)
T TIGR03531       185 DELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRV  264 (444)
T ss_pred             cCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCC
Confidence                                                    99999999999999999999865421      22233 36


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-CCCh-HHHHH--HHhchhhHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAP-FDCWI--CLRGVKTMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-~~~~-~~a~~--~~~~l~~~~~r~~~~~~~a~~l~~~  220 (339)
                      |++++|++|++..+++  ||+++++++++.+.++..  +.+. ..++ ..+++  ...+.+.+.+.++++.++++++.+.
T Consensus       265 d~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~--y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~  340 (444)
T TIGR03531       265 DAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKS--YPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKEL  340 (444)
T ss_pred             CeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHh--ccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987654  788888777777766543  1221 1122 22332  2345677888888888999999998


Q ss_pred             HhCC
Q 019543          221 LASH  224 (339)
Q Consensus       221 L~~~  224 (339)
                      |+++
T Consensus       341 L~~l  344 (444)
T TIGR03531       341 LQKL  344 (444)
T ss_pred             HHHH
Confidence            8865

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR01814 kynureninase kynureninase

Probab=99.56  E-value=2.9e-13  Score=130.67  Aligned_cols=179  Identities=15%  Similarity=0.090  Sum_probs=107.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HHh------
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNA------  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~------  183 (339)
                      ++|.++|+++|+++++|++|+.|... +...+++|++++|.+|+++|+.+  ||+++.++ .. ..+... ...      
T Consensus       191 ~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG--~~l~v~~~-~~-~~~~p~~~g~~~~~~~  266 (406)
T TIGR01814       191 AAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG--AGAFVHEK-HA-HTERPRLAGWWGHARP  266 (406)
T ss_pred             HHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC--eEEEEehh-hh-hhcCCCCCcccCCCCc
Confidence            99999999999999999999998653 33357899999999999975432  44444332 22 222110 000      


Q ss_pred             --------cC-------CCCChHHH-HHHHhchhhH-----HHHHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCC
Q 019543          184 --------EG-------SGLAPFDC-WICLRGVKTM-----ALRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEH  238 (339)
Q Consensus       184 --------~~-------~~~~~~~a-~~~~~~l~~~-----~~r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~  238 (339)
                              ++       .+.++... +.+..+++.+     +...++..+..+++.+.|++.    ++++. ..|.   +
T Consensus       267 ~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i-~~~~---~  342 (406)
T TIGR01814       267 TRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTI-ITPR---D  342 (406)
T ss_pred             cccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEE-eCCC---C
Confidence                    00       11222222 2222233332     334455566677777777664    23432 2221   1


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                      +         ...+++++|.+.  ....++.+.|...|+.+...                           .++.||+|+
T Consensus       343 ~---------~~r~~~v~~~~~--~~~~~~~~~L~~~gi~v~~~---------------------------~~~~iRiS~  384 (406)
T TIGR01814       343 H---------AQRGCQLSLTHP--VPGKAVFQALIKRGVIGDKR---------------------------EPSVIRVAP  384 (406)
T ss_pred             h---------hhcCCeEEEEec--CCHHHHHHHHHHCCEEEecc---------------------------CCCeEEEec
Confidence            1         114678888875  12345666666666654210                           235799999


Q ss_pred             -ccCCHHHHHHHHHHHHhc
Q 019543          319 -GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       319 -g~e~~~~li~~l~~al~~  336 (339)
                       +..++++.|+.+.++|++
T Consensus       385 ~~~~nt~~did~l~~~l~~  403 (406)
T TIGR01814       385 VPLYNTFVDVYDAVNVLEE  403 (406)
T ss_pred             hhccCCHHHHHHHHHHHHH
Confidence             578888889999998875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.55  E-value=9.8e-14  Score=131.40  Aligned_cols=206  Identities=24%  Similarity=0.241  Sum_probs=126.7

Q ss_pred             CCchHHHHHH----HHHhHhCCC----eEEE-cCcHHHHHHHH-HHhcCCCCEEEEcCCCccchH---------------
Q 019543           53 GNPTRDALES----LLAKLDKAD----RALC-FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~----~~l~-~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~---------------  107 (339)
                      +....+++|+    ++.++|+++    .+-+ .-||+.|+.++ .+|++|||.|+..+...+|..               
T Consensus        60 G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~  139 (399)
T PF00464_consen   60 GCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG  139 (399)
T ss_dssp             STHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence            4555666554    566799999    7766 55999999864 569999999998765433221               


Q ss_pred             HHHH-------------------------------------------HHHHHHHHHcCCEEEEeCCcC-----CCCCcCc
Q 019543          108 RLLS-------------------------------------------RKIAEMAHAHGALLLVDNSIM-----SPVLSRP  139 (339)
Q Consensus       108 ~~~~-------------------------------------------~~I~~la~~~g~~livD~a~a-----~g~~~~~  139 (339)
                      ..++                                           +++.++|++.|++|++|.+|-     .|.+.+|
T Consensus       140 ~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P  219 (399)
T PF00464_consen  140 LYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNP  219 (399)
T ss_dssp             HHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--G
T ss_pred             ceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCc
Confidence            0000                                           999999999999999999993     5667788


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEc-------------ChhHHHHHHHHHHhcCCCCChH---HHHHHH---hch
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVK-------------GERLAKELYFLQNAEGSGLAPF---DCWICL---RGV  200 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~-------------~~~l~~~l~~~~~~~~~~~~~~---~a~~~~---~~l  200 (339)
                      ++. +|++++|.+|+|.||   .||+|.++             ++++.+++.+.. +.+..-+|.   .++++.   ..+
T Consensus       220 ~~~-ADvvt~sThKtl~GP---rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~av-fP~~qg~~h~~~iaalAval~ea~  294 (399)
T PF00464_consen  220 FPY-ADVVTGSTHKTLRGP---RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAV-FPGLQGGPHMHRIAALAVALKEAL  294 (399)
T ss_dssp             CCT-SSEEEEESSGGG-SS---S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHH-TTTT-SS--HHHHHHHHHHHHHHT
T ss_pred             ccc-ceEEEeecccccccc---CceEEEEcCCccccCCcccccHHHHHHHhcccc-CCCcccCcchhHHHHHHHHHhccc
Confidence            886 999999999999976   58999998             456777776543 222222222   122222   112


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceee
Q 019543          201 -KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSIT  278 (339)
Q Consensus       201 -~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~  278 (339)
                       ..+.+..++..+|++.|++.|.+. +++.+.  +              ...++++.+.+.+. -...+..+.|...||.
T Consensus       295 ~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~--g--------------gTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~  357 (399)
T PF00464_consen  295 SPEFKEYAKQVVKNAKALAEALQER-GFKVVT--G--------------GTDNHQVLVDLRSFGIDGKEAEKALEEAGII  357 (399)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGG--G--------------S-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEE--C--------------CCCCCeEEEEecccccchHHHHHHHHhcCee
Confidence             235778888899999999999986 343221  1              23578888887432 1233444455556666


Q ss_pred             cc
Q 019543          279 VS  280 (339)
Q Consensus       279 v~  280 (339)
                      ++
T Consensus       358 vn  359 (399)
T PF00464_consen  358 VN  359 (399)
T ss_dssp             -E
T ss_pred             ec
Confidence            65

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.55  E-value=3.7e-13  Score=127.03  Aligned_cols=242  Identities=15%  Similarity=0.200  Sum_probs=157.4

Q ss_pred             ccCCCCchHHHHHHHHHhHhC-CC-eEEEcCcH-HHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           49 YTRSGNPTRDALESLLAKLDK-AD-RALCFTSG-MAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g-~~-~~l~~~sG-~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +.|+-.+...+|++.+++++| .+ +.++...| .+.+..+. .++.|||.|++..++|.......+             
T Consensus        51 ~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~  130 (356)
T COG0079          51 LNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE  130 (356)
T ss_pred             hccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc
Confidence            556667788999999999999 44 34454555 56666554 488999999999998864432111             


Q ss_pred             ----------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCcCcc---cCCC-eEEEecc
Q 019543          112 ----------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLSRPL---ELGA-DIVMHSA  151 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~--g~~livD~a~a~g~~~~~~---~~~~-Di~~~S~  151 (339)
                                                        ++|.++++..  +.+||+|||+........+   ...- =+++-||
T Consensus       131 ~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTf  210 (356)
T COG0079         131 FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTF  210 (356)
T ss_pred             cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEec
Confidence                                              6666666654  8899999999643221111   1122 3788899


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR---GVKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~---~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ||.+|-.| .+.|+.+++ +++++.++..+.-++  ++-...+++..   .-+.+....++..+..+++.+.|+.++ +.
T Consensus       211 SKa~gLAG-lRlGy~ia~-~~~i~~l~~vr~p~~--v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~  285 (356)
T COG0079         211 SKAFGLAG-LRVGYAIAN-PELIAALNKVRPPFN--VSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LF  285 (356)
T ss_pred             HHhhhcch-hceeeccCC-HHHHHHHHHhcCCCC--CCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence            99999766 556787766 478888888765443  33333333332   224567777888888999999999886 43


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                      .+ +|+                .+..+-+.+++.. +..+.+.|...|+.++.-..                      .|
T Consensus       286 ~v-~pS----------------~aNFvlv~~~~~~-~~~l~~~L~~~giivR~~~~----------------------~~  325 (356)
T COG0079         286 GV-FPS----------------QANFVLVRVPDAE-AAALAEALLKKGILVRDCSS----------------------VG  325 (356)
T ss_pred             ee-cCC----------------CCcEEEEECCCcc-HHHHHHHHHHCCEEEEeCCC----------------------CC
Confidence            22 342                3556666665533 55778888778888773210                      01


Q ss_pred             CCCCeEEEEeccCCH-HHHHHHHHHHHh
Q 019543          309 LTEDLVRISVGIEDV-NDLISDLDKALR  335 (339)
Q Consensus       309 ~~~~~lRisvg~e~~-~~li~~l~~al~  335 (339)
                      ..++.+||++|.++. +.+++.|.+.++
T Consensus       326 ~~~~~lRitvgt~een~~ll~AL~~~~~  353 (356)
T COG0079         326 LLPGYLRITVGTPEENDRLLAALREVLK  353 (356)
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            245789999997554 444555544443

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.55  E-value=7.7e-13  Score=127.62  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhHhC--------CCeEE--EcCcHHHHHHHHH----HhcCCCCEEEEcCCCccchHHHHH-----------
Q 019543           57 RDALESLLAKLDK--------ADRAL--CFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~~~l--~~~sG~~A~~~il----~ll~~GD~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      ..+|++.+++++.        .++++  .+++|+.|+..++    .+++|||+|++++|.|+.....++           
T Consensus        74 ~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l  153 (404)
T PTZ00376         74 LQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRY  153 (404)
T ss_pred             CHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccc
Confidence            3466666666542        23444  3666678876432    467999999999998876543222           


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC------cc
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR------PL  140 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~------~~  140 (339)
                                                                   ++|+++|++||++||+|++|....+..      ..
T Consensus       154 ~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~  233 (404)
T PTZ00376        154 YDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAI  233 (404)
T ss_pred             cCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHH
Confidence                                                         889999999999999999996443321      01


Q ss_pred             ---c-CC-CeEEEeccccccccCCCceEEEEE--EcChhHHHHHH----HHHHhcCCCCChHHHHHHHhchhh-------
Q 019543          141 ---E-LG-ADIVMHSATKFIAGHSDVMAGVLA--VKGERLAKELY----FLQNAEGSGLAPFDCWICLRGVKT-------  202 (339)
Q Consensus       141 ---~-~~-~Di~~~S~sK~l~g~~~~~gG~v~--~~~~~l~~~l~----~~~~~~~~~~~~~~a~~~~~~l~~-------  202 (339)
                         . .. --|+++||||.++.+|.++| |++  ..++++.+.+.    ..........+.+...++...|+.       
T Consensus       234 ~~~~~~~~~vi~i~SfSK~~~~~GlRvG-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  312 (404)
T PTZ00376        234 RLFAERGVEFLVAQSFSKNMGLYGERIG-ALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEW  312 (404)
T ss_pred             HHHHhcCCcEEEEEeCCCcccccccccc-eEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHH
Confidence               1 11 23888999999998776655 552  33445554443    222222233344444444333322       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhCC
Q 019543          203 ---MALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       203 ---~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                         +....++.+++.+.+.+.|+++
T Consensus       313 ~~~~~~~~~~~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        313 LSELKEMSGRIQNMRQLLYDELKAL  337 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               2223345567777788888775

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.54  E-value=6.5e-13  Score=138.17  Aligned_cols=265  Identities=16%  Similarity=0.077  Sum_probs=151.4

Q ss_pred             CCchHHHHHHHHHhHhCCC--e-EEEcCc-HHHHHHHHHH-h-cCCCCEEEEcCCCccchH-------------------
Q 019543           53 GNPTRDALESLLAKLDKAD--R-ALCFTS-GMAALAAVTH-L-LGTGEEIVAGDDLYGGTD-------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~-~l~~~s-G~~A~~~il~-l-l~~GD~Vi~~~~~y~~~~-------------------  107 (339)
                      .....++.++++++++|++  + .++|++ +++|+..+.. + +++||+|+++...|....                   
T Consensus        76 ~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~  155 (805)
T PLN02724         76 SSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIE  155 (805)
T ss_pred             HHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccch
Confidence            3456789999999999973  3 455555 5888876544 4 689999999643221110                   


Q ss_pred             ---------------------H-----------------HHH--------------HHHHHHHHHc--------CCEEEE
Q 019543          108 ---------------------R-----------------LLS--------------RKIAEMAHAH--------GALLLV  127 (339)
Q Consensus       108 ---------------------~-----------------~~~--------------~~I~~la~~~--------g~~liv  127 (339)
                                           .                 ++.              +.|..+++.+        ++++++
T Consensus       156 ~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~v  235 (805)
T PLN02724        156 EAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLL  235 (805)
T ss_pred             hccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEe
Confidence                                 0                 000              5443334322        368999


Q ss_pred             eCCcCCCCCc-CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH------------------------H
Q 019543          128 DNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------------------------N  182 (339)
Q Consensus       128 D~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------------------------~  182 (339)
                      |.+|+.|... +...+++|++++|++|++|+|.+  .|+++.++ ++.+.+....                        +
T Consensus       236 DaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~G~L~vr~-~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~r  312 (805)
T PLN02724        236 DAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--LGALLVRR-DAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQR  312 (805)
T ss_pred             ehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--ceEEEEeh-hhhhhhcCCccCCCceEEEecccceeeccccHHHH
Confidence            9999988753 44457899999999999997743  46777775 4544443210                        0


Q ss_pred             hcCCCCChHHHHHHHhchhhH-----HHHHHHHHHHHHHHHHHHhCCC------CceEEecCCC-CCCCchHhHhhhcCC
Q 019543          183 AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHP------RVKKVNYAGL-PEHPGHELHYSQAKG  250 (339)
Q Consensus       183 ~~~~~~~~~~a~~~~~~l~~~-----~~r~~~~~~~a~~l~~~L~~~~------~i~~v~~p~~-~~~~~~~~~~~~~~~  250 (339)
                      +...+.+......+..+++.+     +...++..+.++++.+.|++++      +|+ ++.|.- ..++         ..
T Consensus       313 fE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~-iyg~~~~~~~~---------~~  382 (805)
T PLN02724        313 FEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCV-LYGNHTFKLEF---------HI  382 (805)
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEE-EcCCCCCCCCc---------cc
Confidence            111112221111222233332     2233444566778888888775      342 332310 0000         12


Q ss_pred             CcceEEEeeCCHH---H-HHHHHccCCcceeecccCCcccceeccccccCCC---CCHHHHH---------------hCC
Q 019543          251 AGSVLSFLTGSLA---L-SKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS---IPVEVRQ---------------ARG  308 (339)
Q Consensus       251 ~~~ivs~~~~~~~---~-~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~---~~~~~~~---------------~~g  308 (339)
                      .+++++|.+.+..   - ...+...+..++|.++.|.      +|+...|..   +..+...               -.|
T Consensus       383 r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~------~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~  456 (805)
T PLN02724        383 QGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC------FCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHG  456 (805)
T ss_pred             ccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc------ccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecC
Confidence            6799999874321   0 1112222345789999775      444333321   1111000               012


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...+.||+|+|..++++.|+.|.++|++
T Consensus       457 ~~~G~vRvS~g~ynt~eDvd~lv~~l~~  484 (805)
T PLN02724        457 RPTGAVRVSFGYMSTFEDCQKFIDFIIS  484 (805)
T ss_pred             cccceEEEEcCccCCHHHHHHHHHHHHH
Confidence            2348999999999999999999999975

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.52  E-value=1.2e-12  Score=125.92  Aligned_cols=234  Identities=16%  Similarity=0.220  Sum_probs=141.2

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc-----------CCCCEEEEcCCCccchH---------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL-----------GTGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll-----------~~GD~Vi~~~~~y~~~~---------------  107 (339)
                      ++..+.+|+.++++.+.+.+++++||+.|+...+.++           ..++.|++.+..|+|..               
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~  151 (400)
T PTZ00125         72 NDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN  151 (400)
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence            5678899999999999899999999999997544322           13467776655444321               


Q ss_pred             --------------------HHHH--------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-
Q 019543          108 --------------------RLLS--------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP-  139 (339)
Q Consensus       108 --------------------~~~~--------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~-  139 (339)
                                          ..+.                          ++|.++|++||+++|+||+|. .|..+.. 
T Consensus       152 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~  231 (400)
T PTZ00125        152 FGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL  231 (400)
T ss_pred             CCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence                                0000                          889999999999999999984 3322221 


Q ss_pred             ----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHH
Q 019543          140 ----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDN  213 (339)
Q Consensus       140 ----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~  213 (339)
                          .....|+++  ++|++++... ..|++++++ ++.+.+.......+...+|..++++...|+.+.  ...++..+.
T Consensus       232 ~~~~~~~~pd~~~--~sK~l~~g~~-~ig~v~~~~-~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~  307 (400)
T PTZ00125        232 AHDHEGVKPDIVL--LGKALSGGLY-PISAVLAND-DVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL  307 (400)
T ss_pred             HHHhcCCCCCEEE--EcccccCCCc-CcEEEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                112347665  6799986432 346777765 666665432222233456766666655555442  223344455


Q ss_pred             HHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccc
Q 019543          214 AQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       214 a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      .+++.+.|++.    +.+..+                  ++.|.++++.+..  .....+|.+.|...|+.+.       
T Consensus       308 ~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~-------  362 (400)
T PTZ00125        308 GEVFRDGLKELLKKSPWVKEI------------------RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAK-------  362 (400)
T ss_pred             HHHHHHHHHHHHhcCCCeEEE------------------ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEe-------
Confidence            66666666543    211111                  2356788887743  3345677877766666543       


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC----HHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED----VNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~----~~~li~~l~~al~~  336 (339)
                         |.                 .++.|||+..+..    .++.++.|.++|++
T Consensus       363 ---~~-----------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        363 ---PT-----------------HDNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             ---ec-----------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence               21                 2367999976544    44445555555443

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.51  E-value=4.6e-13  Score=124.09  Aligned_cols=176  Identities=18%  Similarity=0.165  Sum_probs=123.5

Q ss_pred             CcccCC--CCchHHHHHHHHHhHhCC----C-eEEEcCcHHHHHH-HHHHhcCCCCEEEEcCCCccchHHHHH-------
Q 019543           47 YDYTRS--GNPTRDALESLLAKLDKA----D-RALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-------  111 (339)
Q Consensus        47 ~~y~r~--~~~~~~~le~~la~~~g~----~-~~l~~~sG~~A~~-~il~ll~~GD~Vi~~~~~y~~~~~~~~-------  111 (339)
                      ..|+|+  ..++++.|.+.+++++|.    + +++++.++++|+. +++.++.+||+|++.+|.|+.....+.       
T Consensus        63 ~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv  142 (420)
T KOG0257|consen   63 NQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPV  142 (420)
T ss_pred             ccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcce
Confidence            345554  446788999999998874    2 4677777799998 677899999999999997765543222       


Q ss_pred             ----------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-
Q 019543          112 ----------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-  138 (339)
Q Consensus       112 ----------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-  138 (339)
                                                                          ++|+++|++||+++|.|++|...++.. 
T Consensus       143 ~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~  222 (420)
T KOG0257|consen  143 FVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGN  222 (420)
T ss_pred             eeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCC
Confidence                                                                899999999999999999986433211 


Q ss_pred             --------cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHHHHHHH---hc-------
Q 019543          139 --------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICL---RG-------  199 (339)
Q Consensus       139 --------~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~a~~~~---~~-------  199 (339)
                              |-.+...+-++|++|+++..|+.+| |+++ ++.+...++....... ++.+|...+.+.   ..       
T Consensus       223 ~h~r~aslPgm~ertitvgS~gKtf~~TGWrlG-W~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~  300 (420)
T KOG0257|consen  223 KHIRIASLPGMYERTITVGSFGKTFGVTGWRLG-WAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPG  300 (420)
T ss_pred             cceeeecCCchhheEEEeccccceeeeeeeeee-eeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCc
Confidence                    1112346899999999999888765 5656 4577777766654332 333444322211   11       


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          200 -VKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       200 -l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                       +..+..+.+...++.+.+++.|.++
T Consensus       301 ~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  301 GSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhc
Confidence             1234457778889999999999987

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.49  E-value=1.3e-12  Score=128.63  Aligned_cols=242  Identities=18%  Similarity=0.172  Sum_probs=144.0

Q ss_pred             chHHHHHHHHHhHhCCCeEEEc-CcHHHHHH-H-H-H--HhcCCCC----EEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLDKADRALCF-TSGMAALA-A-V-T--HLLGTGE----EIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~-~sG~~A~~-~-i-l--~ll~~GD----~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ....++++.+++++|.+.+.++ ++|..+.. . . +  .++++||    +|+++++.|+.....+.             
T Consensus       113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~  192 (481)
T PRK04366        113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE  192 (481)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC
Confidence            5678889999999998765555 45544433 2 1 2  2467787    99999887765543222             


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC--cCcccCCCeEEEeccccc
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKF  154 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~--~~~~~~~~Di~~~S~sK~  154 (339)
                                                         ++|+++|+++|+++++|+++..+..  .++..+|+|++++|.+|+
T Consensus       193 ~~~~D~e~L~~~i~~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~  272 (481)
T PRK04366        193 DGLVDLEALKAAVGEDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKT  272 (481)
T ss_pred             CCCcCHHHHHhhcccCCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhh
Confidence                                               8899999999999999999964422  255567999999999999


Q ss_pred             cccC---CCceEEEEEEcChhHHHHHHHH-------H------------HhcCCCCChH---HHHH--HHhchhhHHHHH
Q 019543          155 IAGH---SDVMAGVLAVKGERLAKELYFL-------Q------------NAEGSGLAPF---DCWI--CLRGVKTMALRV  207 (339)
Q Consensus       155 l~g~---~~~~gG~v~~~~~~l~~~l~~~-------~------------~~~~~~~~~~---~a~~--~~~~l~~~~~r~  207 (339)
                      |++|   |+.-+|++++++ .+.+++...       .            +.-.+.-+..   .++.  ...+.+.+.+..
T Consensus       273 l~~P~g~Ggp~~G~l~~~~-~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a  351 (481)
T PRK04366        273 FSTPHGGGGPGSGPVGVKE-ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVS  351 (481)
T ss_pred             cCCCCCCCCCCeeeeeehh-hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9866   223467888775 455444200       0            0000000001   1111  112223344445


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE---eeCCHHHHHHHHccCCcceeecccCCc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF---LTGSLALSKHVVETTKYFSITVSFGSV  284 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~---~~~~~~~~~~~~~~L~~~~i~v~~G~~  284 (339)
                      ++..++++++++.|+++..+   .++.    +.         -...++.+   ...+ ..+.++.++|...|+.+.  . 
T Consensus       352 ~~~~~~a~~l~~~L~~~~~~---~~~~----~~---------~~~~~~~~~~~~~~g-~~~~~v~~~L~~~Gi~~~--~-  411 (481)
T PRK04366        352 EDAVLNANYLKARLKDIYDL---PYDR----PC---------MHEFVLSGKKLKETG-VRTLDIAKRLLDYGFHPP--T-  411 (481)
T ss_pred             HHHHHHHHHHHHHhHhhCcc---cCCC----Ce---------eEEEEEECccccccC-CCHHHHHHHHHHCCccCC--c-
Confidence            66677889999999876222   1211    10         01122322   1111 134567777877676533  1 


Q ss_pred             ccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          285 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       285 ~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         ...|.                ..++.+|+|++..++++.|+.|.++|++
T Consensus       412 ---~~~p~----------------~~~~~l~is~~e~~t~edid~l~~~l~~  444 (481)
T PRK04366        412 ---IYFPL----------------IVPEALMIEPTETESKETLDAFIAAMKQ  444 (481)
T ss_pred             ---ccccc----------------ccCCeEEEcccCCCCHHHHHHHHHHHHH
Confidence               11221                1246899999998777777777777754

>PLN02397 aspartate transaminase

Probab=99.49  E-value=5.1e-12  Score=122.62  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=67.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC------c---cc-CC-CeEEEeccccccccCCCceEEEE-EEcChhHHHHHH-
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSR------P---LE-LG-ADIVMHSATKFIAGHSDVMAGVL-AVKGERLAKELY-  178 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~------~---~~-~~-~Di~~~S~sK~l~g~~~~~gG~v-~~~~~~l~~~l~-  178 (339)
                      ++|+++|++||++||+|++|..-.+..      .   .. .+ --|+++||||.++.+|.++|.++ +..++++.+.+. 
T Consensus       217 ~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~  296 (423)
T PLN02397        217 EQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKS  296 (423)
T ss_pred             HHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHH
Confidence            889999999999999999996544321      1   11 11 13788999999998787665443 243444444333 


Q ss_pred             ---HHHHhcCCCCChHHHHHHHhchhh----------HHHHHHHHHHHHHHHHHHHhCC
Q 019543          179 ---FLQNAEGSGLAPFDCWICLRGVKT----------MALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       179 ---~~~~~~~~~~~~~~a~~~~~~l~~----------~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                         ...+....+.+...+.++...|+.          +...+++..++.+.+.+.|+++
T Consensus       297 ~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        297 QLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               222222223344333333322222          2334556667778888888876

>PLN02624 ornithine-delta-aminotransferase

Probab=99.49  E-value=3.6e-12  Score=125.21  Aligned_cols=236  Identities=16%  Similarity=0.207  Sum_probs=141.9

Q ss_pred             CCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcC---------C-CC-EEEEcCCCccchH------------
Q 019543           51 RSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLG---------T-GE-EIVAGDDLYGGTD------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~---------~-GD-~Vi~~~~~y~~~~------------  107 (339)
                      +..++...+|+++|+++++.+.+++++||+.|+...+.+.+         + |. .|+.....|+|..            
T Consensus       113 ~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~  192 (474)
T PLN02624        113 AFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA  192 (474)
T ss_pred             ccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence            34567788999999999988899999999999975432111         1 33 3555444444430            


Q ss_pred             -----------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcC-CCC
Q 019543          108 -----------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIM-SPV  135 (339)
Q Consensus       108 -----------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a-~g~  135 (339)
                                             ..++                            ++|.++|++||+++|+||+|. .|.
T Consensus       193 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~Gr  272 (474)
T PLN02624        193 TRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLAR  272 (474)
T ss_pred             cccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCc
Confidence                                   1111                            899999999999999999995 222


Q ss_pred             CcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHH
Q 019543          136 LSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVE  208 (339)
Q Consensus       136 ~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~  208 (339)
                      .+...     ....|+++  ++|.+++.+.. .|+++.++ ++.+.+.......+.+.+|...+.+...|+.+..  ..+
T Consensus       273 tG~~~a~~~~~i~pDiv~--lsK~lggG~~p-igav~~~~-~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~  348 (474)
T PLN02624        273 TGKMLACDWEEVRPDVVI--LGKALGGGVIP-VSAVLADK-DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAE  348 (474)
T ss_pred             CcchhhHHhcCCCCCEEE--ecccccCCCCc-ceeeeecH-HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHH
Confidence            22211     22346666  68999965433 45666653 5555443222112235677777766666665532  233


Q ss_pred             HHHHHHHHHHHHHhCC----CC-ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC----HHHHHHHHccCCcceeec
Q 019543          209 KQQDNAQKIAEFLASH----PR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSITV  279 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~----~~-i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~----~~~~~~~~~~L~~~~i~v  279 (339)
                      +..+..+++.+.|+.+    +. +..                  .++.|.++.|.++.    ...+.++++.|.+.|+.+
T Consensus       349 ~~~~~~~~l~~~L~~l~~~~~~~i~~------------------vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v  410 (474)
T PLN02624        349 RSAKLGQELRDQLQKIQKQFPKLIKE------------------VRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLA  410 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEE------------------EEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEE
Confidence            3344555666655542    21 111                  12467788887753    244667888887777654


Q ss_pred             ccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          280 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       280 ~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ..+                           ..+.|||++.+..+++.|+.+.+.|+
T Consensus       411 ~p~---------------------------~~~~lR~~p~l~~t~e~id~~l~~L~  439 (474)
T PLN02624        411 KPT---------------------------HDTIIRLAPPLSISEDELQECSKALS  439 (474)
T ss_pred             ecC---------------------------CCCEEEEECCccCCHHHHHHHHHHHH
Confidence            321                           23679999776666655555555443

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.48  E-value=7.2e-12  Score=120.52  Aligned_cols=167  Identities=16%  Similarity=0.105  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhHh----C----CCeE--EEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLD----K----ADRA--LCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~--l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+|++.+++++    +    .++.  ++++++++|+..++.   .++|||+|++++|.|++....++            
T Consensus        71 ~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~  150 (396)
T PRK09257         71 LAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYY  150 (396)
T ss_pred             CHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEecc
Confidence            345566666553    2    2333  566666899976542   35899999999999876653332            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--C---cc--
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--R---PL--  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~---~~--  140 (339)
                                                                  ++|+++|++||++||+|++|......  .   ++  
T Consensus       151 ~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  230 (396)
T PRK09257        151 DAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRA  230 (396)
T ss_pred             ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHH
Confidence                                                        89999999999999999999643321  1   11  


Q ss_pred             -c-C-CCeEEEeccccccccCCCceEEEEEE--cChhHH----HHHHHHHHhcCCCCChHHHHHHHhchh----------
Q 019543          141 -E-L-GADIVMHSATKFIAGHSDVMAGVLAV--KGERLA----KELYFLQNAEGSGLAPFDCWICLRGVK----------  201 (339)
Q Consensus       141 -~-~-~~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~----~~l~~~~~~~~~~~~~~~a~~~~~~l~----------  201 (339)
                       . . .--|+++||||.++.+|.+. ||+++  .+.+..    ..++...+......++....++...|+          
T Consensus       231 ~~~~~~~vi~i~SfSK~~~~~GlRi-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  309 (396)
T PRK09257        231 FAAAGLELLVASSFSKNFGLYGERV-GALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEA  309 (396)
T ss_pred             HHhcCCcEEEEEEcCCcCccccccc-eeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHH
Confidence             1 1 12488999999999777554 56552  333322    223222222223334444333322221          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          202 TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .+...+++.+++.+.+.+.|+++
T Consensus       310 ~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        310 ELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            23334555667777888888775

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.48  E-value=1.8e-11  Score=114.92  Aligned_cols=168  Identities=19%  Similarity=0.199  Sum_probs=117.7

Q ss_pred             chHHHHHHHHHhHhCCC--eE-EEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH--HHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD--RA-LCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD--RLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~-l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~--~~~~-----------------  111 (339)
                      ...+++.+.|..+++.+  ++ ++.+||+.|+.+ +.++++|||+|++..+-.+|-+  .+.+                 
T Consensus        38 ~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v  117 (383)
T COG0075          38 GIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAV  117 (383)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            35677888888889876  44 456788999975 6679999999999887544432  1111                 


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCC-CcCcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~-~~~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|+++|++||+++|||.+.+.|. ..+.-++|+|+++++..|++++
T Consensus       118 ~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~  197 (383)
T COG0075         118 DPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGA  197 (383)
T ss_pred             CHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccC
Confidence                                             999999999999999999988764 3456678999999999999998


Q ss_pred             CCCceEEEEEEcChhHHHHHH------------HHHHhc---C--CCCChHHHH-HHHhchhh-----HHHHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELY------------FLQNAE---G--SGLAPFDCW-ICLRGVKT-----MALRVEKQQDNA  214 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~------------~~~~~~---~--~~~~~~~a~-~~~~~l~~-----~~~r~~~~~~~a  214 (339)
                      |.+  .|++..+++ ..+.+.            .+..+.   +  ...+|.... .+..+|+.     ++.|.+++++++
T Consensus       198 PPG--la~v~~S~~-a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~  274 (383)
T COG0075         198 PPG--LAFVAVSER-ALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLA  274 (383)
T ss_pred             CCc--cceeEECHH-HHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            865  467777753 333332            111111   1  122333322 22223322     588899999999


Q ss_pred             HHHHHHHhCCC
Q 019543          215 QKIAEFLASHP  225 (339)
Q Consensus       215 ~~l~~~L~~~~  225 (339)
                      +.+++.++.+.
T Consensus       275 ~a~r~~~~alG  285 (383)
T COG0075         275 EALRAGLEALG  285 (383)
T ss_pred             HHHHHHHHHcC
Confidence            99999999764

>PRK08637 hypothetical protein; Provisional

Probab=99.47  E-value=1.1e-11  Score=118.91  Aligned_cols=220  Identities=14%  Similarity=0.156  Sum_probs=125.7

Q ss_pred             eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           72 RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      +.++++++++|+..++ .+++|||+|++++|.|+.....+.                                       
T Consensus        71 ~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~  150 (388)
T PRK08637         71 LPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIV  150 (388)
T ss_pred             eeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEE
Confidence            3466666688887655 478999999999998765543211                                       


Q ss_pred             ------------------HHHHHHHHH-----cCCEEEEeCCcCCCCCcC----c-cc----CCCe---EEEeccccccc
Q 019543          112 ------------------RKIAEMAHA-----HGALLLVDNSIMSPVLSR----P-LE----LGAD---IVMHSATKFIA  156 (339)
Q Consensus       112 ------------------~~I~~la~~-----~g~~livD~a~a~g~~~~----~-~~----~~~D---i~~~S~sK~l~  156 (339)
                                        ++|+++|++     |+++||+||+|..-.+..    + ..    ..-.   ++++|+||.++
T Consensus       151 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~  230 (388)
T PRK08637        151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF  230 (388)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCC
Confidence                              788888875     999999999986433211    1 11    1112   33459999988


Q ss_pred             cCCCceEEEEEEc-----ChhHHHHHHHHH----HhcCCCCChHHHHHHHhchhh--H----HHHHHHHHHHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVK-----GERLAKELYFLQ----NAEGSGLAPFDCWICLRGVKT--M----ALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       157 g~~~~~gG~v~~~-----~~~l~~~l~~~~----~~~~~~~~~~~a~~~~~~l~~--~----~~r~~~~~~~a~~l~~~L  221 (339)
                      .+|.+ .||++.+     ++.+.+.+....    +......+.+...++...|+.  +    ...+....++.+.+.+.|
T Consensus       231 ~pGlR-lG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l  309 (388)
T PRK08637        231 VWGFR-VGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVL  309 (388)
T ss_pred             Ccccc-eEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87754 5666653     346666664321    111223444444433333322  2    122223444455566666


Q ss_pred             hCCC---CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCC
Q 019543          222 ASHP---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       222 ~~~~---~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      +..+   ++.  .+|               ...|..+++.+++ ....+|++.| ++.|+.+..         .      
T Consensus       310 ~~~~~~~~~~--~~~---------------~~~g~~~~~~l~~-~~~~~l~~~l~~~~gv~~~~---------~------  356 (388)
T PRK08637        310 YDGKYDDAWQ--AYP---------------FNSGYFMCLKLKG-VDAEELRVHLLEKYGIGTIA---------L------  356 (388)
T ss_pred             HhhCCCCCcc--ccc---------------ccceEEEEecCCh-HHHHHHHHHHhhhcceEEEe---------c------
Confidence            5542   111  111               1134466667753 2456788877 456775431         0      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHhcC
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIE---DVNDLISDLDKALRTG  337 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~~~  337 (339)
                                  ..+.+||+++..   +.++-++.|.++++++
T Consensus       357 ------------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~  387 (388)
T PRK08637        357 ------------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL  387 (388)
T ss_pred             ------------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence                        235699999864   4455577777777654

>PLN02672 methionine S-methyltransferase

Probab=99.47  E-value=1.1e-11  Score=129.86  Aligned_cols=169  Identities=13%  Similarity=0.095  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHhHhCCC----eEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD----RALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~----~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ...+++.+++++.+|.+    +.+++++| ++++.. +.++++|||+|+++.|.|+.....++                 
T Consensus       734 dlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf  813 (1082)
T PLN02672        734 DPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGF  813 (1082)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCC
Confidence            45788999999887753    24555555 566654 45588999999999998876543322                 


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Cc-----c-----cC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RP-----L-----EL  142 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~-----~-----~~  142 (339)
                                                            ++|+++|++||++||+||+|+.-.+. ..     +     ..
T Consensus       814 ~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~  893 (1082)
T PLN02672        814 KLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRL  893 (1082)
T ss_pred             CCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHh
Confidence                                                  88999999999999999999732221 11     0     00


Q ss_pred             ------CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC-CChHHHHHHHhc--------hhhHHHHH
Q 019543          143 ------GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG-LAPFDCWICLRG--------VKTMALRV  207 (339)
Q Consensus       143 ------~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~-~~~~~a~~~~~~--------l~~~~~r~  207 (339)
                            ..-++++||||.++.+|. +.||++++++.+++.++......+.. .+...+..++..        .+.+.+.+
T Consensus       894 ~~~sks~nVIvL~SfSKkf~lpGL-RIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r  972 (1082)
T PLN02672        894 KSSNPSFAVALLGGLSTELLSGGH-EFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQK  972 (1082)
T ss_pred             ccccCCceEEEEeCcHHhhccHHH-HheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence                  023688899999998775 45688887656778777654322221 122222222211        12234455


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 019543          208 EKQQDNAQKIAEFLASH  224 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~  224 (339)
                      +...++.+++.+.|+.+
T Consensus       973 ~~Lk~rRd~L~e~L~~~  989 (1082)
T PLN02672        973 KILKSRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            56778888899999876

>PLN02368 alanine transaminase

Probab=99.47  E-value=1.2e-11  Score=119.21  Aligned_cols=172  Identities=12%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-Hhc-CCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLL-GTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll-~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++++-+.+.+..|    .+++++++++++|+..++ .++ +|||+|++++|.|......+.                 
T Consensus       111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~  190 (407)
T PLN02368        111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENW  190 (407)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCC
Confidence            344444444444335    245667777788987654 466 699999999998865432111                 


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc-------
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL-------  140 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~-------  140 (339)
                                                                ++|+++|++||++||+||+|+...+..  +.       
T Consensus       191 ~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~  270 (407)
T PLN02368        191 GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVL  270 (407)
T ss_pred             CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHH
Confidence                                                      889999999999999999997543311  11       


Q ss_pred             -c-------CCCeEEEecccccc-ccCCCceEEEEEE--cChhHHHHHHHHHHhcCCCCChHHHHHHHhchh--------
Q 019543          141 -E-------LGADIVMHSATKFI-AGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------  201 (339)
Q Consensus       141 -~-------~~~Di~~~S~sK~l-~g~~~~~gG~v~~--~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~--------  201 (339)
                       .       ..--|+++||||.+ +.+|.+ .||+++  .++++++.+..... ...+.+.+..+++...++        
T Consensus       271 ~~~~~~~~~~~~vI~~~SfSK~~~~~~GlR-iGy~i~~~~~~~li~~~~~~~~-~~~~~~~~~Q~aa~~~l~~~~~~~~~  348 (407)
T PLN02368        271 MDMGPPISKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPPKTVEEIYKVAS-IALSPNVSGQIFMGLMVNPPKPGDIS  348 (407)
T ss_pred             hhhcccccccceEEEEecCCcccccCCccc-eEEEEEeCCCHHHHHHHHHHhc-ccCCCCcHHHHHHHHHhCCCCCCCcc
Confidence             0       11238889999998 566655 567764  24567777776542 233344433333333222        


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          202 ------TMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       202 ------~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                            ......+..+++.+.+.+.|++++++.
T Consensus       349 ~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~  381 (407)
T PLN02368        349 YDQFVRESKGILESLRRRARMMTDGFNSCKNVV  381 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence                  112345666778888999999888764

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.43  E-value=3.1e-13  Score=124.00  Aligned_cols=174  Identities=25%  Similarity=0.274  Sum_probs=123.5

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCc------cchH-------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLY------GGTD-------------  107 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y------~~~~-------------  107 (339)
                      .|+  .++.+++||+++++++|.+.+++++||++||.+. ..+++|++.|++.+..+      ++..             
T Consensus        24 ~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~  101 (290)
T PF01212_consen   24 AYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGAKLIPLPSD  101 (290)
T ss_dssp             CTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBEC
T ss_pred             ccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCcEEEECCCc
Confidence            466  7899999999999999999999999999999864 45779999999976521      1110             


Q ss_pred             -----------HHHH-------------------------------HHHHHHHHHcCCEEEEeCCc---CC---CCCcCc
Q 019543          108 -----------RLLS-------------------------------RKIAEMAHAHGALLLVDNSI---MS---PVLSRP  139 (339)
Q Consensus       108 -----------~~~~-------------------------------~~I~~la~~~g~~livD~a~---a~---g~~~~~  139 (339)
                                 ..+.                               ++|.++||+||++|+.|.|-   +.   +.....
T Consensus       102 ~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e  181 (290)
T PF01212_consen  102 DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAE  181 (290)
T ss_dssp             TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHH
T ss_pred             ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHH
Confidence                       0110                               89999999999999999984   11   111122


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh--HHHH------HHHhchhhHHHHHHHHH
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP--FDCW------ICLRGVKTMALRVEKQQ  211 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~--~~a~------~~~~~l~~~~~r~~~~~  211 (339)
                      +..++|++..|++|.++.+   .|++|++++ +++++.+.+++..|..+..  +.++      .++..++....+..+.+
T Consensus       182 ~~~~~D~v~~~~tK~~g~~---~Gavl~~~~-~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~  257 (290)
T PF01212_consen  182 IAAGADSVSFGGTKNGGAP---GGAVLAGNK-EFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHAN  257 (290)
T ss_dssp             HHTTSSEEEEETTSTT-SS---SEEEEEESH-HHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHH
T ss_pred             HhhhCCEEEEEEEcccccc---cceEEEech-HHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHH
Confidence            3357899999999999854   367777765 6666666555555533321  2222      44555666667778888


Q ss_pred             HHHHHHHHHHhCCCCc
Q 019543          212 DNAQKIAEFLASHPRV  227 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i  227 (339)
                      ++++++++.|+..+.+
T Consensus       258 ~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  258 AMAKRLAAGLEALGGV  273 (290)
T ss_dssp             HHHHCHHHCHHEECEE
T ss_pred             HHHHHHHHHHHHCCCc
Confidence            9999999999987653

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.43  E-value=2.1e-11  Score=118.36  Aligned_cols=242  Identities=15%  Similarity=0.172  Sum_probs=148.8

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHh---c---CCCCEEEEcCCCccchH-----------------
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---L---GTGEEIVAGDDLYGGTD-----------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~l---l---~~GD~Vi~~~~~y~~~~-----------------  107 (339)
                      .++...+|.++|+++...  +.+.+++||++|+.+.+.+   .   .....|++....|+|..                 
T Consensus       115 ~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~  194 (442)
T TIGR03372       115 LDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM  194 (442)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC
Confidence            356667788888877643  4678889999999754332   2   12356776555444321                 


Q ss_pred             ------------------HHHH-------------------------------HHHHHHHHHcCCEEEEeCCc-CCCCCc
Q 019543          108 ------------------RLLS-------------------------------RKIAEMAHAHGALLLVDNSI-MSPVLS  137 (339)
Q Consensus       108 ------------------~~~~-------------------------------~~I~~la~~~g~~livD~a~-a~g~~~  137 (339)
                                        ..++                               ++|.++|++||+++|+||++ +.|-.+
T Consensus       195 p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG  274 (442)
T TIGR03372       195 PLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG  274 (442)
T ss_pred             CCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc
Confidence                              0110                               89999999999999999998 333222


Q ss_pred             Cc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhhHHHH--HH
Q 019543          138 RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALR--VE  208 (339)
Q Consensus       138 ~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~~~~r--~~  208 (339)
                      ..     .....||++  ++|.+++.--.+| .+++++ ++.+.+......++.+.  +|..++.++..|+.+++.  .+
T Consensus       275 ~~~a~e~~gv~PDivt--~gK~lg~G~~Pig-avv~~~-~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~  350 (442)
T TIGR03372       275 KMFACEHEGVQPDILC--LAKALGGGVMPIG-ATIATE-AVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA  350 (442)
T ss_pred             cchhhhhcCCCCCeee--ehhhhcCCcccce-EEEecH-HHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence            21     122458775  8999985211244 455553 56665532111233333  788888887777766422  34


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccce
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      +.++..+++.+.|+++..    .+|..-.         ..+|.|.++.+++.+......+.+.+...|+.++..      
T Consensus       351 ~~~~~G~~l~~~L~~l~~----~~~~~i~---------~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~------  411 (442)
T TIGR03372       351 QAAIKGDFLLDGFQQLAA----EYPDLII---------EARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGT------  411 (442)
T ss_pred             HHHHHHHHHHHHHHHHHH----hCCCceE---------EEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeec------
Confidence            444555666666654310    1221000         024678999999876555677888887777665411      


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       .+                  ..+.|||++.+..+++.++.+.++|++
T Consensus       412 -~~------------------~~~~lr~~Ppl~~t~~~id~~~~~l~~  440 (442)
T TIGR03372       412 -LN------------------NAKSIRIEPPLTITIEQCALVIKAAKD  440 (442)
T ss_pred             -CC------------------CCCEEEEECCcccCHHHHHHHHHHHHH
Confidence             01                  236799999999988888888888875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.43  E-value=2.3e-12  Score=107.99  Aligned_cols=110  Identities=34%  Similarity=0.406  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhHh--CCCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchH-HHHH---------------------
Q 019543           57 RDALESLLAKLD--KADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTD-RLLS---------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~--g~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~-~~~~---------------------  111 (339)
                      .+++++.+++++  +.+.++++++|+.|+.+++. +.++|++|+++++.|++.. ....                     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~   81 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDV   81 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchhh
Confidence            468999999999  88899999999999986554 6778999999988776654 2211                     


Q ss_pred             ------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cccCCCeEEEecccccccc
Q 019543          112 ------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~~~~~Di~~~S~sK~l~g  157 (339)
                                                    ++|.++|+++|+++++|++++.+....    ....++|+++.|++|++++
T Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~  161 (170)
T cd01494          82 AILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG  161 (170)
T ss_pred             hhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCC
Confidence                                          799999999999999999998765542    4446789999999999996


Q ss_pred             CCCceEEEEEEc
Q 019543          158 HSDVMAGVLAVK  169 (339)
Q Consensus       158 ~~~~~gG~v~~~  169 (339)
                      +   .+|+++++
T Consensus       162 ~---~~G~l~~~  170 (170)
T cd01494         162 E---GGGVVIVK  170 (170)
T ss_pred             C---ceEEEEeC
Confidence            3   46888753

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.42  E-value=1.1e-11  Score=121.02  Aligned_cols=237  Identities=20%  Similarity=0.215  Sum_probs=142.4

Q ss_pred             HHHHHHHHHhHhCCC--eEEEcCcHHHHHHHH-HHh-cCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           57 RDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~~--~~l~~~sG~~A~~~i-l~l-l~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      ..++++.+++++|.+  .++++++|++++.++ +++ +++||+|+++++.|+.....+.                     
T Consensus       114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d  193 (447)
T PRK00451        114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTD  193 (447)
T ss_pred             HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCC
Confidence            445557789999975  456777778887754 444 4799999999887754332111                     


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEE--eCCcCCCCCcCcccCCCeEEEecccc---c--c
Q 019543          112 -----------------------------RKIAEMAHAHGALLLV--DNSIMSPVLSRPLELGADIVMHSATK---F--I  155 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~liv--D~a~a~g~~~~~~~~~~Di~~~S~sK---~--l  155 (339)
                                                   ++|.++|+++|+++++  |.. +.|....+..+++|++++|..|   .  +
T Consensus       194 ~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~~  272 (447)
T PRK00451        194 LEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLSF  272 (447)
T ss_pred             HHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCCC
Confidence                                         9999999999999998  533 4554444456789999996544   3  4


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHH-------------------------HHHhc---CCCCC-h---HHHHHHHhch--h
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYF-------------------------LQNAE---GSGLA-P---FDCWICLRGV--K  201 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~-------------------------~~~~~---~~~~~-~---~~a~~~~~~l--~  201 (339)
                      +|+   .+|++++++ ++.+.+..                         .+...   ....+ +   ..++..+..+  +
T Consensus       273 ~Gp---g~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~  348 (447)
T PRK00451        273 GGP---YLGFFATRK-KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPE  348 (447)
T ss_pred             CCC---CchHHHhhH-HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHH
Confidence            443   367887764 55555310                         01110   11111 1   1122122212  2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          202 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      .+++..++..++++++.+.|+++++++.+  ++    +           ....+.+.++.  ...++.++|...++.+.+
T Consensus       349 g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~----~-----------~~~~~~v~~~~--~~~~~~~~L~~~gi~~~~  409 (447)
T PRK00451        349 GLRELAEQNHQKAHYLAERLAEIGGVELF--DG----P-----------FFNEFVVRLPK--PAEEVNEALLEKGILGGY  409 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCEEec--CC----C-----------eEEEEEEecCC--CHHHHHHHHHhcCCCCCc
Confidence            35666777788899999999988876432  11    0           11122233331  245788888776664321


Q ss_pred             CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          282 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       282 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      -.      .+    |.  +       + .++.+|+|++..++++.++.+.++|+++
T Consensus       410 ~~------~~----~~--~-------~-~~~~~rvs~~~~~t~e~i~~l~~~L~~~  445 (447)
T PRK00451        410 DL------GR----YY--P-------E-LGNHLLVCVTEKRTKEDIDALVAALGEV  445 (447)
T ss_pred             cc------cc----cc--C-------C-cCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            10      11    10  0       0 1358999999888888889999988753

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.41  E-value=2.3e-11  Score=116.33  Aligned_cols=238  Identities=13%  Similarity=0.071  Sum_probs=143.9

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcC-cHHHHHHHHH-HhcCC-CCEEEEcCCCccchHH--H-----H-H---------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFT-SGMAALAAVT-HLLGT-GEEIVAGDDLYGGTDR--L-----L-S---------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~-sG~~A~~~il-~ll~~-GD~Vi~~~~~y~~~~~--~-----~-~---------  111 (339)
                      ...++.++.++++++..   ++++++ ||+.++.+++ .++++ ++.|++. -.|+....  +     + +         
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~~-g~f~~~~~~~~~~~~g~~~v~~~~~~~g  126 (378)
T PRK03080         48 ALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLAW-ESFGSKWATDVVKQLKLEDPRVLEADYG  126 (378)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEEe-CHHHHHHHHHHHhhcCCCCceEeccCCC
Confidence            45678889999999962   466675 8899998644 57775 6666653 22222100  0     0 0         


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCce
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                                   ++|++  ++||+++++|.+++.|...-... .+|++++|.+|+|++|.+  
T Consensus       127 ~~~d~~~i~~~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-~iD~~~~s~~K~l~~P~G--  201 (378)
T PRK03080        127 SLPDLSAVDFDRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-KLDVYTFSWQKVLGGEGG--  201 (378)
T ss_pred             CCCCHhhcCCCCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-HCcEEEEehhhhCCCCCc--
Confidence                                         77877  78999999999999886532222 379999999999998643  


Q ss_pred             EEEEEEcChhHHHHHHHH-------------------H-Hh-cCC-CCChHHHH-HHHhchhh------HHHHHHHHHHH
Q 019543          163 AGVLAVKGERLAKELYFL-------------------Q-NA-EGS-GLAPFDCW-ICLRGVKT------MALRVEKQQDN  213 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~-------------------~-~~-~~~-~~~~~~a~-~~~~~l~~------~~~r~~~~~~~  213 (339)
                      .|+++.++ +..+++...                   . +. .++ ..++..+. .+..+|+.      ++.+.++.++.
T Consensus       202 ~g~l~v~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l  280 (378)
T PRK03080        202 HGMAILSP-RAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAAN  280 (378)
T ss_pred             eEEEEECH-HHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57888875 455554321                   0 00 111 12333222 11222222      34455666777


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HHHHHHHHccCCcceeecccCCcccceec
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      ++++.++|++.++++.+. +    .+.        ...+.+++|.+.+   ... .++...|...++.++.|+.      
T Consensus       281 ~~~l~~~l~~~~~~~~~~-~----~~~--------~~s~~i~~~~~~~~~~~~~-~~~~~~l~~~~i~v~~g~~------  340 (378)
T PRK03080        281 ASVLYDWAEKTPWATPLV-A----DPA--------TRSNTSVTLDFVDAQAAVD-AAAVAKLLRENGAVDIEPY------  340 (378)
T ss_pred             HHHHHHHHHhCCCccccc-C----Ccc--------ccCccEEEEEcCCchHHHH-HHHHHHHHHcCCeeccccc------
Confidence            888899998887543221 1    010        0123689998865   222 2344445444666665532      


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +                 ...+.+|+|++..++++.|+.+.++|++
T Consensus       341 ~-----------------~~~~~vRis~~~~~t~~di~~l~~al~~  369 (378)
T PRK03080        341 R-----------------DAPNGLRIWCGPTVEPADVEALTPWLDW  369 (378)
T ss_pred             c-----------------CCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence            1                 0136799999998888888888887764

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.41  E-value=8e-12  Score=119.00  Aligned_cols=173  Identities=21%  Similarity=0.226  Sum_probs=115.1

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccchHHHH---------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL---------------------  110 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~---------------------  110 (339)
                      .....+.|+.+|+++|++++.+..+| +.+|.+ ++++++|||.|+++++.+-.....+                     
T Consensus        65 ~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~  144 (417)
T PF01276_consen   65 EGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIG  144 (417)
T ss_dssp             BTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BE
T ss_pred             ccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCcc
Confidence            34678999999999999999999888 567774 6679999999999987543322111                     


Q ss_pred             ----------------H-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cccCCC
Q 019543          111 ----------------S-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PLELGA  144 (339)
Q Consensus       111 ----------------~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~~~~~  144 (339)
                                      +                         ++|+++|+++|++|+|||||+....+.     ....|+
T Consensus       145 ~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~ga  224 (417)
T PF01276_consen  145 GISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGA  224 (417)
T ss_dssp             EB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTS
T ss_pred             CCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccC
Confidence                            1                         999999999999999999998654322     245688


Q ss_pred             e-------EEEeccccccccCCCceEEEEEEcChh--HHHHHHHHHHhc-CCCCChH-HHH--HHHhch-hh-HHHHHHH
Q 019543          145 D-------IVMHSATKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAE-GSGLAPF-DCW--ICLRGV-KT-MALRVEK  209 (339)
Q Consensus       145 D-------i~~~S~sK~l~g~~~~~gG~v~~~~~~--l~~~l~~~~~~~-~~~~~~~-~a~--~~~~~l-~~-~~~r~~~  209 (339)
                      |       +++.|.+|.+++.  .++.++..++..  -.++++....++ ++..+-. .+.  .+.+.+ .. =....++
T Consensus       225 d~~~~~~~~vvqS~HKtL~al--tQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~  302 (417)
T PF01276_consen  225 DRPNDPGIIVVQSTHKTLPAL--TQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEE  302 (417)
T ss_dssp             S-CTSBEEEEEEEHHHHSSS---TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             ccccccceeeeechhhccccc--ccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            9       9999999999954  578899888753  246666655544 3443322 222  123333 11 1334566


Q ss_pred             HHHHHHHHHHHH---hCCCCce
Q 019543          210 QQDNAQKIAEFL---ASHPRVK  228 (339)
Q Consensus       210 ~~~~a~~l~~~L---~~~~~i~  228 (339)
                      ..++++.+++.+   ++.+.++
T Consensus       303 ~i~~a~~~R~~i~~~~~~~~~~  324 (417)
T PF01276_consen  303 AIELAEEFRKKINRLNDIWGFK  324 (417)
T ss_dssp             HHHHHHHHHHHHHHHCCT-SSE
T ss_pred             HHHHHHHHHHHHHhcCCCceEe
Confidence            667778888888   4555544

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.40  E-value=1.8e-11  Score=120.68  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             eEEEcCcHHHHHHH-HHH-----hcCCCCEEEEcCCCccchHHHHH----------------------------------
Q 019543           72 RALCFTSGMAALAA-VTH-----LLGTGEEIVAGDDLYGGTDRLLS----------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~-il~-----ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------  111 (339)
                      ++++++++++|+.. +.+     +++|||+|++++|.|........                                  
T Consensus       163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~t  242 (527)
T PRK09275        163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSI  242 (527)
T ss_pred             eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCC
Confidence            57777778999874 332     68999999999998876543221                                  


Q ss_pred             ---------------------HHHHHHHHH--cCCEEEEeCCcCCCCCc--CcccC--CCeEEEeccccccccCCCceEE
Q 019543          112 ---------------------RKIAEMAHA--HGALLLVDNSIMSPVLS--RPLEL--GADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 ---------------------~~I~~la~~--~g~~livD~a~a~g~~~--~~~~~--~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                           ++|+++|++  +|++||+||+|+.-...  .....  .--|++.||||+++.+|+++ |
T Consensus       243 kai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl-G  321 (527)
T PRK09275        243 KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL-G  321 (527)
T ss_pred             CEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH-h
Confidence                                 889999965  59999999999754321  11111  23589999999999888664 5


Q ss_pred             EEEEcCh
Q 019543          165 VLAVKGE  171 (339)
Q Consensus       165 ~v~~~~~  171 (339)
                      |++++++
T Consensus       322 ~i~~~~~  328 (527)
T PRK09275        322 VIALHED  328 (527)
T ss_pred             hhhcCch
Confidence            7777764

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.39  E-value=4.8e-11  Score=116.19  Aligned_cols=180  Identities=14%  Similarity=0.184  Sum_probs=103.7

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCC-CCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIMS-PVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~-g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||+|.. |-.+...     ....|+  .|++|.+++ | ...|++++++ ++.+.+.......+
T Consensus       231 ~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg~-G-~pigav~~~~-~i~~~~~~~~~~~T  305 (433)
T PRK08117        231 KKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIAS-G-LPLSAVVASK-ELMEQWPLGSHGTT  305 (433)
T ss_pred             HHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhccC-C-CcceeEEEcH-HHHhhccCCCCCCC
Confidence            8999999999999999999962 2212221     112354  689999984 3 4456777764 56655532221223


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC---
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---  260 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~---  260 (339)
                      ...+|+.+++++..|+.+.  ...++.+++.+++.+.|+.+..    .+|...          ..++.|.++.+++.   
T Consensus       306 ~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~~----------~vrg~Gl~~gi~~~~~~  371 (433)
T PRK08117        306 FGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKE----KHPVIG----------DVRGIGLMIGIEIVDPD  371 (433)
T ss_pred             CCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh----cCCcee----------eeecCCcEEEEEEecCC
Confidence            4557887777777776552  2344455556666666654311    122100          02456677788762   


Q ss_pred             ---CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          261 ---SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       261 ---~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                         +......+.+.+.+.|+.+..          .               |-..+.+|+++.+.++++.|+.+.++|+
T Consensus       372 ~~~~~~~~~~~~~~l~~~Gv~~~~----------~---------------g~~~~~lRl~p~~~~t~~~i~~~~~~l~  424 (433)
T PRK08117        372 GEPDGDAVEKILDKCLEKGLLFYL----------C---------------GNAGNVLRMIPPLTVTKEEIDEGLDILD  424 (433)
T ss_pred             CCcchHHHHHHHHHHHHCCCEEee----------c---------------CCCCCEEEEeCCccCCHHHHHHHHHHHH
Confidence               223355667666666654321          0               0123689999776666655555555543

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.39  E-value=7.7e-12  Score=116.70  Aligned_cols=240  Identities=19%  Similarity=0.294  Sum_probs=152.8

Q ss_pred             CCCchHHHHHHHHHhHhC-CCeEEEcCcHHHHHHHHHH---hcC--C-CCEEEEcCCCccchH-----------------
Q 019543           52 SGNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTH---LLG--T-GEEIVAGDDLYGGTD-----------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g-~~~~l~~~sG~~A~~~il~---ll~--~-GD~Vi~~~~~y~~~~-----------------  107 (339)
                      +.++...+|.++|+++.+ .+.+.++|||++|+.+.+-   ...  | .-+||...+.|+|-.                 
T Consensus        81 ~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~  160 (404)
T COG4992          81 FYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG  160 (404)
T ss_pred             cCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence            467888999999999996 8899999999999975442   222  2 236777776665421                 


Q ss_pred             --------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc---
Q 019543          108 --------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL---  140 (339)
Q Consensus       108 --------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~---  140 (339)
                                    ..++                             +++.+||++||+++|.||++. .|--++..   
T Consensus       161 Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e  240 (404)
T COG4992         161 PLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYE  240 (404)
T ss_pred             CCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHH
Confidence                          0000                             999999999999999999982 33222221   


Q ss_pred             --cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHHH
Q 019543          141 --ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQK  216 (339)
Q Consensus       141 --~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~  216 (339)
                        ....||++  +.|.+||.  .-.|+++++ +...+.+..-....+.+=+|+.++.+...|+.+  +...++.++...+
T Consensus       241 ~~gV~PDI~t--laK~LgGG--~PigA~la~-~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~  315 (404)
T COG4992         241 HYGVEPDILT--LAKALGGG--FPIGAMLAT-EEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEY  315 (404)
T ss_pred             HhCCCCCEEE--eeccccCC--ccceeeEEc-hhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence              22347765  68999974  334455554 333333221111223445788888887777765  3345555566666


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.+.|+++..    .||.+.          ..+|.|-++-+++.....+..+++.+++.|+.+...              
T Consensus       316 ~~~~L~~l~~----~~~~v~----------~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a--------------  367 (404)
T COG4992         316 LLQRLRELKR----RYPLVK----------EVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPA--------------  367 (404)
T ss_pred             HHHHHHHHhh----cCCcee----------eeecceeEEEEEecCcccHHHHHHHHHHCCeEEecC--------------
Confidence            7777765421    133111          136788999999866545677888888877654321              


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHhcC
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRTG  337 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~~~  337 (339)
                                   .++.|||..-+    |+.++.++.|.++|++.
T Consensus       368 -------------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         368 -------------GPNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             -------------CCCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence                         23578887765    56666677777776643

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.38  E-value=3.1e-11  Score=116.03  Aligned_cols=176  Identities=17%  Similarity=0.177  Sum_probs=105.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-  184 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-  184 (339)
                      ++|.++|++||+++|+||+|. .|-.+..     .....|++  +++|.+++.  ...|.+++++ ++......  ... 
T Consensus       203 ~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~--t~gK~lg~G--~p~~av~~~~-~i~~~~~~--~~~~  275 (395)
T PRK03715        203 QQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIM--TLGKGIGGG--VPLAALLAKA-EVAVFEAG--DQGG  275 (395)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCcee--eehhhhhCC--cceEEEEEcc-ccccccCC--CcCC
Confidence            899999999999999999985 2222221     12345864  578999963  3355666665 44321111  112 


Q ss_pred             CCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH
Q 019543          185 GSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  262 (339)
Q Consensus       185 ~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~  262 (339)
                      +..-+|..+++++..|+.+.  ..+++.+++.+++.+.|+++..    .++ +..          .+|.|.++++++.+.
T Consensus       276 T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~-i~~----------vrG~Glm~~i~l~~~  340 (395)
T PRK03715        276 TYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSE----ERG-LEG----------ERGEGLLRALLLGKD  340 (395)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh----cCC-cCe----------EEcceeEEEEEecCc
Confidence            23456887777777777663  3466666777777777765311    011 110          245789999998653


Q ss_pred             --HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          263 --ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       263 --~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        ..+.+.+..+...|+.+.         .+                  ....|||++.+..+++.|+.+.++|++
T Consensus       341 ~~~~~~~~~~~~~~~Gi~~~---------~~------------------~~~~lR~~p~l~~t~~ei~~~~~~l~~  389 (395)
T PRK03715        341 IGPQIVEKARDMQPDGLLLN---------AP------------------RPNLLRFMPALNVTTEEIDQMIAMLRS  389 (395)
T ss_pred             hHHHHHHHHHhccCCCEEEe---------ec------------------CCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence              233344444444355432         11                  225799999987777777766666653

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.38  E-value=5.3e-11  Score=116.30  Aligned_cols=241  Identities=17%  Similarity=0.214  Sum_probs=144.6

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHh---cC--CC-CEEEEcCCCccchH-----------------
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHL---LG--TG-EEIVAGDDLYGGTD-----------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~l---l~--~G-D~Vi~~~~~y~~~~-----------------  107 (339)
                      .++...+|.++|+++...  +.+.+++||+.|+.+.+.+   ..  .| ..|++....|+|..                 
T Consensus       122 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~  201 (459)
T PRK11522        122 LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM  201 (459)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence            356677788888887643  4788899999999754332   21  12 35666555554421                 


Q ss_pred             ------------------HHHH-------------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCc
Q 019543          108 ------------------RLLS-------------------------------RKIAEMAHAHGALLLVDNSIM-SPVLS  137 (339)
Q Consensus       108 ------------------~~~~-------------------------------~~I~~la~~~g~~livD~a~a-~g~~~  137 (339)
                                        ..+.                               +++.++|++||+++|+||+|. .|-.+
T Consensus       202 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG  281 (459)
T PRK11522        202 PLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG  281 (459)
T ss_pred             CCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc
Confidence                              0110                               899999999999999999993 32222


Q ss_pred             Cc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhhHH--HHHH
Q 019543          138 RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMA--LRVE  208 (339)
Q Consensus       138 ~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~~~--~r~~  208 (339)
                      ..     .....|++  +++|.+++.--.+|+++ +++ ++.+.+......++.+.  +|..++.++..|+.+.  ...+
T Consensus       282 ~~~a~e~~gv~PDiv--t~gK~lggG~~Pigav~-~~~-~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~  357 (459)
T PRK11522        282 KMFACEHENVQPDIL--CLAKALGGGVMPIGATI-ATE-EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA  357 (459)
T ss_pred             hhhhhhccCCCCCEE--EechhhhCCCccceeEE-EcH-HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence            21     12235876  67999995211245555 443 55554421111233333  7888877777777653  3455


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccce
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      +.+++.+++.+.|+++..    .+|..-.         ..+|.|.++.+++.+.+.+..+.+.|.+.|+.+....     
T Consensus       358 ~~~~~g~~l~~~L~~l~~----~~~~~i~---------~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~-----  419 (459)
T PRK11522        358 QAEQKGDYLLDGFRQLAR----EYPDLVQ---------EARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL-----  419 (459)
T ss_pred             HHHHHHHHHHHHHHHHHH----hCCCcee---------eEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC-----
Confidence            666667777777765310    1221000         0245788999998765556778888877777654110     


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                          ...+.+|+++.+..+++.|+.+.++|+
T Consensus       420 --------------------~~~~~lr~~Ppl~~t~~~id~~l~~l~  446 (459)
T PRK11522        420 --------------------NNAKTIRIEPPLTLTIEQCEQVLKAAR  446 (459)
T ss_pred             --------------------CCCCEEEEECCccCCHHHHHHHHHHHH
Confidence                                123679999887666655555555543

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.38  E-value=4.6e-11  Score=114.15  Aligned_cols=230  Identities=18%  Similarity=0.194  Sum_probs=139.0

Q ss_pred             chHHHHHHHHHhHh-CCC--eEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH---------------------
Q 019543           55 PTRDALESLLAKLD-KAD--RALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~-g~~--~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      ..+..+++++++.+ +..  .+++++||++|+.+.+.+   ...+++|++.+..|+|..                     
T Consensus        66 ~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~  145 (375)
T PRK04260         66 LYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVP  145 (375)
T ss_pred             ccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCC
Confidence            34556777788754 322  357889999999754432   355678888776666421                     


Q ss_pred             ----------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-----cC
Q 019543          108 ----------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-----EL  142 (339)
Q Consensus       108 ----------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~-----~~  142 (339)
                                ..++                             ++|.++|+++|+++|+||+|. .|..+.+.     ..
T Consensus       146 ~~~~~~~~dl~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~  225 (375)
T PRK04260        146 HFSYAIFNDLNSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI  225 (375)
T ss_pred             CeEEeCCCCHHHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC
Confidence                      0000                             899999999999999999984 22222221     12


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~  220 (339)
                      ..|++  ||||++++ | ...|++++++ ++.+.+...........+|..++.+...|+.+  +..+++.+++.+++++.
T Consensus       226 ~pdi~--t~sK~l~~-G-~~ig~~~~~~-~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~  300 (375)
T PRK04260        226 EPDIF--TLAKGLAN-G-VPVGAMLAKS-SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQ  300 (375)
T ss_pred             CCCEE--EecccccC-C-cceEEEEEcH-HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34644  89999984 3 4567777764 56555532211223444677766666666554  23445555555565555


Q ss_pred             HhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          221 LAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       221 L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.+    ++.+..                  .++.|.++++.+..  ...+|.+.+...|+.+.          |.    
T Consensus       301 l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~--~~~~~~~~l~~~Gi~v~----------~~----  346 (375)
T PRK04260        301 LQKALQDKETVTT------------------VRGLGYMIGIETTA--DLSQLVEAARDKGLIVL----------TA----  346 (375)
T ss_pred             HHHHHhhCCCeeE------------------EeccceEEEEEecC--cHHHHHHHHHhCCCEEe----------cC----
Confidence            543    222111                  12357788888732  24567777776666542          10    


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                   ..+.+|+++.+..+++.++.+.+.+++
T Consensus       347 -------------~~~~lR~~~~~~~t~~~i~~~l~~l~~  373 (375)
T PRK04260        347 -------------GTNVIRLLPPLTLTKEEIEQGIAILSE  373 (375)
T ss_pred             -------------CCCEEEEcCCCccCHHHHHHHHHHHHH
Confidence                         236799999887777777777776654

>PLN00144 acetylornithine transaminase

Probab=99.38  E-value=3.4e-11  Score=115.29  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=138.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh----cC------C------CCEEEEcCCCccchH---------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL----LG------T------GEEIVAGDDLYGGTD---------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l----l~------~------GD~Vi~~~~~y~~~~---------  107 (339)
                      .++...+|.++|++..+.+.+.+++||++|+...+.+    .+      +      ..+|+.-...|+|..         
T Consensus        55 ~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~  134 (382)
T PLN00144         55 HTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSK  134 (382)
T ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCC
Confidence            3666778888888877777899999999999743322    11      1      245766555554421         


Q ss_pred             ----------------------H----HHH--------------------------HHHHHHHHHcCCEEEEeCCcC-CC
Q 019543          108 ----------------------R----LLS--------------------------RKIAEMAHAHGALLLVDNSIM-SP  134 (339)
Q Consensus       108 ----------------------~----~~~--------------------------~~I~~la~~~g~~livD~a~a-~g  134 (339)
                                            .    .+.                          ++|.++|++||+++|+||++. .|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~g  214 (382)
T PLN00144        135 EQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLG  214 (382)
T ss_pred             ccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence                                  0    000                          899999999999999999984 22


Q ss_pred             CCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHH
Q 019543          135 VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRV  207 (339)
Q Consensus       135 ~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~  207 (339)
                      ..+..     .....|  +.|++|.+++ | ...|++++++ ++.+.+.......+...+|+.++++...|+.+.  ...
T Consensus       215 r~g~~~~~~~~~~~PD--i~t~sK~l~~-G-~pig~v~~~~-~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~  289 (382)
T PLN00144        215 RTGYLWAHEAYGVEPD--IMTLAKPLAG-G-LPIGAVLVTE-KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFL  289 (382)
T ss_pred             ccchHhhhhhcCCCCC--EEEecccccC-C-cceEEEEEcH-HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHH
Confidence            22222     122346  6778999985 3 5677888764 676666432223455667887777765554442  122


Q ss_pred             HHHHHHHHHHHHH----HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          208 EKQQDNAQKIAEF----LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       208 ~~~~~~a~~l~~~----L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      ++.++..+++.+.    ++++|.+..                  .++.|.++++++..  .+.+|.+.+...|+.+..++
T Consensus       290 ~~~~~~g~~l~~~l~~~~~~~~~~~~------------------vrg~G~~~~l~l~~--~~~~~~~~~~~~Gv~i~~~~  349 (382)
T PLN00144        290 ASVAKKGEYLRELLRRKLGGNPHVKE------------------VRGVGLLVGIQLDV--PAGPLVDACRDSGLLVLTAG  349 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcee------------------eecCceEEEEEecC--ccHHHHHHHHHCCeEEeecC
Confidence            2333333344343    333332221                  13467899998832  23567777777676553220


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH----HHHHHHHHHhc
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND----LISDLDKALRT  336 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~----li~~l~~al~~  336 (339)
                                                ..+.||+++.+..+++    .++.|.++|++
T Consensus       350 --------------------------~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        350 --------------------------KGDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             --------------------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence                                      1267999998833344    44455555543

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.37  E-value=7.3e-11  Score=114.62  Aligned_cols=177  Identities=15%  Similarity=0.199  Sum_probs=103.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCC-CCCcCcc---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC
Q 019543          112 RKIAEMAHAHGALLLVDNSIMS-PVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  187 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~-g~~~~~~---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~  187 (339)
                      ++|.++|++||+++|+||++.. +..+...   ..+.+.-+.||||.+++ | ...|++++++ ++++.+.......+..
T Consensus       223 ~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G-~rig~v~~~~-~~~~~~~~~~~~~t~~  299 (425)
T PRK08088        223 QRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-G-FPLAGVTGRA-EVMDAIAPGGLGGTYA  299 (425)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccC-C-CcceeeEecH-HHHhhcCCCCCCCCCC
Confidence            8999999999999999999862 2222211   12333446899999984 4 5567888764 6777665433334456


Q ss_pred             CChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-
Q 019543          188 LAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-  260 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-  260 (339)
                      .+|+..+++...|+..  +..+++.++..+++.+.|+    .+|.+..+                  ++.|.++++.+. 
T Consensus       300 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v------------------~g~G~~~~l~l~~  361 (425)
T PRK08088        300 GNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFE  361 (425)
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------eccceEEEEEEec
Confidence            6777776666666543  2223333333444444443    33332222                  235788999872 


Q ss_pred             -------CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHH
Q 019543          261 -------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  333 (339)
Q Consensus       261 -------~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~a  333 (339)
                             +...+.++.+.+.+.|+.+..++                         ...+.||+++.+..+++.|+...+.
T Consensus       362 ~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~-------------------------~~~~~iRl~~~~~~t~~ei~~~i~~  416 (425)
T PRK08088        362 DGDHSKPNAKLTAQIVARARDKGLILLSCG-------------------------PYYNVLRILVPLTIEDAQIRQGLEI  416 (425)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCEEecCC-------------------------CCCCEEEEECCCCcCHHHHHHHHHH
Confidence                   23346677777766665432110                         0136799999875544444443333


Q ss_pred             H
Q 019543          334 L  334 (339)
Q Consensus       334 l  334 (339)
                      |
T Consensus       417 l  417 (425)
T PRK08088        417 I  417 (425)
T ss_pred             H
Confidence            3

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.37  E-value=5.1e-11  Score=117.27  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=70.3

Q ss_pred             eEEEcCcHHHHHHHH-HH-----hcCCCCEEEEcCCCccchHHH-------------------------H-------H--
Q 019543           72 RALCFTSGMAALAAV-TH-----LLGTGEEIVAGDDLYGGTDRL-------------------------L-------S--  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~i-l~-----ll~~GD~Vi~~~~~y~~~~~~-------------------------~-------~--  111 (339)
                      ++++++++++|+..+ .+     ++.|||+|++++|.|+.....                         +       .  
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~  236 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKL  236 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHh
Confidence            577777889998743 33     689999999999987543211                         1       0  


Q ss_pred             --------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc--CcccC--CCeEEEeccccccccCC
Q 019543          112 --------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS--RPLEL--GADIVMHSATKFIAGHS  159 (339)
Q Consensus       112 --------------------------~~I~~la~~~--g~~livD~a~a~g~~~--~~~~~--~~Di~~~S~sK~l~g~~  159 (339)
                                                ++|+++|++|  |++||+||+|+.....  .....  .--|+++||||+++.+|
T Consensus       237 ~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G  316 (521)
T TIGR03801       237 RDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATG  316 (521)
T ss_pred             cCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCch
Confidence                                      8889999987  9999999999753321  11111  12489999999999888


Q ss_pred             CceEEEEEEcCh
Q 019543          160 DVMAGVLAVKGE  171 (339)
Q Consensus       160 ~~~gG~v~~~~~  171 (339)
                      +++ |+++++++
T Consensus       317 ~Rl-G~i~~~~~  327 (521)
T TIGR03801       317 WRL-GTIALHKD  327 (521)
T ss_pred             hhh-hhhhcCch
Confidence            765 67777653

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.37  E-value=7.7e-12  Score=117.33  Aligned_cols=119  Identities=24%  Similarity=0.228  Sum_probs=92.4

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCC--eEEEcCcH-HHHHHHHHH--hcCCCC----EEEEcCCCccchHHHHH-------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKAD--RALCFTSG-MAALAAVTH--LLGTGE----EIVAGDDLYGGTDRLLS-------  111 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG-~~A~~~il~--ll~~GD----~Vi~~~~~y~~~~~~~~-------  111 (339)
                      .|++...+..++.++.+|++.+++  + ++|++| |.++.+++.  ...++|    +||+.+..|+.....++       
T Consensus        78 ~y~w~~~~~~E~aR~~VAklInAd~~d-IiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~  156 (428)
T KOG1549|consen   78 SYGWKAEDAVEAAREQVAKLINADPSD-IVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGL  156 (428)
T ss_pred             ccchhhhHHHHHHHHHHHHHhCCCCCc-EEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCe
Confidence            355555566899999999999985  5 555555 899886554  355788    99988776654432111       


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeE
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADI  146 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di  146 (339)
                                                                  ++|.++|++.|+.+++|.||+.|.. .+.-+.++|+
T Consensus       157 ~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~  236 (428)
T KOG1549|consen  157 EVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADF  236 (428)
T ss_pred             EEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchh
Confidence                                                        9999999999999999999999965 4666789999


Q ss_pred             EEeccccccccCCCceEEEEEEcC
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~  170 (339)
                      ++.|.+|++|.++   .|++.+++
T Consensus       237 ~s~s~HK~ygp~~---iGaLYvr~  257 (428)
T KOG1549|consen  237 LSISAHKIYGPPG---IGALYVRR  257 (428)
T ss_pred             eeeecccccCCCc---ceEEEEcc
Confidence            9999999999775   47888875

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.36  E-value=5.3e-11  Score=115.55  Aligned_cols=178  Identities=11%  Similarity=0.125  Sum_probs=110.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH---HH
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL---QN  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~---~~  182 (339)
                      ++|.++|++||+++|+||+|. .|..+..     .....|++  +++|+++|.. ...|+++++ +++.+.+...   ..
T Consensus       224 ~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~gG~-~p~~av~~~-~~i~~~~~~~~~~~~  299 (423)
T PRK05964        224 AELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIM--CLSKGLTGGY-LPLAATLCT-AEIFEAFYSDDRAKA  299 (423)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCee--eeehhhhcCc-ccceEEEEc-HHHHHhhhcCCcccc
Confidence            899999999999999999983 3322221     12245765  5689998532 234556665 4677666421   11


Q ss_pred             -hcC--CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          183 -AEG--SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       183 -~~~--~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                       ..+  ...+|+.++.+...++.+.  ...++..++.+++.+.|+++..     +|.+..          .++.|.++.|
T Consensus       300 ~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i~~----------vrg~Gl~~~i  364 (423)
T PRK05964        300 FMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD-----LPGVAD----------VRVLGAIGAV  364 (423)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-----CCCeEE----------eecccEEEEE
Confidence             122  2457777777766666542  3456666777788887775422     222110          1356788899


Q ss_pred             eeCCHH---HHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          258 LTGSLA---LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       258 ~~~~~~---~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      .+.+..   ...++.+.|...|+.++          |                  ..+.|||+..+.++++.|+.+.++|
T Consensus       365 ~l~~~~~~~~~~~l~~~l~~~Gv~v~----------~------------------~~~~lR~~p~l~~t~edId~~v~~l  416 (423)
T PRK05964        365 ELDRPVLERDGPALRAFALERGVLLR----------P------------------LGNTIYLMPPYIITAEELDRITDAI  416 (423)
T ss_pred             EeccCcchhHHHHHHHHHHHCCeEEE----------e------------------cCCEEEEeCCcccCHHHHHHHHHHH
Confidence            885432   35677777776666543          1                  1146999988877777777666666


Q ss_pred             hc
Q 019543          335 RT  336 (339)
Q Consensus       335 ~~  336 (339)
                      ++
T Consensus       417 ~~  418 (423)
T PRK05964        417 VE  418 (423)
T ss_pred             HH
Confidence            53

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.1e-11  Score=110.15  Aligned_cols=212  Identities=22%  Similarity=0.276  Sum_probs=134.8

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHH-HHHhcCCCCEEEEcC-CCccchHHHHH--------
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAA-VTHLLGTGEEIVAGD-DLYGGTDRLLS--------  111 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~-il~ll~~GD~Vi~~~-~~y~~~~~~~~--------  111 (339)
                      .+|.|+..   -++.||+-+|+.+|+|.+++   +-||++|+.. +..+++|||+.+.-. .-|+....++.        
T Consensus        58 tGYGydD~---GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gS  134 (416)
T COG4100          58 TGYGYDDL---GRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGS  134 (416)
T ss_pred             CCCCcccc---chhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCccc
Confidence            45666644   56789999999999999887   7799999985 556999999987632 23432221110        


Q ss_pred             ------------------------------------------------------HHHHHHHHHc--CCEEEEeCCcCCCC
Q 019543          112 ------------------------------------------------------RKIAEMAHAH--GALLLVDNSIMSPV  135 (339)
Q Consensus       112 ------------------------------------------------------~~I~~la~~~--g~~livD~a~a~g~  135 (339)
                                                                            ++++++.|+.  |++++||++++..+
T Consensus       135 L~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv  214 (416)
T COG4100         135 LKDFGIKYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFV  214 (416)
T ss_pred             HHHhCcceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhh
Confidence                                                                  6667777765  78999999998776


Q ss_pred             C-cCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC----CCChHHHHHHHhchhhHHHHHHHH
Q 019543          136 L-SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS----GLAPFDCWICLRGVKTMALRVEKQ  210 (339)
Q Consensus       136 ~-~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~----~~~~~~a~~~~~~l~~~~~r~~~~  210 (339)
                      . ..|...|+|+..+|+-|..||.-...||+++++. ++++.........|.    +.+-.....+.+++=-.+.-..+.
T Consensus       215 E~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~-~~ve~~~yRlTaPGIG~e~Gat~~~l~~myqGlFlAPhvv~qa  293 (416)
T COG4100         215 EEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKA-ELVEAAAYRLTAPGIGREGGATLYSLREMYQGLFLAPHVVSQA  293 (416)
T ss_pred             hccCccccchhhhccceeeCCCCceeeccceeechH-HHHHhhceeeecCCccccccccHHHHHHHHhhhccchHHHHHH
Confidence            4 4577789999999999999987666799998874 676654321100110    000001111222222223334444


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  274 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~  274 (339)
                      .+-+...+..|..+.      +|   .+|-+.-     .-.--|.++.+++.++..+|+++++.
T Consensus       294 ~Kga~fta~~le~lg------~~---~~P~~~~-----kRtDlIQavkf~~~eKmIaFcqaiQ~  343 (416)
T COG4100         294 VKGAHFTARFLEKLG------FP---VNPKYDA-----KRTDLIQAVKFGSKEKMIAFCQAIQA  343 (416)
T ss_pred             hhhhHHHHHHHHHcC------CC---CCCcccc-----cccchhhheecCCHHHHHHHHHHHhh
Confidence            455556666666542      22   2221110     11235788889999999999998765

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.35  E-value=6.3e-11  Score=112.00  Aligned_cols=238  Identities=15%  Similarity=0.056  Sum_probs=144.5

Q ss_pred             chHHHHHHHHHhHhCC-C--eEEEcCc-HHHHHHH-HHHhcCCCCEEEEcCCCccchHH---------------------
Q 019543           55 PTRDALESLLAKLDKA-D--RALCFTS-GMAALAA-VTHLLGTGEEIVAGDDLYGGTDR---------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-~--~~l~~~s-G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~---------------------  108 (339)
                      ...+++++.++++++. +  .++++++ |+.|+.+ +..++++||.+++-.....+.+.                     
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~  116 (349)
T TIGR01364        37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGVVNVVASGKEGNY  116 (349)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCcEEEeccccCCC
Confidence            4678889999999995 2  4666654 8999985 55688899987775432221110                     


Q ss_pred             -----H--HH------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCce
Q 019543          109 -----L--LS------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       109 -----~--~~------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                           +  +.                  -..-++++.++++++||.+++.|... +...  .|++++|.+|++|.+|   
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDavss~g~~~id~~~--~d~~~~ssqK~lgP~G---  191 (349)
T TIGR01364       117 TKIPDPSTWEISEDAAYVHYCANETIHGVEFRELPDVKNAPLVADMSSNILSRPIDVSK--FGLIYAGAQKNIGPAG---  191 (349)
T ss_pred             CCCCCHHhcCCCCCCCEEEEcCCCCcccEecceecccCCCeEEEEccccccCccCCHHH--ccEEEEecccccCCCc---
Confidence                 0  00                  11236788899999999999887642 2222  4699999999997443   


Q ss_pred             EEEEEEcChhHHHHHHH-------HHH----hcCCCCChHHHHH-HHhchh------hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          163 AGVLAVKGERLAKELYF-------LQN----AEGSGLAPFDCWI-CLRGVK------TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~-------~~~----~~~~~~~~~~a~~-~~~~l~------~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .|+++.++ +..+++..       +..    ......++..... +..+|+      .++.+.++.+++++++.++|++.
T Consensus       192 lg~l~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~  270 (349)
T TIGR01364       192 LTVVIVRK-DLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS  270 (349)
T ss_pred             eEEEEECH-HHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            46777775 45554421       110    1112233333222 222222      25666777778899999999998


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                      +++.   .+..  .+..       + ...+++|.+++.....++.+.+...|+.+..|..                    
T Consensus       271 ~gl~---~~~~--~~~~-------r-s~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~--------------------  317 (349)
T TIGR01364       271 NGFY---RNPV--DPRN-------R-SRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHR--------------------  317 (349)
T ss_pred             CCee---ccCC--CHHH-------c-CCeEEEEecCChhHhHHHHHHHHHCCCcccCCcc--------------------
Confidence            7632   1111  1100       1 2367899876542124454555455553222210                    


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                           ..+.+|+|++..++++.|+.|.++|++
T Consensus       318 -----~~g~vRvS~~~~nt~edid~l~~al~~  344 (349)
T TIGR01364       318 -----SVGGMRASIYNAMPLEGVQALVDFMKE  344 (349)
T ss_pred             -----ccCeeEEECcCCCCHHHHHHHHHHHHH
Confidence                 125799999999988889999998875

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.35  E-value=9.4e-11  Score=113.09  Aligned_cols=209  Identities=14%  Similarity=0.193  Sum_probs=126.0

Q ss_pred             CchHHHHHHHHHhHhC-CCeEEEcCcHHHHHHHHHHh---c----C--C-CCEEEEcCCCccchHH--------------
Q 019543           54 NPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTHL---L----G--T-GEEIVAGDDLYGGTDR--------------  108 (339)
Q Consensus        54 ~~~~~~le~~la~~~g-~~~~l~~~sG~~A~~~il~l---l----~--~-GD~Vi~~~~~y~~~~~--------------  108 (339)
                      ++...+|.++|.++.+ .+.+.+++||++|+...+.+   .    +  + ...|+.-...|+|...              
T Consensus        81 ~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~  160 (408)
T PRK04612         81 SAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEG  160 (408)
T ss_pred             CHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccC
Confidence            4445566777776653 36788999999999743322   1    1  1 2467776555554310              


Q ss_pred             ---------------------HHH--------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc
Q 019543          109 ---------------------LLS--------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL  140 (339)
Q Consensus       109 ---------------------~~~--------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~  140 (339)
                                           .+.                          ++|.++|++||+++|+||+|. .|..+...
T Consensus       161 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~  240 (408)
T PRK04612        161 YEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF  240 (408)
T ss_pred             CCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh
Confidence                                 000                          899999999999999999985 32222211


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQ  215 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~  215 (339)
                         ..+....+.|++|.+++ |.. .|++++++ ++.+.+.......+.+.+|..++++...|+.+.  ...++.++..+
T Consensus       241 a~~~~~~~pdi~t~~K~l~~-G~p-iga~~~~~-~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~  317 (408)
T PRK04612        241 AHWQEQVTPDIVTLAKALGG-GFP-IGAMLAGP-KVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSA  317 (408)
T ss_pred             hhhhcCCCCCEEEEcchhcC-CCc-eEEEEECH-HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence               12345566788999984 434 45666654 566655432222344567887777777776653  34555566667


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeec
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITV  279 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v  279 (339)
                      ++.+.|+++..    .++...          ..+|.|.++.+++..  ...+..+++.+.+.|+.+
T Consensus       318 ~l~~~l~~l~~----~~~~i~----------~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv  369 (408)
T PRK04612        318 ALRAGLEALNA----EFGVFA----------QVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLL  369 (408)
T ss_pred             HHHHHHHHHHh----hCCCee----------eeeccceEEEEEecCchhhHHHHHHHHHHHCCeEE
Confidence            77777765321    011100          024678899998742  344567777777766654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.34  E-value=4.4e-11  Score=124.85  Aligned_cols=243  Identities=18%  Similarity=0.159  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHhHhCCCeEEEcCcHH----HHHHH-HHHhcCC-CC----EEEEcCCCccchHHHHH--------------
Q 019543           56 TRDALESLLAKLDKADRALCFTSGM----AALAA-VTHLLGT-GE----EIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~~l~~~sG~----~A~~~-il~ll~~-GD----~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ...++++.+++++|.+.+.+.++.+    .|+.. +..+.++ ||    +|+++...++.+...+.              
T Consensus       569 ~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~  648 (993)
T PLN02414        569 MFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAK  648 (993)
T ss_pred             HHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCC
Confidence            4679999999999998777777666    45554 4456666 88    89988765443321111              


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCC--CcCcccCCCeEEEeccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~--~~~~~~~~~Di~~~S~s  152 (339)
                                                           ++|+++||++|+.+++|.++..+.  ..++...|+||+++|.+
T Consensus       649 G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~H  728 (993)
T PLN02414        649 GNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLH  728 (993)
T ss_pred             CCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCC
Confidence                                                 899999999999999999996654  23556789999999999


Q ss_pred             cccccC---CCceEEEEEEcChhHHHHHHHH---------HH----hcCCCC-ChHH---------HHHHHhchhhHHHH
Q 019543          153 KFIAGH---SDVMAGVLAVKGERLAKELYFL---------QN----AEGSGL-APFD---------CWICLRGVKTMALR  206 (339)
Q Consensus       153 K~l~g~---~~~~gG~v~~~~~~l~~~l~~~---------~~----~~~~~~-~~~~---------a~~~~~~l~~~~~r  206 (339)
                      |+|++|   |+...|++++++ .+...+-..         ++    ..|+.- +++.         +++...+-+.+.+-
T Consensus       729 K~f~~P~G~GGPg~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~  807 (993)
T PLN02414        729 KTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDA  807 (993)
T ss_pred             ccCCcCcccCCCCeeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHH
Confidence            988855   233467887764 454433211         00    112211 1221         11112222334444


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe-eCC--HHHHHHHHccCCcceeecccCC
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGS--LALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~-~~~--~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      .++...|+.++++.|+...++   .|++-+..-.|          -.++.+. +++  ...+..+.++|..+|+....  
T Consensus       808 a~~a~~nAnYl~~rL~~~~~~---~~~~~~~~~~h----------Efv~~~~~l~~~~g~~~~di~krL~d~Gihapt--  872 (993)
T PLN02414        808 SKIAILNANYMAKRLEGHYPV---LFRGKNGTCAH----------EFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT--  872 (993)
T ss_pred             HHHHHHHHHHHHHHHHhhCCc---cccCCCCCeee----------eEEEeccccccccCCCHHHHHHHHHHcCcEEee--
Confidence            455667889999999775433   23221100011          1233332 211  02235677777666653221  


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                          +.+|                  .++.+||+++..+.++.+|.|.+++++
T Consensus       873 ----~~~p------------------v~~~lmiepTE~~skeelDrf~~al~~  903 (993)
T PLN02414        873 ----MSWP------------------VPGTLMIEPTESESKAELDRFCDALIS  903 (993)
T ss_pred             ----eccc------------------cCCEEEEEeeeeCCHHHHHHHHHHHHH
Confidence                1112                  247899999999999999999999865

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.31  E-value=7.3e-10  Score=101.65  Aligned_cols=176  Identities=15%  Similarity=0.057  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhHh--------CCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD--------KADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~--------g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      +...++++|++.        .++++++++++.+|+.. +.+|.+||-.|++++|.|+-......                
T Consensus       105 ~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~  184 (447)
T KOG0259|consen  105 ILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKD  184 (447)
T ss_pred             cHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCccc
Confidence            334555555552        25678888888999985 55689999999999997653321111                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---cc-C---CCeE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---LE-L---GADI  146 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~~-~---~~Di  146 (339)
                                                           ++|+++|+|+|+++|.||.|+-.++++ +   ++ +   -.-+
T Consensus       185 weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVi  264 (447)
T KOG0259|consen  185 WEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVI  264 (447)
T ss_pred             ceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceE
Confidence                                                 999999999999999999997665542 2   11 1   1147


Q ss_pred             EEeccccccccCCCceEEEEEEcCh-hHHH---HHHHHHHhcCCCCCh--HHHHHHHhchh-----hHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGE-RLAK---ELYFLQNAEGSGLAP--FDCWICLRGVK-----TMALRVEKQQDNAQ  215 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~-~l~~---~l~~~~~~~~~~~~~--~~a~~~~~~l~-----~~~~r~~~~~~~a~  215 (339)
                      .+++.||-.=-|||++|+ ++..+. ....   .+..+.++......|  +...++-.-|+     -+..++.-+..|++
T Consensus       265 tlggisKrW~VPGWRlGW-i~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~  343 (447)
T KOG0259|consen  265 TLGGISKRWIVPGWRLGW-IALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNAD  343 (447)
T ss_pred             eecccccccccCCceeee-EEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHH
Confidence            789999998888988765 544432 1111   112233333322223  22222222222     24666777889999


Q ss_pred             HHHHHHhCCCCceEEecC
Q 019543          216 KIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p  233 (339)
                      ...++|++.|.+.+..-|
T Consensus       344 l~y~~Lk~IP~l~cp~kP  361 (447)
T KOG0259|consen  344 LCYSRLKDIPCLTCPVKP  361 (447)
T ss_pred             HHHHHHhcCCCcccCcCC
Confidence            999999999987643333

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.31  E-value=1.2e-10  Score=110.71  Aligned_cols=234  Identities=16%  Similarity=0.109  Sum_probs=141.6

Q ss_pred             chHHHHHHHHHhHhCC-C--eEEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchH----------------------
Q 019543           55 PTRDALESLLAKLDKA-D--RALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-~--~~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      ...++.++.++++++. +  .++++ +||+.|+.+ ++.++.+||.+++-.....+.+                      
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~~~~~~~g~  127 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEVNVAASSEDDGF  127 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEecccccCC
Confidence            5678899999999995 3  35544 677888975 5669999988776543211111                      


Q ss_pred             -------H-HHH-------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCC
Q 019543          108 -------R-LLS-------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHS  159 (339)
Q Consensus       108 -------~-~~~-------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~  159 (339)
                             . .++                   ..|.++   ||++++||.+++.|... +.-+  .|++++|.+|++|.+|
T Consensus       128 ~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i---~g~l~vVDavss~g~~~idv~~--~d~~~~ssqK~lgP~G  202 (360)
T PRK05355        128 TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT---GDVPLVADMSSDILSRPIDVSK--FGLIYAGAQKNIGPAG  202 (360)
T ss_pred             CCCCChhhccCCCCCCEEEEccCCCcceEecCccccc---CCCcEEEEcCccccCccCCHHH--ccEEEEeccccccCCc
Confidence                   0 010                   256555   89999999999888642 2222  3699999999997443


Q ss_pred             CceEEEEEEcChhHHHHHHH-H----------HHhcCCCCChHHHH-HHHhchh------hHHHHHHHHHHHHHHHHHHH
Q 019543          160 DVMAGVLAVKGERLAKELYF-L----------QNAEGSGLAPFDCW-ICLRGVK------TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~-~----------~~~~~~~~~~~~a~-~~~~~l~------~~~~r~~~~~~~a~~l~~~L  221 (339)
                         .|+++.++ ++.+++.. .          ........++.... .+..+|+      .++.+.++.++.++++.++|
T Consensus       203 ---lg~l~~s~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l  278 (360)
T PRK05355        203 ---LTIVIVRE-DLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI  278 (360)
T ss_pred             ---eEEEEECH-HHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence               46777775 45444332 1          00111222333222 2222222      24566777778899999999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      ++++.+..  +.    .+.+       + ...+++|.+++.....++.+.+...|+.+..|             |.    
T Consensus       279 ~~~~~~~~--~~----~~~~-------r-s~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~-------------~~----  327 (360)
T PRK05355        279 DSSDFYRN--PV----APED-------R-SRMNVPFTLADEELDKKFLAEAKAAGLVGLKG-------------HR----  327 (360)
T ss_pred             HhCCCccc--CC----Chhh-------c-CCcEEEEEcCChHHHHHHHHHHHHCCCcccCC-------------CC----
Confidence            98863211  11    0100       1 23679998866533344544444444432211             10    


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                              ..+.+|+|++..++.+.|+.|.++|++
T Consensus       328 --------~~g~vRiS~~~~nt~eei~~l~~~l~~  354 (360)
T PRK05355        328 --------SVGGMRASIYNAMPLEGVQALVDFMKE  354 (360)
T ss_pred             --------ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence                    136799999999999989999998875

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.30  E-value=1.9e-10  Score=111.69  Aligned_cols=164  Identities=15%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             CCchHHHHHHHHHhHhC-CCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g-~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++...+|.++|+++.+ .+.+++++||++|+.+.+.   .....++|++..+.|+|..                     
T Consensus        86 ~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~  165 (423)
T TIGR00713        86 PTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPG  165 (423)
T ss_pred             CCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCC
Confidence            34557788889988775 3578899999999975333   2334577777665555421                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR  138 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~  138 (339)
                                           ..+.                            ++|.++|++||+++|+||+|.....+.
T Consensus       166 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~  245 (423)
T TIGR00713       166 VPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL  245 (423)
T ss_pred             CCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc
Confidence                                 0110                            899999999999999999984211111


Q ss_pred             -----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH---HhcCCCCChHHHHHHHhchhhHHH--HHH
Q 019543          139 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTMAL--RVE  208 (339)
Q Consensus       139 -----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---~~~~~~~~~~~a~~~~~~l~~~~~--r~~  208 (339)
                           ......|++  +|+|.+++ | ..+|++++++ ++.+.+....   ...+...+|..++.++..|+.+..  ..+
T Consensus       246 ~~~~~~~~~~pDi~--t~sK~l~~-G-~pig~v~~~~-~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~  320 (423)
T TIGR00713       246 GGAQEYFGVEPDLT--TLGKIIGG-G-LPVGAFGGRR-EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYT  320 (423)
T ss_pred             chhHHHhCCCcchh--hhhhhhcC-C-CceeeeeEHH-HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHH
Confidence                 112234644  79999983 4 4567888774 6777665311   112346678777776666665432  233


Q ss_pred             HHHHHHHHHHHHH
Q 019543          209 KQQDNAQKIAEFL  221 (339)
Q Consensus       209 ~~~~~a~~l~~~L  221 (339)
                      +.++..+++.+.|
T Consensus       321 ~~~~~~~~~~~~l  333 (423)
T TIGR00713       321 ELDELAKRLAEGL  333 (423)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444443

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.29  E-value=5.6e-11  Score=112.73  Aligned_cols=238  Identities=17%  Similarity=0.150  Sum_probs=137.2

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCc-HHHHHHHH-HHhcC---CCCEEEEcCCCc---------c-------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTS-GMAALAAV-THLLG---TGEEIVAGDDLY---------G-------------  104 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~s-G~~A~~~i-l~ll~---~GD~Vi~~~~~y---------~-------------  104 (339)
                      ...++.++.++++++++   .++++++ ||.|+.++ ..+++   +||+|++.....         +             
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~  123 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGK  123 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecccccC
Confidence            45788899999999962   3556555 89999864 45766   677776532111         0             


Q ss_pred             --chHHHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCc
Q 019543          105 --GTDRLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       105 --~~~~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                        .......                    -.+.++++.||++++||.+++.|... +.-++  |+++.|.+|++|.+|  
T Consensus       124 ~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~~i~~~~g~~~~VDa~qs~g~~~idv~~~--~~~~ss~~K~lGP~G--  199 (355)
T cd00611         124 YTKIPDVETWDLAPDAAYVHYCSNETIHGVEFDEVPDTGGVPLVADMSSNILSRPIDVSKF--GVIYAGAQKNLGPAG--  199 (355)
T ss_pred             CCCCCCHhhcCCCCCCCEEEEeCCcccccEEcceecccCCCeEEEEccccccCCCCCHHHh--CEEEeecccccCCCc--
Confidence              0000010                    22446777899999999999988652 22223  466676899997443  


Q ss_pred             eEEEEEEcChhHHHHHHHH-------H---H-hcCCCCChHHHH-HHHhchhh------HHHHHHHHHHHHHHHHHHHhC
Q 019543          162 MAGVLAVKGERLAKELYFL-------Q---N-AEGSGLAPFDCW-ICLRGVKT------MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~-------~---~-~~~~~~~~~~a~-~~~~~l~~------~~~r~~~~~~~a~~l~~~L~~  223 (339)
                       .|+++.++ ++.+++...       .   . ......++.... .+..+|+.      ++.+.++.++.++++.++|++
T Consensus       200 -~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~  277 (355)
T cd00611         200 -VTVVIVRK-DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN  277 (355)
T ss_pred             -eEEEEECH-HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence             46777765 455443321       1   0 011223333222 22223332      445566667888999999999


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCc-ceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~-~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +|++    |.... .+.         ..+ .+++|.+++.....++.+.      .++-|..       ....|.     
T Consensus       278 ~~gl----~~~~~-~~~---------~rs~~vvsf~~~~~~l~~~~~~~------~~r~G~~-------~~~~~~-----  325 (355)
T cd00611         278 SNGF----YRGPV-DKR---------ARSRMNVPFRLGKEELEKEFLKE------AEAAGMI-------GLKGHR-----  325 (355)
T ss_pred             Cccc----cccCC-CHH---------HcCceEEEEEcCChhhhHHHHHH------HHHCCCc-------ccCCCc-----
Confidence            8764    21111 110         123 5699998664111222222      2233321       111121     


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                             ..+.+|+|++..++++.|+.|.++|+++
T Consensus       326 -------~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         326 -------SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             -------ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence                   1368999999999999999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.28  E-value=1.4e-09  Score=103.86  Aligned_cols=174  Identities=18%  Similarity=0.214  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHhHhCCC--e--EEEcCcHHHHHHH-HHH--hcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           56 TRDALESLLAKLDKAD--R--ALCFTSGMAALAA-VTH--LLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~--~l~~~sG~~A~~~-il~--ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .-++..+.+++++|.+  +  ..++++|+++|.. +..  -..++++|++++..+.......+                 
T Consensus        66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~i  145 (380)
T PRK02769         66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEI  145 (380)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcC
Confidence            4445666778999864  3  3667777999863 332  24688999998765544432211                 


Q ss_pred             ----------------------------------HHHHHHHHHcC---CEEEEeCCcCCCCCc---C--cc--cCCCeEE
Q 019543          112 ----------------------------------RKIAEMAHAHG---ALLLVDNSIMSPVLS---R--PL--ELGADIV  147 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g---~~livD~a~a~g~~~---~--~~--~~~~Di~  147 (339)
                                                        ++|.++|++||   +++.+|.|++.+...   .  ++  ..++|.+
T Consensus       146 d~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsi  225 (380)
T PRK02769        146 DYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSI  225 (380)
T ss_pred             cHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEE
Confidence                                              99999999998   699999999876542   1  12  2278999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--------cCCCC--ChHHHHHHHhc--hhhHHHHHHHHHHHHH
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSGL--APFDCWICLRG--VKTMALRVEKQQDNAQ  215 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------~~~~~--~~~~a~~~~~~--l~~~~~r~~~~~~~a~  215 (339)
                      +.|.+|++++|-+  .|+++.++ +..+.+.....+        .|+..  ..+..|.++..  .+.+.+..++..++++
T Consensus       226 s~s~HK~~~~P~g--~G~l~~r~-~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~  302 (380)
T PRK02769        226 AISGHKFIGSPMP--CGIVLAKK-KYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQ  302 (380)
T ss_pred             EECCcccCCCCCC--cEEEEEeh-hhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence            9999999986643  46777775 344433211111        12221  12233333332  3345677788889999


Q ss_pred             HHHHHHhCCCCceEEecC
Q 019543          216 KIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p  233 (339)
                      ++.+.|+.. ++..+..|
T Consensus       303 ~l~~~L~~~-g~~~~~~p  319 (380)
T PRK02769        303 YAVDRLQAN-GIPAWRNP  319 (380)
T ss_pred             HHHHHHHhC-CCEEEcCC
Confidence            999999874 56555544

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.27  E-value=3.3e-10  Score=111.84  Aligned_cols=148  Identities=14%  Similarity=0.113  Sum_probs=91.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....||  .+++|.+++..-.+|+ +++++ ++.+.+...     
T Consensus       284 ~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDi--vtlgK~lggG~~PigA-v~~~~-~i~d~~~~~~~~~~  359 (504)
T PLN02760        284 EKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL--VSLAKALSSAYMPIGA-VLVSP-EISDVIHSQSNKLG  359 (504)
T ss_pred             HHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcE--EEecccccCCccccce-EeecH-HHHhhhhccccccc
Confidence            99999999999999999999 56544322     1223586  4579999853112444 55654 677766431     


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                        ...++..-+|..+++++..|+.+.+  ..++.++..+++.+.|+.+..     +|...          ..+|.|.++.
T Consensus       360 ~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~-----~~~v~----------~vrG~Gl~~g  424 (504)
T PLN02760        360 SFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSG-----SPIIG----------EIRGTGLILG  424 (504)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-----CCCee----------eEEeCceEEE
Confidence              1122345578888888877776643  356666777777777765411     22110          0256788888


Q ss_pred             EeeCCH-----------HHHHHHHccCCcceee
Q 019543          257 FLTGSL-----------ALSKHVVETTKYFSIT  278 (339)
Q Consensus       257 ~~~~~~-----------~~~~~~~~~L~~~~i~  278 (339)
                      |.+.+.           +.+..+.+.+...|+.
T Consensus       425 ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl  457 (504)
T PLN02760        425 TEFVDNKSPNDPFPAEWGVGAYFGAECKKRGML  457 (504)
T ss_pred             EEEecCCcccccccchhHHHHHHHHHHHhCCcE
Confidence            877321           1244566666665654

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.27  E-value=6.7e-10  Score=108.38  Aligned_cols=174  Identities=11%  Similarity=0.158  Sum_probs=109.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....|++  +++|.+++.  ..+|++++++ ++.+.+......++
T Consensus       231 ~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~G--~p~gav~~~~-~i~~~~~~~~~~~T  305 (445)
T PRK08593        231 EALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAGG--MPMSAIVGRK-EIMESLEAPAHLFT  305 (445)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccCC--cccEEEEEcH-HHHhhhccCCCCCC
Confidence            89999999999999999998 44432221     12234755  689999852  4467777764 67666642222346


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|..++.++..|+.+.  ...++.++..+++.+.|++    ++.|..|                  +|.|.++.+.+
T Consensus       306 ~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v------------------rG~Gl~~gi~l  367 (445)
T PRK08593        306 TGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDV------------------RGYGLSIGIDI  367 (445)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEE------------------eccceEEEEEE
Confidence            6778888777777776653  2345555666667666654    3333222                  34666777765


Q ss_pred             C--------CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHH
Q 019543          260 G--------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  331 (339)
Q Consensus       260 ~--------~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~  331 (339)
                      .        +...+..+.+.+...|+.+.          +                 ...+.+|+++.+.++++.|+.+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~----------~-----------------~~~~~lr~~p~l~~t~~~id~~~  420 (445)
T PRK08593        368 VSDKKLKTRDNEAALKICNYCFEHGVVII----------A-----------------VAGNVLRFQPPLVITYEQLDTAL  420 (445)
T ss_pred             ecCCCcCCCcHHHHHHHHHHHHHCCeEEe----------c-----------------cCCCEEEEECCCccCHHHHHHHH
Confidence            2        22345667777766665432          1                 01257899998877777776666


Q ss_pred             HHHh
Q 019543          332 KALR  335 (339)
Q Consensus       332 ~al~  335 (339)
                      ++++
T Consensus       421 ~~l~  424 (445)
T PRK08593        421 NTIE  424 (445)
T ss_pred             HHHH
Confidence            6654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.27  E-value=1.9e-10  Score=111.59  Aligned_cols=177  Identities=15%  Similarity=0.157  Sum_probs=111.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCC--CcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPV--LSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----  179 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~--~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~-----  179 (339)
                      ++|.++|++||+++|+||+| +|.  .+..     .....||++  ++|.++| |-...+.++.++ ++.+.+..     
T Consensus       231 ~~l~~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~~p~~a~~~~~-~i~~~~~~~~~~~  305 (429)
T PRK06173        231 VKARELCDQYGVLLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTG-GYLTLSATITTE-AIAQTICSGEAKC  305 (429)
T ss_pred             HHHHHHHHHcCCeEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhC-CccccceEEecH-HHHHHHhcCCCCc
Confidence            89999999999999999999 553  1222     122457776  8999974 212345565654 56666542     


Q ss_pred             HHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          180 LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       180 ~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                      +....+...+|..++.++..|+.+.+  ..++.+++.+++.+.|+...+     +|.+.          ..++.|.++++
T Consensus       306 ~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~-----~~~v~----------~vRg~Gl~~~i  370 (429)
T PRK06173        306 FMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAE-----FDSVA----------EVRVLGAIGVV  370 (429)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCCee----------eeeccceEEEE
Confidence            11111345678888888777776642  356666777788887764311     22110          02457889999


Q ss_pred             eeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe----ccCCHHHHHHHHHHH
Q 019543          258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDKA  333 (339)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv----g~e~~~~li~~l~~a  333 (339)
                      ++++...+.++.+.|.+.|+.+...+                            +.|||..    +.++.+..++.|.++
T Consensus       371 el~~~~~~~~i~~~l~e~Gi~v~~~g----------------------------~~l~~~Ppl~it~~ei~~~~~~l~~~  422 (429)
T PRK06173        371 EMKEPVNMATLQPRFVEHGIWVRPFG----------------------------KLVYIMPPFIISPDELSQLTSGLLRV  422 (429)
T ss_pred             EeCCcccHHHHHHHHHHCCeEEEecC----------------------------CEEEEeCCccCCHHHHHHHHHHHHHH
Confidence            99765455677888877777654221                            3455554    445666667777777


Q ss_pred             Hhc
Q 019543          334 LRT  336 (339)
Q Consensus       334 l~~  336 (339)
                      |++
T Consensus       423 l~~  425 (429)
T PRK06173        423 LKQ  425 (429)
T ss_pred             HHH
Confidence            654

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.27  E-value=2.3e-10  Score=110.98  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCC--CcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH---
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPV--LSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~--~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---  181 (339)
                      ++|.++|++||+++|+||+| +|.  .+..     .....||++  ++|.++|. -...|.+++++ ++.+.+....   
T Consensus       229 ~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG-~~p~~av~~~~-~i~~~~~~~~~~~  303 (428)
T PRK07986        229 KRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTGG-TMTLSATLTTR-EVAETISNGEAGC  303 (428)
T ss_pred             HHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhCC-cccCcchhchH-HHHHHhhcCCCCc
Confidence            89999999999999999998 443  2222     122347774  89999742 12345555554 6777665311   


Q ss_pred             --HhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          182 --NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       182 --~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                        ...+...+|..++.++..|+.+++  ..++.+++.+++.+.|+.+..     +|.+.          ..+|.|.++++
T Consensus       304 ~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~-----~~~i~----------~vRg~Gl~~~v  368 (428)
T PRK07986        304 FMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRD-----APMVA----------DVRVLGAIGVV  368 (428)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-----CCCEE----------eEeccceEEEE
Confidence              112345578888777777776542  356666777777777765311     22110          12467889999


Q ss_pred             eeCCHHHHHHHHccCCcceeecc
Q 019543          258 LTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                      ++.++..+..+.+.+.+.|+.+.
T Consensus       369 e~~~~~~~~~~~~~l~~~Gl~~~  391 (428)
T PRK07986        369 ETTRPVNMAALQRFFVEQGVWIR  391 (428)
T ss_pred             EeCCcccHHHHHHHHHHCCcEEE
Confidence            88654445677777777676543

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.27  E-value=1e-11  Score=114.82  Aligned_cols=120  Identities=29%  Similarity=0.398  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCC---CccchHHHHH----------------------
Q 019543           57 RDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD---LYGGTDRLLS----------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~---~y~~~~~~~~----------------------  111 (339)
                      ...+++.++.+.|+|+++++++..+|+..++.-+.+|-+||++.-   .+++.+++.+                      
T Consensus        49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~~~D  128 (367)
T PF03841_consen   49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHLSD  128 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346888999999999999999999999877765567778888753   3444332111                      


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCC-------CCC-----cCcccCCCeEEE
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMS-------PVL-----SRPLELGADIVM  148 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~-------g~~-----~~~~~~~~Di~~  148 (339)
                                                     ++++++|++||+++|+|...+.       |..     ...+..|+|+++
T Consensus       129 ye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~  208 (367)
T PF03841_consen  129 YEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVT  208 (367)
T ss_dssp             --------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEE
T ss_pred             ccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEE
Confidence                                           9999999999999999987531       111     123567999999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHH
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFL  180 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~  180 (339)
                      +|..|.+|||   ++|+|++++ +++++++.-
T Consensus       209 fSGdKlLGGP---QaGiI~Gkk-~lI~~lk~~  236 (367)
T PF03841_consen  209 FSGDKLLGGP---QAGIIVGKK-ELIEKLKKH  236 (367)
T ss_dssp             EETTSSSSS----S-EEEEEEH-HHHHHHHHH
T ss_pred             EECCCcCCCC---CeEEEEeCH-HHHHHHhhC
Confidence            9999999986   479999875 799988753

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=3.2e-11  Score=110.72  Aligned_cols=243  Identities=14%  Similarity=0.169  Sum_probs=154.0

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      ..|-.||+++|++.|+|++++.+-|.+++.. +-++.+.||.|+++.-...+...-++                      
T Consensus       139 DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~  218 (467)
T KOG1358|consen  139 DVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLP  218 (467)
T ss_pred             eeecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhcc
Confidence            5678999999999999999999999999985 55689999999987654333221110                      


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc------c-CCCeEE
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL------E-LGADIV  147 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~------~-~~~Di~  147 (339)
                                                        ++|+++..||...|++|+++++|+.++   .+      + ..+|++
T Consensus       219 E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv  298 (467)
T KOG1358|consen  219 EQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIV  298 (467)
T ss_pred             CcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeee
Confidence                                              999999999999999999999887643   21      1 245899


Q ss_pred             EeccccccccCCCceEEEEEEcChhH--HHHHHHHHHhcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHh
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERL--AKELYFLQNAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l--~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~  222 (339)
                      ++|+.-+++.    .||+.+++. -+  .+++......++..++|..+..+...+..+   +++.+.+++....+-..|+
T Consensus       299 ~~sm~~alas----~GgFc~G~~-~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~  373 (467)
T KOG1358|consen  299 TASMETALAS----GGGFCAGKS-FIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALS  373 (467)
T ss_pred             eecccccccc----cCceeecce-eeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhh
Confidence            9999999983    477887743 22  233443444567888998776666555443   3445555555555555555


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC----HHHH----HHHHccCCcceeecccCCcccceeccccc
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALS----KHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~----~~~~----~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      ...++....-|                 .++++-+.+..    .++-    .++++..-..++.+.         .....
T Consensus       374 ~~s~~~v~~~~-----------------~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~---------~a~~~  427 (467)
T KOG1358|consen  374 SNSGFIVSGSP-----------------ESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLT---------RAKYL  427 (467)
T ss_pred             cCCceEEecCc-----------------CCceeeeeecccccchHHHHHHHHHHHHHHHhhcceeh---------hhhhh
Confidence            54433322222                 45666665532    2222    223333211122211         11000


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             +..+...+ +..|||++...++++.++.+.+.+++
T Consensus       428 -------~~~e~~~~-~pSiri~~~a~~seeel~ra~~~ik~  461 (467)
T KOG1358|consen  428 -------EKLERCPI-PPSIRICVSAGMSEEELERAAELIKE  461 (467)
T ss_pred             -------hhcccCCC-CCcEEEEEeCCCCHHHHHHHHHHHHH
Confidence                   11112222 24589999999999988888887764

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.26  E-value=3e-10  Score=107.95  Aligned_cols=241  Identities=10%  Similarity=0.068  Sum_probs=137.4

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEc-CcHHHHHHHH-HHhcCCCCEEEEcCCCccchH-------------HHHH-----
Q 019543           55 PTRDALESLLAKLDKAD---RALCF-TSGMAALAAV-THLLGTGEEIVAGDDLYGGTD-------------RLLS-----  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~-~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~-------------~~~~-----  111 (339)
                      ...++.++.++++++.+   .++++ .||+.++.++ ..++.+...++ ..-.|+...             ..+.     
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~~~l~i-~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEKKSLHL-SFGEFSSKFAKAVKLAPWLGEPIIVTADPGS  119 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccccccEE-ecCHHHHHHHHHHHhhhccCCceEEecCCCC
Confidence            56788899999999973   34554 5589999854 45653322222 122121000             0000     


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEE
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVL  166 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v  166 (339)
                                               .-|.+++|++|+++++|.+++.|...-... .+|++++|.+|+++++++  .+++
T Consensus       120 ~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I~~~~g~~~iVDavqs~g~~~idv~-~~D~~~~s~~K~lg~~~G--l~~~  196 (361)
T TIGR01366       120 APEPQADPGVDVIAWAHNETSTGVAVPVRRPEGSDDALVVIDATSGAGGLPVDIA-ETDVYYFAPQKNFASDGG--LWLA  196 (361)
T ss_pred             CCCCccCCCCCEEEEcccCCccceecccccccccCCCeEEEEcCccccCCCCCHH-HCCEEEEEchhhcCCCCc--eEEE
Confidence                                     223445799999999999999886532222 379999999999998753  3455


Q ss_pred             EEcChhHHHHHHHH----------HHh-------c--C-CCCChHHHH-HHHhchhh------HHHHHHHHHHHHHHHHH
Q 019543          167 AVKGERLAKELYFL----------QNA-------E--G-SGLAPFDCW-ICLRGVKT------MALRVEKQQDNAQKIAE  219 (339)
Q Consensus       167 ~~~~~~l~~~l~~~----------~~~-------~--~-~~~~~~~a~-~~~~~l~~------~~~r~~~~~~~a~~l~~  219 (339)
                      +.++ ++.+++...          ...       .  + ...++.... .+..+++.      ++.+.++..+.++++.+
T Consensus       197 ~~s~-~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~  275 (361)
T TIGR01366       197 IMSP-AALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYS  275 (361)
T ss_pred             EECH-HHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            5554 455544321          100       0  1 122222211 11222222      34456777788889999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      ++++.+.++.+. +.    +.+      .....++++|. .+ .....+.+.|+..||.+..|.      ..        
T Consensus       276 ~l~~~~~~~~~~-~~----~~~------~s~~v~~v~~~-~g-~~~~~v~~~L~~~gI~i~~~~------~~--------  328 (361)
T TIGR01366       276 WAQERPYATPFV-TD----PGK------RSQVVGTIDFV-DD-IDAATVAKILRANGIVDTEPY------RK--------  328 (361)
T ss_pred             HHHhCCCcccCC-CC----hhh------cccceEEEECC-Cc-cCHHHHHHHHHHCCCeeccCc------cc--------
Confidence            999887543211 11    000      00112455552 33 344567777766677653211      00        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                               +....+|+|++..++++.|+.|.+||+.
T Consensus       329 ---------l~~~~vRis~~~~~t~~di~~l~~al~~  356 (361)
T TIGR01366       329 ---------LGRNQLRVAMFPAIDPDDVEALTECVDW  356 (361)
T ss_pred             ---------cCCCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence                     1235799999998888888888888874

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.25  E-value=1.7e-09  Score=104.90  Aligned_cols=146  Identities=12%  Similarity=0.177  Sum_probs=83.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .+..+.     ......|++  +++|.+++ | ...|++++++ ++.+.+.......+
T Consensus       221 ~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~--~lsK~l~~-G-~pig~v~~~~-~i~~~~~~~~~~~T  295 (420)
T TIGR00700       221 PALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLI--TTAKSLAD-G-LPLSGVTGRA-EIMDAPAPGGLGGT  295 (420)
T ss_pred             HHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEE--EeeccccC-C-cceEEEEecH-HHHhhcCCCCcCCC
Confidence            899999999999999999984 322221     112235754  48999994 4 4456777764 66665543222234


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|+.+++++..|+.+.  ...++..+..+++.+.|+    .+|.+..+                  ++.|.++++.+
T Consensus       296 ~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v------------------rg~G~~~~i~~  357 (420)
T TIGR00700       296 YAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDV------------------RGLGAMIAVEL  357 (420)
T ss_pred             CCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEe------------------eccceEEEEEE
Confidence            5567777766655554431  112222333334444443    33333222                  34577888876


Q ss_pred             C-------CHHHHHHHHccCCcceeecc
Q 019543          260 G-------SLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       260 ~-------~~~~~~~~~~~L~~~~i~v~  280 (339)
                      .       +.+.+.++.+.+...|+.+.
T Consensus       358 ~~~~~~~~~~~~~~~l~~~~~~~Gv~i~  385 (420)
T TIGR00700       358 VDPGTTEPDAGLAERIATAAHAAGLLLL  385 (420)
T ss_pred             ecCCCCCccHHHHHHHHHHHHHCCeEEe
Confidence            2       12335667766666676654

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.25  E-value=4.7e-10  Score=108.90  Aligned_cols=176  Identities=10%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCC--CcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH---
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPV--LSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~--~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---  181 (339)
                      ++|.++|++||+.+|+||+| +|.  .+..     .....||++  ++|.++| |-...+.++.+ +++.+.+....   
T Consensus       232 ~~l~~lc~~~~~llI~DEv~-tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~g-G~~p~~a~~~~-~~~~~~~~~~~~~~  306 (427)
T TIGR00508       232 KRVQALCKQYDILLIADEIA-TGFGRTGKLFACEHAGVVPDILC--VGKALTG-GYMTLSATVTT-DKVAQTISSGEAGC  306 (427)
T ss_pred             HHHHHHHHHcCCEEEEeccc-cCCCcCCccchhhhcCCCCCEEE--echhhhc-CcccceEEEEc-HHHHHHHhcCCCCc
Confidence            89999999999999999998 432  2221     123457776  7999974 22234566665 46766665311   


Q ss_pred             --HhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          182 --NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       182 --~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                        ...+...+|..++.++..|+.+.  ...++.+++.+++.+.|+++..     +|.+.+          .+|.|.+++|
T Consensus       307 ~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~i~~----------vrg~G~~~~i  371 (427)
T TIGR00508       307 FMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-----NPVVKD----------VRVLGAIGVV  371 (427)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCCEEe----------EeccccEEEE
Confidence              11223457887777777676543  2356667778888888876531     221110          2457899999


Q ss_pred             eeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .+.+...+..+.++|.+.|+.+.          +                  ....+|++.-+-++++.|+.+.++|+
T Consensus       372 ~~~~~~~~~~~~~~l~~~Gv~~~----------~------------------~~~~l~~~ppl~~t~~~id~~~~~l~  421 (427)
T TIGR00508       372 EMYKPVNVEELQKKFVEQGVWIR----------P------------------FGKLIYVMPPYIITTEQLQKLTAALI  421 (427)
T ss_pred             EECCccCHHHHHHHHHHCCeEEE----------e------------------cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            98654445677777777666543          1                  11357888776666665555555554

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06149 hypothetical protein; Provisional

Probab=99.25  E-value=8.4e-10  Score=117.16  Aligned_cols=146  Identities=14%  Similarity=0.176  Sum_probs=93.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc------ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-  183 (339)
                      ++|.++|++||+++|+||++ |.|-.+..      .....||+  +++|.+|+.  .-.|++++++ ++.+.+.....+ 
T Consensus       768 ~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~G--~Pl~av~~~~-~i~~~~~~~~~~~  842 (972)
T PRK06149        768 QQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGNG--HPLGAVITRR-EIAEALEAEGYFF  842 (972)
T ss_pred             HHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccCC--eeeEEEEEcH-HHHhhhccCCccc
Confidence            89999999999999999998 55544321      22345887  679999853  3456777764 666665431112 


Q ss_pred             cCCCCChHHHHHHHhchhhHHHH--HHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          184 EGSGLAPFDCWICLRGVKTMALR--VEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~~r--~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                      .+++.+|..+++++..|+.+.+.  .++.++..+++.+.|+++    |.|..                  .+|.|.++.+
T Consensus       843 sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------vrG~Gl~~gv  904 (972)
T PRK06149        843 SSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGA------------------VHGMGLYLGV  904 (972)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE------------------EeecceEEEE
Confidence            24567898888888888776422  333344446666666543    22221                  2457788888


Q ss_pred             ee-CC-------HHHHHHHHccCCcceeecc
Q 019543          258 LT-GS-------LALSKHVVETTKYFSITVS  280 (339)
Q Consensus       258 ~~-~~-------~~~~~~~~~~L~~~~i~v~  280 (339)
                      ++ .+       .+.+..+.+.+.+.|+.+.
T Consensus       905 el~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~  935 (972)
T PRK06149        905 ELVRDRQTLEPATEETAAICDRLLELGVIMQ  935 (972)
T ss_pred             EEecCcccCCCChHHHHHHHHHHHhCCeEEe
Confidence            76 21       2345677877777777554

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.25  E-value=4.7e-10  Score=117.55  Aligned_cols=227  Identities=20%  Similarity=0.218  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHH-HHh-cCC--CCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL-LGT--GEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~i-l~l-l~~--GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ...++++.++++.|.+  ++-++.+++++..++ +++ +++  +|+|++++..|+.+...++                  
T Consensus       122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d  201 (954)
T PRK05367        122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA  201 (954)
T ss_pred             HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC
Confidence            4567788899999976  457778888877643 332 455  4999999999887764432                  


Q ss_pred             -----------------------HHHHHHHHHcCCEEEEeCCc-CCCCCcCcccCCCeEEEeccccc-----cccCCCce
Q 019543          112 -----------------------RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKF-----IAGHSDVM  162 (339)
Q Consensus       112 -----------------------~~I~~la~~~g~~livD~a~-a~g~~~~~~~~~~Di~~~S~sK~-----l~g~~~~~  162 (339)
                                             ++|+++||++|+++++|..+ +.+...++-++|+||+++|.+|+     +|||+   
T Consensus       202 ~~~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~---  278 (954)
T PRK05367        202 LDHDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPH---  278 (954)
T ss_pred             CCcccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCC---
Confidence                                   89999999999999999977 44455566678999999999999     77664   


Q ss_pred             EEEEEEcChhHHHHHHHH-------------------------HHhcCCCCChHHH------HHHH-----hchhhHHHH
Q 019543          163 AGVLAVKGERLAKELYFL-------------------------QNAEGSGLAPFDC------WICL-----RGVKTMALR  206 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~-------------------------~~~~~~~~~~~~a------~~~~-----~~l~~~~~r  206 (339)
                      .|++++++ ++.+.+...                         ++..+  .+.+..      .++.     .+=.-+...
T Consensus       279 aGflavr~-~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRreka--TsNict~qaL~a~~a~~y~~~~g~~Gl~~I  355 (954)
T PRK05367        279 AAYFAVRD-AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKA--TSNICTAQVLLAVMASMYAVYHGPEGLKAI  355 (954)
T ss_pred             EEEEEECH-HHHhhCCCCeeeeecccCCCccccccccccccccccccc--ccccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            68999885 454443210                         00001  111111      1100     000112333


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .++...++.++++.|+. .+++.+ ++.                ....+.|.++.  .+.++.++|...|+.++.     
T Consensus       356 a~~~~~la~~l~~~L~~-~G~~~~-~~~----------------~f~~~~~~~~~--~~~~i~~~l~~~gi~~~~-----  410 (954)
T PRK05367        356 ARRVHRLAAILAAGLRA-LGLEVV-HDS----------------FFDTLTVEVGG--DAAAVLARALAAGINLRR-----  410 (954)
T ss_pred             HHHHHHHHHHHHHHHHh-cCcccC-CCC----------------CCCeEEEeCCC--CHHHHHHHHHHCCceecc-----
Confidence            34455677888888866 444321 111                23577777642  345677777766664321     


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                            +.++.||+|+...++++.|+.|.++|.
T Consensus       411 ----------------------~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        411 ----------------------VDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             ----------------------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence                                  124679999999999999999999986

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.24  E-value=6.9e-10  Score=107.49  Aligned_cols=188  Identities=16%  Similarity=0.106  Sum_probs=111.4

Q ss_pred             HHHHHHHHHc------CCEEEEeCCcCCCCC----c----CcccCCCeEEEeccccccccCCCceEEEEEEcChh-HHHH
Q 019543          112 RKIAEMAHAH------GALLLVDNSIMSPVL----S----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKE  176 (339)
Q Consensus       112 ~~I~~la~~~------g~~livD~a~a~g~~----~----~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l~~~  176 (339)
                      ++|+++|+++      |+++.+|.+++.+..    .    +....++|.++.|.+|++.+|-+  .|+++.++++ +.+.
T Consensus       206 ~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~  283 (431)
T TIGR01788       206 KALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEE  283 (431)
T ss_pred             HHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC--cEEEEEeChHHcchh
Confidence            9999999999      999999999984321    1    11123679999999999855532  4777776643 2222


Q ss_pred             HHHHHHhcCCC-----C--C-h----HHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchH
Q 019543          177 LYFLQNAEGSG-----L--A-P----FDCWICLRG--VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  242 (339)
Q Consensus       177 l~~~~~~~~~~-----~--~-~----~~a~~~~~~--l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~  242 (339)
                      +.....+.+..     +  + +    +..|+.+..  .+.+.+..++..++++++.+.|++.++++.+. |.    |   
T Consensus       284 ~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~-~~----~---  355 (431)
T TIGR01788       284 LIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS-DG----S---  355 (431)
T ss_pred             heecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-CC----C---
Confidence            21111111111     0  0 1    123333332  34467777888899999999999998876553 21    1   


Q ss_pred             hHhhhcCCCcceEEEeeCC----HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          243 LHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       243 ~~~~~~~~~~~ivs~~~~~----~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                              ..++++|.+.+    .....++.++|...|+.+..      ...|...     .         ..-.+|+++
T Consensus       356 --------~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~------~~~p~~~-----~---------~~~~lR~~~  407 (431)
T TIGR01788       356 --------GIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPA------YTLPKNA-----E---------DIVVMRIVV  407 (431)
T ss_pred             --------CceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccC------CCCCCcc-----C---------CeEEEEEEe
Confidence                    46899998753    12345677777766654331      1112110     0         123589999


Q ss_pred             cc----CCHHHHHHHHHHHHhcC
Q 019543          319 GI----EDVNDLISDLDKALRTG  337 (339)
Q Consensus       319 g~----e~~~~li~~l~~al~~~  337 (339)
                      ..    +..++++++|.+++..+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       408 REGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhh
Confidence            63    44566666666666543

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.24  E-value=3.7e-10  Score=109.69  Aligned_cols=204  Identities=17%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++...+|.++|+++. +.+.+++++||++|+...+.+   ...+++|+..+..|+|..                     
T Consensus        88 ~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~  167 (426)
T PRK00062         88 PTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPG  167 (426)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCC
Confidence            3455667777777765 456788999999999754432   334678887776666532                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S  137 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~  137 (339)
                                           ..+.                            ++|.++|++||+++|+||+|. |.. +
T Consensus       168 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g  246 (426)
T PRK00062        168 VPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVA  246 (426)
T ss_pred             CCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccC
Confidence                                 0110                            889999999999999999995 321 1


Q ss_pred             C-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--h-cCCCCChHHHHHHHhchhhHHH--HH
Q 019543          138 R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A-EGSGLAPFDCWICLRGVKTMAL--RV  207 (339)
Q Consensus       138 ~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~-~~~~~~~~~a~~~~~~l~~~~~--r~  207 (339)
                      .     ......|+  .+++|.+++ |. .+|++++++ ++.+.+.....  . .+...+|..++.++..|+.+..  ..
T Consensus       247 ~~~~~~~~~~~pDi--~~~gK~l~~-G~-p~ga~~~~~-~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~  321 (426)
T PRK00062        247 LGGAQGYYGVTPDL--TTLGKIIGG-GL-PVGAFGGRR-EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFY  321 (426)
T ss_pred             CccHHHHhCCCcch--HhhhhHhhC-CC-cceeeeEHH-HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHH
Confidence            1     11122364  578999984 33 345666664 67776642211  2 2346778777777777766543  45


Q ss_pred             HHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------HHHHHHHHc
Q 019543          208 EKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVE  270 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------~~~~~~~~~  270 (339)
                      ++.+++.+++.+.|++    ++.+..+                  ++.|.++.+++.+             ...+.++.+
T Consensus       322 ~~~~~~~~~~~~~l~~~~~~~~~~~~v------------------rg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~  383 (426)
T PRK00062        322 EELEALTKRLAEGLKEAAKKAGIPLTV------------------NRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFH  383 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCceEE------------------EEecceEEEEEecCCCcchhhhccccHHHHHHHHH
Confidence            5566666666666653    2321111                  3467888887742             123467787


Q ss_pred             cCCcceeecc
Q 019543          271 TTKYFSITVS  280 (339)
Q Consensus       271 ~L~~~~i~v~  280 (339)
                      .|...|+.+.
T Consensus       384 ~l~~~Gv~v~  393 (426)
T PRK00062        384 AMLDEGVYLA  393 (426)
T ss_pred             HHHHCCeEee
Confidence            7777776654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.23  E-value=1.1e-09  Score=106.68  Aligned_cols=177  Identities=16%  Similarity=0.146  Sum_probs=101.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|+||+| +.|-.+...     ....||+  +++|.+++..-.+|+ +++++ ++.+.+..-     
T Consensus       239 ~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~~P~ga-v~~~~-~i~~~~~~~~~~~~  314 (442)
T PRK13360        239 QRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGAIPMGA-VFVSS-EIHDAFMQGPEAGI  314 (442)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCccceEE-EEEcH-HHHHHhhcCCcccc
Confidence            89999999999999999998 555433321     2234766  679999853123455 55553 566655321     


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                        ...++...+|..++.++..|+.+.  ...++..++.+++.+.|+.+..     +|.+.+          .+|.|.++.
T Consensus       315 ~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v~~----------vrG~Gl~~~  379 (442)
T PRK13360        315 EFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-----APHVID----------IRNLGLVGA  379 (442)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-----CCCeee----------eeccceEEE
Confidence              112344567888777777777653  2345555666777777764321     111100          134455555


Q ss_pred             EeeC-----CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHH
Q 019543          257 FLTG-----SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  331 (339)
Q Consensus       257 ~~~~-----~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~  331 (339)
                      +.+.     +...+.++.+.+.+.|+.++.                            ..+.+||+.-+..+++.|+.+.
T Consensus       380 ~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~----------------------------~~~~lr~~Ppl~~t~~eid~~~  431 (442)
T PRK13360        380 VELAPRDGKPGKRAYEVFLKCFEKGLMIRY----------------------------TGDILALSPPLIIEEAQIDELF  431 (442)
T ss_pred             EEEecCCCCcchhHHHHHHHHHHCCcEEEe----------------------------cCCEEEEeCCCccCHHHHHHHH
Confidence            5441     122345666666666654431                            1256899976655555555555


Q ss_pred             HHHh
Q 019543          332 KALR  335 (339)
Q Consensus       332 ~al~  335 (339)
                      ++|+
T Consensus       432 ~~l~  435 (442)
T PRK13360        432 DILA  435 (442)
T ss_pred             HHHH
Confidence            5443

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.23  E-value=1e-09  Score=102.19  Aligned_cols=223  Identities=17%  Similarity=0.161  Sum_probs=128.4

Q ss_pred             eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           72 RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      +.+++++.+.++..++ .++..||+|+++.++|.+....++                                       
T Consensus       126 diiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~  205 (472)
T KOG0634|consen  126 DIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPH  205 (472)
T ss_pred             eEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCe
Confidence            4555555589998655 489999999999998876543222                                       


Q ss_pred             ---------------------HHHHHHHHHcCCEEEEeCCcCCCCCc------------------------CcccC---C
Q 019543          112 ---------------------RKIAEMAHAHGALLLVDNSIMSPVLS------------------------RPLEL---G  143 (339)
Q Consensus       112 ---------------------~~I~~la~~~g~~livD~a~a~g~~~------------------------~~~~~---~  143 (339)
                                           ++|.+||+||++++|+||.+....+.                        ..+..   |
T Consensus       206 vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdG  285 (472)
T KOG0634|consen  206 VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDG  285 (472)
T ss_pred             EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccc
Confidence                                 99999999999999999998542211                        01111   2


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH---HHh-c-----hhhHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLR-G-----VKTMALRVEKQQDNA  214 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~---~~~-~-----l~~~~~r~~~~~~~a  214 (339)
                      --|-..||||.++.  +.+-||+.+++ -++++..........+.+.+...+   .++ .     ++.+...........
T Consensus       286 rVIr~dSFSKiiaP--GlRlG~it~~~-~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rr  362 (472)
T KOG0634|consen  286 RVIRNDSFSKIIAP--GLRLGWITGNS-LFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERR  362 (472)
T ss_pred             cEEeccchhhhhcC--cceeEEeecCH-HHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23778999999993  36778998876 455655544433322233322221   111 1     122222222222223


Q ss_pred             HHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--------CHHHHHHHHcc-CCcceeecccCCc
Q 019543          215 QKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVET-TKYFSITVSFGSV  284 (339)
Q Consensus       215 ~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--------~~~~~~~~~~~-L~~~~i~v~~G~~  284 (339)
                      ..+...|.. +|.-.+...|.               ..|-.+||++.        +..+++++... +.+.|+.+-.|..
T Consensus       363 n~~l~Al~kylp~~~~~~~~P---------------~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~  427 (472)
T KOG0634|consen  363 NALLSALDKYLPKSVCEYHPP---------------KAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSW  427 (472)
T ss_pred             HHHHHHHHHhCCCCeeEEecC---------------CcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCce
Confidence            333333332 23322333331               14567788883        44555555443 4567888878876


Q ss_pred             ccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHH
Q 019543          285 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  328 (339)
Q Consensus       285 ~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~  328 (339)
                      +...  |-.      +        .++-.+|+|+...+.+++.+
T Consensus       428 F~v~--p~~------s--------~~kiffRls~a~a~~e~l~~  455 (472)
T KOG0634|consen  428 FMVD--PES------S--------WSKIFFRLSIAFAEPEKLDE  455 (472)
T ss_pred             eEEc--Ccc------C--------CCcceEEEEeecCCHHHHHH
Confidence            5432  211      0        12348999999988876533

>PRK07678 aminotransferase; Validated

Probab=99.23  E-value=2.5e-09  Score=104.52  Aligned_cols=180  Identities=19%  Similarity=0.212  Sum_probs=107.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      +++.++|++||+++|+||++ +.|-.+..     .....||++  ++|.+++.. .-.|.+++++ ++.+.+..-     
T Consensus       237 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~-~Pi~av~~~~-~i~~~~~~~~~~~~  312 (451)
T PRK07678        237 KAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAY-LPLSATAVKK-EIYEAFKGKGEYEH  312 (451)
T ss_pred             HHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCC-cceeEEEEcH-HHHHHHhccCcccc
Confidence            99999999999999999998 45433221     233458885  599999632 2245566654 566655421     


Q ss_pred             -HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcc
Q 019543          181 -QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGS  253 (339)
Q Consensus       181 -~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~  253 (339)
                       ....+..-+|..++.++..|+.+.+  ..++.++..+++.+.|++    ++.+..                  .+|.|.
T Consensus       313 ~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~------------------vrg~Gl  374 (451)
T PRK07678        313 FRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD------------------IRGKGL  374 (451)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE------------------EEeece
Confidence             1123456678888888877776643  344555556666666643    332221                  245678


Q ss_pred             eEEEeeC---------CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHH
Q 019543          254 VLSFLTG---------SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  324 (339)
Q Consensus       254 ivs~~~~---------~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~  324 (339)
                      ++.+++.         +...+.++.+.+...|+.+...       .|.+      +        -..+.|||+.-+.+++
T Consensus       375 ~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~-------g~~v------~--------~~~~~lrl~Ppl~it~  433 (451)
T PRK07678        375 LVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKN-------GDTV------A--------GYNNVLTLSPPLVISS  433 (451)
T ss_pred             EEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeec-------Cccc------c--------CCCCEEEEECCCcCCH
Confidence            8888862         2233567777777777655321       1111      0        0236799987765555


Q ss_pred             HHHHHHHHHH
Q 019543          325 DLISDLDKAL  334 (339)
Q Consensus       325 ~li~~l~~al  334 (339)
                      +.|+.+.++|
T Consensus       434 ~eid~~~~~l  443 (451)
T PRK07678        434 EEIAFIVGTL  443 (451)
T ss_pred             HHHHHHHHHH
Confidence            5444444444

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.22  E-value=9.4e-10  Score=106.67  Aligned_cols=146  Identities=11%  Similarity=0.142  Sum_probs=88.9

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .|..+..     .....|++  +++|.+++ | ...|++++++ ++.+.+.......+
T Consensus       222 ~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G-~pigav~~~~-~i~~~~~~~~~~~T  296 (421)
T PRK06777        222 SALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-G-MPISAVVGRA-EVMDAPAPGGLGGT  296 (421)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEE--eeehhhcC-C-CceEEEEEcH-HHHhccCCCCCCCC
Confidence            999999999999999999985 2222221     12235765  68999984 4 4466777764 66665543322234


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|..+++++..|+.++  ...++.++..+++.+.|+++    +.+..                  .++.|.++.+++
T Consensus       297 ~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G~~~~i~~  358 (421)
T PRK06777        297 YAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVD------------------IRARGSMVAVEF  358 (421)
T ss_pred             CCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEE------------------ecCceEEEEEEE
Confidence            4567887777777776542  34555556667777777653    22211                  134677887765


Q ss_pred             CCH-------HHHHHHHccCCcceeecc
Q 019543          260 GSL-------ALSKHVVETTKYFSITVS  280 (339)
Q Consensus       260 ~~~-------~~~~~~~~~L~~~~i~v~  280 (339)
                      ...       +.+..+.+.+.+.|+.+.
T Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~Gv~i~  386 (421)
T PRK06777        359 NDPQTGKPSPEFTRQYQRQALEEGLLLL  386 (421)
T ss_pred             ecCccCCccHHHHHHHHHHHHhCCeEEe
Confidence            321       224555555555666654

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.21  E-value=8.2e-10  Score=107.23  Aligned_cols=180  Identities=14%  Similarity=0.160  Sum_probs=100.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||+|. .|-.+.     ......|++  +++|.+++.| ...|++++++ ++ ..+.......+
T Consensus       222 ~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l~~~G-~pigav~~~~-~i-~~~~~~~~~~T  296 (425)
T PRK09264        222 QRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIV--TLSKSISGYG-LPMALVLIKP-EL-DVWKPGEHNGT  296 (425)
T ss_pred             HHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEE--EeccccCCCc-cceEEEEEch-hh-hccCCCccCCC
Confidence            999999999999999999984 222111     122345765  5689998644 4456777764 44 22211111112


Q ss_pred             CCCChHHHHHHHhchhh-H--HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH
Q 019543          186 SGLAPFDCWICLRGVKT-M--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  262 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~-~--~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~  262 (339)
                      ...+|...+.++..++. +  +...++.+++.+++.+.|+.+..    .+|....         ..++.|.++++.+.+.
T Consensus       297 ~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~----~~~~~~~---------~vrg~Gl~~~i~l~~~  363 (425)
T PRK09264        297 FRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAA----KYPGLGA---------EVRGRGMMQGIDFGDG  363 (425)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------cceecccEEEEEecCh
Confidence            33455555545455522 2  12344555666666666654311    1121100         0145678889999776


Q ss_pred             HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       263 ~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      +.+.++.+.+...|+.+...+                         .....||+++.+..+++.|+.+.++|
T Consensus       364 ~~~~~l~~~~~~~Gv~~~~~~-------------------------~~~~~lr~~p~l~~t~~ei~~~~~~l  410 (425)
T PRK09264        364 ELAGKIAAEAFENGLIIETSG-------------------------PEDEVVKLLPPLTIDEEELEEGLDIL  410 (425)
T ss_pred             HHHHHHHHHHHHCCCEEeccC-------------------------CCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            667788888777676543211                         12367999977555555444444443

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.21  E-value=8.4e-10  Score=106.91  Aligned_cols=148  Identities=9%  Similarity=0.113  Sum_probs=91.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCC--CcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPV--LSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~--~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----  180 (339)
                      ++|.++|++||+++|+||++ +|+  .+..     .....||+  +++|.++|. -..+|++++++ ++.+.+...    
T Consensus       225 ~~lr~lc~~~g~llI~DEv~-tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG-~~p~~av~~~~-~i~~~~~~~~~~~  299 (422)
T PRK05630        225 EGVRTLCDKHDILLIADEIA-TGFGRTGELFATLAAGVTPDIM--CVGKALTGG-FMSFAATLCTD-KVAQLISTPNGGG  299 (422)
T ss_pred             HHHHHHHHHcCCEEEEecce-eCCCcCchhhHHHhcCCCCCee--eeechhhcC-ccccceeeccH-HHHHHHhccCCCC
Confidence            99999999999999999998 443  2221     12234777  679999752 12356676664 566655421    


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                        ....+...+|..++.+...|+.+.+  ..++.+++.+++.+.|+.+.     .+|.+.          ..+|.|.++.
T Consensus       300 ~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~-----~~~~v~----------~vRg~Gl~~~  364 (422)
T PRK05630        300 ALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLA-----HLPGVA----------DVRVLGAIGV  364 (422)
T ss_pred             ccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-----cCCCee----------eeeccccEEE
Confidence              1122455678888777777766532  34455666677777665421     123211          0256789999


Q ss_pred             EeeCCHHHHHHHHccCCcceeec
Q 019543          257 FLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       257 ~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                      +++.+...+..+.+.+.+.|+.+
T Consensus       365 ie~~~~~~~~~~~~~~~~~Gl~~  387 (422)
T PRK05630        365 VEMEQPVDMEEATQAAVDHGVWL  387 (422)
T ss_pred             EEECCcccHHHHHHHHHHCCeEE
Confidence            99865433456777776666654

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.21  E-value=2.6e-09  Score=104.16  Aligned_cols=174  Identities=15%  Similarity=0.181  Sum_probs=107.2

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||+|. .|..+..     .....|++  +++|.+++ | ...|++++++ ++.+.+......++
T Consensus       228 ~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G-~pigav~~~~-~i~~~~~~~~~~~T  302 (443)
T PRK08360        228 KKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGG-G-LPISATIGRA-EIMDSLPPLAHAFT  302 (443)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE--EecccccC-C-ceeEEEEEcH-HHHhhhcCCCCCCC
Confidence            899999999999999999985 3332221     12234765  67999994 4 4567777764 67766653322345


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|..++.+...|+.+.  ...++.+++.+++.+.|+++    +.+..                  .++.|.++.+++
T Consensus       303 ~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrg~Gl~~gie~  364 (443)
T PRK08360        303 LSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGD------------------VRGIGLMIGVDL  364 (443)
T ss_pred             CCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eeccceEEEEEE
Confidence            5667777777766666653  23455555666666666542    22211                  245678888876


Q ss_pred             C-C-------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHH
Q 019543          260 G-S-------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  331 (339)
Q Consensus       260 ~-~-------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~  331 (339)
                      . +       ...+.++.+.+...|+.+..                           ...+.+|++..+..+++.|+.+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---------------------------~~~~~lr~~P~l~~t~~~id~~~  417 (443)
T PRK08360        365 VKDRETKERAYEEAAKVVWRAWELGLIVTF---------------------------FSGNVLRIQPPLTIEKEVLDEGL  417 (443)
T ss_pred             ecCCcccCccHHHHHHHHHHHHHCCeEEee---------------------------cCCCEEEEeCCCCCCHHHHHHHH
Confidence            3 2       13355677777666664421                           02367899887766666666555


Q ss_pred             HHHh
Q 019543          332 KALR  335 (339)
Q Consensus       332 ~al~  335 (339)
                      ++++
T Consensus       418 ~~l~  421 (443)
T PRK08360        418 DILE  421 (443)
T ss_pred             HHHH
Confidence            5554

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.21  E-value=5.2e-10  Score=117.26  Aligned_cols=244  Identities=21%  Similarity=0.230  Sum_probs=146.7

Q ss_pred             hHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHH----hcCCCC----EEEEcCCCccchHHHHH--------------
Q 019543           56 TRDALESLLAKLDKADRALCFTSG-MAALAA-VTH----LLGTGE----EIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~----ll~~GD----~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ...++++.+++++|.+.+-+.++| .+|+.+ ++.    ..++||    .|++++..++.....+.              
T Consensus       543 ~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~  622 (954)
T PRK05367        543 LIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN  622 (954)
T ss_pred             HHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC
Confidence            456888999999999877666655 566632 222    246776    58888776643321111              


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCC--CcCcccCCCeEEEeccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSAT  152 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~--~~~~~~~~~Di~~~S~s  152 (339)
                                                           ++|+++||++|+++++|.++..+.  +.++...|+|++++|++
T Consensus       623 G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~H  702 (954)
T PRK05367        623 GNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLH  702 (954)
T ss_pred             CCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCc
Confidence                                                 899999999999999999996442  23455689999999999


Q ss_pred             cccccC---CCceEEEEEEcChhHHHHHHHHH----Hh---cCCCC-ChH-H------HH--HHHhchhhHHHHHHHHHH
Q 019543          153 KFIAGH---SDVMAGVLAVKGERLAKELYFLQ----NA---EGSGL-APF-D------CW--ICLRGVKTMALRVEKQQD  212 (339)
Q Consensus       153 K~l~g~---~~~~gG~v~~~~~~l~~~l~~~~----~~---~~~~~-~~~-~------a~--~~~~~l~~~~~r~~~~~~  212 (339)
                      |+|+.|   |+.-.|++.+++ .+...+....    ..   .|... +++ .      +|  +...+-+.+.+..++...
T Consensus       703 K~f~~P~G~GGPg~G~l~vr~-~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~  781 (954)
T PRK05367        703 KTFCIPHGGGGPGVGPIGVKA-HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAIL  781 (954)
T ss_pred             ccCCCCcCCCCCceEEEeecc-cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            998754   223356777763 4433332111    00   11111 122 0      11  112233445666666668


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe-eCC--HHHHHHHHccCCcceeecccCCccccee
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGS--LALSKHVVETTKYFSITVSFGSVKSLIS  289 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~-~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~  289 (339)
                      ++.++++.|+..-.   +.|++-.....          ...++.+. +..  ...+..+.++|..+|+....      +.
T Consensus       782 ~A~Yl~~~L~~~~~---~~~~~~~~~~~----------~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t------~~  842 (954)
T PRK05367        782 NANYIAKRLKDHYP---VLYTGANGRVA----------HECILDLRPLKESTGITVDDIAKRLIDYGFHAPT------MS  842 (954)
T ss_pred             HHHHHHHHHHhhcC---ccccCCCCCcc----------cceEEEeecccccCCCCHHHHHHHHHHCCCeEee------cC
Confidence            89999999977532   22322110001          23566553 321  12346678888666654321      11


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .|                  .++.+||+++..+.++.+++|.++++++
T Consensus       843 ~p------------------v~~~l~i~ptE~~s~~elDr~~~al~~i  872 (954)
T PRK05367        843 FP------------------VAGTLMVEPTESESKAELDRFCDAMIAI  872 (954)
T ss_pred             Cc------------------cCCEEEEEeeecCCHHHHHHHHHHHHHH
Confidence            12                  2478999999988888899999988653

>PRK12403 putative aminotransferase; Provisional

Probab=99.20  E-value=1.6e-09  Score=106.21  Aligned_cols=126  Identities=20%  Similarity=0.228  Sum_probs=78.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~----  181 (339)
                      ++|.++|++||+++|+||++. .|-.+..     .....||++  ++|.++|.-..+|+++ ++ +++.+.+....    
T Consensus       246 ~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v-~~-~~i~~~~~~~~~~~~  321 (460)
T PRK12403        246 PEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLV-LS-KRIAEALVEQGGVFA  321 (460)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--EcccccccccceEEEE-EC-HHHHHHHhcCCCccc
Confidence            999999999999999999993 3322221     223458886  8999996311345555 55 35666554211    


Q ss_pred             HhcCCCCChHHHHHHHhchhhHHH--HHHHHH-HHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcce
Q 019543          182 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ-DNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  254 (339)
Q Consensus       182 ~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~-~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~i  254 (339)
                      ...+...+|..++.++..|+.+++  ..++.+ ++.+++.+.|++    ++.+..|                  +|.|.+
T Consensus       322 ~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~  383 (460)
T PRK12403        322 HGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEV------------------QGAGLV  383 (460)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeE------------------eecceE
Confidence            112345788888888887777643  244553 566667666653    3322222                  457788


Q ss_pred             EEEee
Q 019543          255 LSFLT  259 (339)
Q Consensus       255 vs~~~  259 (339)
                      +.+++
T Consensus       384 ~gie~  388 (460)
T PRK12403        384 AALQF  388 (460)
T ss_pred             EEEEE
Confidence            88876

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.20  E-value=1.3e-09  Score=105.73  Aligned_cols=180  Identities=12%  Similarity=0.133  Sum_probs=106.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  187 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~~---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~  187 (339)
                      ++|.++|++||+++|+||++. .|..+...   ..+...-+.|++|.+++ | ...|++++++ ++.+.+.......+..
T Consensus       222 ~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~-G-~pigav~~~~-~i~~~~~~~~~~~T~~  298 (425)
T PRK07495        222 KALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAG-G-FPLAAVTGRA-EIMDAPGPGGLGGTYG  298 (425)
T ss_pred             HHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcC-C-ccceEEEEcH-HHHhccCCCCcCCCCC
Confidence            899999999999999999984 22222221   12222235678999984 3 4567777764 6666554322233456


Q ss_pred             CChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC
Q 019543          188 LAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  261 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~  261 (339)
                      .+|+.++.++..++.+..  ..++.++..+++.+.|+.+    |.+..|                  +|.|.++++++.+
T Consensus       299 ~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v------------------rG~Gl~~~iel~~  360 (425)
T PRK07495        299 GNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADI------------------RGPGFMNAVEFND  360 (425)
T ss_pred             CCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCCCeeee------------------ecCceEEEEEEec
Confidence            678877766666665532  2344445555666655543    322222                  3567888888733


Q ss_pred             H-------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe----ccCCHHHHHHHH
Q 019543          262 L-------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDL  330 (339)
Q Consensus       262 ~-------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv----g~e~~~~li~~l  330 (339)
                      .       ..+..+.+.+...|+.+...+                         ...+.|||..    +.++.++.++.|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-------------------------~~~~~~r~~Ppl~it~~~id~~~~~l  415 (425)
T PRK07495        361 ADSGLPSAEFANRVRLKALEKGLILLTCG-------------------------VHGNVIRFLAPITIQDDVFAEALDIL  415 (425)
T ss_pred             CCCCCccHHHHHHHHHHHHHCCeEEeecC-------------------------CCCCEEEEeCCCccCHHHHHHHHHHH
Confidence            1       224456666666666543100                         1236688884    456677777777


Q ss_pred             HHHHhcC
Q 019543          331 DKALRTG  337 (339)
Q Consensus       331 ~~al~~~  337 (339)
                      .++|+++
T Consensus       416 ~~~l~~~  422 (425)
T PRK07495        416 EASILEA  422 (425)
T ss_pred             HHHHHHH
Confidence            7777653

>PRK06541 hypothetical protein; Provisional

Probab=99.20  E-value=1.6e-09  Score=106.02  Aligned_cols=180  Identities=13%  Similarity=0.119  Sum_probs=107.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---  182 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....|+++  ++|.+++ |....|++++++ ++.+.+.....   
T Consensus       245 ~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~-G~~pigav~~~~-~i~~~~~~~~~~~~  320 (460)
T PRK06541        245 ERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITS-GYSPLGAMIASD-RLFEPFLDGPTMFL  320 (460)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccC-CccceeEEEEcH-HHHHHhhcCCCccc
Confidence            89999999999999999999 56543332     122458764  8999994 221234555554 56555532111   


Q ss_pred             -hcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          183 -AEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       183 -~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                       ..+...+|..+++++..|+.+.  ...++.+++.+++.+.|+++..     +|...          ..+|.|.++.+++
T Consensus       321 ~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-----~~~v~----------~vrg~Gl~~~ie~  385 (460)
T PRK06541        321 HGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-----LPIVG----------DVRGDGYFYGIEL  385 (460)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCCeE----------EEEecceEEEEEE
Confidence             1245667888887777777653  2356666777888888876421     22100          0245788888886


Q ss_pred             C-CH--------HH----H-HHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          260 G-SL--------AL----S-KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       260 ~-~~--------~~----~-~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                      . +.        ..    . ..+.+.+...|+.++..        +                 ...+.|||+.-+..+++
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~--------~-----------------~g~~~lrl~Ppl~~t~~  440 (460)
T PRK06541        386 VKDKATKETFTDDESERLLRGFLSPALFEAGLYCRAD--------D-----------------RGDPVVQLAPPLISGQE  440 (460)
T ss_pred             ecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEec--------C-----------------CCCCEEEEECCCCCCHH
Confidence            2 11        00    1 24555665666654310        0                 02367999988766666


Q ss_pred             HHHHHHHHHh
Q 019543          326 LISDLDKALR  335 (339)
Q Consensus       326 li~~l~~al~  335 (339)
                      .|+.+.++|+
T Consensus       441 ~id~~~~~l~  450 (460)
T PRK06541        441 EFDEIEQILR  450 (460)
T ss_pred             HHHHHHHHHH
Confidence            6666655554

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.20  E-value=1.6e-09  Score=105.06  Aligned_cols=180  Identities=12%  Similarity=0.142  Sum_probs=103.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .|..+...     ....|+  .|++|.+++ | ...|++++++ ++.+.+.......+
T Consensus       222 ~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~-G-~pigav~~~~-~i~~~~~~~~~~~T  296 (421)
T PRK09792        222 AAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLAG-G-MPLSGVVGNA-NIMDAPAPGGLGGT  296 (421)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE--EEeehhhcC-C-CceEEEEEcH-HHHhccCCCCcCCC
Confidence            899999999999999999974 33323221     123474  678999985 3 4456677764 66665543222234


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-  262 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-  262 (339)
                      ..-+|+.+++++..++.+..  ..++.++..+++.+.|+.+..    .+|...          ..+|.|.++++++.+. 
T Consensus       297 ~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~----~~p~v~----------~vrG~Gl~~~ie~~~~~  362 (421)
T PRK09792        297 YAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKE----SVPAIA----------AVRGLGSMIAAEFNDPQ  362 (421)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----hCCCcc----------eecccceEEEEEecCCc
Confidence            45677777666555554422  233334445555555543210    012110          0246788999988432 


Q ss_pred             ------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          263 ------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       263 ------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                            ..+.++.+.+...|+.+.          +.               |...+.|||...+..+++.++.+.++|+
T Consensus       363 ~~~~~~~~~~~l~~~~~~~Gv~i~----------~~---------------g~~~~~irl~P~l~i~~~ei~~~~~~l~  416 (421)
T PRK09792        363 TGEPSAAIAQKIQQRALAQGLLLL----------TC---------------GAYGNVIRFLYPLTIPDAQFDAAMKILQ  416 (421)
T ss_pred             cCCcchHHHHHHHHHHHHCCcEEe----------ec---------------CCCCCEEEEeCCCcCCHHHHHHHHHHHH
Confidence                  235567766666666542          10               0123679999777555555555544443

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.19  E-value=4e-10  Score=116.01  Aligned_cols=245  Identities=18%  Similarity=0.192  Sum_probs=137.9

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcC-cHHHHHHH-HHHh----cCC----CCEEEEcCCCccchHH----------------
Q 019543           55 PTRDALESLLAKLDKADRALCFT-SGMAALAA-VTHL----LGT----GEEIVAGDDLYGGTDR----------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~-sG~~A~~~-il~l----l~~----GD~Vi~~~~~y~~~~~----------------  108 (339)
                      ....+||+.++++.|.+.+-+.+ ||.+|..+ ++++    ..+    .++|+++...++.+..                
T Consensus       543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~  622 (954)
T PRK12566        543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDP  622 (954)
T ss_pred             HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCC
Confidence            46789999999999999887777 77777743 3332    222    3567777655522211                


Q ss_pred             -----------HHH------------------------HHHHHHHHHcCCEEEEeCCcCCCC--CcCcccCCCeEEEecc
Q 019543          109 -----------LLS------------------------RKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSA  151 (339)
Q Consensus       109 -----------~~~------------------------~~I~~la~~~g~~livD~a~a~g~--~~~~~~~~~Di~~~S~  151 (339)
                                 .+.                        ++|+++||++|+++++|.++..+.  ...+.+.|+||+++++
T Consensus       623 ~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~  702 (954)
T PRK12566        623 DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNL  702 (954)
T ss_pred             CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecC
Confidence                       110                        889999999999999999996433  2345678999999999


Q ss_pred             ccccccCCC---ceEEEEEEcChhHHHHHHHHH--Hh------cCCC-CChHHH----HHHHhchhh----HHHHHHHHH
Q 019543          152 TKFIAGHSD---VMAGVLAVKGERLAKELYFLQ--NA------EGSG-LAPFDC----WICLRGVKT----MALRVEKQQ  211 (339)
Q Consensus       152 sK~l~g~~~---~~gG~v~~~~~~l~~~l~~~~--~~------~~~~-~~~~~a----~~~~~~l~~----~~~r~~~~~  211 (339)
                      +|+|++|-+   ...|.+.++ +.+...++.+.  ..      .++. ..+..+    ..+..-+..    +.+..+...
T Consensus       703 HKtf~~P~G~GGP~vG~iav~-~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ai  781 (954)
T PRK12566        703 HKTFCIPHGGGGPGMGPIGVR-AHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQLADASEVAI  781 (954)
T ss_pred             CcccCcCccCCCCccchhhhh-hhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            999986632   223333333 23434444321  00      1111 011111    111111122    221122224


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe-eCCH--HHHHHHHccCCcceeecccCCcccce
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSL--ALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~-~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      .|+.++++.|+...++.   |.+  .++.       +- ...++.+. +.+.  ..+..+.++|..+|+....      .
T Consensus       782 lnAnYla~rL~~~~~v~---~~~--~~~~-------~~-hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt------~  842 (954)
T PRK12566        782 LSANYLANQLGGAFPVL---YRG--RNER-------VA-HECILDLRPLKAQTGISEEDVAKRLMDYGFHAPT------M  842 (954)
T ss_pred             HHHHHHHHHhHhhCCCC---cCC--CCCC-------ee-eEEEEEccccccccCCCHHHHHHHHHHCCcEEeE------E
Confidence            68888999887643321   211  0000       00 11223322 3211  2235577777666664221      1


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .+|                  .++.+||+++..+.++.||+|.++|+++
T Consensus       843 ~fP------------------v~~~LmIepTE~eskeEIDrf~eAL~~I  873 (954)
T PRK12566        843 SFP------------------VPGTLMVEPTESESKAELDRFVEAMLSI  873 (954)
T ss_pred             eec------------------cCCEEEEEeeeeCCHHHHHHHHHHHHHH
Confidence            122                  2478999999999999999999998753

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.19  E-value=2.8e-09  Score=104.00  Aligned_cols=177  Identities=16%  Similarity=0.168  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH------
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------  179 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~------  179 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....|++  +++|.+++.. .-.|.+++++ ++.+.+..      
T Consensus       242 ~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~--~~gK~l~gG~-~Pi~av~~~~-~i~~~~~~~~~~~~  317 (445)
T PRK09221        242 QRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDII--TFAKGLTNGA-IPMGAVIASD-EIYDAFMQGPEYAI  317 (445)
T ss_pred             HHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEE--EeccccccCc-ccceeeEEcH-HHHHhhccCccccc
Confidence            99999999999999999998 44432222     12234765  5799998531 2134555653 56665532      


Q ss_pred             -HHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          180 -LQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       180 -~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                       +...++...+|+.++.++..|+.+.  ...++.++..+++.+.|+++..     +|.+.          ..+|.|.+..
T Consensus       318 ~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v~----------~vrg~Gl~~~  382 (445)
T PRK09221        318 EFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKG-----LPHVI----------DIRNIGLVAG  382 (445)
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcc-----CCCEE----------EEecCceEEE
Confidence             1112344567887777777776653  2355666777778887776522     22110          0144566666


Q ss_pred             EeeCC-----HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHH
Q 019543          257 FLTGS-----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  331 (339)
Q Consensus       257 ~~~~~-----~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~  331 (339)
                      +.+.+     ...+.++.+.+.+.|+.++.                            ..+.|||+.-+..+++.|+.+.
T Consensus       383 v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~----------------------------~~~~lr~~Ppl~~t~~eid~~~  434 (445)
T PRK09221        383 IELAPRPGAPGARGYEAFMKCFEKGLLVRY----------------------------TGDTIALSPPLIIEKAQIDELV  434 (445)
T ss_pred             EEEecccccccchHHHHHHHHHHCCeEEee----------------------------cCCEEEEECCccCCHHHHHHHH
Confidence            66532     12345666777666665431                            1246899876655555555554


Q ss_pred             HHHh
Q 019543          332 KALR  335 (339)
Q Consensus       332 ~al~  335 (339)
                      ++|+
T Consensus       435 ~~l~  438 (445)
T PRK09221        435 DALG  438 (445)
T ss_pred             HHHH
Confidence            4443

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.19  E-value=3e-09  Score=103.87  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=103.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|.||++. .|-.+..     .....|+++.  +|.+++ | ...|++++++ ++.+.+.......+
T Consensus       243 ~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~-G-~Pi~av~~~~-~i~~~~~~~~~~~T  317 (443)
T PRK06058        243 PALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAG-G-LPLSAVTGRA-EIMDAPHPGGLGGT  317 (443)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEE--cccccC-C-CccEEEEEcH-HHHhhccCCCCCCC
Confidence            899999999999999999984 3322211     1233487764  799985 3 4456666664 56665543222234


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+++    +.+..                  .+|.|.++.+++
T Consensus       318 ~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrg~G~~~~i~~  379 (443)
T PRK06058        318 YGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGD------------------VRGRGAMIAIEL  379 (443)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEe------------------eeccceEEEEEE
Confidence            56678887777777776532  2344445566666666543    22211                  145678888876


Q ss_pred             C-C------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHH
Q 019543          260 G-S------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK  332 (339)
Q Consensus       260 ~-~------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~  332 (339)
                      . +      .+.+.++.+.+.+.|+.+..++.                         ..+.||+..-+..+++.|+.+.+
T Consensus       380 ~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~-------------------------~~~~lr~~Ppl~~t~~~i~~~~~  434 (443)
T PRK06058        380 VKPGTTEPDAELTKALAAAAHAAGVIVLTCGT-------------------------YGNVIRLLPPLVIGDELLREGLD  434 (443)
T ss_pred             ecCCCCCCcHHHHHHHHHHHHHCCeEEeccCC-------------------------CCCEEEEECCCccCHHHHHHHHH
Confidence            2 2      22355677777666766542210                         12568887666555555554444


Q ss_pred             HHh
Q 019543          333 ALR  335 (339)
Q Consensus       333 al~  335 (339)
                      +|+
T Consensus       435 ~l~  437 (443)
T PRK06058        435 VLE  437 (443)
T ss_pred             HHH
Confidence            443

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.19  E-value=2.3e-09  Score=112.12  Aligned_cols=228  Identities=17%  Similarity=0.158  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHHh-cCCC--CEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHL-LGTG--EEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~l-l~~G--D~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ...+++..++++.|.+  ++-++.+++++..+ +++. +++|  |+|++++..|+.+...++                  
T Consensus       149 al~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~  228 (993)
T PLN02414        149 SLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF  228 (993)
T ss_pred             HHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh
Confidence            3567888899999975  57788888887764 3342 4544  889999988887654432                  


Q ss_pred             ------------------------HHHHHHHHHcCCEEEEeCCcCCCC--CcCcccCCCeEEEecccccc-----ccCCC
Q 019543          112 ------------------------RKIAEMAHAHGALLLVDNSIMSPV--LSRPLELGADIVMHSATKFI-----AGHSD  160 (339)
Q Consensus       112 ------------------------~~I~~la~~~g~~livD~a~a~g~--~~~~~~~~~Di~~~S~sK~l-----~g~~~  160 (339)
                                              ++|+++||++|+++++ .++..+.  ..++-++|+||++++.+|+.     |||  
T Consensus       229 ~~~~~~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP--  305 (993)
T PLN02414        229 DYSSGDVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGP--  305 (993)
T ss_pred             ccccCceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCC--
Confidence                                    8999999999999999 6665442  23455789999999999997     433  


Q ss_pred             ceEEEEEEcChhHHHHHHH-HH---------Hh-------------cCCCCChHHHHHH-Hhch----------hhHHHH
Q 019543          161 VMAGVLAVKGERLAKELYF-LQ---------NA-------------EGSGLAPFDCWIC-LRGV----------KTMALR  206 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~-~~---------~~-------------~~~~~~~~~a~~~-~~~l----------~~~~~r  206 (339)
                       ..|++++++ ++.+.+.. +.         +.             +-.+.+.+..+.+ ...+          .-+...
T Consensus       306 -~aGflavr~-~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~I  383 (993)
T PLN02414        306 -HAAFLATSQ-EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI  383 (993)
T ss_pred             -CeeEEEECH-HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHH
Confidence             268999876 44332210 00         00             0011112211111 1111          112222


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .++..+.+.++++.|+.. +++.+ .|     +           ...++.|.+++.   .++.++|...||.++.     
T Consensus       384 a~ri~~la~~l~~~L~~~-G~~~~-~~-----~-----------~f~~vt~~~~~~---~~v~~~L~~~gI~l~~-----  437 (993)
T PLN02414        384 AQRVHGLAGVFAAGLKKL-GFQVQ-SL-----P-----------FFDTVKVKCSDA---DAIADAAAKVGINLRV-----  437 (993)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCccC-CC-----C-----------CcCeEEEecCCH---HHHHHHHHHCCCeeEE-----
Confidence            345566788888888763 44321 11     1           345888887533   4567777666663331     


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                            +.++.||+|+...++++.|+.|.++|..
T Consensus       438 ----------------------~~~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        438 ----------------------VDANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             ----------------------ecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence                                  1235699999999999999999999964

>PRK15029 arginine decarboxylase; Provisional

Probab=99.17  E-value=9e-10  Score=112.25  Aligned_cols=169  Identities=12%  Similarity=0.092  Sum_probs=111.9

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccchH-------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTD-------------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~~-------------------------  107 (339)
                      ....+.|+..|++||++++.+..+| +.+|.+ +++++++||.|+++++.+-...                         
T Consensus       205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~  284 (755)
T PRK15029        205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGP  284 (755)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccC
Confidence            4678999999999999999988888 567765 5568999999999876321111                         


Q ss_pred             ------------HHHH------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-------C
Q 019543          108 ------------RLLS------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-------R  138 (339)
Q Consensus       108 ------------~~~~------------------------------~~I~~la~~~g~~livD~a~a~g~~~-------~  138 (339)
                                  ..+.                              ++|+++|+++|++|+|||||+....+       .
T Consensus       285 i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~s  364 (755)
T PRK15029        285 IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHY  364 (755)
T ss_pred             CCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccc
Confidence                        0110                              89999999999999999999864311       2


Q ss_pred             cc-----c-CCCe-EEEeccccccccCCCceEEEEEEcChh-H--HHHHHHHHHhcC-CCCCh-HHHH--HHHhchhh--
Q 019543          139 PL-----E-LGAD-IVMHSATKFIAGHSDVMAGVLAVKGER-L--AKELYFLQNAEG-SGLAP-FDCW--ICLRGVKT--  202 (339)
Q Consensus       139 ~~-----~-~~~D-i~~~S~sK~l~g~~~~~gG~v~~~~~~-l--~~~l~~~~~~~~-~~~~~-~~a~--~~~~~l~~--  202 (339)
                      ++     . .|+| +++.|.+|.+++.  .++.++..++.. .  .++++....++. ++.+- +.|.  .+.+.++.  
T Consensus       365 a~~~~~~~~~Gad~~vvqStHKtL~al--TQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~  442 (755)
T PRK15029        365 AMRGEPGDHNGPTVFATHSTHKLLNAL--SQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNS  442 (755)
T ss_pred             cccccccccCCCceEEEEchhhcccch--hhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            22     2 5788 9999999999954  577888875531 1  245555544443 33222 2221  12222332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC
Q 019543          203 MALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       203 ~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      -...+++..+.+..+++.+++.+
T Consensus       443 G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        443 GLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcc
Confidence            23335555666777777776654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.17  E-value=7.9e-10  Score=104.94  Aligned_cols=227  Identities=16%  Similarity=0.194  Sum_probs=138.7

Q ss_pred             CCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh--cCCC-CEEEEcCCCccchH--------------------
Q 019543           51 RSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTG-EEIVAGDDLYGGTD--------------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l--l~~G-D~Vi~~~~~y~~~~--------------------  107 (339)
                      ...++...+|+++|+++.+.+.++.++||++|+.+.+.+  ..+| ++|++.+..|+|..                    
T Consensus        62 ~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~  141 (364)
T PRK04013         62 MFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLV  141 (364)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCC
Confidence            345778899999999998888999999999999754432  2244 89988877666531                    


Q ss_pred             -----------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC---CCCCc--CcccC
Q 019543          108 -----------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM---SPVLS--RPLEL  142 (339)
Q Consensus       108 -----------~~~~-----------------------------~~I~~la~~~g~~livD~a~a---~g~~~--~~~~~  142 (339)
                                 ..++                             ++|.++|++||+++|+||++.   +|..+  .....
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv  221 (364)
T PRK04013        142 PGFKHIPFNDVEAAKEAITKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKV  221 (364)
T ss_pred             CCcEEecCCCHHHHHHHhcCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCC
Confidence                       0000                             899999999999999999985   22211  11233


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHh
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      ..|+++  ++|.+++.  ...|.++.+. ++.    ......+..-+|..+++++..|+.+++.  ...++++...+.+.
T Consensus       222 ~PDiv~--~gK~lggG--~P~~a~~~~~-~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~--~l~~~~~~~l~~l~  290 (364)
T PRK04013        222 EPDIVT--MGKGIGNG--VPVSLTLTNF-DVE----RGKHGSTFGGNPLACKAVAVTLRILRRE--RLVEKAGEKFIEIK  290 (364)
T ss_pred             CCCEEE--ecccccCC--ceeEEEEecc-ccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHhc
Confidence            457766  59999963  3345555554 331    1111234566888888888777776432  12222222212221


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      . +.|..                  .+|.|.++.+++.+.  +..+.+.+...|+.+...                    
T Consensus       291 ~-~~v~~------------------vRG~Gl~~gve~~~~--~~~i~~~~~~~Gll~~~~--------------------  329 (364)
T PRK04013        291 G-ERVVT------------------TRGRGLMIGIVLKKP--VGKYVEELQNRGYLVHTA--------------------  329 (364)
T ss_pred             c-Cccee------------------eeeCcEEEEEEeCCc--HHHHHHHHHhCCcEEeeC--------------------
Confidence            1 21111                  256788999998543  345666665556543211                    


Q ss_pred             HHHhCCCCCCeEEEEec----cCCHHHHHHHHHHHHhc
Q 019543          303 VRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  336 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg----~e~~~~li~~l~~al~~  336 (339)
                             ..+.|||..-    .++.++.++.|.++|++
T Consensus       330 -------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~  360 (364)
T PRK04013        330 -------GQRVIRLLPPLIISKDTMEEAKSAIEGVIND  360 (364)
T ss_pred             -------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHH
Confidence                   1245777664    45566667777777654

>PLN02880 tyrosine decarboxylase

Probab=99.16  E-value=5.4e-09  Score=103.03  Aligned_cols=130  Identities=18%  Similarity=0.227  Sum_probs=86.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC-----ccc--CCCeEEEeccccccccCCCceEEEEEEcChhH-HHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSR-----PLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~-----~~~--~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l-~~~l~~~~~~  183 (339)
                      ++|+++|++||+++.||+||+.+....     .+.  .++|.++.+++|++..|  ...|+++.++... .+.+..-..+
T Consensus       259 ~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P--~~~g~llvr~~~~l~~~~~~~~~Y  336 (490)
T PLN02880        259 LELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN--FDCSLLWVKDRNALIQSLSTNPEF  336 (490)
T ss_pred             HHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC--ccEEEEEEeCHHHHHHHHccCHHH
Confidence            999999999999999999998764422     122  26799999999999866  4467888775322 1211110111


Q ss_pred             c--------------------CCCCChHHHHHH--HhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCch
Q 019543          184 E--------------------GSGLAPFDCWIC--LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  241 (339)
Q Consensus       184 ~--------------------~~~~~~~~a~~~--~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~  241 (339)
                      .                    |-....+..|..  ..+.+.+.+++++..+.++++.+.+++.++++.+.-|        
T Consensus       337 l~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~--------  408 (490)
T PLN02880        337 LKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR--------  408 (490)
T ss_pred             hcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC--------
Confidence            0                    000112233333  2356778888888889999999999999887755433        


Q ss_pred             HhHhhhcCCCcceEEEeeC
Q 019543          242 ELHYSQAKGAGSVLSFLTG  260 (339)
Q Consensus       242 ~~~~~~~~~~~~ivs~~~~  260 (339)
                               ..+++.|.+.
T Consensus       409 ---------~~~iv~Fr~~  418 (490)
T PLN02880        409 ---------IFSLVCFRLV  418 (490)
T ss_pred             ---------ceEEEEEEEe
Confidence                     3568888864

>PRK06105 aminotransferase; Provisional

Probab=99.16  E-value=3.2e-09  Score=104.03  Aligned_cols=178  Identities=11%  Similarity=0.124  Sum_probs=108.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~----  181 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....||+  +++|.++|.. .-.|++++++ ++.+.+....    
T Consensus       242 ~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~--~~gK~lggG~-~P~~av~~~~-~i~~~~~~~~~~~~  317 (460)
T PRK06105        242 EKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDIL--VMSKQLSSSY-QPLSAVLMNE-KVYDPIADESGKIG  317 (460)
T ss_pred             HHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCee--eeecccccCc-ccceEEEEcH-HHHHHHhcccccCc
Confidence            99999999999999999998 55543322     12345766  5799998631 2356666664 6666554311    


Q ss_pred             ---HhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          182 ---NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       182 ---~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                         ..++...+|+.++.++..|+.+.+  ..++.++..+++.+.|+++..     +|...          ..+|.|.++.
T Consensus       318 ~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~-----~~~v~----------~vrG~Gl~~g  382 (460)
T PRK06105        318 TFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALAD-----HPLVG----------EVRGVGLIAA  382 (460)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCCeE----------EEEecceEEE
Confidence               123456788888888777777643  356666677777777765421     22110          0245778888


Q ss_pred             EeeCCH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec----cC
Q 019543          257 FLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IE  321 (339)
Q Consensus       257 ~~~~~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg----~e  321 (339)
                      |++...           ..+.++...+...|+.+.          |                  ..+.+|++.-    .+
T Consensus       383 ie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~----------~------------------~g~~i~l~Ppl~it~~  434 (460)
T PRK06105        383 VELVADKATKTPFEPPGKVGARANAAAHEHGVISR----------A------------------MGDTLAFCPPLIITAA  434 (460)
T ss_pred             EEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEE----------e------------------cCCEEEEECCCccCHH
Confidence            876211           123456666655555432          1                  1146777754    45


Q ss_pred             CHHHHHHHHHHHHhc
Q 019543          322 DVNDLISDLDKALRT  336 (339)
Q Consensus       322 ~~~~li~~l~~al~~  336 (339)
                      +.+..++.|.++|++
T Consensus       435 eid~~~~~l~~~l~~  449 (460)
T PRK06105        435 QVDEMVDRFGRALDD  449 (460)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            566666777776654

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.16  E-value=3.8e-09  Score=103.41  Aligned_cols=146  Identities=11%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc---cCC--CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRPL---ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~~---~~~--~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .+..+...   ..+  .|+  .|+||.+++ | ...|++++++ ++.+.+.......+
T Consensus       243 ~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi--~t~sK~l~~-G-~pig~v~~~~-~i~~~~~~~~~~~T  317 (451)
T PRK06918        243 QEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDL--ITVSKSLGA-G-VPISGVIGRK-EIMDESAPGELGGT  317 (451)
T ss_pred             HHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCE--EeeehhhcC-C-CccEEEEEcH-HHHhccCCCCcCcC
Confidence            899999999999999999974 33222211   122  574  479999994 4 4556777764 56665543222234


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|+..+++...++.+.  ...++.++..+++.+.|+.    ++.+..+                  ++.|.++.+.+
T Consensus       318 ~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~v------------------rg~G~~~~~~~  379 (451)
T PRK06918        318 YAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDV------------------RGLGAMCAFEL  379 (451)
T ss_pred             CCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCCCceee------------------ccceeEEEEEE
Confidence            5567777666555555441  1122233334445555443    2221111                  34567777665


Q ss_pred             C--------CHHHHHHHHccCCcceeecc
Q 019543          260 G--------SLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       260 ~--------~~~~~~~~~~~L~~~~i~v~  280 (339)
                      .        +.+.+.++.+.+...|+.+.
T Consensus       380 ~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~  408 (451)
T PRK06918        380 VQDRKTKEPDKTLTANICKEANKRGLLLL  408 (451)
T ss_pred             ccCCCcCCCcHHHHHHHHHHHHHCCeEEe
Confidence            2        22345667777767677554

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.15  E-value=1.8e-09  Score=95.00  Aligned_cols=174  Identities=21%  Similarity=0.196  Sum_probs=119.9

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchHH------------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDR------------------------  108 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~~------------------------  108 (339)
                      .|-...+-+.|+++.|.+.+-++++.-.|-++++. +.++||.|+++.+.+..++-                        
T Consensus        60 kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~  139 (382)
T COG1103          60 KPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITP  139 (382)
T ss_pred             CCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecH
Confidence            35555555559999999888888887888887664 89999999998764332221                        


Q ss_pred             -----HHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccc
Q 019543          109 -----LLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKF  154 (339)
Q Consensus       109 -----~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~  154 (339)
                           .+.                            +.++++|+++|+++++..|+..|-. .+..+.++|++++|.+|+
T Consensus       140 e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKs  219 (382)
T COG1103         140 EGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKS  219 (382)
T ss_pred             HHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccc
Confidence                 111                            8999999999999999999988754 344567999999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHH-H--------hcCCCCChHHHHHHHhchhhHHHHHHHH---HHHHHHHHHHHh
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQ-N--------AEGSGLAPFDCWICLRGVKTMALRVEKQ---QDNAQKIAEFLA  222 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~-~--------~~~~~~~~~~a~~~~~~l~~~~~r~~~~---~~~a~~l~~~L~  222 (339)
                      ++..+  -.|++..+ +++.+.+.+.. +        ++|++.--+....+..++....+|+++.   .++++.+.+.|+
T Consensus       220 mAAs~--PiGvl~~~-eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elE  296 (382)
T COG1103         220 MAASA--PIGVLAMS-EEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELE  296 (382)
T ss_pred             hhccC--CeeEEeeh-hHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98544  35788776 46777665432 1        2343322111222334455555555543   467888888888


Q ss_pred             CCCCceEE
Q 019543          223 SHPRVKKV  230 (339)
Q Consensus       223 ~~~~i~~v  230 (339)
                      .+.++..+
T Consensus       297 kigg~~ql  304 (382)
T COG1103         297 KIGGVKQL  304 (382)
T ss_pred             HhhhHHHh
Confidence            88776543

>PLN03032 serine decarboxylase; Provisional

Probab=99.14  E-value=9.2e-09  Score=97.77  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCC--eE--EEcCcHHHHHHH-HHH--hcCCCCEEEEcCCCccchHHHHH----------
Q 019543           49 YTRSGNPTRDALESLLAKLDKAD--RA--LCFTSGMAALAA-VTH--LLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~--~~--l~~~sG~~A~~~-il~--ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      |++.....-+++.+.+++++|.+  ++  +++++||.||.. +..  -..++++|+++...+.......+          
T Consensus        60 ~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~  139 (374)
T PLN03032         60 YGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVP  139 (374)
T ss_pred             CCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEee
Confidence            33333445567777888899864  33  777888999864 332  12356788887665443332211          


Q ss_pred             -----------------------------------------HHHHHHHHHcC-----CEEEEeCCcCCCCCc-----C--
Q 019543          112 -----------------------------------------RKIAEMAHAHG-----ALLLVDNSIMSPVLS-----R--  138 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g-----~~livD~a~a~g~~~-----~--  138 (339)
                                                               ++|+++|++||     +++.+|.|++.+...     .  
T Consensus       140 ~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~  219 (374)
T PLN03032        140 TLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEV  219 (374)
T ss_pred             eCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCccc
Confidence                                                     99999999997     489999999765431     0  


Q ss_pred             cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--------cCCC--CChHHHHHHH--hchhhHHHH
Q 019543          139 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSG--LAPFDCWICL--RGVKTMALR  206 (339)
Q Consensus       139 ~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------~~~~--~~~~~a~~~~--~~l~~~~~r  206 (339)
                      ....++|.++.|.+|+++.|-  ..|+++.++ ...+.+.....+        .|..  ...+..|..+  .+.+.+.++
T Consensus       220 ~~~~~vDSis~s~HK~~g~P~--g~G~ll~r~-~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~  296 (374)
T PLN03032        220 TFRKPIGSVSVSGHKFLGCPM--PCGVALTRK-KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRD  296 (374)
T ss_pred             CCCcCCcEEEECcccccCCCc--CeEEEEEEc-hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHH
Confidence            112368999999999988553  357787776 344433211111        1222  1233444443  345677888


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      .++..++++++.+.|++. ++..+..|
T Consensus       297 ~~~~~~~a~~l~~~l~~~-~~~~~~~p  322 (374)
T PLN03032        297 VQHCMRNAHYLKDRLTEA-GLTCRLNE  322 (374)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCcEEECC
Confidence            999999999999999886 44444444

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.13  E-value=4.7e-09  Score=101.52  Aligned_cols=178  Identities=13%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCc-----CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~-----~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .|-.+     .......|+++  ++|++++.| ...|++++++ ++ +.+.......+
T Consensus       218 ~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G-~pigav~~~~-~~-~~~~~~~~~~T  292 (412)
T TIGR02407       218 QRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYG-LPLALTLIKP-EL-DVWKPGEHNGT  292 (412)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEE--echhccCCc-cceeEEEEch-hh-hccCCCccCCC
Confidence            899999999999999999984 33211     11233558764  689998634 4456777764 33 33321111123


Q ss_pred             CCCChHHHHHHHhchhh-HH--HHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          186 SGLAPFDCWICLRGVKT-MA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~-~~--~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      ..-+|+.++.+...++. +.  ...++..+..+++.+.|+.    ++.+. ..                .++.|.+++++
T Consensus       293 ~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~----------------vrg~Gl~~~l~  355 (412)
T TIGR02407       293 FRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELI-KQ----------------VRGRGLMQGIE  355 (412)
T ss_pred             CCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCce-Ee----------------eecceeEEEEE
Confidence            34466655555555553 21  1233334444555555543    33210 11                14568899999


Q ss_pred             eCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+.+.+.++.+.+...|+.+...+                         ...+.|||+..+..+++.++.+.++|++
T Consensus       356 l~~~~~~~~~~~~~~~~Gv~v~~~~-------------------------~~~~~lr~~p~l~~t~~~i~~~~~~l~~  408 (412)
T TIGR02407       356 CGDGDLAGKIAKAAFENGLIIETSG-------------------------PNDEVIKLLPPLTIDEETLQQGLDILEQ  408 (412)
T ss_pred             ecChHHHHHHHHHHHHCCCEEeccC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9766666788888877777654211                         1236799999988888777777777654

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.12  E-value=7.1e-09  Score=99.47  Aligned_cols=180  Identities=15%  Similarity=0.222  Sum_probs=107.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-C---CCCc--CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-S---PVLS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~---g~~~--~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      +++.++|++||+++|+||++. .   |.+.  .......||++  ++|.+++ | .-.|.++.++ ++.+ ...-....+
T Consensus       246 ~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G-~Pl~avv~r~-ei~~-~~~g~~~~T  319 (447)
T COG0160         246 KALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-G-LPLSAVVGRA-EIMD-WPPGGHGGT  319 (447)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-C-CceeEEeccH-Hhcc-cCCcccCCC
Confidence            999999999999999999993 2   3221  11222458876  6899996 3 4456666664 5544 221111233


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CC-
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GS-  261 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~-  261 (339)
                      ..=+|..++.++..|+.+++  ..++..+.-+++.+.|.++..    .||.+.+          .+|.|-++-+++ .+ 
T Consensus       320 f~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~----~~~~Igd----------VRG~Glm~giE~v~d~  385 (447)
T COG0160         320 FGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQE----KHPLIGD----------VRGLGLMIGVELVKDR  385 (447)
T ss_pred             CCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHh----hcCceec----------ccccceEEEEEEecCC
Confidence            55578888888877776543  334444455566666654321    1221110          256788888875 22 


Q ss_pred             ------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHH
Q 019543          262 ------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLD  331 (339)
Q Consensus       262 ------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~  331 (339)
                            .+.+.++++.+.+.|+.+.         .+                |...+.|||..=+    |+.+..++.|.
T Consensus       386 ~t~~p~~~~~~~i~~~~~~~Glil~---------~~----------------G~~~nviRi~PPL~is~e~~d~~l~il~  440 (447)
T COG0160         386 DTKEPDAELAAKIVARAFERGLLLL---------TC----------------GPHGNVLRILPPLTISDEELDEGLDILE  440 (447)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEe---------cc----------------CCCCcEEEEeCCcccCHHHHHHHHHHHH
Confidence                  2456778887777665432         11                1234678887755    55566666666


Q ss_pred             HHHhc
Q 019543          332 KALRT  336 (339)
Q Consensus       332 ~al~~  336 (339)
                      ++|++
T Consensus       441 ~al~~  445 (447)
T COG0160         441 EALKE  445 (447)
T ss_pred             HHHHh
Confidence            66654

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.12  E-value=6.5e-09  Score=101.79  Aligned_cols=193  Identities=17%  Similarity=0.210  Sum_probs=115.5

Q ss_pred             cCCCCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhc---CCCCEEEEcCCCccch------------------
Q 019543           50 TRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLL---GTGEEIVAGDDLYGGT------------------  106 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll---~~GD~Vi~~~~~y~~~------------------  106 (339)
                      ++..++...+|+++|+++.+.  +.+.+++||++|+.+.+.+.   ....+|++-...|+|.                  
T Consensus       108 ~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~  187 (459)
T PRK06082        108 RRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMG  187 (459)
T ss_pred             CccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCC
Confidence            345677788999999998853  57888899999997544332   2335565533333221                  


Q ss_pred             ---------------------------------HHHHH--------------------------HHHHHHHHHcCCEEEE
Q 019543          107 ---------------------------------DRLLS--------------------------RKIAEMAHAHGALLLV  127 (339)
Q Consensus       107 ---------------------------------~~~~~--------------------------~~I~~la~~~g~~liv  127 (339)
                                                       ...+.                          ++|.++|++||+++|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~  267 (459)
T PRK06082        188 PLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLII  267 (459)
T ss_pred             CCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence                                             01110                          8999999999999999


Q ss_pred             eCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh
Q 019543          128 DNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK  201 (339)
Q Consensus       128 D~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~  201 (339)
                      ||++. .|-.+..     .....||++  ++|.+++..-.+ |.+++++ ++.+........++...+|+.+++++..|+
T Consensus       268 DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P~-~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  343 (459)
T PRK06082        268 DEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVPI-AAMITKD-KYNTAAQISLGHYTHEKSPLGCAAALATIE  343 (459)
T ss_pred             echhhCCCccchhhHhHhhCCCCCEEE--ecccccCCCCcc-eEEEEcH-HHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99984 2222221     223458886  799999632123 4555554 443322110012355678888887777777


Q ss_pred             hHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC
Q 019543          202 TMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  260 (339)
Q Consensus       202 ~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~  260 (339)
                      .+.  ...++.++..+++.+.|+.+..    .+|...          ..+|.|.++.+++.
T Consensus       344 ~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~i~----------~vrG~Gl~~~ve~~  390 (459)
T PRK06082        344 VIEQEGLLEKVKADSQFMRERLLEMKA----KYPLIG----------DVRGIGLLWGVELV  390 (459)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHh----hCCCee----------eeeeccceeEEEEc
Confidence            663  2355566667777777765311    011100          02467888888873

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.11  E-value=1e-08  Score=100.13  Aligned_cols=175  Identities=14%  Similarity=0.145  Sum_probs=101.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|.||++. .|-.+..     .....|+++  ++|.+++ |.. .|++++++ ++ +.+.......+
T Consensus       230 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~P-igav~~~~-~~-~~~~~~~~~~T  303 (442)
T TIGR00709       230 QKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GLP-LAVLLIAP-EF-DAWQPAGHTGT  303 (442)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-Ccc-cEEEEEch-HH-hccCCCcCCCC
Confidence            999999999999999999973 3332221     223458887  7999997 444 45666664 33 33221111123


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ..-+|+.+++++..|+.+++  ..++.++..+++.+.|++    +|.|..                  .+|.|.++.+++
T Consensus       304 ~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrG~Gl~~~ie~  365 (442)
T TIGR00709       304 FRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGN------------------VRGRGLMQGIMI  365 (442)
T ss_pred             CCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eeccceEEEEEE
Confidence            45678887777777766532  234444555666666654    232221                  246788888887


Q ss_pred             CCH--------------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          260 GSL--------------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       260 ~~~--------------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                      .+.              +.+.++...+...|+.+...+                         ...+.||+..-+..+++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-------------------------~~~~~l~~~Ppl~it~~  420 (442)
T TIGR00709       366 VDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGG-------------------------REGEVFRLLCPITIDQE  420 (442)
T ss_pred             ccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecC-------------------------CCCCEEEEECCCCCCHH
Confidence            321              123456655555565443111                         12367888887766665


Q ss_pred             HHHHHHHHHh
Q 019543          326 LISDLDKALR  335 (339)
Q Consensus       326 li~~l~~al~  335 (339)
                      .++.+.++|+
T Consensus       421 ei~~~~~~l~  430 (442)
T TIGR00709       421 ECEEGISRFK  430 (442)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.11  E-value=9.2e-09  Score=100.63  Aligned_cols=175  Identities=11%  Similarity=0.100  Sum_probs=106.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .|-.+..     .....|+++  ++|.+++.  .-.|++++++ ++.+.. .-...++
T Consensus       246 ~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG--~pi~av~~~~-~i~~~~-~~~~~~T  319 (457)
T PRK05639        246 KELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASG--MGLSGVIGRK-ELMDLT-SGSALLT  319 (457)
T ss_pred             HHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCC--CcceeEEehH-HHHhhc-CCCcccC
Confidence            999999999999999999984 2222221     223468888  79999853  2235666664 565521 1111234


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ...+|..+++++..|+.+..  ..++.++..+++.+.|++    ++.+..                  .+|.|.++.+.+
T Consensus       320 ~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~------------------VrG~Gl~~gve~  381 (457)
T PRK05639        320 PAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGD------------------VRGKGLMIGVEI  381 (457)
T ss_pred             CCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEe------------------eccceeEEEEEE
Confidence            56788887777777776532  234445566677776654    222211                  246778888876


Q ss_pred             CC------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHH
Q 019543          260 GS------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKA  333 (339)
Q Consensus       260 ~~------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~a  333 (339)
                      ..      ...+..+.+.+...|+.+...                         |...+.|||+.-+..+++.++.+.++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-------------------------g~~~~~lr~~Ppl~it~~~id~~~~~  436 (457)
T PRK05639        382 VKENGKPDPELTGKICWRAFELGLILPSY-------------------------GMFGNVIRITPPLVITKEIAEKGLEI  436 (457)
T ss_pred             ecCCCCCCHHHHHHHHHHHHhCCeEEeec-------------------------CCCCCEEEEeCCCccCHHHHHHHHHH
Confidence            21      233556777776667654311                         01236799998876666666655555


Q ss_pred             Hh
Q 019543          334 LR  335 (339)
Q Consensus       334 l~  335 (339)
                      |+
T Consensus       437 l~  438 (457)
T PRK05639        437 ME  438 (457)
T ss_pred             HH
Confidence            54

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.08  E-value=4e-08  Score=91.18  Aligned_cols=163  Identities=16%  Similarity=0.194  Sum_probs=111.5

Q ss_pred             HHHHHHHhHh----C------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           59 ALESLLAKLD----K------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        59 ~le~~la~~~----g------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      .+++.+|++.    |      .+..++++++++|+.++. .|..|||..+++.|-|+|..+-++                
T Consensus       125 ~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~  204 (471)
T KOG0256|consen  125 SFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSN  204 (471)
T ss_pred             HHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEEEEEeecCC
Confidence            4555566554    3      457888888899998654 588999999999999988642111                


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----cc-
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-----LE-  141 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-----~~-  141 (339)
                                                                  ..++..|.++|+-||+||.++..++...     ++ 
T Consensus       205 ~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev  284 (471)
T KOG0256|consen  205 GFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEV  284 (471)
T ss_pred             CccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHH
Confidence                                                        6678889999999999999986665321     11 


Q ss_pred             -----CCCe--EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------HHHHH
Q 019543          142 -----LGAD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRV  207 (339)
Q Consensus       142 -----~~~D--i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------~~~r~  207 (339)
                           ...|  -++.|+||=+|-|| ..-|.|.+.++..+...+++.. ++. .++....++...|..       +++..
T Consensus       285 ~~~~~~~~~rvHivyslSKD~GlpG-fRvGviYS~ne~VvsaA~kmss-f~~-vSs~tQ~~la~LLSD~~f~~~yl~en~  361 (471)
T KOG0256|consen  285 RKDPHLDPDRVHIVYSLSKDFGLPG-FRVGVIYSNNEDVVSAATKMSS-FGL-VSSQTQYLLASLLSDEEFTREYLRENN  361 (471)
T ss_pred             hhccccCCCcEEEEEEeccccCCCc-eEEEEEEecChHHHHHHHHHhh-ccC-CcHHHHHHHHHHhchHHHHHHHHHHHH
Confidence                 1112  46789999999887 5678999998877777776654 332 344444433332221       34455


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 019543          208 EKQQDNAQKIAEFLASH  224 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~  224 (339)
                      +++++..+++.+.|+++
T Consensus       362 ~Rl~~rh~~~~~gLk~l  378 (471)
T KOG0256|consen  362 KRLRIRHRYIVEGLKAL  378 (471)
T ss_pred             HHHHHHHHHHHhhHHhc
Confidence            66666777888888876

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.07  E-value=8e-09  Score=100.32  Aligned_cols=106  Identities=11%  Similarity=0.106  Sum_probs=68.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCC-CcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--h
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPV-LSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~-~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~  183 (339)
                      ++|.++|++||+++|+||+| +|. .+.     -.....|+++  ++|.+++.  ..+|++++++ ++.+.+.....  .
T Consensus       225 ~~l~~lc~~~g~llI~DEv~-tG~R~G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~~-~i~~~~~~~~~~~~  298 (433)
T PRK00615        225 EGIIQTCRRTGSLSIMDEVV-TGFRVAQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAHK-SIMDHLAPEGTIFQ  298 (433)
T ss_pred             HHHHHHHHHcCCEEEEEccc-ccccccHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeecH-HHHhhhcCCCCccc
Confidence            69999999999999999999 343 111     1123458765  79999852  4467887765 67776643211  1


Q ss_pred             -cCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC
Q 019543          184 -EGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       184 -~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~  223 (339)
                       .+...+|..+++++..|+.+.  ...++.+++.+++.+.|++
T Consensus       299 ~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~  341 (433)
T PRK00615        299 AGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEE  341 (433)
T ss_pred             CCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence             233567888877777776653  2355555666666555543

>PLN02590 probable tyrosine decarboxylase

Probab=99.06  E-value=5.1e-08  Score=96.65  Aligned_cols=130  Identities=19%  Similarity=0.233  Sum_probs=87.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc----cc---CCCeEEEeccccccccCCCceEEEEEEcChh-HHHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP----LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~----~~---~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l~~~l~~~~~~  183 (339)
                      ++|.++|++||+++.||+|++......+    +-   ..+|-++...+|++..+  ..+|++++++.. +.+.+..-..+
T Consensus       307 ~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p--~~cg~llvr~~~~l~~a~~~~~~Y  384 (539)
T PLN02590        307 VPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN--QTCSPLWVKDRYSLIDALKTNPEY  384 (539)
T ss_pred             HHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC--cCEEEEEecCHHHHHHHhhcCHHH
Confidence            9999999999999999999976543211    11   14699999999999866  446788777642 22222110101


Q ss_pred             c----------------CC----CCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCch
Q 019543          184 E----------------GS----GLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  241 (339)
Q Consensus       184 ~----------------~~----~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~  241 (339)
                      .                +.    ....+..|+.++  +.+.+.+++++..+.++++.+.+++.+.++.+.-|        
T Consensus       385 L~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~--------  456 (539)
T PLN02590        385 LEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR--------  456 (539)
T ss_pred             hCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--------
Confidence            0                11    111233444443  45678889999999999999999999988766544        


Q ss_pred             HhHhhhcCCCcceEEEeeC
Q 019543          242 ELHYSQAKGAGSVLSFLTG  260 (339)
Q Consensus       242 ~~~~~~~~~~~~ivs~~~~  260 (339)
                               .-++|.|.+.
T Consensus       457 ---------~l~iVcFr~~  466 (539)
T PLN02590        457 ---------YFSLVCFRLA  466 (539)
T ss_pred             ---------ceEEEEEEec
Confidence                     2468888763

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.06  E-value=2e-08  Score=97.90  Aligned_cols=177  Identities=16%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|+||++. .|..+..     .....|+++  ++|.+++ | ...|++++++ ++.+.... ....+
T Consensus       245 ~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~-G-~p~gav~~~~-~i~~~~~~-~~~~T  318 (441)
T PRK05769        245 KELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAG-G-LPLGAVIGRA-ELMFLPPG-SHANT  318 (441)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccC-C-cccEEEEEeh-hhhhcCCC-CCCCC
Confidence            899999999999999999985 3222221     122348774  7899995 3 4456677764 45432211 11112


Q ss_pred             CCCChHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--
Q 019543          186 SGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--  262 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~-r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--  262 (339)
                      ...+|..++.++..|+.+.+ ..++.++..+++.+.|+.+..    .+|.. .         ..+|.|.++.+++.+.  
T Consensus       319 ~~g~p~~~aaa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~----~~~~~-~---------~vrg~G~~~~i~~~~~~~  384 (441)
T PRK05769        319 FGGNPVAAAAALATLEELEEGLLENAQKLGEYLRKELKELKE----KYEFI-G---------DVRGLGLMIGVELVKDRK  384 (441)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCe-e---------eeecceEEEEEEeccCCc
Confidence            34467777777666666543 344555666777777754310    01110 0         0245788898887321  


Q ss_pred             ----HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          263 ----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       263 ----~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                          ..+..+.+.+...|+.+.          |                 ...+.+||+..+..+++.|+.+.++|+
T Consensus       385 ~~~~~~~~~~~~~~~~~Gil~~----------~-----------------~~~~~lr~~p~l~~t~~~id~~~~~l~  434 (441)
T PRK05769        385 EPDPKLRDKVLYEAFKRGLLLL----------G-----------------AGKSAIRIIPPLIITEEEADIGLEILE  434 (441)
T ss_pred             cccHHHHHHHHHHHHhCCcEEe----------c-----------------CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence                234566666666565432          1                 023578999888666666666655554

>PRK05965 hypothetical protein; Provisional

Probab=99.05  E-value=1.3e-08  Score=99.73  Aligned_cols=179  Identities=10%  Similarity=0.098  Sum_probs=106.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH------
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------  179 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~------  179 (339)
                      ++|.++|++||+++|.||++. .|-.+.     ......||++  ++|.++|.--.+ |.+++++ ++.+.+..      
T Consensus       239 ~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~-~i~~~~~~~~~~~~  314 (459)
T PRK05965        239 KAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSGYVPM-GAVLMSD-HVYQGIADGAGAAA  314 (459)
T ss_pred             HHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccCCcce-eEEEEcH-HHHHHHhccccccc
Confidence            999999999999999999973 332221     1223458887  589998631124 4555654 56665532      


Q ss_pred             -HHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          180 -LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       180 -~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                       +....+..-+|+.+++++..|+.+++  ..++.++..+++.+.|+++..     +|...          ..+|.|.++.
T Consensus       315 ~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v~----------~vrG~Gl~~g  379 (459)
T PRK05965        315 PVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRA-----HPLVG----------DVRGRGLLGA  379 (459)
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcc-----CCCEE----------EEeecceEEE
Confidence             11122345678888888777776633  245555666677777765311     22110          0256788888


Q ss_pred             EeeC-CH----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE----eccC
Q 019543          257 FLTG-SL----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----VGIE  321 (339)
Q Consensus       257 ~~~~-~~----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis----vg~e  321 (339)
                      |++. +.          ..+.++.+.+...|+.+.          +                 ...+.||+.    ++-+
T Consensus       380 ie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~----------~-----------------~g~~~i~~~PpL~it~~  432 (459)
T PRK05965        380 LELVADKATKTPFDAALDPADRIFDRAYANGLVFR----------A-----------------FGDGVLGFAPALCCTEG  432 (459)
T ss_pred             EEEeccccccCCCCchhHHHHHHHHHHHhCCeEEE----------e-----------------cCCcEEEEECCCcCCHH
Confidence            8762 11          124556666666665432          1                 023568888    5556


Q ss_pred             CHHHHHHHHHHHHhc
Q 019543          322 DVNDLISDLDKALRT  336 (339)
Q Consensus       322 ~~~~li~~l~~al~~  336 (339)
                      +.+++++.|.++|++
T Consensus       433 ei~~~~~~l~~~l~~  447 (459)
T PRK05965        433 EFDLIFERTRKTLDD  447 (459)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666667777777654

>PRK07046 aminotransferase; Validated

Probab=99.04  E-value=2.7e-08  Score=97.21  Aligned_cols=165  Identities=18%  Similarity=0.116  Sum_probs=103.8

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH-----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD-----------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~-----------------------  107 (339)
                      ++...+|.++|.++.+.+.+.+++||++|+...+.+   ....+.|+.-...|+|..                       
T Consensus       114 ~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~  193 (453)
T PRK07046        114 SEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVH  193 (453)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCc
Confidence            455556777777777778899999999999754432   333566766554454431                       


Q ss_pred             ------------------HHHH--------------------------HHHHHHHHHcCCEEEEeCCcC----CCCCcCc
Q 019543          108 ------------------RLLS--------------------------RKIAEMAHAHGALLLVDNSIM----SPVLSRP  139 (339)
Q Consensus       108 ------------------~~~~--------------------------~~I~~la~~~g~~livD~a~a----~g~~~~~  139 (339)
                                        ..+.                          ++|.++|++||+++|+||++.    .|-...-
T Consensus       194 ~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~  273 (453)
T PRK07046        194 DLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRA  273 (453)
T ss_pred             cccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHH
Confidence                              0000                          899999999999999999984    2211111


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH------H-hc--CCCCChHHHHHHHhchhhHH--HHHH
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ------N-AE--GSGLAPFDCWICLRGVKTMA--LRVE  208 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------~-~~--~~~~~~~~a~~~~~~l~~~~--~r~~  208 (339)
                      .....|+++  ++|.++|.  .-.|++++++ ++.+.+....      . ..  +..-+|+.+++++..|+.+.  ...+
T Consensus       274 ~gv~PDi~t--~gK~lggG--~Pi~av~g~~-~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~  348 (453)
T PRK07046        274 HGLEPDFLV--VGKPIAGG--VPCAVYGFSA-ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYA  348 (453)
T ss_pred             hCCCcccee--ehhhhcCC--CcceeeeehH-HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHH
Confidence            233458875  79999963  4456777764 6766664311      0 11  23457888777777776552  2345


Q ss_pred             HHHHHHHHHHHHHhC
Q 019543          209 KQQDNAQKIAEFLAS  223 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~  223 (339)
                      +.++..++|.+.|+.
T Consensus       349 ~~~~~g~~l~~~L~~  363 (453)
T PRK07046        349 HMLALAARLAAGLRA  363 (453)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666666666653

>PRK06062 hypothetical protein; Provisional

Probab=99.03  E-value=3.8e-08  Score=96.26  Aligned_cols=108  Identities=15%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH--HHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~~~  183 (339)
                      ++|.++|++||+++|+||++. .|-.+..     .....|++  +++|.+++.--.+|+ +++++ ++.+.+...  ...
T Consensus       238 ~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~--t~gK~lggG~~Piga-v~~~~-~i~~~~~~~~~~~~  313 (451)
T PRK06062        238 AGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLI--TFAKGVNSGYVPLGG-VAISE-AIAATFADRPYPGG  313 (451)
T ss_pred             HHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCee--eechhhhcCCcCcEE-EEEcH-HHHHHhccCCCCCC
Confidence            999999999999999999984 3222211     22345866  579999952112454 54554 576665421  111


Q ss_pred             cCCCCChHHHHHHHhchhhHHH--HHHHHHHHH-HHHHHHHhC
Q 019543          184 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA-QKIAEFLAS  223 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a-~~l~~~L~~  223 (339)
                      .+..-+|..+++++..|+.+..  ..++.++.. +++.+.|+.
T Consensus       314 ~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~  356 (451)
T PRK06062        314 LTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRE  356 (451)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2344578888887777776632  233333332 344444543

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.03  E-value=6.8e-09  Score=98.90  Aligned_cols=173  Identities=18%  Similarity=0.123  Sum_probs=114.5

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcC-CCCEEEEcCC--------CccchH---------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLG-TGEEIVAGDD--------LYGGTD---------  107 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~-~GD~Vi~~~~--------~y~~~~---------  107 (339)
                      -.|.  ++|++.+||+..++++|.+.++.+.+|..|...+. .+++ |||++++...        .|..+.         
T Consensus        68 D~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~  145 (467)
T TIGR02617        68 EAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT  145 (467)
T ss_pred             cccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCce
Confidence            3466  88999999999999999999999999998887654 4677 6887774331        122110         


Q ss_pred             ----------------------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCC
Q 019543          108 ----------------------------RLLS-----------------------------RKIAEMAHAHGALLLVDNS  130 (339)
Q Consensus       108 ----------------------------~~~~-----------------------------~~I~~la~~~g~~livD~a  130 (339)
                                                  ..++                             +++.++|++||++++.|.|
T Consensus       146 ~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgA  225 (467)
T TIGR02617       146 ARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSA  225 (467)
T ss_pred             eecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhH
Confidence                                        0000                             9999999999999999986


Q ss_pred             cC---C--------CCCcCc---c----cCCCeEEEeccccccccCCCceEEEEEEcCh---hHHHHHHHHHHh-cC---
Q 019543          131 IM---S--------PVLSRP---L----ELGADIVMHSATKFIAGHSDVMAGVLAVKGE---RLAKELYFLQNA-EG---  185 (339)
Q Consensus       131 ~a---~--------g~~~~~---~----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~---~l~~~l~~~~~~-~~---  185 (339)
                      --   .        +.....   +    ...+|.+..|++|-++.   .+||+++++++   ++.++++.+.-. .|   
T Consensus       226 Rl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgA---pvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~t  302 (467)
T TIGR02617       226 RFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMV---PMGGLLCFKDDSFFDVYTECRTLCVVQEGFPT  302 (467)
T ss_pred             HHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCC---cccceEEecchhHHHHHHHHHhhcccccCCcC
Confidence            41   1        111111   1    14689999999999985   36899999988   555555543221 12   


Q ss_pred             -CCCChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHhCC
Q 019543          186 -SGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       186 -~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~  224 (339)
                       .+|+-.+...+..+|+..  ...+..+-...++|.+.|.+.
T Consensus       303 YGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       303 YGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             cCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence             255554433333445432  334555556677888888764

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.00  E-value=3.4e-08  Score=96.05  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCC-C--C--cCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH--Hh-
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSP-V--L--SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--NA-  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g-~--~--~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~--~~-  183 (339)
                      ++|.++|++||+++|+||++... .  .  ..-.....|++  +++|.+++.  .-.|.+++++ ++.+.+....  .. 
T Consensus       224 ~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDiv--t~gK~lggG--~Pi~av~~~~-~i~~~~~~~~~~~~~  298 (428)
T PRK12389        224 EAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLT--ALGKIIGGG--LPIGAYGGRK-DIMEQVAPLGPAYQA  298 (428)
T ss_pred             HHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCee--eechhhcCC--CceeEEeEHH-HHHhhhccCCCcccc
Confidence            89999999999999999998521 1  1  11122345875  679999863  3334556654 6766654211  12 


Q ss_pred             cCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC
Q 019543          184 EGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~  223 (339)
                      .+...+|+.+++++..|+.+.  ...++.++..+++.+.|++
T Consensus       299 ~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        299 GTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             cCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            234678888888877777663  3455666677777777764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.00  E-value=4.7e-08  Score=96.86  Aligned_cols=120  Identities=22%  Similarity=0.243  Sum_probs=79.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----c-c-CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP-----L-E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~-----~-~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-  183 (339)
                      ++|+++|++||+++.||.|++.+....+     + . .++|.++.|.+|++.+|-+  .|+++.+++.+.+.+.....+ 
T Consensus       285 ~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g--~G~llvr~~~~~~~~~~~~~Yl  362 (522)
T TIGR03799       285 DEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG--AGMVLFKDPALMSAIEHHAEYI  362 (522)
T ss_pred             HHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc--cEEEEEeCHHHHHHhccCcchh
Confidence            9999999999999999999986543221     1 2 2689999999999987643  577777765554433221001 


Q ss_pred             -------------cCCCCC-hHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          184 -------------EGSGLA-PFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       184 -------------~~~~~~-~~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                                   .++... .+..|.+++.+  +.+....++..+.++++.+.|++.|+++.+.-|
T Consensus       363 ~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       363 LRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             cCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence                         011111 11233333333  346777788889999999999999988766544

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.99  E-value=8.9e-09  Score=97.34  Aligned_cols=160  Identities=21%  Similarity=0.265  Sum_probs=103.6

Q ss_pred             HHHHHHhHhCC-CeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchHHHHH------------------------
Q 019543           60 LESLLAKLDKA-DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTDRLLS------------------------  111 (339)
Q Consensus        60 le~~la~~~g~-~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~~~~~------------------------  111 (339)
                      +-+.+.+.++. |..-+++|||.|.+..++|   ...-|.|+.-.-.|+|....+-                        
T Consensus        98 ~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~  177 (432)
T COG0001          98 LAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAK  177 (432)
T ss_pred             HHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhc
Confidence            33445555555 7888999999999865544   4456888877777766431110                        


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCC-CCC----cCcc
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMS-PVL----SRPL  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~-g~~----~~~~  140 (339)
                                                                    ++|.++|++||+.||.||++.. -+.    +...
T Consensus       178 ~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~  257 (432)
T COG0001         178 HTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYY  257 (432)
T ss_pred             cEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccccc
Confidence                                                          9999999999999999999831 111    1122


Q ss_pred             cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-C--CCCChHHHHHHHhchhhHHH---HHHHHHHHH
Q 019543          141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G--SGLAPFDCWICLRGVKTMAL---RVEKQQDNA  214 (339)
Q Consensus       141 ~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~--~~~~~~~a~~~~~~l~~~~~---r~~~~~~~a  214 (339)
                      ....|+.  ++.|.+||.  .-.|++.++ +++.+.+......+ .  ..-+|...+++...|+.+..   -.++..+..
T Consensus       258 gi~PDlt--tlGKiIGGG--lP~ga~gGr-~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~  332 (432)
T COG0001         258 GVEPDLT--TLGKIIGGG--LPIGAFGGR-AEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALG  332 (432)
T ss_pred             CcCcchh--hhhhhhcCC--cceeeeccH-HHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            2344654  479999953  556777766 46777655443333 2  23356666666666665543   467777778


Q ss_pred             HHHHHHHhCC
Q 019543          215 QKIAEFLASH  224 (339)
Q Consensus       215 ~~l~~~L~~~  224 (339)
                      ++|++.|++.
T Consensus       333 ~~L~~gl~~~  342 (432)
T COG0001         333 ERLAEGLRAA  342 (432)
T ss_pred             HHHHHHHHHH
Confidence            8888877753

>PRK07482 hypothetical protein; Provisional

Probab=98.99  E-value=7.1e-08  Score=94.58  Aligned_cols=146  Identities=14%  Similarity=0.112  Sum_probs=85.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|+||++. .|-.+.     ......|+++  ++|.++|.-..+++ +++++ ++.+.+...     
T Consensus       244 ~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi~a-v~~~~-~i~~~~~~~~~~~~  319 (461)
T PRK07482        244 PAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAYAPLSG-SIVGE-KVWDVLEQGSDEHG  319 (461)
T ss_pred             HHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCccccce-eeecH-HHHHHHhcccccCC
Confidence            999999999999999999973 332222     1233458888  59999853112444 44543 565555321     


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCc
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAG  252 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~  252 (339)
                        ....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+    .++.|..                  .+|.|
T Consensus       320 ~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~------------------vrG~G  381 (461)
T PRK07482        320 AIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE------------------VRGVG  381 (461)
T ss_pred             ccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE------------------Eeece
Confidence              0112345678888888777776533  23444455566666654    3333222                  24567


Q ss_pred             ceEEEeeCC-H----------HHHHHHHccCCcceeec
Q 019543          253 SVLSFLTGS-L----------ALSKHVVETTKYFSITV  279 (339)
Q Consensus       253 ~ivs~~~~~-~----------~~~~~~~~~L~~~~i~v  279 (339)
                      .++.+++.. .          ..+.++...+...|+.+
T Consensus       382 lm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~  419 (461)
T PRK07482        382 MLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIA  419 (461)
T ss_pred             eEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEE
Confidence            888888732 1          11345666665656543

>PRK07481 hypothetical protein; Provisional

Probab=98.98  E-value=5.1e-08  Score=95.30  Aligned_cols=177  Identities=19%  Similarity=0.202  Sum_probs=103.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|.||++. .|-.+.     ......||++  ++|.+++.-..+ |.+++++ ++.+.+..-     
T Consensus       237 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~-~i~~~~~~~~~~~~  312 (449)
T PRK07481        237 PLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGYVPL-GATMVNA-RIADAFEANADFGG  312 (449)
T ss_pred             HHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCCcCc-eEEEEcH-HHHHHHhccCcccc
Confidence            899999999999999999973 332221     1223458776  599998521123 4555654 566655421     


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCc
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAG  252 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~  252 (339)
                        ....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+++    +.+..                  .+|.|
T Consensus       313 ~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrG~G  374 (449)
T PRK07481        313 AIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGD------------------VRGKG  374 (449)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEE------------------Eeecc
Confidence              1111234578887777777776532  3445555566666666543    22211                  24577


Q ss_pred             ceEEEeeC-C----------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe---
Q 019543          253 SVLSFLTG-S----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV---  318 (339)
Q Consensus       253 ~ivs~~~~-~----------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv---  318 (339)
                      .++.+.+. +          ...+..+.+.+...|+.+...                            ...+||+.   
T Consensus       375 lm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~----------------------------g~~i~l~Ppl~  426 (449)
T PRK07481        375 LMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS----------------------------GTKIILSPPLV  426 (449)
T ss_pred             eEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec----------------------------CCEEEEECCCC
Confidence            88888762 2          112345655555555543211                            12467774   


Q ss_pred             -ccCCHHHHHHHHHHHHhcCC
Q 019543          319 -GIEDVNDLISDLDKALRTGP  338 (339)
Q Consensus       319 -g~e~~~~li~~l~~al~~~~  338 (339)
                       +.++.+.+++.|.++|++++
T Consensus       427 it~~eid~~~~~l~~~l~~~~  447 (449)
T PRK07481        427 IQREDVDRIVDALDAGLSAVP  447 (449)
T ss_pred             CCHHHHHHHHHHHHHHHHhcc
Confidence             44666777777778877665

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.98  E-value=4.8e-08  Score=95.55  Aligned_cols=148  Identities=13%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|.||++ +.|-.+.     ......||++.  +|.++|. -.-.|.+++++ ++.+.+..-     
T Consensus       246 ~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~--gKgl~gG-~~Pi~av~~~~-ei~~~~~~~~~~~~  321 (453)
T PRK06943        246 RGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCL--SKGISGG-YLPLSLVLSRD-AIFAAFYDDDVTRG  321 (453)
T ss_pred             HHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEee--ehhhccC-cccceEEEEcH-HHHHhhcccCccCC
Confidence            99999999999999999997 3433222     12334688874  8999953 12245555654 566555321     


Q ss_pred             -HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          181 -QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       181 -~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                       ....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+++.     .+|.+.          ..+|.|.++.+
T Consensus       322 ~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-----~~~~v~----------~vrG~Gl~~gv  386 (453)
T PRK06943        322 FLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLA-----AHPQVR----------HLRQRGTIFAF  386 (453)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-----cCCCEE----------eEeccccEEEE
Confidence             0112334578888777777776633  24555556667777766531     122211          02467888888


Q ss_pred             eeC-CH----HHHHHHHccCCcceee
Q 019543          258 LTG-SL----ALSKHVVETTKYFSIT  278 (339)
Q Consensus       258 ~~~-~~----~~~~~~~~~L~~~~i~  278 (339)
                      ++. +.    ..+.++.+.+...|+.
T Consensus       387 el~~~~~~~~~~~~~i~~~~~~~Gll  412 (453)
T PRK06943        387 DVALDGDAARTFSRRFFEAALERELL  412 (453)
T ss_pred             EEccCCCcchHHHHHHHHHHHHCCcE
Confidence            874 22    1245566666555554

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.98  E-value=1.2e-07  Score=92.49  Aligned_cols=175  Identities=19%  Similarity=0.211  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH-HH---
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQ---  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~-~~---  181 (339)
                      ++|.++|++||+++|.||++ +.|-.+..     .....|+++  ++|.+.     .+|+++++  ++.+.... +.   
T Consensus       249 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~--~i~~~~~~~~~~~~  319 (443)
T PRK08297        249 AAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGR--RVDEVEDNVFAVSS  319 (443)
T ss_pred             HHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecch--HHHHhhhhhccCcc
Confidence            89999999999999999998 44433221     223468886  699984     25566543  23222211 10   


Q ss_pred             Hhc-CCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          182 NAE-GSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       182 ~~~-~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      ... +..-+|+.+++++..|+.+.  ...++.++..+++.+.|+++..    .+|....         ..+|.|.++.|+
T Consensus       320 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~~~---------~vrg~G~~~~i~  386 (443)
T PRK08297        320 RINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAA----EFPAVVS---------NVRGRGLMCAFD  386 (443)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----HCCCcce---------eeeccceEEEEE
Confidence            122 33467887777777776553  2345555666666666654310    0121100         024578899999


Q ss_pred             eCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.+......|.+.+...|+.+.          |.                 ....+||+..+..+++.|+.+.++|+
T Consensus       387 ~~~~~~~~~~~~~l~~~Gvl~~----------~~-----------------~~~~lr~~P~l~~t~~eid~~l~~l~  436 (443)
T PRK08297        387 LPTTADRDEVIRRLWEEGVLVL----------PC-----------------GERSIRFRPALTVTTEEIDAAIDALR  436 (443)
T ss_pred             ecCHHHHHHHHHHHHHCCEEEe----------cC-----------------CCCeEEEECCccCCHHHHHHHHHHHH
Confidence            8766556678877766666542          10                 12468998777666665555555554

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.97  E-value=1.1e-08  Score=100.37  Aligned_cols=107  Identities=13%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC------cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-hc
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AE  184 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~------~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~~  184 (339)
                      ++|.++|++||+++|+||++ +|....      -.....|++  +++|.++|. -.+| .++++ +++.+.+..... ..
T Consensus       270 ~~lr~lc~~~g~lLI~DEV~-tGfR~g~~ga~~~~gv~PDi~--t~gK~lggG-~Pig-av~g~-~ei~~~~~~~~~~~~  343 (474)
T PLN02482        270 EGLREITKENGALLVFDEVM-TGFRIAYGGAQEYFGITPDLT--TLGKVIGGG-LPVG-AYGGR-REIMEMVAPAGPMYQ  343 (474)
T ss_pred             HHHHHHHHHcCCEEEEeccc-cCeecCcchHhHHhCCCCCEE--EecchhhCC-CceE-EEEEc-HHHHHhhccCCCccc
Confidence            78999999999999999998 454211      112235774  679999853 2344 45665 467776642111 12


Q ss_pred             --CCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCC
Q 019543          185 --GSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       185 --~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~  224 (339)
                        +..-+|..+++++..|+.+.  ...++.+++.+++.+.|++.
T Consensus       344 ~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l  387 (474)
T PLN02482        344 AGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEA  387 (474)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence              22346776666666666653  34566667777787777653

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.96  E-value=1.1e-07  Score=92.62  Aligned_cols=176  Identities=18%  Similarity=0.201  Sum_probs=107.7

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH-H---H
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-L---Q  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~-~---~  181 (339)
                      ++|.++|++||+++|+||++. .|..+..     .....|+++  ++|.+.     .+|++...  .+.+.... +   .
T Consensus       242 ~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~~-----~~g~~~~~--~i~~~~~~~~~~~~  312 (431)
T TIGR03251       242 RAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-----VCGIMAGR--RVDEVADNVFAVPS  312 (431)
T ss_pred             HHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccCc-----cceEEecc--hHHHhhhhcccCcc
Confidence            999999999999999999985 4433221     233568886  688862     35666543  22221111 1   0


Q ss_pred             Hh-cCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          182 NA-EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       182 ~~-~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      .. .+...+|..++++...|+.+..  ..++.++..+++.+.|++...    .+|.+..+         .++.|.++.++
T Consensus       313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~----~~~~~i~~---------vrg~G~~~~i~  379 (431)
T TIGR03251       313 RLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAA----EFPHLVSN---------PRGRGLMCAFD  379 (431)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH----hCccceec---------ccccceeEEEE
Confidence            12 2234577777777766766532  234445555666665554210    11211110         14578888999


Q ss_pred             eCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          259 TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+.+....+.+.|...|+.+.          |.                 ..+.+||++.+..+++.|+.+.++|++
T Consensus       380 ~~~~~~~~~~~~~l~~~Gvl~~----------~~-----------------g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       380 LPSTADRDEVIRQLYREGVLLL----------GC-----------------GERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             eCCHHHHHHHHHHHHhCCeEEe----------cC-----------------CCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            8766556678887777676542          10                 125699999999999999999988875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK07036 hypothetical protein; Provisional

Probab=98.96  E-value=8.4e-08  Score=94.16  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=78.7

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcC------cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~------~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----  180 (339)
                      ++|.++|++||+++|+||++ +.|-.+.      -.....||++  ++|.+++. -.-.|.+++++ ++.+.+...    
T Consensus       244 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~gG-~~Pi~av~~~~-~i~~~~~~~~~~~  319 (466)
T PRK07036        244 ARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTSG-YQPLGAVIISE-RLLDVISGPNAKG  319 (466)
T ss_pred             HHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--EccccccC-ccccEEEEEcH-HHHHHHhcccCcC
Confidence            99999999999999999998 4443221      1233458765  69999852 11234555654 676655421    


Q ss_pred             ---HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceE
Q 019543          181 ---QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  255 (339)
Q Consensus       181 ---~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~iv  255 (339)
                         ....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.+.     .+|.. .         ..+|.|.++
T Consensus       320 ~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~-----~~~~v-~---------~vrG~Gl~~  384 (466)
T PRK07036        320 NVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLR-----ELPLV-G---------DVRGDHLMA  384 (466)
T ss_pred             cccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhc-----cCCCE-E---------EEEeeceEE
Confidence               1112345578888888777776632  35555666677777775431     12211 0         024678888


Q ss_pred             EEee
Q 019543          256 SFLT  259 (339)
Q Consensus       256 s~~~  259 (339)
                      .|++
T Consensus       385 ~ve~  388 (466)
T PRK07036        385 CVEC  388 (466)
T ss_pred             EEEE
Confidence            8887

>PRK06917 hypothetical protein; Provisional

Probab=98.96  E-value=1.9e-07  Score=91.30  Aligned_cols=146  Identities=12%  Similarity=0.123  Sum_probs=87.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--h
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~  183 (339)
                      ++|.++|++||+++|+||++. .|-.+..     .....|++  +++|.+++. -.-.|++++++ ++.+.+.....  .
T Consensus       224 ~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~--~~gK~l~~G-~~Pi~a~~~~~-~i~~~~~~~~~~~~  299 (447)
T PRK06917        224 KVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIM--TLGKGLGAG-YTPIAATVVSD-RVMEPILRGSRSIM  299 (447)
T ss_pred             HHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEE--EeeehhccC-CcceEEEEEcH-HHHHHHhccCcccc
Confidence            899999999999999999984 2222211     22245875  469999852 11245666654 66665542111  1


Q ss_pred             c--CCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceE
Q 019543          184 E--GSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  255 (339)
Q Consensus       184 ~--~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~iv  255 (339)
                      .  +..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.+    +.+..                  .+|.|.++
T Consensus       300 ~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vrG~Gl~~  361 (447)
T PRK06917        300 SGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGD------------------VRGKGLLI  361 (447)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE------------------EeecceEE
Confidence            2  344578887777777776532  3455556666666666543    22221                  24577888


Q ss_pred             EEeeC-C----------HHHHHHHHccCCcceeec
Q 019543          256 SFLTG-S----------LALSKHVVETTKYFSITV  279 (339)
Q Consensus       256 s~~~~-~----------~~~~~~~~~~L~~~~i~v  279 (339)
                      .|++. +          .+.+..+.+.+...|+.+
T Consensus       362 ~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~  396 (447)
T PRK06917        362 GVEFVADKKTKQPFSKSQAVASELISVAAKNGLLL  396 (447)
T ss_pred             EEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEE
Confidence            88762 1          122456776666666654

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.96  E-value=1.2e-08  Score=103.14  Aligned_cols=172  Identities=16%  Similarity=0.135  Sum_probs=109.7

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCC----ccc-hH--------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDL----YGG-TD--------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~----y~~-~~--------------------  107 (339)
                      ....+.|+..|++||++++..+.+| +.+|.+ ++++++|||.|+++++.    |++ ..                    
T Consensus       174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g  253 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIG  253 (720)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcC
Confidence            4578999999999999999988888 567765 56699999999999874    332 11                    


Q ss_pred             ----HH-----------------------HH----------------HHHHHH-HHHcCCEEEEeCCcCCCCCcCc----
Q 019543          108 ----RL-----------------------LS----------------RKIAEM-AHAHGALLLVDNSIMSPVLSRP----  139 (339)
Q Consensus       108 ----~~-----------------------~~----------------~~I~~l-a~~~g~~livD~a~a~g~~~~~----  139 (339)
                          .-                       ++                ++|+++ +++++ +|++|+||+....+.+    
T Consensus       254 ~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~  332 (720)
T PRK13578        254 GIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMAD  332 (720)
T ss_pred             CCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCccccc
Confidence                00                       11                888888 78888 9999999976432211    


Q ss_pred             -----ccCCCe----EEEeccccccccCCCceEEEEEEcChhH--------HHHHHHHHHhcC-CCCC-hHHHHH--HHh
Q 019543          140 -----LELGAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQNAEG-SGLA-PFDCWI--CLR  198 (339)
Q Consensus       140 -----~~~~~D----i~~~S~sK~l~g~~~~~gG~v~~~~~~l--------~~~l~~~~~~~~-~~~~-~~~a~~--~~~  198 (339)
                           +..|+|    +++.|.+|.+++.  .++.+|..++..+        .+++...-.++. ++.+ ++.|.+  +.+
T Consensus       333 ~p~~al~~GaD~p~i~v~QStHKtL~al--TQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~  410 (720)
T PRK13578        333 CSPLLLELNENDPGIFVTQSVHKQQAGF--SQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAK  410 (720)
T ss_pred             CChhhhhcCCCCCCeEEEEChhhcchhh--hhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence                 356889    9999999999965  5677787755321        134544433443 3222 122211  111


Q ss_pred             chhh--HHHHHHHHHHHHHHHHHHH-hCCCCceE
Q 019543          199 GVKT--MALRVEKQQDNAQKIAEFL-ASHPRVKK  229 (339)
Q Consensus       199 ~l~~--~~~r~~~~~~~a~~l~~~L-~~~~~i~~  229 (339)
                      .++.  -....++..+.+..+++.+ +..++++.
T Consensus       411 ~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~  444 (720)
T PRK13578        411 MHEGESGRRLWMECVKLGIEARKLILARCKLIRP  444 (720)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeee
Confidence            1221  1233445556667777776 66666543

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.95  E-value=3e-08  Score=97.15  Aligned_cols=180  Identities=12%  Similarity=0.172  Sum_probs=103.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH------
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------  179 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~------  179 (339)
                      ++|.++|++||+++|.||++. .|-.+..     .....||++  ++|.++|.-..+ |.+++++ ++.+.+..      
T Consensus       248 ~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi-~av~~~~-ei~~~~~~~~~~~~  323 (460)
T PRK06916        248 KGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGGYLPI-AITVTTD-EIYNAFYGDYEEQK  323 (460)
T ss_pred             HHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcCcccc-ceeeecH-HHHHHhhccccccC
Confidence            999999999999999999972 3222211     223458775  699998531123 4555554 56554431      


Q ss_pred             -HHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          180 -LQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       180 -~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                       .....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.+..     +|.+.          ..+|.|.++.
T Consensus       324 ~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-----~~~v~----------~vrG~Glm~g  388 (460)
T PRK06916        324 TFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-----LKHVG----------DIRQLGLMVG  388 (460)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-----CCCeE----------EeecCCceee
Confidence             01111334578887777777776532  355566667777777765421     22110          0246778888


Q ss_pred             EeeCCH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec----cC
Q 019543          257 FLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----IE  321 (339)
Q Consensus       257 ~~~~~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg----~e  321 (339)
                      +++.+.           ....++...+...|+.+.          |                  ..+.+|+...    -+
T Consensus       389 iel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~----------~------------------~g~~l~~~Ppl~it~~  440 (460)
T PRK06916        389 IELVKNKETKEPFEWTERVGVQVCKRSRELGMLTR----------P------------------LGNTIVFMPPLASTID  440 (460)
T ss_pred             EEeecccccccCCCchhhHHHHHHHHHHHCCeEEE----------e------------------cCCEEEEeCCcccCHH
Confidence            876321           112456666655565432          1                  1145777744    45


Q ss_pred             CHHHHHHHHHHHHhcCC
Q 019543          322 DVNDLISDLDKALRTGP  338 (339)
Q Consensus       322 ~~~~li~~l~~al~~~~  338 (339)
                      +.+..++.|.++|++++
T Consensus       441 ~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        441 ELDEMLRILYKAISDVT  457 (460)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            55566666666666554

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.95  E-value=7.7e-09  Score=96.72  Aligned_cols=152  Identities=24%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             cccCCCCc---hHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCC-Cc-cch---HHHHH--------
Q 019543           48 DYTRSGNP---TRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDD-LY-GGT---DRLLS--------  111 (339)
Q Consensus        48 ~y~r~~~~---~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~-~y-~~~---~~~~~--------  111 (339)
                      .|++..+.   ....+.+.+..+.|++.+.++++..+|+..++..+.++-+|+++.- .- ++.   ...++        
T Consensus        58 e~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~gg~~~v~d~~~~aG~~l~E  137 (395)
T COG1921          58 ETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVEGGAFRVPDIIRLAGAKLVE  137 (395)
T ss_pred             eeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhccCCeEEEEccccccCCCCChhHHHHHcCCEEEE
Confidence            45554332   2336666677777889999999999999865553344556665532 11 111   11111        


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-----cCcccCCCeEE
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIV  147 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~-----~~~~~~~~Di~  147 (339)
                                                             ++++++||+||+++++|.+.+..+.     ...+..|+|++
T Consensus       138 vG~tn~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV  217 (395)
T COG1921         138 VGTTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLV  217 (395)
T ss_pred             ecccCcCCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEE
Confidence                                                   8899999999999999999866533     12346799999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  203 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~  203 (339)
                      ++|..|.|+||   .+|.|++++ ++++++++..-..+....+..-+.....|+.+
T Consensus       218 ~~SgdKllgGP---qaGii~GkK-elI~~lq~~~l~Ralrv~K~tla~l~~aLe~y  269 (395)
T COG1921         218 SFSGDKLLGGP---QAGIIVGKK-ELIEKLQSHPLKRALRVDKETLAALEAALELY  269 (395)
T ss_pred             EEecchhcCCC---ccceEechH-HHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHH
Confidence            99999999986   479999875 79888876543344555554444444444443

>PRK06148 hypothetical protein; Provisional

Probab=98.94  E-value=9.3e-08  Score=101.94  Aligned_cols=176  Identities=15%  Similarity=0.114  Sum_probs=106.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcC------cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hh
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSR------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~------~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~  183 (339)
                      ++|.++|++||+++|.||++ +.|-.+.      ......||++  ++|.+|+.  .-.|.+++++ ++.+.+..-. ..
T Consensus       808 ~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lggG--~Plgav~~~~-ei~~~~~~g~~~~  882 (1013)
T PRK06148        808 REVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGNG--HPMGAVVTTR-EIADSFDNGMEYF  882 (1013)
T ss_pred             HHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccCC--cceEEEEEcH-HHHhhccCCCccc
Confidence            99999999999999999998 4443222      1223458865  59999863  3345565653 6666543211 11


Q ss_pred             cCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          184 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                      .+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+++    +.|..                  .+|.|.++.+
T Consensus       883 ~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------VrG~Gl~~gv  944 (1013)
T PRK06148        883 NTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGD------------------VRGMGLFLGI  944 (1013)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceE------------------EeeeceEEEE
Confidence            2345578888888777776632  2344455566666666543    22221                  2457788888


Q ss_pred             eeCC--------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHH
Q 019543          258 LTGS--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  329 (339)
Q Consensus       258 ~~~~--------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~  329 (339)
                      ++..        .+.+..+.+.+...|+.+...+                         ...+.|||..-+..+++.|+.
T Consensus       945 el~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-------------------------~~~~vlr~~Ppl~it~~~id~  999 (1013)
T PRK06148        945 ELVTDRKTKAPATAIARYVKNGARERGILIGTEG-------------------------PHDNVLKIRPPLIFSRADADH  999 (1013)
T ss_pred             EecCCccccCccHHHHHHHHHHHHhCCeEEeccC-------------------------CCCCEEEEeCCccCCHHHHHH
Confidence            7632        1235567777777776543211                         123678888877666665555


Q ss_pred             HHHHHh
Q 019543          330 LDKALR  335 (339)
Q Consensus       330 l~~al~  335 (339)
                      +.++|+
T Consensus      1000 ~l~~l~ 1005 (1013)
T PRK06148       1000 LLEVLD 1005 (1013)
T ss_pred             HHHHHH
Confidence            555543

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=98.94  E-value=7.3e-08  Score=91.67  Aligned_cols=239  Identities=15%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             chHHHHHHHHHhHhCCC---eE-EEcCcHHHHHHH-HHHhc-CCCCEEEEcCCCccch-H-HHHH---------------
Q 019543           55 PTRDALESLLAKLDKAD---RA-LCFTSGMAALAA-VTHLL-GTGEEIVAGDDLYGGT-D-RLLS---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~-l~~~sG~~A~~~-il~ll-~~GD~Vi~~~~~y~~~-~-~~~~---------------  111 (339)
                      ...++.++.|.++++.+   .+ ++..||+.++.+ +.+++ ++||.|++.. .|+.- . .+.+               
T Consensus        39 ~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~g~~~v~~l~~~~g  117 (374)
T TIGR01365        39 EKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQLKLPDVRVLEAEYG  117 (374)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhcCCCCcEEEcCCCC
Confidence            45677889999999853   24 457788999975 55688 5899888754 33221 1 1111               


Q ss_pred             --------------------------HHHHHHHHH-cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEE
Q 019543          112 --------------------------RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 --------------------------~~I~~la~~-~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                                --+.+++++ +++++|||.+.+.|...-... ++|++++|..|+|+++++  -+
T Consensus       118 ~~~~~~~ve~~~~v~~vhnETSTGv~npv~~i~~~~~~~lliVDavSs~g~~~l~~d-~iDv~~tgsQK~L~~ppG--ls  194 (374)
T TIGR01365       118 KLPDLKKVDFKNDVVFTWNGTTSGVRVPNGDFIPADREGLTICDATSAAFAQDLDYH-KLDVVTFSWQKVLGGEGA--HG  194 (374)
T ss_pred             CCCCHHHcCCCCCEEEecCCCchheeccccccccccCCCcEEEEccchhcCCCCChh-HCcEEEEechhccCCCCc--eE
Confidence                                      223344444 589999999987775321222 589999999999998864  46


Q ss_pred             EEEEcChhHHHHHHH---------HH----------Hhc-C--CCCChHHH-HHHHhch----h--hHHHHHHHHHHHHH
Q 019543          165 VLAVKGERLAKELYF---------LQ----------NAE-G--SGLAPFDC-WICLRGV----K--TMALRVEKQQDNAQ  215 (339)
Q Consensus       165 ~v~~~~~~l~~~l~~---------~~----------~~~-~--~~~~~~~a-~~~~~~l----~--~~~~r~~~~~~~a~  215 (339)
                      +++.+++ .+++...         +.          +.. +  ...++..+ +.+...|    +  -++.+.++++++++
T Consensus       195 ~v~vs~~-Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~  273 (374)
T TIGR01365       195 MLILSPR-AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLA  273 (374)
T ss_pred             EEEECHH-HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            7777754 4444331         10          001 1  12233322 2222333    2  27788999999999


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHH------H-----HHHHHccCCcceeecccCC
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLA------L-----SKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~------~-----~~~~~~~L~~~~i~v~~G~  283 (339)
                      .+++++++.+.+..  ++   .++.+         .++ ++.|.+.+..      .     ..+|.+.|+..|+.+..|.
T Consensus       274 ~l~~~l~~lg~l~~--~~---~~~~~---------rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~  339 (374)
T TIGR01365       274 VLEAFVAKNNWIHF--LA---ETPEI---------RSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGS  339 (374)
T ss_pred             HHHHHHHHCCCccc--CC---CChhh---------cCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccc
Confidence            99999998864321  11   11110         233 4445552221      1     4677777877777654332


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .      +                 ..+..+||+-..+-.++.++.|..+|+
T Consensus       340 ~------~-----------------~~~~~fRIg~~G~i~~~di~~l~~~l~  368 (374)
T TIGR01365       340 Y------R-----------------DAPSGLRIWCGATVEKSDLECLCPWLD  368 (374)
T ss_pred             c------c-----------------cCCCceEEecCCcCCHHHHHHHHHHHH
Confidence            1      1                 123679999876555555555655553

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07480 putative aminotransferase; Validated

Probab=98.93  E-value=5.8e-08  Score=95.07  Aligned_cols=129  Identities=16%  Similarity=0.144  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH----HH
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF----LQ  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~----~~  181 (339)
                      ++|.++|++||+++|+||++ +.|-.+..     .....|+++  ++|.++|.--.++ .+++++ ++.+.+..    +.
T Consensus       243 ~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi~-av~~~~-~i~~~~~~~~~~~~  318 (456)
T PRK07480        243 PEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGYIPMG-AVGVGD-RVAEVLIEEGGEFN  318 (456)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCCccce-EEEEcH-HHHHHHhcCCCCcc
Confidence            99999999999999999998 34322221     222357764  6999985211244 444553 56665531    11


Q ss_pred             HhcCCCCChHHHHHHHhchhhHHH--HHHHH-HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          182 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQ-QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       182 ~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~-~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      ...+..-+|+.+++++..|+.+.+  ..++. ++..+++.+.|+....     +|...          ..+|.|.++.++
T Consensus       319 ~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~-----~~~i~----------~vrG~Glm~gie  383 (456)
T PRK07480        319 HGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELAD-----HPLVG----------EVRGVGLVGAIE  383 (456)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhc-----CCCee----------eEEeecceEEEE
Confidence            123455678888888877776643  23444 3455666666664311     22110          024577888888


Q ss_pred             e
Q 019543          259 T  259 (339)
Q Consensus       259 ~  259 (339)
                      +
T Consensus       384 ~  384 (456)
T PRK07480        384 L  384 (456)
T ss_pred             E
Confidence            7

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.92  E-value=5.3e-08  Score=95.09  Aligned_cols=173  Identities=13%  Similarity=0.108  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccC--CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~--~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~  183 (339)
                      ++|.++|++||+++|+||++. .|-.+..     ...  ..||++  ++|.+++     ||+++.+ +.+ .........
T Consensus       275 ~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~-----gG~~~~~-~~~-~~~~~~~~~  345 (464)
T TIGR00699       275 RKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQT-----AGYFFHD-PAF-RPNKPYRQF  345 (464)
T ss_pred             HHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhcc-----CCccccc-hhc-cCCCCcccc
Confidence            999999999999999999982 3222221     112  268744  6999963     2344332 211 100001111


Q ss_pred             cCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CC-CceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          184 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                      .+..-+|..+++++..|+.+..  ..++..+..+++.+.|++    +| .|..|..                .|.|.++.
T Consensus       346 ~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg----------------~G~Glm~g  409 (464)
T TIGR00699       346 NTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG----------------KGRGTFIA  409 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc----------------cCeEEEEE
Confidence            2334567777777766665532  233333444566666554    33 1221110                15789999


Q ss_pred             EeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          257 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       257 ~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +++.+...+.++.+.+...|+.+...                           ..+.|||+..+..+++.|+.+.++|++
T Consensus       410 ie~~~~~~~~~i~~~~~~~Gvl~~~~---------------------------g~~~ir~~Ppl~it~~eid~~~~~l~~  462 (464)
T TIGR00699       410 WDTPDEAKRDKLLKKARNNGVNIGGC---------------------------GVKAIRLRPMLVFQKHHADIFLEIISK  462 (464)
T ss_pred             EecCCHHHHHHHHHHHHHCCcEEecC---------------------------CCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99876655677888777767654310                           236799999999988888888888865

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.87  E-value=1.9e-07  Score=91.60  Aligned_cols=124  Identities=16%  Similarity=0.157  Sum_probs=74.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      +++.++|++||+++|.||++. .|-.+.     -.....||++.  +|.++|.  .-.|.+++++ ++ +.+.......+
T Consensus       255 ~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~--gKglggG--~PlsAv~~~~-~~-~~~~~~~~~~T  328 (464)
T PRK06938        255 RGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVL--SKAIGGS--LPLAVVVYRE-WL-DTWQPGAHAGT  328 (464)
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEe--eccccCC--CceEEEeehh-Hh-hccCCCCCCCC
Confidence            999999999999999999973 332221     12334588874  8999863  3345565654 33 32211111123


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.    +|.|..                  .+|.|.++.+++
T Consensus       329 ~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------VrG~Glm~gie~  390 (464)
T PRK06938        329 FRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD------------------VRGRGLMLGVEI  390 (464)
T ss_pred             CCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee------------------eeccceEEEEEe
Confidence            45578888877777776532  234444555666666654    332222                  245778888887

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.86  E-value=1.7e-07  Score=85.91  Aligned_cols=177  Identities=24%  Similarity=0.224  Sum_probs=111.2

Q ss_pred             CCCcccCC--CCchHHHHHHHHH----hHhCCCe----E-EEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH-----
Q 019543           45 GPYDYTRS--GNPTRDALESLLA----KLDKADR----A-LCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD-----  107 (339)
Q Consensus        45 ~~~~y~r~--~~~~~~~le~~la----~~~g~~~----~-l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~-----  107 (339)
                      .+|...|+  +|...+++|....    +.|+.+.    + +-.-||+-||+++. ++++|+|.|.--+.--+|..     
T Consensus        70 EGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~  149 (477)
T KOG2467|consen   70 EGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQ  149 (477)
T ss_pred             cCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccc
Confidence            34555554  6777777775433    3455431    2 23448999998766 49999999987654222211     


Q ss_pred             -----------------------------H-------HHH-----------------HHHHHHHHHcCCEEEEeCCcC--
Q 019543          108 -----------------------------R-------LLS-----------------RKIAEMAHAHGALLLVDNSIM--  132 (339)
Q Consensus       108 -----------------------------~-------~~~-----------------~~I~~la~~~g~~livD~a~a--  132 (339)
                                                   .       .++                 +++.++|++.|++|+.|-+|-  
T Consensus       150 T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISg  229 (477)
T KOG2467|consen  150 TPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISG  229 (477)
T ss_pred             cCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHH
Confidence                                         0       000                 899999999999999999994  


Q ss_pred             ---CCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh----------hHHHHHHHHHH---hc---CCCCChHHH
Q 019543          133 ---SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE----------RLAKELYFLQN---AE---GSGLAPFDC  193 (339)
Q Consensus       133 ---~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~----------~l~~~l~~~~~---~~---~~~~~~~~a  193 (339)
                         .++..+|+++ +|||+.|.+|+|-||   +||+|--++.          +..-.+....+   +.   |..=+...+
T Consensus       230 LVAA~vipsPFey-~DiVTTTTHKsLRGP---Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIa  305 (477)
T KOG2467|consen  230 LVAAGVIPSPFEY-CDIVTTTTHKSLRGP---RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIA  305 (477)
T ss_pred             HHhcccCCCcccc-cceeeccccccccCC---cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHH
Confidence               4555677775 899999999999976   5788876531          11111222111   11   211111112


Q ss_pred             H--HHHhc--hhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          194 W--ICLRG--VKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       194 ~--~~~~~--l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +  .++.+  -..+.+..+|..+|++.+++.|....
T Consensus       306 alAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~G  341 (477)
T KOG2467|consen  306 ALAVALKQAMTPEFKEYQKQVLKNAKALASALISRG  341 (477)
T ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2  22222  23467778888899999999998763

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=98.85  E-value=2.5e-07  Score=82.79  Aligned_cols=190  Identities=15%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc----Cccc-CC-CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLS----RPLE-LG-ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-  184 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~----~~~~-~~-~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-  184 (339)
                      .+|.++|++||++|++|+|++.+...    +... ++ --+.|.|+||. |-|| .+.|.++++ ++++..+.++..+. 
T Consensus       202 ~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG-~R~GIiIan-e~viqaitnmn~iis  278 (417)
T COG3977         202 AKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKL-GLPG-SRCGIIIAN-EKVIQAITNMNGIIS  278 (417)
T ss_pred             HHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhc-CCCC-cceeEEEcc-HHHHHHHHhccceee
Confidence            77889999999999999999876532    1111 22 24889999996 4444 678888887 47777777765433 


Q ss_pred             --CCCCChHHHHHHHh--chhhHHHHHHH--HHHHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          185 --GSGLAPFDCWICLR--GVKTMALRVEK--QQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       185 --~~~~~~~~a~~~~~--~l~~~~~r~~~--~~~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                        ...+.|..+.-++.  .|..+.+.+-+  .+..++...+.|+. +|..++..+                ++.|.|+..
T Consensus       279 Lap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iH----------------kpEGAIFlW  342 (417)
T COG3977         279 LAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIH----------------KPEGAIFLW  342 (417)
T ss_pred             ecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeee----------------cCCcceeeh
Confidence              24455544432221  12222222111  11222222233322 222222221                225666544


Q ss_pred             e-eCCH-HHHHHHHccCCcceeecccCCcccce-eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCH--HHHHHHHHH
Q 019543          258 L-TGSL-ALSKHVVETTKYFSITVSFGSVKSLI-SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV--NDLISDLDK  332 (339)
Q Consensus       258 ~-~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~-~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~--~~li~~l~~  332 (339)
                      . +.+. -...+++++|+..|+.+-.|..+=.- ...++               =....+|+|...++.  +.=+..|.+
T Consensus       343 LWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewp---------------H~hqC~Rmn~~~~~~~ie~Gva~lae  407 (417)
T COG3977         343 LWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWP---------------HTHQCMRMNYVPEPEKIEKGVAILAE  407 (417)
T ss_pred             hhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCC---------------CccceEEEecCCCHHHHHHHHHHHHH
Confidence            3 4443 34578999999999988777543211 11111               134579999976653  333444544


Q ss_pred             HHh
Q 019543          333 ALR  335 (339)
Q Consensus       333 al~  335 (339)
                      +++
T Consensus       408 ~ve  410 (417)
T COG3977         408 EVE  410 (417)
T ss_pred             HHH
Confidence            443

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.85  E-value=2.2e-07  Score=84.09  Aligned_cols=237  Identities=18%  Similarity=0.179  Sum_probs=135.8

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHH-HHh--cCCCCEEEEcCCCccc--------hHHHHH-----------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAV-THL--LGTGEEIVAGDDLYGG--------TDRLLS-----------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~i-l~l--l~~GD~Vi~~~~~y~~--------~~~~~~-----------  111 (339)
                      .-+.|-.+||-+.|+.  +++++.|-+..++.+ .+.  .++|+.||++.-..++        ...+..           
T Consensus        77 lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P  156 (407)
T COG3844          77 LPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAP  156 (407)
T ss_pred             chhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeCh
Confidence            3467788888899875  455544444444433 333  4469999997642111        111100           


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                   .+|.++||+||++++.|=+|+.|... +-...|+|+.|++..||++|..+.
T Consensus       157 ~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGa  236 (407)
T COG3844         157 RALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGA  236 (407)
T ss_pred             HHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCC
Confidence                                         99999999999999999999998763 233568999999999999866556


Q ss_pred             eEEEEEEcChhHHHHHHH-------------H----------HHhcCCCCChHHHHHHHhchhh-----HHHHHHHHHHH
Q 019543          162 MAGVLAVKGERLAKELYF-------------L----------QNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDN  213 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~-------------~----------~~~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~  213 (339)
                      .+|..+.++  ..++...             +          +++.....+-...+.+..+|+-     +.+.+++-...
T Consensus       237 pa~l~v~~~--h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaL  314 (407)
T COG3844         237 PAGLFVAPR--HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLAL  314 (407)
T ss_pred             ceeEEeccc--cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHH
Confidence            666555432  2222110             0          0111122222233333334443     34445555566


Q ss_pred             HHHHHHHHhCCCC---ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceec
Q 019543          214 AQKIAEFLASHPR---VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       214 a~~l~~~L~~~~~---i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      +.++.+.++.+..   .+ +.-|     ..|       .-.|+.+|+......   ++.+.|-..|+.   |++    . 
T Consensus       315 Td~fieLvEa~~~~~~l~-l~tP-----r~~-------~~rGsqvS~~hp~~~---~V~qaLi~rGVi---gD~----R-  370 (407)
T COG3844         315 TDYFIELVEARCEYYGLT-LVTP-----RAH-------EERGSQVSLYHPHGY---QVMQALIDRGVI---GDF----R-  370 (407)
T ss_pred             HHHHHHHHHhccccCCcE-Eecc-----chh-------hhccceeeEecCcHH---HHHHHHHHcCcc---ccc----c-
Confidence            6777776665422   11 1122     112       126788999886443   455556566663   442    1 


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEec-----cCCHHHHHHHHHHHHhcC
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRTG  337 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg-----~e~~~~li~~l~~al~~~  337 (339)
                                         .++.|||.+.     .+|.=+-++.|.++|+++
T Consensus       371 -------------------~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         371 -------------------EPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             -------------------CCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence                               2367888775     345545566677777653

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.84  E-value=4e-07  Score=89.24  Aligned_cols=175  Identities=15%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG  185 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~  185 (339)
                      ++|.++|++||+++|.||++. .|-.+.     ......||++  ++|.+++.  .-.|.++.++ ++ +.+.......+
T Consensus       249 ~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~gG--~Pi~av~~~~-~~-~~~~~~~~~~T  322 (459)
T PRK06931        249 QKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGGG--LPLAVLGIKK-EF-DAWQPGGHTGT  322 (459)
T ss_pred             HHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccCC--cceeeeeeHH-HH-hhccCCCCCCC
Confidence            999999999999999999973 332221     1233458876  59999863  3345566553 33 33321111123


Q ss_pred             CCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee
Q 019543          186 SGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT  259 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~  259 (339)
                      ..-+|+.+++++..|+.+..  ..++.++..+++.+.|+.    +|.|..                  .+|.|.++.+++
T Consensus       323 ~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~------------------vrG~Glm~giel  384 (459)
T PRK06931        323 FRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN------------------VRGRGLMIGIEI  384 (459)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe------------------EecCceEEEEEE
Confidence            45578888877777776532  234444445555555543    332222                  245778888887


Q ss_pred             C-C-------------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          260 G-S-------------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       260 ~-~-------------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                      . +             ...+.++.+.+...|+.+..++                         ...+.+|+.+-+..+++
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-------------------------~~~~~l~~~Ppl~it~~  439 (459)
T PRK06931        385 VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGG-------------------------RNGNVVRLLPPLLITQA  439 (459)
T ss_pred             ccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecC-------------------------CCCCEEEEECCCCcCHH
Confidence            3 2             1223455555555555432110                         12356888877655555


Q ss_pred             HHHHHHHHHh
Q 019543          326 LISDLDKALR  335 (339)
Q Consensus       326 li~~l~~al~  335 (339)
                      .|+.+.++|+
T Consensus       440 eid~~~~~l~  449 (459)
T PRK06931        440 ECEEFIDRFE  449 (459)
T ss_pred             HHHHHHHHHH
Confidence            5554444443

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.84  E-value=4.1e-07  Score=89.32  Aligned_cols=129  Identities=14%  Similarity=0.169  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      ++|.++|++||+++|.||++ +.|-.+.     ......|+++.  +|.++|. -.-.|.+++++ ++.+.+..-     
T Consensus       239 ~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG-~~Pi~av~~~~-ei~~~~~~~~~~~~  314 (466)
T PRK07030        239 KLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCL--SKALTGG-YLPLAAVLTTD-TVYQAFYDDYPTLR  314 (466)
T ss_pred             HHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEee--ehhccCC-cccceEEEecH-HHHHHHhccccccc
Confidence            89999999999999999997 3332222     12334588874  9999953 11245565654 566555310     


Q ss_pred             --HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          181 --QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       181 --~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                        ....+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.+..     +|.+.          ..+|.|.++.
T Consensus       315 ~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~-----~~~v~----------~vrG~Gl~~g  379 (466)
T PRK07030        315 AFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLAD-----HPHVA----------EVRQTGMILA  379 (466)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-----CCCEE----------EeEeceeEEE
Confidence              1112334578888877777776633  234445556666666654311     22110          0245678888


Q ss_pred             Eee
Q 019543          257 FLT  259 (339)
Q Consensus       257 ~~~  259 (339)
                      |++
T Consensus       380 ie~  382 (466)
T PRK07030        380 IEM  382 (466)
T ss_pred             EEe
Confidence            876

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.83  E-value=2.1e-07  Score=96.64  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHh-c-------CCCCEEEEcCCCccchHH-----------------
Q 019543           56 TRDALESLLAKLDKADRALCFTSG-MAALAA-VTHL-L-------GTGEEIVAGDDLYGGTDR-----------------  108 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~l-l-------~~GD~Vi~~~~~y~~~~~-----------------  108 (339)
                      ...++++.|+++.|-+.+-++++| .+|..+ +++. .       ...+.|+++...++....                 
T Consensus       531 ~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~  610 (939)
T TIGR00461       531 LIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQD  610 (939)
T ss_pred             HHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCC
Confidence            356899999999998865555554 556552 3221 1       123578887765532211                 


Q ss_pred             ----------HHH------------------------HHHHHHHHHcCCEEEEeCCcCCC--CCcCcccCCCeEEEeccc
Q 019543          109 ----------LLS------------------------RKIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSAT  152 (339)
Q Consensus       109 ----------~~~------------------------~~I~~la~~~g~~livD~a~a~g--~~~~~~~~~~Di~~~S~s  152 (339)
                                .+.                        ++|+++||++|.++++|.++..+  ...++-..|+|++++|.+
T Consensus       611 G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~H  690 (939)
T TIGR00461       611 GNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLH  690 (939)
T ss_pred             CCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCC
Confidence                      110                        88999999999999999999542  334556689999999999


Q ss_pred             cccccC---CCceEEEEEEcChhHHHHHHHH--H---------HhcCC----CCCh----HHHHHHH--hchhhHHHHHH
Q 019543          153 KFIAGH---SDVMAGVLAVKGERLAKELYFL--Q---------NAEGS----GLAP----FDCWICL--RGVKTMALRVE  208 (339)
Q Consensus       153 K~l~g~---~~~~gG~v~~~~~~l~~~l~~~--~---------~~~~~----~~~~----~~a~~~~--~~l~~~~~r~~  208 (339)
                      |+|++|   |+...|++++++ .+...+...  .         ...+.    ....    ..+|+-+  .+-+-+.+..+
T Consensus       691 Ktf~~P~G~GGPg~G~i~vr~-~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~  769 (939)
T TIGR00461       691 KTFCIPHGGGGPGMGPIGVKS-HLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASV  769 (939)
T ss_pred             ccCCCCCCCCCCCeEEEEEhh-hchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHH
Confidence            988844   333458898874 343332200  0         00111    1111    2222222  22234455555


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 019543          209 KQQDNAQKIAEFLASHP  225 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~  225 (339)
                      ....|+.++++.|++..
T Consensus       770 ~ailnAnYl~~rL~~~~  786 (939)
T TIGR00461       770 VAILNANYMATRLKDHY  786 (939)
T ss_pred             HHHHHHHHHHHHhhccC
Confidence            56678999999998743

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.83  E-value=1.2e-07  Score=90.65  Aligned_cols=179  Identities=17%  Similarity=0.217  Sum_probs=111.9

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-H---
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-Q---  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~---  181 (339)
                      +++.++|++||+++|.||+. ++|-.+..+     ....||++  ++|.+++.--.+++.+ +++ ++.+.+..- .   
T Consensus       239 ~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY~Pl~a~l-~~~-~I~~~~~~~~~~~f  314 (449)
T COG0161         239 KRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGYLPLSAVL-TSD-RIYEAFSDGDAGAF  314 (449)
T ss_pred             HHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccchhhHhHh-hhH-HHHHHHhcccCCee
Confidence            99999999999999999975 444333322     22348877  5899986433444444 443 566655442 1   


Q ss_pred             -HhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC-C---CCceEEecCCCCCCCchHhHhhhcCCCcce
Q 019543          182 -NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS-H---PRVKKVNYAGLPEHPGHELHYSQAKGAGSV  254 (339)
Q Consensus       182 -~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~-~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~i  254 (339)
                       ..++.+-+|+.+++++..|+-++  ..+++..+...++.+.|+. +   |.|-.|                  ++.|-+
T Consensus       315 ~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV------------------R~~Gli  376 (449)
T COG0161         315 MHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDV------------------RGLGLI  376 (449)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEe------------------eccceE
Confidence             12345668999999988888764  2355555667777777765 2   233222                  345667


Q ss_pred             EEEee-CCHH--------HHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          255 LSFLT-GSLA--------LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       255 vs~~~-~~~~--------~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                      ..+++ .+..        ...++.+...+.|+.++..+. .+...|                       -+.++.|+.++
T Consensus       377 ~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~-~i~~~P-----------------------Pliit~~eid~  432 (449)
T COG0161         377 GAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGD-VIYLMP-----------------------PLIITREEIDE  432 (449)
T ss_pred             EEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecCC-EEEEcC-----------------------CccCCHHHHHH
Confidence            77775 2221        245666667777888885443 111222                       13566677888


Q ss_pred             HHHHHHHHHhc
Q 019543          326 LISDLDKALRT  336 (339)
Q Consensus       326 li~~l~~al~~  336 (339)
                      +++.+.++|+.
T Consensus       433 l~~~l~~al~~  443 (449)
T COG0161         433 LVDALREALDE  443 (449)
T ss_pred             HHHHHHHHHHH
Confidence            89999888874

>PLN02452 phosphoserine transaminase

Probab=98.79  E-value=3.2e-07  Score=87.19  Aligned_cols=235  Identities=11%  Similarity=0.057  Sum_probs=135.8

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHH---------------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDR---------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~---------------------  108 (339)
                      ...++.++.|.++++.+   +++++ .||+.++.+ ++.++.+||.+++-..-+.+-+.                     
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~  131 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKY  131 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCC
Confidence            46788999999999863   35555 566888875 55699999988775432222110                     


Q ss_pred             -----H--HH---------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCC
Q 019543          109 -----L--LS---------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHS  159 (339)
Q Consensus       109 -----~--~~---------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~  159 (339)
                           .  ++                     ..+-+++   ++++++|.+.+.|.. .+.-.+++|  ..|.+|++|.+|
T Consensus       132 ~~~~~~~~~~~~~~~~~v~~~hnETstGv~~~~~~~i~---~~~lvVDa~Ss~g~~pidv~~~~v~--~~saqK~lGP~G  206 (365)
T PLN02452        132 TKIPSVSEWELTPDAKFVHICANETIHGVEFKDYPDVG---NVPLVADMSSNFLSKPVDVSKYGVI--YAGAQKNVGPSG  206 (365)
T ss_pred             CCCCChHHcCCCCCCcEEEECCCCCCCcEecCcccccC---CCeEEEECCccccCcccCHHHcCEE--EEecccccCCCC
Confidence                 0  00                     1122221   378888888776643 222334444  469999997443


Q ss_pred             CceEEEEEEcChhHHHHHHHH-------HH---hcC-CCCChHHHH-H---HHhchh---hHHHHHHHHHHHHHHHHHHH
Q 019543          160 DVMAGVLAVKGERLAKELYFL-------QN---AEG-SGLAPFDCW-I---CLRGVK---TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~-------~~---~~~-~~~~~~~a~-~---~~~~l~---~~~~r~~~~~~~a~~l~~~L  221 (339)
                         .|+++.++ ++.+++...       ..   ... ...+|.... .   ++..++   .++.+.++.+++++++.++|
T Consensus       207 ---l~~v~vr~-~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l  282 (365)
T PLN02452        207 ---VTIVIIRK-DLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAI  282 (365)
T ss_pred             ---eEEEEEcH-HHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence               36777765 455443211       10   001 122333222 2   222232   25667777788899999999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      ++.+++   +.+..  ++.+       + ...+++|.+.+.+...+|.+.++..|+..=-|             |+.   
T Consensus       283 ~~~~G~---y~~~~--~~~~-------r-s~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G-------------~r~---  333 (365)
T PLN02452        283 DESNGF---YVCPV--EKSV-------R-SLMNVPFTLGGSELEAEFVKEAAKAGMVQLKG-------------HRS---  333 (365)
T ss_pred             HhCCCc---ccCCC--ChHH-------h-CCeEEEEEcCCchhHHHHHHHHHHCCCcccCC-------------ccc---
Confidence            987765   11111  1110       1 24589999876656678999998877643222             111   


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             +. + +|+|+--+-+.+-++.|.+++++
T Consensus       334 -------~g-g-~R~s~yna~~~~~v~~L~~~m~~  359 (365)
T PLN02452        334 -------VG-G-MRASIYNAMPLAGVEKLVAFMKD  359 (365)
T ss_pred             -------cC-c-eEEECcCCCCHHHHHHHHHHHHH
Confidence                   12 3 99999766666666666666654

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.76  E-value=1.2e-06  Score=86.05  Aligned_cols=175  Identities=17%  Similarity=0.200  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----  180 (339)
                      +++.++|++||+++|.||++ +.|-.+.     ......||++.  +|.++|.--.++ .+++++ ++.+.+...     
T Consensus       261 ~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~gG~~Pla-av~~~~-ei~~~~~~~~~~~~  336 (472)
T PRK08742        261 RRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCL--SKGLTGGFLPLS-AVLATQ-QLYDAFLDDSRERA  336 (472)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEE--cccccCCCCCcc-eeeccH-HHHHHhhccCccCc
Confidence            99999999999999999997 3432221     12234588874  999985311244 454553 565554311     


Q ss_pred             -HHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHh---CCCCceEEecCCCCCCCchHhHhhhcCCCcce
Q 019543          181 -QNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLA---SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV  254 (339)
Q Consensus       181 -~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~---~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~i  254 (339)
                       ....+..-+|+.+++++..|+.+.+  ..++..+..+++.+.++   +++.|..                  .+|.|.+
T Consensus       337 ~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~d------------------vRG~Gl~  398 (472)
T PRK08742        337 FLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVAD------------------VRQAGMV  398 (472)
T ss_pred             cCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeee------------------EeccceE
Confidence             0112234578887777777766532  12233333344443333   3332222                  2457788


Q ss_pred             EEEeeC-CH----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc---
Q 019543          255 LSFLTG-SL----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---  320 (339)
Q Consensus       255 vs~~~~-~~----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~---  320 (339)
                      +.|++. +.          ..+.++.+.+.+.|+.+..                            ..+.|||..-+   
T Consensus       399 ~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~----------------------------~g~vi~~~PpL~it  450 (472)
T PRK08742        399 VAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRP----------------------------LGDVLYWMPPYCVD  450 (472)
T ss_pred             EEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEe----------------------------cCCEEEEECCCCCC
Confidence            888762 11          1124455555555654321                            11457777644   


Q ss_pred             -CCHHHHHHHHHHHHhc
Q 019543          321 -EDVNDLISDLDKALRT  336 (339)
Q Consensus       321 -e~~~~li~~l~~al~~  336 (339)
                       ++.+++++.|.++|++
T Consensus       451 ~~ei~~~~~~l~~~l~~  467 (472)
T PRK08742        451 EAQLALLADTTRHAIDE  467 (472)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             5566667777777654

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.74  E-value=3.7e-07  Score=88.84  Aligned_cols=106  Identities=14%  Similarity=0.158  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc------ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHH--HHHH--H
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE--LYFL--Q  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~--l~~~--~  181 (339)
                      ++|.++|++||+++|+||+| +|+....      .....|+  .+++|.+++.  ..+|++++++ ++.+.  +...  .
T Consensus       207 ~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi--~t~gK~lggG--~p~~av~~~~-~i~~~~~~~~~~~~  280 (431)
T PRK06209        207 HEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDL--SCFGKALGNG--FAVSALAGKR-EYMELGGLEHTDRE  280 (431)
T ss_pred             HHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcce--eeehhhhcCC--cccEEEEEHH-HHHhhhcccccCCC
Confidence            89999999999999999998 5542211      1223476  5579999962  4567787764 56654  2110  1


Q ss_pred             H--hcCCC--CChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC
Q 019543          182 N--AEGSG--LAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       182 ~--~~~~~--~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~  223 (339)
                      +  .++++  .+|..++.++..|+.+.  ...++.+++.+++.+.|++
T Consensus       281 ~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~  328 (431)
T PRK06209        281 RVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNE  328 (431)
T ss_pred             CceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            1  13333  34577766766666653  2355556666677776654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.73  E-value=1.5e-07  Score=88.83  Aligned_cols=167  Identities=21%  Similarity=0.266  Sum_probs=104.8

Q ss_pred             CCCCchHHHHHHHHHhHh--CCCeEEEcCcHHHHHHHHHH--h------c-CCCCEEEEcCCCccchH------------
Q 019543           51 RSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAVTH--L------L-GTGEEIVAGDDLYGGTD------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~--g~~~~l~~~sG~~A~~~il~--l------l-~~GD~Vi~~~~~y~~~~------------  107 (339)
                      ...++...+|.++|.+..  +.+.+..++||++|+...+.  .      . .....|++-...|+|..            
T Consensus        55 ~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~  134 (339)
T PF00202_consen   55 GFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPY  134 (339)
T ss_dssp             TSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHH
T ss_pred             ceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccc
Confidence            345678889999999998  45678899999999975433  2      1 23467888776666521            


Q ss_pred             --------------------H-------------HHH-----------------------------HHHHHHHHHcCCEE
Q 019543          108 --------------------R-------------LLS-----------------------------RKIAEMAHAHGALL  125 (339)
Q Consensus       108 --------------------~-------------~~~-----------------------------~~I~~la~~~g~~l  125 (339)
                                          .             .+.                             ++|.++|++||+++
T Consensus       135 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gill  214 (339)
T PF00202_consen  135 RKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILL  214 (339)
T ss_dssp             HTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EE
T ss_pred             cccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccce
Confidence                                1             000                             99999999999999


Q ss_pred             EEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc
Q 019543          126 LVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       126 ivD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~  199 (339)
                      |+||++. .|-.+..     .....|+++.  +|.+++.  ...|.+++++ ++.+.+.......+..-+|+.++++...
T Consensus       215 I~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~gG--~p~sav~~~~-~i~~~~~~~~~~~T~~g~p~~~aaa~~~  289 (339)
T PF00202_consen  215 IADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGGG--LPISAVLGSE-EIMEAFQPGSHGSTFGGNPLSCAAALAT  289 (339)
T ss_dssp             EEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGTT--SSEEEEEEEH-HHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred             ecccccccccccCCccceecccccCccccc--ccchhhh--hhcccccccc-hhhccccccccccccccchHhhhhhhhH
Confidence            9999984 3322221     2345699886  6999974  4455666664 5555442222122344568877777777


Q ss_pred             hhhHHHH--HHHHHHHHHHHHHHHh
Q 019543          200 VKTMALR--VEKQQDNAQKIAEFLA  222 (339)
Q Consensus       200 l~~~~~r--~~~~~~~a~~l~~~L~  222 (339)
                      |+.+++.  .++.++..+++.+.|+
T Consensus       290 l~~~~~~~~~~~~~~~g~~l~~~L~  314 (339)
T PF00202_consen  290 LEILEEEDLLERVRELGERLREGLR  314 (339)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHH
Confidence            7665432  4444455555555554

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=98.72  E-value=5.3e-07  Score=91.41  Aligned_cols=166  Identities=10%  Similarity=0.023  Sum_probs=100.4

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccchHH------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDR------------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~------------------------  108 (339)
                      ....+.|+..|+.||++++.++.+| +.+|.+ ++++++|||.|+++++.+-....                        
T Consensus       195 G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~  274 (713)
T PRK15399        195 GPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGG  274 (713)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCC
Confidence            4578999999999999999998888 566764 56689999999998874321111                        


Q ss_pred             -------------HHH-------------------------HHHHHHHHHcCCEE-EEeCCcCCCCCcC-------cccC
Q 019543          109 -------------LLS-------------------------RKIAEMAHAHGALL-LVDNSIMSPVLSR-------PLEL  142 (339)
Q Consensus       109 -------------~~~-------------------------~~I~~la~~~g~~l-ivD~a~a~g~~~~-------~~~~  142 (339)
                                   .+.                         ++|.++|   |+.+ ++|+||+....+.       ++..
T Consensus       275 I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~  351 (713)
T PRK15399        275 IPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSG  351 (713)
T ss_pred             CChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhC
Confidence                         010                         5666666   7877 5999997543211       1212


Q ss_pred             --CCeEE---EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCCh-HHHHH--HHhchhh--HHHHHHHHH
Q 019543          143 --GADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAP-FDCWI--CLRGVKT--MALRVEKQQ  211 (339)
Q Consensus       143 --~~Di~---~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~-~~a~~--~~~~l~~--~~~r~~~~~  211 (339)
                        ++|.+   +.|.||.+++.  .++.+|..+..--.+++...-.++. ++.+- +.|.+  +.+.++.  -....++..
T Consensus       352 ~~~aD~~i~~tQStHKtL~al--TQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i  429 (713)
T PRK15399        352 ERVPGKVIFETQSTHKMLAAF--SQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSV  429 (713)
T ss_pred             CCCCCeeeeeeeehhcccccc--chheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence              46766   99999999965  5778888765311234444433333 33222 22211  1222221  122344445


Q ss_pred             HHHHHHHHHHhCCC
Q 019543          212 DNAQKIAEFLASHP  225 (339)
Q Consensus       212 ~~a~~l~~~L~~~~  225 (339)
                      +.+..+++.+.+.+
T Consensus       430 ~~a~~fR~~l~~~~  443 (713)
T PRK15399        430 ERALHFRKEVQRLR  443 (713)
T ss_pred             HHHHHHHHHHHhcc
Confidence            55666666666544

>PRK07483 hypothetical protein; Provisional

Probab=98.72  E-value=1.5e-06  Score=84.87  Aligned_cols=183  Identities=15%  Similarity=0.174  Sum_probs=103.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~----  181 (339)
                      ++|.++|++||+++|+||++. .|-.+.     -.....||++  ++|.+++. -.-.|.+++++ ++.+.+..-.    
T Consensus       224 ~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~-~i~~~~~~~~~~~~  299 (443)
T PRK07483        224 KRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGAG-YQPIGAVLASD-RIYDAIADGSGFFQ  299 (443)
T ss_pred             HHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhccC-ccccEEEEEcH-HHHHHHhcCCCccc
Confidence            899999999999999999973 332221     1223458777  49999853 11245555654 5655553211    


Q ss_pred             HhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceE
Q 019543          182 NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  255 (339)
Q Consensus       182 ~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~iv  255 (339)
                      ...+..-+|+.+++++..|+.+++  ..++.++..+++.+.|++    ++.|..                  .+|.|.++
T Consensus       300 h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~------------------vRG~Glm~  361 (443)
T PRK07483        300 HGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD------------------IRGRGLFV  361 (443)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee------------------EeecccEE
Confidence            112344578887777777776532  244445556666666653    332222                  24577888


Q ss_pred             EEeeCCH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec----c
Q 019543          256 SFLTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG----I  320 (339)
Q Consensus       256 s~~~~~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg----~  320 (339)
                      .+++...           .....+.+.+...|+.+...+       ..+             .|...+.|||..-    .
T Consensus       362 gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-------~~~-------------~~~~~~~l~~~PpL~it~  421 (443)
T PRK07483        362 GVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMG-------GTI-------------DGVRGDHVLLAPPFIITA  421 (443)
T ss_pred             EEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecC-------ccc-------------cCCCCCEEEEECCCCCCH
Confidence            8876211           123456666666666543110       000             0011356887664    4


Q ss_pred             CCHHHHHHHHHHHHhc
Q 019543          321 EDVNDLISDLDKALRT  336 (339)
Q Consensus       321 e~~~~li~~l~~al~~  336 (339)
                      ++.++.++.|.++|++
T Consensus       422 ~eid~~~~~l~~~l~~  437 (443)
T PRK07483        422 AQIDEIVERLGDAIDA  437 (443)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5566666666666653

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=98.72  E-value=1.6e-07  Score=95.07  Aligned_cols=168  Identities=13%  Similarity=0.066  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccchHH------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGTDR------------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~------------------------  108 (339)
                      ....+.|+..|+.+|++++.++.+| +.+|.+ ++++++|||.|+++++.+-....                        
T Consensus       195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~  274 (714)
T PRK15400        195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGG  274 (714)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccC
Confidence            4578999999999999999998888 567765 55689999999998874321111                        


Q ss_pred             ---------H----HH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-------CcccCC
Q 019543          109 ---------L----LS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-------RPLELG  143 (339)
Q Consensus       109 ---------~----~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~-------~~~~~~  143 (339)
                               .    +.                         +.|.++|+.++  |++|+||+....+       .++..+
T Consensus       275 I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~g  352 (714)
T PRK15400        275 IPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGG  352 (714)
T ss_pred             CCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcC
Confidence                     0    10                         88999998887  7999999754321       122345


Q ss_pred             C---e--EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCC-hHHHH--HHHhchhh--HHHHHHHHHH
Q 019543          144 A---D--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLA-PFDCW--ICLRGVKT--MALRVEKQQD  212 (339)
Q Consensus       144 ~---D--i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~-~~~a~--~~~~~l~~--~~~r~~~~~~  212 (339)
                      +   |  +++.|.+|.+++.  .++.+|..+..--.+++...-.++. ++.+ ++.|.  .+.+.++.  -....++..+
T Consensus       353 a~~~~~i~vtQStHKtL~al--TQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~  430 (714)
T PRK15400        353 RVEGKVIYETQSTHKLLAAF--SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIE  430 (714)
T ss_pred             CCCCCceEEEEchhhcccch--hHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            5   5  9999999999965  4566665544211234444333333 3322 22221  11222221  1233445556


Q ss_pred             HHHHHHHHHhCCCC
Q 019543          213 NAQKIAEFLASHPR  226 (339)
Q Consensus       213 ~a~~l~~~L~~~~~  226 (339)
                      .+..+++.+.++++
T Consensus       431 ~a~~~R~~l~~~~~  444 (714)
T PRK15400        431 RAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHhCCC
Confidence            66677777766554

>PLN02263 serine decarboxylase

Probab=98.70  E-value=8.5e-06  Score=79.24  Aligned_cols=173  Identities=16%  Similarity=0.125  Sum_probs=108.5

Q ss_pred             HHHHHHH----HHhHhCCC----eEEEcCcHHHHHH-HHHH--hcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           57 RDALESL----LAKLDKAD----RALCFTSGMAALA-AVTH--LLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        57 ~~~le~~----la~~~g~~----~~l~~~sG~~A~~-~il~--ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ..++|+.    +++++|.+    ...++++|++||. +++.  -..+...|++++..+........              
T Consensus       131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~  210 (470)
T PLN02263        131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLVS  210 (470)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCCC
Confidence            5667765    45666643    2678888899986 3332  22344467777665433322111              


Q ss_pred             -------------------------------------HHHHHHHHHcCC-----EEEEeCCcCCCCC--c-C--cc--cC
Q 019543          112 -------------------------------------RKIAEMAHAHGA-----LLLVDNSIMSPVL--S-R--PL--EL  142 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~-----~livD~a~a~g~~--~-~--~~--~~  142 (339)
                                                           ++|.++|++||+     ++.||+|++....  . .  .+  ..
T Consensus       211 g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~  290 (470)
T PLN02263        211 GEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK  290 (470)
T ss_pred             CcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCc
Confidence                                                 999999999997     9999999975432  1 1  11  12


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--------cCCCC--ChHHHHHHHh--chhhHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------EGSGL--APFDCWICLR--GVKTMALRVEKQ  210 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------~~~~~--~~~~a~~~~~--~l~~~~~r~~~~  210 (339)
                      .+|-++.+.+|+++.|  ...|+++.++ ...+.+.....+        .|+.-  .++..|..++  +.+.+.++.++.
T Consensus       291 ~vDSIsvD~HK~l~~P--~~cgvll~R~-~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~  367 (470)
T PLN02263        291 PIGSVSVSGHKFVGCP--MPCGVQITRM-EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKC  367 (470)
T ss_pred             CccEEEECCccccCCC--cCEEEEEEeh-hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            3788889999999966  4467888875 333322211111        12221  2344554443  556788899999


Q ss_pred             HHHHHHHHHHHhCCCCceEEecC
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                      .++++++.+.|++. ++..+..|
T Consensus       368 ~~~A~~l~~~l~~~-g~~~~~~p  389 (470)
T PLN02263        368 LRNAHYLKDRLREA-GISAMLNE  389 (470)
T ss_pred             HHHHHHHHHHHHhC-CCeEEeCC
Confidence            99999999999987 44444434

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.67  E-value=1.1e-06  Score=81.36  Aligned_cols=153  Identities=17%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC--cc-cC--CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hhc
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR--PL-EL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAE  184 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~--~~-~~--~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~~  184 (339)
                      ++..++|+++|.+.|.||++. +|-.+.  .. ..  -.||+  |+.|.+|.. -.+| .+++.+ ++.+-+.+.. .+.
T Consensus       236 ka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGnG-~Pl~-AVvtt~-EIa~v~~~~~~~fn  310 (442)
T KOG1404|consen  236 KAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGNG-FPLG-AVVTTP-EIADVLNQKSSHFN  310 (442)
T ss_pred             HHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHH--HHHhhccCC-Ccce-eeecCH-HHHHHHHhcccccc
Confidence            999999999999999999983 332211  11 11  22554  689999954 3444 555554 5666555443 234


Q ss_pred             CCCCChHHHHHHHhchhhHHHH-HH-HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CC
Q 019543          185 GSGLAPFDCWICLRGVKTMALR-VE-KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GS  261 (339)
Q Consensus       185 ~~~~~~~~a~~~~~~l~~~~~r-~~-~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~  261 (339)
                      +..-+|..++.++..|+-+.++ ++ ...+-..++.+.|..+..    .+|-+.+          .+|.|-++-+++ .+
T Consensus       311 TyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d----~h~iIGd----------VRG~GLm~GvE~V~d  376 (442)
T KOG1404|consen  311 TYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKD----KHPIIGD----------VRGRGLMLGVELVSD  376 (442)
T ss_pred             ccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----cCCceee----------cccceeEEEEEEecc
Confidence            5566788888887777665322 11 122234455555544321    1121110          256788888875 33


Q ss_pred             H--------HHHHHHHccCCcceeecccCC
Q 019543          262 L--------ALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       262 ~--------~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      .        .....+.+.+++.|+.|.-|+
T Consensus       377 k~~~~pp~~~~~~~i~~~cke~Gvlvg~g~  406 (442)
T KOG1404|consen  377 KSEPKPPATAEGAVIGEQCKELGVLVGKGG  406 (442)
T ss_pred             cCCCCCcchHHHHHHHHHHHHhCeeeeccc
Confidence            2        123456677888888886665

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=98.63  E-value=8.3e-07  Score=86.83  Aligned_cols=114  Identities=25%  Similarity=0.326  Sum_probs=87.1

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcHH-HHHHH-HHHhcCCCCEEEEcCCCccchHH------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGTDR------------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG~-~A~~~-il~ll~~GD~Vi~~~~~y~~~~~------------------------  108 (339)
                      ....+.|+..|+.+|+++..+..+|+ .||.+ ++++++|||.|+++++..-....                        
T Consensus        70 G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~g  149 (557)
T COG1982          70 GPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIG  149 (557)
T ss_pred             ccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccC
Confidence            35789999999999999999888885 67764 66799999999999875322111                        


Q ss_pred             -----HHH---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----C-cccCCCeEEEec
Q 019543          109 -----LLS---------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----R-PLELGADIVMHS  150 (339)
Q Consensus       109 -----~~~---------------------------~~I~~la~~~g~~livD~a~a~g~~~-----~-~~~~~~Di~~~S  150 (339)
                           .++                           ++|.+.++++++++.+|++|+.....     . ....++|+++.|
T Consensus       150 gI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS  229 (557)
T COG1982         150 GIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQS  229 (557)
T ss_pred             CCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEec
Confidence                 000                           99999999999999999999764321     1 123578999999


Q ss_pred             cccccccCCCceEEEEEEcC
Q 019543          151 ATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~  170 (339)
                      .+|.+++.  .++.+|..++
T Consensus       230 ~HK~l~al--SQaS~iHv~~  247 (557)
T COG1982         230 THKLLAAL--SQASMIHVKD  247 (557)
T ss_pred             hhhhhhhh--hhhHHHhhCC
Confidence            99999954  5677777664

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=98.63  E-value=9.2e-06  Score=73.29  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhHhCCC---eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCC-CccchH------------------------
Q 019543           57 RDALESLLAKLDKAD---RALCFTSGMAALAAV-THLLGTGEEIVAGDD-LYGGTD------------------------  107 (339)
Q Consensus        57 ~~~le~~la~~~g~~---~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~-~y~~~~------------------------  107 (339)
                      .+++.+-+...|...   .-++-.||+.+..+. ..++.|||.|++-.. +|+--.                        
T Consensus        52 m~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~l  131 (385)
T KOG2862|consen   52 MDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPL  131 (385)
T ss_pred             HHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccH
Confidence            345555566666543   234456788999754 458999999988543 111100                        


Q ss_pred             HHHH---------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCC
Q 019543          108 RLLS---------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHS  159 (339)
Q Consensus       108 ~~~~---------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~  159 (339)
                      ..+.                           +.+-++||+|++.++||.+.+.|.. +.--++++|+......|++++|.
T Consensus       132 e~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~  211 (385)
T KOG2862|consen  132 EEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPA  211 (385)
T ss_pred             HHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCC
Confidence            0000                           6778999999999999999876643 33446899999988999999886


Q ss_pred             CceEEEEEEcChhHHHHHHHHH--------------HhcCC--------CCChHH------HHHHHhchhhHHHHHHHHH
Q 019543          160 DVMAGVLAVKGERLAKELYFLQ--------------NAEGS--------GLAPFD------CWICLRGVKTMALRVEKQQ  211 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~--------------~~~~~--------~~~~~~------a~~~~~~l~~~~~r~~~~~  211 (339)
                      +.  +.|+.++ ...++++...              ++++.        ..+|..      +++.+..=+-++.+.++++
T Consensus       212 GL--siisfS~-ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~  288 (385)
T KOG2862|consen  212 GL--SIISFSD-KALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHR  288 (385)
T ss_pred             Cc--ceeecCH-HHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53  4565554 4445554322              11111        112221      2222222234677888899


Q ss_pred             HHHHHHHHHHhCCC
Q 019543          212 DNAQKIAEFLASHP  225 (339)
Q Consensus       212 ~~a~~l~~~L~~~~  225 (339)
                      ++++++...|+++.
T Consensus       289 e~s~~l~~~l~~~G  302 (385)
T KOG2862|consen  289 EMSKWLKLSLEALG  302 (385)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998763

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.63  E-value=1.7e-06  Score=84.37  Aligned_cols=131  Identities=21%  Similarity=0.255  Sum_probs=87.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCC--cCc-----cc-CCCeEEEeccccccccCCCceEEEEEEcChh-HHHHHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVL--SRP-----LE-LGADIVMHSATKFIAGHSDVMAGVLAVKGER-LAKELYFLQN  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~--~~~-----~~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l~~~l~~~~~  182 (339)
                      ++|.++|+++|+++.||+|+|..+.  .+.     .. .++|-++.+++|++..|  ..+|+++.++++ +.+.+.....
T Consensus       227 ~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP--~~~G~il~rd~e~l~~~~~~~~~  304 (460)
T COG0076         227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAP--IGCGVVLFRDEEALRRILIFADY  304 (460)
T ss_pred             HHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCC--CCceEEEEECHHHhhhhhhcccc
Confidence            9999999999999999999975543  111     11 16789999999998865  446788888763 3332221111


Q ss_pred             hcC-----------CCCC--hHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhh
Q 019543          183 AEG-----------SGLA--PFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  247 (339)
Q Consensus       183 ~~~-----------~~~~--~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~  247 (339)
                      +.+           +.+.  .+.+|..++  +.+.+.+..++..++++++++.|+..+..+.++-|              
T Consensus       305 yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p--------------  370 (460)
T COG0076         305 YLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP--------------  370 (460)
T ss_pred             cCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC--------------
Confidence            111           1111  122333333  34567777888889999999999998767666655              


Q ss_pred             cCCCcceEEEeeCC
Q 019543          248 AKGAGSVLSFLTGS  261 (339)
Q Consensus       248 ~~~~~~ivs~~~~~  261 (339)
                         ..++++|...+
T Consensus       371 ---~l~~V~fr~~~  381 (460)
T COG0076         371 ---ELPIVAFRLKD  381 (460)
T ss_pred             ---ccceEEEEcCC
Confidence               35789998744

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.59  E-value=3.4e-06  Score=76.53  Aligned_cols=208  Identities=16%  Similarity=0.230  Sum_probs=119.1

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc-------C--CCCE-EEEc-CCCccch-H-------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL-------G--TGEE-IVAG-DDLYGGT-D-------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll-------~--~GD~-Vi~~-~~~y~~~-~-------------  107 (339)
                      .+...-++++.+++++|.+..+-+++|-+|+...+-|.       +  |.|+ ++++ ...|+|- .             
T Consensus        99 Ynd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~  178 (427)
T KOG1402|consen   99 YNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWD  178 (427)
T ss_pred             hhhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhh
Confidence            34456788999999999999999999999987543322       2  5343 3332 2222210 0             


Q ss_pred             ------------------HHHH------------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcC
Q 019543          108 ------------------RLLS------------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSR  138 (339)
Q Consensus       108 ------------------~~~~------------------------------~~I~~la~~~g~~livD~a~a-~g~~~~  138 (339)
                                        ..++                              ++..+||+|||+++|.||.+. .+--++
T Consensus       179 ~fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk  258 (427)
T KOG1402|consen  179 GFGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK  258 (427)
T ss_pred             ccCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc
Confidence                              0111                              899999999999999999983 222222


Q ss_pred             cc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHHHHH
Q 019543          139 PL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQ  211 (339)
Q Consensus       139 ~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~  211 (339)
                      -+     ....|+++  +.|+|+|.--...++++ .+ +++..+..-..-.+..=+|+.++.+...|+-+.+  ..++..
T Consensus       259 ~la~d~env~PDivi--lgKalSGG~~Pvsavl~-~~-~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~  334 (427)
T KOG1402|consen  259 LLACDYENVRPDIVI--LGKALSGGVYPVSAVLA-DD-DIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAA  334 (427)
T ss_pred             EEEeehhhcCCCeEE--EeccccCCeeeeEEEEe-cH-HHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22     12458887  58999964333444443 33 4443332221112344578888777777776532  233333


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC----HHHHHHHHccCCccee
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYFSI  277 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~----~~~~~~~~~~L~~~~i  277 (339)
                      ..-..++..|+.++.    .+|..-         +..+|.|-+..+++..    ..++-.++-++++.|.
T Consensus       335 ~lG~~l~~~L~~l~~----~~p~~v---------~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~  391 (427)
T KOG1402|consen  335 KLGEILRDQLNKLQK----KFPHVV---------KEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGL  391 (427)
T ss_pred             HHHHHHHHHHHhccc----cccchh---------heeeccceEEEEEeccccccchhHHHHHHccccccc
Confidence            445556666666542    122110         0125677777777642    2345566666766544

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.51  E-value=4.7e-06  Score=86.89  Aligned_cols=233  Identities=18%  Similarity=0.229  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHH--hc-CCCCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTH--LL-GTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~--ll-~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..-+++..++++.|-+  ++-+...++++-.+ +++  .- +++++|++++..++.+..+++                  
T Consensus       110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~~~l  189 (939)
T TIGR00461       110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDCSDI  189 (939)
T ss_pred             HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcHHHH
Confidence            3457788899999977  55777888776653 333  22 235899999988887664433                  


Q ss_pred             -----------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcccCCCeEEEeccccccc--cCCCceEEE
Q 019543          112 -----------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIA--GHSDVMAGV  165 (339)
Q Consensus       112 -----------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~~~~~Di~~~S~sK~l~--g~~~~~gG~  165 (339)
                                             ++|.+++|++|++++++.-.. .+...+|-++|+||++++..+.-.  |.|+.-+|+
T Consensus       190 ~~~~~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~  269 (939)
T TIGR00461       190 KKAVDVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAF  269 (939)
T ss_pred             hhcCCEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCCCceee
Confidence                                   899999999999999976553 344556777899999886544321  112234789


Q ss_pred             EEEcChhHHHHHHHH--------------------HH-hc--CCCCChHHH---------H--HHHhchhhHHHHHHHHH
Q 019543          166 LAVKGERLAKELYFL--------------------QN-AE--GSGLAPFDC---------W--ICLRGVKTMALRVEKQQ  211 (339)
Q Consensus       166 v~~~~~~l~~~l~~~--------------------~~-~~--~~~~~~~~a---------~--~~~~~l~~~~~r~~~~~  211 (339)
                      +.+++ .+...+-..                    +. ..  --+.|.+..         +  +...+=+-+.+.-++..
T Consensus       270 ~a~~~-~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~  348 (939)
T TIGR00461       270 FAVKD-EYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIH  348 (939)
T ss_pred             eeecH-hhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            98875 454432110                    00 00  001111111         1  11112122333344455


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecc
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                      .++.++++.|++ .+++.+.-|                 +-..+.+.++. ..+.++.+++.+.|+.++.          
T Consensus       349 ~~a~~l~~~L~~-~G~~~~~~~-----------------fF~~~~v~~~~-~~~~~i~~~~~~~gi~l~~----------  399 (939)
T TIGR00461       349 SLTSILANGLEN-DPHELINKT-----------------WFDTLTVKVGN-GISSELLKAAEEFNINLRA----------  399 (939)
T ss_pred             HHHHHHHHHHHh-CCCcccCCC-----------------ccceEEEEeCC-CCHHHHHHHHHHCCCeeee----------
Confidence            678888888887 565533222                 12344455531 1244566666665654321          


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                       ..++.|++|+...++++.|+.|.+++.
T Consensus       400 -----------------~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       400 -----------------VDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             -----------------cCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence                             123679999999999998999998884

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.49  E-value=4e-06  Score=79.99  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc----Cccc---CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLS----RPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~----~~~~---~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~  183 (339)
                      ++|.++|+++|+++.||+|++.....    +...   ..+|=++.+++|+++.|-  ..|+++.+++......... ..+
T Consensus       214 ~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~--~~~~~l~r~~~~l~~~~~~~~~Y  291 (373)
T PF00282_consen  214 EEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY--GCGVLLVRDKSDLRDAFSINADY  291 (373)
T ss_dssp             HHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS--S-EEEEESSGGGHHGGGEEEETC
T ss_pred             HHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCc--cceeEEeecccchHHHhccChhh
Confidence            89999999999999999999764321    1111   256889999999999764  4678888875443221100 000


Q ss_pred             ----------------cCCCCC----hHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          184 ----------------EGSGLA----PFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       184 ----------------~~~~~~----~~~a~~~~--~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                                      ++...+    .+..|+.+  .+.+.+.+++++..++++++++.|++.+.++.+.-|
T Consensus       292 l~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~  363 (373)
T PF00282_consen  292 LGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEP  363 (373)
T ss_dssp             TT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTT
T ss_pred             hcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence                            111111    13344443  356678899999999999999999999987755533

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=98.46  E-value=4.4e-06  Score=73.56  Aligned_cols=239  Identities=18%  Similarity=0.228  Sum_probs=138.8

Q ss_pred             CchHHHHHHHHHhHhCC-CeEEEcCcHH-HHHHHHHH-hcCCC-CEEEEcCCCccchH----------------------
Q 019543           54 NPTRDALESLLAKLDKA-DRALCFTSGM-AALAAVTH-LLGTG-EEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~-~~~l~~~sG~-~A~~~il~-ll~~G-D~Vi~~~~~y~~~~----------------------  107 (339)
                      .+.-+++...++.-.+- .+-+++.-|. .-+.++++ .+.|| +.|+..+|+|.-..                      
T Consensus        68 d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~ln  147 (375)
T KOG0633|consen   68 DPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLN  147 (375)
T ss_pred             CcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCcccc
Confidence            44556677777665442 3566666665 45567665 78899 88988888775211                      


Q ss_pred             -----HHHH-----------------------HHHHHHHHHc-CCEEEEeCCcC--CCCCcC---cccCCCeEEEecccc
Q 019543          108 -----RLLS-----------------------RKIAEMAHAH-GALLLVDNSIM--SPVLSR---PLELGADIVMHSATK  153 (339)
Q Consensus       108 -----~~~~-----------------------~~I~~la~~~-g~~livD~a~a--~g~~~~---~~~~~~Di~~~S~sK  153 (339)
                           ..++                       +.|.++-+-. |.++++|||+-  .|+...   .-.+.-=+++.++||
T Consensus       148 vdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSK  227 (375)
T KOG0633|consen  148 VDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSK  227 (375)
T ss_pred             HHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhh
Confidence                 1111                       4455554332 79999999983  232111   112223478899999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHH-HHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW-ICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~-~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      .+|-.| .+.|+-..+. .+++.+..+..-+......-.++ .++.  .++.++..+....+...+|...|...|.+.. 
T Consensus       228 sfGLAG-iRvG~~~~~~-~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~-  304 (375)
T KOG0633|consen  228 SFGLAG-IRVGYGAFPL-SIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLND-  304 (375)
T ss_pred             hcCcce-eEeecccccH-HHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccC-
Confidence            998644 5667877654 67777766654443322222222 2222  4566776677777777788888888776543 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEee--CCHHHHHHHH-ccCCcceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLT--GSLALSKHVV-ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~--~~~~~~~~~~-~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                       ||+              +..+..+-+++  +++..+..+. +.+...|+.|++-+.+-                     
T Consensus       305 -~~g--------------g~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrgse~---------------------  348 (375)
T KOG0633|consen  305 -YPG--------------GSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRGSEE---------------------  348 (375)
T ss_pred             -CCC--------------cccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcCCcc---------------------
Confidence             443              22455565655  3444444443 33445677777544311                     


Q ss_pred             CCCCCeEEEEeccCC-HHHHHHHHHH
Q 019543          308 GLTEDLVRISVGIED-VNDLISDLDK  332 (339)
Q Consensus       308 g~~~~~lRisvg~e~-~~~li~~l~~  332 (339)
                       .-.+.+||++|-++ ..-|++.|.+
T Consensus       349 -~c~G~lRitvGt~EentvL~k~~K~  373 (375)
T KOG0633|consen  349 -GCKGYLRITVGTPEENTVLMKCLKQ  373 (375)
T ss_pred             -ccceeEEEEcCCcccchHHHHHHHh
Confidence             13578999999644 4555555544

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.41  E-value=3.2e-05  Score=73.18  Aligned_cols=237  Identities=14%  Similarity=0.084  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCc-HHHHHHH-HHHhcCCCCEEE-EcCCCccchH---------------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTS-GMAALAA-VTHLLGTGEEIV-AGDDLYGGTD---------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~s-G~~A~~~-il~ll~~GD~Vi-~~~~~y~~~~---------------------  107 (339)
                      ...++.++.|.++++.+   +++++++ |+.+..+ ++.++.+||.++ +-..-+.+.+                     
T Consensus        49 ~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g~v~~~~~~~~~~  128 (364)
T PRK12462         49 SLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVAAMRVVWDGAASG  128 (364)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcCCceEecCcCCCC
Confidence            45788899999999862   4665555 5777775 566999999644 2111111100                     


Q ss_pred             -------HHHH------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccC-CCeEEEeccccccccCCCc
Q 019543          108 -------RLLS------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       108 -------~~~~------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~-~~Di~~~S~sK~l~g~~~~  161 (339)
                             ..++                  -+.-++.+.+++++|+|.+.+.+.  +++.. ..|++..+..|++| |.+ 
T Consensus       129 ~~~~p~~~~~~~~~d~~~v~~t~NETstGv~~~~~~~~~~~llvvD~sS~~~s--~pid~~~~dvi~agsQKnlg-P~G-  204 (364)
T PRK12462        129 YRTLPSLAELDWDARAPFRHYVSNETVEGLQFPDAAGLPDSPLIADMSSDFMS--RPFDVEAYGMVYAHAQKNLG-PAG-  204 (364)
T ss_pred             CCcCCCHHHhccCCCCcEEEEccCCCCceEecCcccccCCCeEEEEcCchhhC--CCCChHHccEEEeeccccCC-CCc-
Confidence                   0010                  011133344688899998876653  23321 23999999999998 433 


Q ss_pred             eEEEEEEcChhHHHHHHH-------HHH---h-cCCCCChHH-HHHH---Hhch--h--hHHHHHHHHHHHHHHHHHHHh
Q 019543          162 MAGVLAVKGERLAKELYF-------LQN---A-EGSGLAPFD-CWIC---LRGV--K--TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~-------~~~---~-~~~~~~~~~-a~~~---~~~l--~--~~~~r~~~~~~~a~~l~~~L~  222 (339)
                       .++++.++ +++++...       ++.   . .....+|.. -+++   +..|  +  -++.+.+++++.++.+.++++
T Consensus       205 -ltvvivs~-~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id  282 (364)
T PRK12462        205 -VTVAIIRR-ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLD  282 (364)
T ss_pred             -eEEEEECH-HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence             35777765 45544332       111   1 111233332 2222   2222  1  345667777888999999999


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +.+++    |+.. .++.       .++. -.++|.+.+.+...+|.+.++..|+.---|       |      +     
T Consensus       283 ~~~~~----~~~~-~~~~-------~RS~-mnv~f~~~~~~l~~~f~~~a~~~gl~~lkG-------h------r-----  331 (364)
T PRK12462        283 ALNEV----IDCH-AHRA-------ARST-MNVAFRFRQPRLDTLFKEQSTEAGFCGLSG-------H------R-----  331 (364)
T ss_pred             hCCCc----ccCC-CChh-------hcCc-ceEEEEcCCHHHHHHHHHHHHHCCCccccC-------C------c-----
Confidence            88753    2211 1111       1222 357777877766778988888777642222       2      1     


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                             +-+-+|+|+--.-+.+-++.|.+-++
T Consensus       332 -------~vgg~Ras~yna~~~e~v~~L~~fm~  357 (364)
T PRK12462        332 -------SIGGIRASLYNAVSEQAVSRLCAFLK  357 (364)
T ss_pred             -------ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence                   12459999965555544455544433

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.41  E-value=1.9e-05  Score=75.73  Aligned_cols=231  Identities=20%  Similarity=0.217  Sum_probs=124.4

Q ss_pred             hHHHHHHHHHhHhCCCe--EEEcCcHHHHHHH-HH--HhcC-CCCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKADR--ALCFTSGMAALAA-VT--HLLG-TGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~--~l~~~sG~~A~~~-il--~ll~-~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..-+++..++++.|-+-  +-+...++++-.+ .+  +.-+ .+++|+++...++.+...++                  
T Consensus       111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~  190 (429)
T PF02347_consen  111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDED  190 (429)
T ss_dssp             HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTT
T ss_pred             HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEeccccc
Confidence            45688999999999874  3455566555433 22  2333 34699999998888776655                  


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCc--CCCCCcCcccCCCeEEEeccccccccC---CCc
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSATKFIAGH---SDV  161 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~--a~g~~~~~~~~~~Di~~~S~sK~l~g~---~~~  161 (339)
                                               ++|.+++|++|+.+++ .+-  +.+...+|-++|+||++++ +|.||.|   |+.
T Consensus       191 ~~~d~~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP  268 (429)
T PF02347_consen  191 GTTDDDDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGP  268 (429)
T ss_dssp             CSB-STTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S
T ss_pred             CCccccCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCC
Confidence                                     9999999999999988 554  4455667778999999887 7877644   444


Q ss_pred             eEEEEEEcChhHHHHHHH-------------------------HHH--hcC-CCCCh-HH-----HHHHHhchhhHHHHH
Q 019543          162 MAGVLAVKGERLAKELYF-------------------------LQN--AEG-SGLAP-FD-----CWICLRGVKTMALRV  207 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~-------------------------~~~--~~~-~~~~~-~~-----a~~~~~~l~~~~~r~  207 (339)
                      ..|++++++ .++.++-.                         .++  -++ .+.+. +.     .++...+=+-+.+.-
T Consensus       269 ~~G~~a~~~-~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA  347 (429)
T PF02347_consen  269 GAGFFAVRE-DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIA  347 (429)
T ss_dssp             --EEEEE-G-GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeEEEhh-hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            578998875 45443321                         111  011 11121 11     122333334455556


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++...++.++++.|++..++   .+.   ..+.+           -.+....++ ....++.++....|+...       
T Consensus       348 ~~~~~~A~yl~~~L~~~~~~---~~~---~~~f~-----------e~v~~~~~~-~~~~~l~~~~~~~gl~~~-------  402 (429)
T PF02347_consen  348 ERIHLNAHYLAERLKKIYGL---PFD---NPFFF-----------EFVVVFSKD-KEVEELLKRGIEGGLNLR-------  402 (429)
T ss_dssp             HHHHHHHHHHHHHHCCTTBE---CSS---SSSBS-----------SEEEEESS--HHHHHHHHTT----EEEG-------
T ss_pred             HHHHHHHHHHHHHHHHhcCc---ccC---CCCce-----------eeeeecCCc-HHHHHHHHHHHhcCCCcc-------
Confidence            66778999999999986322   121   11111           112222233 445567776655442111       


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                        .+                  ..+.+=++++.-++++.|+.|.++|
T Consensus       403 --~~------------------~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  403 --YP------------------DDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             --GG-------------------SSEEEEE--TT--HHHHHHHHH--
T ss_pred             --cc------------------CCCeEEEEccCCCCHHHHHHHHhcC
Confidence              11                  2347889999999999999998875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.37  E-value=4.3e-05  Score=71.07  Aligned_cols=167  Identities=14%  Similarity=0.123  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhH-hCCC---------eEEEcCcHHHHHHH---HHHhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKL-DKAD---------RALCFTSGMAALAA---VTHLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~-~g~~---------~~l~~~sG~~A~~~---il~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ...+.+.++++ ||..         ..+-+.+|+.|+..   ++.-..|...|.+++|+|+....++.            
T Consensus        71 ~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yy  150 (396)
T COG1448          71 LPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYY  150 (396)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecc
Confidence            44566666664 5643         25567899999863   45556788889999999987766654            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCc-C--CCCCcCc--c--
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSI-M--SPVLSRP--L--  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~-a--~g~~~~~--~--  140 (339)
                                                                  ++|.++.++.|.+.++|=|| +  .|...+.  +  
T Consensus       151 d~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~  230 (396)
T COG1448         151 DAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRL  230 (396)
T ss_pred             ccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHH
Confidence                                                        89999999999999999997 2  3322111  1  


Q ss_pred             --cCCC-eEEEeccccccccCCCceEEEEEEc-ChhHHHHHHHH----HHhcCCCCChHH-HHHH---H-------hchh
Q 019543          141 --ELGA-DIVMHSATKFIAGHSDVMAGVLAVK-GERLAKELYFL----QNAEGSGLAPFD-CWIC---L-------RGVK  201 (339)
Q Consensus       141 --~~~~-Di~~~S~sK~l~g~~~~~gG~v~~~-~~~l~~~l~~~----~~~~~~~~~~~~-a~~~---~-------~~l~  201 (339)
                        ..+. -+++.|+||.||-.+.++|++.+.. +++..+++...    .+ ..++.+|.. +.+.   +       .+.+
T Consensus       231 ~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR-~~ySnPP~~Ga~vva~IL~~p~Lra~W~~  309 (396)
T COG1448         231 FAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIR-TNYSNPPAHGAAVVATILNNPELRAEWEQ  309 (396)
T ss_pred             HHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHH-hccCCCchhhHHHHHHHhCCHHHHHHHHH
Confidence              1122 4888999999998888888886544 44444444332    12 123334432 1111   1       1223


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          202 TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .+...++++.+.++.+.+.|+.+
T Consensus       310 El~~Mr~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         310 ELEEMRQRILEMRQALVDALKAL  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            34555666667777888888763

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.21  E-value=2.5e-05  Score=81.12  Aligned_cols=89  Identities=12%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH------
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF------  179 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~------  179 (339)
                      ++|.++|++||+++|.||++. +|-.+..     .....||++  ++|.++|.--.+ |.+++++ ++.+.+..      
T Consensus       609 ~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~--~gKgLtgG~~Pl-aa~l~~~-~I~~~f~~~~~~~~  684 (817)
T PLN02974        609 RALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC--YAKLLTGGLVPL-AATLATE-EVFEAFRGPSKLDA  684 (817)
T ss_pred             HHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEe--ecccccCCCCcc-EEEEEcH-HHHHhhccccccCC
Confidence            999999999999999999973 3322221     223458887  589998631234 4555553 66665531      


Q ss_pred             HHHhcCCCCChHHHHHHHhchhhHH
Q 019543          180 LQNAEGSGLAPFDCWICLRGVKTMA  204 (339)
Q Consensus       180 ~~~~~~~~~~~~~a~~~~~~l~~~~  204 (339)
                      +....+..-+|+.+++++..|+.++
T Consensus       685 ~~hg~Ty~gnpl~cAaala~L~~~~  709 (817)
T PLN02974        685 LLHGHSYTAHPMGCAAAAKALQWYK  709 (817)
T ss_pred             cccCCCCCcCHHHHHHHHHHHHHHH
Confidence            1112345667888888877777654

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.20  E-value=0.00012  Score=67.43  Aligned_cols=233  Identities=17%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             chHHHHHHHHHhHhC-------CCeEEEcCcH-HHHHHH-HHHhcCC------CCEEEEcCCCccchHHHHH--------
Q 019543           55 PTRDALESLLAKLDK-------ADRALCFTSG-MAALAA-VTHLLGT------GEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g-------~~~~l~~~sG-~~A~~~-il~ll~~------GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      -.-.+||+.+.+++.       ...-++|.+| |+-+.+ +.+|...      --.|+...|-|.......+        
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~  122 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYK  122 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEE
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcc
Confidence            445789998888764       1357788888 666664 4444221      1257777776665442211        


Q ss_pred             ----------------------------HHHHH-HHHHcCCEEEEeCCcCCCCCcCcc--cCCCeEEEeccccccccCCC
Q 019543          112 ----------------------------RKIAE-MAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 ----------------------------~~I~~-la~~~g~~livD~a~a~g~~~~~~--~~~~Di~~~S~sK~l~g~~~  160 (339)
                                                  -.|.+ +.+.-+..+|.|=|+-=+++- |+  +..-||..+|+||.- ||++
T Consensus       123 w~Gda~~~~~~~~~~~~IElVTSPNNPDG~lr~~V~~g~~~k~I~D~AYYWPhyT-pI~~~aD~DiMLFT~SK~T-GHAG  200 (363)
T PF04864_consen  123 WAGDASNFKNSDNPSPYIELVTSPNNPDGQLREAVLNGSSGKVIHDLAYYWPHYT-PITAPADHDIMLFTLSKLT-GHAG  200 (363)
T ss_dssp             EEEECCCGTT-S-CCGEEEEEESS-TTT------SSTTTEEEEEEE-TT-STTTS----S-B--SEEEEEHHHHC-S-GG
T ss_pred             ccccHHhhccCCCCCCeEEEEeCCCCCcccccchhcCCCCcceeeeeeeeccccc-ccCCCCCCceEEEEEeccc-Cccc
Confidence                                        33332 235556778999887544332 22  234489999999985 5656


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--------------HHHHHHHHHHHHHHHHHHhCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--------------ALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--------------~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      .+-||-+.++++..+++..+....+.+.+-....-++..|+.+              .--.+..+++.++|.+.+..-..
T Consensus       201 SR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~r  280 (363)
T PF04864_consen  201 SRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKR  280 (363)
T ss_dssp             G-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred             cccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            6666777788888888888776666676654433222222211              11133445666778888876543


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCC-CcceEEEeeC--CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHH
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKG-AGSVLSFLTG--SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  303 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~-~~~ivs~~~~--~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~  303 (339)
                      .   ..|.+  .|+|.-..+.... ....-|+.-.  +..+|.++.+..   +|..+-|.                    
T Consensus       281 F---SLq~~--~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~---~I~tr~G~--------------------  332 (363)
T PF04864_consen  281 F---SLQKF--SPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREA---KIITRSGV--------------------  332 (363)
T ss_dssp             E---EE-----SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCT---TEEEEEGG--------------------
T ss_pred             e---ecCcC--CchhccccccccCCCCCeEEEecCCcccccHHHHHHhC---CcccCCCC--------------------
Confidence            3   33432  2344333222222 2345566654  234688887654   44434342                    


Q ss_pred             HHhCCCCCCeEEEEec
Q 019543          304 RQARGLTEDLVRISVG  319 (339)
Q Consensus       304 ~~~~g~~~~~lRisvg  319 (339)
                        .+|.+...+|||+-
T Consensus       333 --~fga~~ryVRlSml  346 (363)
T PF04864_consen  333 --LFGADSRYVRLSML  346 (363)
T ss_dssp             --GGTS-TTEEEEESS
T ss_pred             --ccCCCCCeEEEecc
Confidence              13446688999985

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.17  E-value=1.3e-05  Score=74.75  Aligned_cols=161  Identities=18%  Similarity=0.263  Sum_probs=98.4

Q ss_pred             HHHHHHHHhHh---CCCeEEEcCcHHHHHHHHHHh----c---CCCC--EEEEcCCCccchH-HHHH-------------
Q 019543           58 DALESLLAKLD---KADRALCFTSGMAALAAVTHL----L---GTGE--EIVAGDDLYGGTD-RLLS-------------  111 (339)
Q Consensus        58 ~~le~~la~~~---g~~~~l~~~sG~~A~~~il~l----l---~~GD--~Vi~~~~~y~~~~-~~~~-------------  111 (339)
                      -.+++.+.+..   ..+.+.+++||+.|+.+.+.+    .   .|-+  .||.-...|+|-. ..+.             
T Consensus       101 v~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p  180 (433)
T KOG1401|consen  101 VELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDP  180 (433)
T ss_pred             HHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCC
Confidence            35566666666   567899999999999754321    1   1222  2787777776521 1111             


Q ss_pred             -------------------------------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCc----
Q 019543          112 -------------------------------------------------RKIAEMAHAHGALLLVDNSIM-SPVLS----  137 (339)
Q Consensus       112 -------------------------------------------------~~I~~la~~~g~~livD~a~a-~g~~~----  137 (339)
                                                                       ..|.++|+++|+++|.||.+- .|-.+    
T Consensus       181 ~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a  260 (433)
T KOG1401|consen  181 IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWA  260 (433)
T ss_pred             CCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHH
Confidence                                                             889999999999999999973 22221    


Q ss_pred             -CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-cC--CCCChHHHHHHHhchhhH--HHHHHHHH
Q 019543          138 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EG--SGLAPFDCWICLRGVKTM--ALRVEKQQ  211 (339)
Q Consensus       138 -~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-~~--~~~~~~~a~~~~~~l~~~--~~r~~~~~  211 (339)
                       .-+....||.+  +.|.|+|.  ...|+..+++ ++.+.+..-..+ .|  .+-+|+.+..+...|+.+  ++.+++..
T Consensus       261 ~e~~~~~PDI~t--~aK~L~gG--lPigA~~v~~-kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs  335 (433)
T KOG1401|consen  261 QEYFGVTPDITT--VAKPLGGG--LPIGATGVRD-KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS  335 (433)
T ss_pred             HHHhCcCCccee--ehhhccCC--ceeEEEeehH-HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence             12233457655  68999964  4556666664 565655432211 12  334677777777777765  44555555


Q ss_pred             HHHHHHHHHHhC
Q 019543          212 DNAQKIAEFLAS  223 (339)
Q Consensus       212 ~~a~~l~~~L~~  223 (339)
                      +..+.|++.+.+
T Consensus       336 ~~~k~L~~~l~e  347 (433)
T KOG1401|consen  336 KIGKELRKLLDE  347 (433)
T ss_pred             HHHHHHHHHHHH
Confidence            555566555543

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=97.97  E-value=0.0023  Score=59.99  Aligned_cols=236  Identities=16%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHH--HHH-H-h---cC---C-----CCEEEEcCCCccchHHHHH------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA--AVT-H-L---LG---T-----GEEIVAGDDLYGGTDRLLS------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~--~il-~-l---l~---~-----GD~Vi~~~~~y~~~~~~~~------  111 (339)
                      .-..++++.+|+++|.+  +.++..+..-.++  ++. + +   ..   |     .=..+|+.|.|+....+.+      
T Consensus        69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Giem  148 (425)
T PF12897_consen   69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGIEM  148 (425)
T ss_dssp             S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT-EE
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCcEE
Confidence            45668999999999975  5666555544432  222 1 1   11   1     2258899999987765554      


Q ss_pred             -----------------------------------------------HHHHHH-HHHcCCEEEEeCCcCCCCCc-C-c--
Q 019543          112 -----------------------------------------------RKIAEM-AHAHGALLLVDNSIMSPVLS-R-P--  139 (339)
Q Consensus       112 -----------------------------------------------~~I~~l-a~~~g~~livD~a~a~g~~~-~-~--  139 (339)
                                                                     ++++++ +...+..++.|+||+...+. + +  
T Consensus       149 i~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~  228 (425)
T PF12897_consen  149 IPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRD  228 (425)
T ss_dssp             EEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS--
T ss_pred             EecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccch
Confidence                                                           455555 23579999999999877652 1 1  


Q ss_pred             -----cc----C-CCe--EEEecccccc-ccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH---HHhchh-h
Q 019543          140 -----LE----L-GAD--IVMHSATKFI-AGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLRGVK-T  202 (339)
Q Consensus       140 -----~~----~-~~D--i~~~S~sK~l-~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~---~~~~l~-~  202 (339)
                           +.    . ..|  +...|.||.- .|.|   .+++.++.+ -++.++......+.+..-++...   -....+ .
T Consensus       229 ~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG---va~~aaS~~-Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gG  304 (425)
T PF12897_consen  229 ALLNILDACAKAGNPDRVYVFASTSKITFPGAG---VAFFAASEA-NLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGG  304 (425)
T ss_dssp             ----HHHHHHHTT-TTSEEEEEESTTTS-TTSS----EEEEE-HH-HHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTH
T ss_pred             hhhHHHHHHHHcCCCCeEEEEecccccccCCcc---eeeeecCHH-HHHHHHHHhcCceeCccHHHHHHHHHHhcChhhH
Confidence                 00    0 112  7778999964 4322   467877754 34444443333333333333221   122222 3


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc
Q 019543          203 MALRVEKQQDN--------AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  274 (339)
Q Consensus       203 ~~~r~~~~~~~--------a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~  274 (339)
                      +...++++.+.        .+.|.+.|..-.++-.+..|.                .|..|||.+.+. .++++++..++
T Consensus       305 v~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~----------------GGYFIsld~~~G-~AkrvV~lake  367 (425)
T PF12897_consen  305 VRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK----------------GGYFISLDVLDG-TAKRVVELAKE  367 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S----------------BSS-EEEEESTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC----------------CceEEEEecCCC-hHHHHHHHHHH
Confidence            33333333322        234444555222455555552                467899986332 35667776777


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHH
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS  328 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~  328 (339)
                      .|+.....+    .++|+--             ...++-|||..++...+++-.
T Consensus       368 AGV~LT~AG----AtfPyg~-------------DP~D~nIRiAPS~P~leel~~  404 (425)
T PF12897_consen  368 AGVALTPAG----ATFPYGK-------------DPRDSNIRIAPSYPSLEELET  404 (425)
T ss_dssp             TTEE---TT----TTSGGG---------------TTS-EEEE--SSS-HHHHHH
T ss_pred             hCceeCCCC----CCCCCCC-------------CCCCCcEEecCCCCCHHHHHH
Confidence            788765422    1244310             014678999999988877533

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=97.95  E-value=0.0033  Score=63.50  Aligned_cols=110  Identities=18%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             HHHHHHH---HHcCC--EEEEeCCcCCCC---CcC-------------------------------------cccCCCeE
Q 019543          112 RKIAEMA---HAHGA--LLLVDNSIMSPV---LSR-------------------------------------PLELGADI  146 (339)
Q Consensus       112 ~~I~~la---~~~g~--~livD~a~a~g~---~~~-------------------------------------~~~~~~Di  146 (339)
                      ++|+++|   +++|+  ++.||+|+|...   +.+                                     .+ ..+|-
T Consensus       298 ~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl-e~ADS  376 (608)
T TIGR03811       298 DKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI-SEAES  376 (608)
T ss_pred             HHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcC-cCceE
Confidence            8898888   77898  699999997532   111                                     01 25788


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-----------------cCCCCC--hHHHHHHHhc----hhhH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-----------------EGSGLA--PFDCWICLRG----VKTM  203 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-----------------~~~~~~--~~~a~~~~~~----l~~~  203 (339)
                      ++..+||++.-|  ..+|+++.++..+.+.+.....+                 .|....  .+..|+..+.    .+.+
T Consensus       377 ItvDpHK~g~~P--y~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gy  454 (608)
T TIGR03811       377 VTIDPHKMGYIP--YSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGY  454 (608)
T ss_pred             EEeCcccccccC--CCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHH
Confidence            899999998865  44677778876544433221111                 111111  2334444433    3457


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC
Q 019543          204 ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .+.+.+..++++++.+.|+..
T Consensus       455 g~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       455 GKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            788888889999999999874

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=97.87  E-value=0.0027  Score=60.05  Aligned_cols=110  Identities=32%  Similarity=0.398  Sum_probs=75.2

Q ss_pred             HHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHH--hcC-CCCEEEEcCCCccchHHHHH--------------------
Q 019543           58 DALESLLAKLDKAD--RALCFTSGMAALAA-VTH--LLG-TGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        58 ~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~--ll~-~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      -+++..++++.|-+  ++-+.-.++++-.+ .++  .-+ +...++++..+++.+..+++                    
T Consensus       123 fefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~  202 (450)
T COG0403         123 FEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDD  202 (450)
T ss_pred             HHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhh
Confidence            45666778888865  45555666655543 332  333 25788888888777665544                    


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeC-CcCCCCCcCcccCCCeEEEecccc-----ccccC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDN-SIMSPVLSRPLELGADIVMHSATK-----FIAGH  158 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~-a~a~g~~~~~~~~~~Di~~~S~sK-----~l~g~  158 (339)
                                                 ++|.+.+|++|+++++=. --+.+....|-++|+||++++.+.     .||||
T Consensus       203 l~~~~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGP  282 (450)
T COG0403         203 LESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGP  282 (450)
T ss_pred             hhhccccCeEEEEEecCCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCc
Confidence                                       788999999998777643 334556666778999999999764     45554


Q ss_pred             CCceEEEEEEcC
Q 019543          159 SDVMAGVLAVKG  170 (339)
Q Consensus       159 ~~~~gG~v~~~~  170 (339)
                         -.|+..+++
T Consensus       283 ---hag~fA~~~  291 (450)
T COG0403         283 ---HAGYFAVKD  291 (450)
T ss_pred             ---ceeeeeEhH
Confidence               468888875

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.82  E-value=0.00075  Score=70.51  Aligned_cols=115  Identities=22%  Similarity=0.208  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHH--hcC-CCCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAA-VTH--LLG-TGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~--ll~-~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..-+++..++++.|-+  ++-+.-.++++-.+ .++  ..+ ...+|++++..++.+..+++                  
T Consensus       125 al~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~~~~~~~  204 (954)
T PRK12566        125 ALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVVDAVDNL  204 (954)
T ss_pred             HHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEEcchhhc
Confidence            3456778889999876  55666677665443 222  222 24678888888777665444                  


Q ss_pred             ----------------------HHHHHHHHHcCCEEEEeCCc--CCCCCcCcccCCCeEEEeccc-----cccccCCCce
Q 019543          112 ----------------------RKIAEMAHAHGALLLVDNSI--MSPVLSRPLELGADIVMHSAT-----KFIAGHSDVM  162 (339)
Q Consensus       112 ----------------------~~I~~la~~~g~~livD~a~--a~g~~~~~~~~~~Di~~~S~s-----K~l~g~~~~~  162 (339)
                                            ++|.+++|++|++++ +.+-  +.+.+..|-++|+||++++..     =.+|||   -
T Consensus       205 ~~~~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP---~  280 (954)
T PRK12566        205 AAHAVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGP---H  280 (954)
T ss_pred             CCCCEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCC---C
Confidence                                  889999999999866 4332  455666777899999998643     234443   4


Q ss_pred             EEEEEEcChhHHH
Q 019543          163 AGVLAVKGERLAK  175 (339)
Q Consensus       163 gG~v~~~~~~l~~  175 (339)
                      .|++++++ ++..
T Consensus       281 ag~~a~~~-~~~R  292 (954)
T PRK12566        281 AAYFACRD-DYKR  292 (954)
T ss_pred             eeeeeehH-HHHh
Confidence            78998875 4443

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.73  E-value=0.001  Score=63.29  Aligned_cols=144  Identities=20%  Similarity=0.318  Sum_probs=84.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc--------CcccCCCeEEEeccccccccCCCceEEEEEEcChh-H-----HHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLS--------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGER-L-----AKEL  177 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~--------~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-l-----~~~l  177 (339)
                      .+|..+|+++|++|.||+||+...+.        ++++ .+|-+.+..||++--+-+  ...++.++.. +     .+.+
T Consensus       255 ~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie-~aDSfn~n~hK~~~vnfD--Cs~lWvkd~~~~~~~~~vdp~  331 (511)
T KOG0628|consen  255 EELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIE-YADSFNFNPHKWLLVNFD--CSPLWVKDGTKLSRAFNVDPL  331 (511)
T ss_pred             HHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcch-hhccccCChhheeEEeee--eecceeecCceeeeeeecChH
Confidence            89999999999999999999754432        2233 256666777898765433  2334333321 0     0111


Q ss_pred             HHHHHh-------------cCCCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchH
Q 019543          178 YFLQNA-------------EGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE  242 (339)
Q Consensus       178 ~~~~~~-------------~~~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~  242 (339)
                      ......             .|-..-.+-.|..++  +.+.++.+++++.+.++.+-+.+.+-+..+.++-.         
T Consensus       332 yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~---------  402 (511)
T KOG0628|consen  332 YLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR---------  402 (511)
T ss_pred             hhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc---------
Confidence            100000             111111223344333  45777888888888888777777766654433322         


Q ss_pred             hHhhhcCCCcceEEEee-CCHHHHHHHHccCCcc
Q 019543          243 LHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYF  275 (339)
Q Consensus       243 ~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~  275 (339)
                              .=+++.|.+ +++....++.+++...
T Consensus       403 --------~lgLvcFRlk~~N~~ne~Ll~~in~~  428 (511)
T KOG0628|consen  403 --------ILGLVCFRLKGDNEINEALLNRLNSS  428 (511)
T ss_pred             --------ccceeEEeecCCcHHHHHHHHHHHhc
Confidence                    236899987 4555667788887653

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.41  E-value=0.003  Score=57.12  Aligned_cols=182  Identities=16%  Similarity=0.201  Sum_probs=95.9

Q ss_pred             HHHHHHHHHcCCEEEEeCCc-CCCCCcCc------ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hh
Q 019543          112 RKIAEMAHAHGALLLVDNSI-MSPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~-a~g~~~~~------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~  183 (339)
                      +++++..+.+|-..|.|+++ ++|-.++.      ..+-.||++  +.|.+|-.  --.+.+++.+ ++.+.+.... .+
T Consensus       233 q~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNG--hPVa~Vattk-eIA~Af~atgv~Y  307 (452)
T KOG1403|consen  233 QAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNG--HPVAAVATTK-EIAQAFHATGVEY  307 (452)
T ss_pred             HHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchhe--ecccCCCC--CeeeEEeccH-HHHHHhcccccee
Confidence            88889999999999999998 44433221      122336664  68998732  2245666654 5655554311 12


Q ss_pred             c-CCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHH----HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          184 E-GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF----LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       184 ~-~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~----L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      + +.+-+|..++.++.-|+..+  -+.+.++++++-++    |+.+..    .++-+.+          .+|.|-.+-+.
T Consensus       308 FNTyGGnPVsCAv~laVm~v~e--~E~Lq~ha~~vG~~L~~lL~~~k~----kh~~IGD----------vRGvGLFiGId  371 (452)
T KOG1403|consen  308 FNTYGGNPVSCAVGLAVMRVCE--DENLQEHAQQVGEKLEVLLRRLKQ----KHECIGD----------VRGVGLFIGID  371 (452)
T ss_pred             hhccCCCchhHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhh----hccceec----------cccceEEEeee
Confidence            2 34557888877776665442  12223333333333    332210    1111100          14455555565


Q ss_pred             e-CC-------HHHHHHHHccCCc-ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHH
Q 019543          259 T-GS-------LALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  329 (339)
Q Consensus       259 ~-~~-------~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~  329 (339)
                      + .+       ...+..++.+|++ +++..|.-+...-+.                  .+.+   -.++..|+.++.+..
T Consensus       372 LVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~Nil------------------KiKP---PmCFneena~e~v~~  430 (452)
T KOG1403|consen  372 LVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNIL------------------KIKP---PMCFNEENADEFVLG  430 (452)
T ss_pred             eecccccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCcee------------------ecCC---CcccChhhHHHHHHH
Confidence            3 22       2335566777755 556666433222111                  1122   246777888877777


Q ss_pred             HHHHHh
Q 019543          330 LDKALR  335 (339)
Q Consensus       330 l~~al~  335 (339)
                      |.+.|.
T Consensus       431 ld~iLT  436 (452)
T KOG1403|consen  431 LDEILT  436 (452)
T ss_pred             HHHHHH
Confidence            777664

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=97.39  E-value=0.014  Score=55.47  Aligned_cols=122  Identities=22%  Similarity=0.268  Sum_probs=79.2

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcC-cHHH----HHHHHHH-hcCC----CCEEEEcCCCccchH---HHHH----------
Q 019543           55 PTRDALESLLAKLDKADRALCFT-SGMA----ALAAVTH-LLGT----GEEIVAGDDLYGGTD---RLLS----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~-sG~~----A~~~il~-ll~~----GD~Vi~~~~~y~~~~---~~~~----------  111 (339)
                      ....+||++|.+..|-+.+-+.+ +|.+    ++.+|-+ .-..    .+++++++...+.+.   .+..          
T Consensus       109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~  188 (496)
T COG1003         109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE  188 (496)
T ss_pred             HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence            35678999999999987655544 5543    3333333 2223    357888887544332   1110          


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC--cCcccCCCeEEEeccccc
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATKF  154 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~--~~~~~~~~Di~~~S~sK~  154 (339)
                                                         .+|+++.|++|..|..|.|---...  .+|-..|+||+-.-++|+
T Consensus       189 ~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLHKT  268 (496)
T COG1003         189 NGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNLHKT  268 (496)
T ss_pred             CCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEeecccc
Confidence                                               8899999999999999998633322  356667999999999999


Q ss_pred             cccC---CCceEEEEEEcChhHHHHH
Q 019543          155 IAGH---SDVMAGVLAVKGERLAKEL  177 (339)
Q Consensus       155 l~g~---~~~~gG~v~~~~~~l~~~l  177 (339)
                      |+.|   |+...|-|.++ +.+...+
T Consensus       269 F~iPHGGGGPG~GPvgVk-~~L~pfL  293 (496)
T COG1003         269 FCIPHGGGGPGAGPVGVK-AHLAPFL  293 (496)
T ss_pred             cccCCCCCCCCCCceehH-hhccccC
Confidence            9855   33334556554 3444433

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.35  E-value=0.028  Score=52.33  Aligned_cols=171  Identities=21%  Similarity=0.187  Sum_probs=98.0

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCCCC-----EEEEcCCCccch-HHH-----------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGE-----EIVAGDDLYGGT-DRL-----------  109 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~GD-----~Vi~~~~~y~~~-~~~-----------  109 (339)
                      .|+  ++.....|++...+.+|-+..+=+.-|-.|=..+.. ++++|+     ..++.++.|..+ ...           
T Consensus        74 AYa--gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~  151 (471)
T COG3033          74 AYA--GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNV  151 (471)
T ss_pred             hhc--ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccc
Confidence            455  566778899999999999988888999777554332 445444     333344433322 111           


Q ss_pred             --------------------------HH-----------------------------HHHHHHHHHcCCEEEEeCCcCC-
Q 019543          110 --------------------------LS-----------------------------RKIAEMAHAHGALLLVDNSIMS-  133 (339)
Q Consensus       110 --------------------------~~-----------------------------~~I~~la~~~g~~livD~a~a~-  133 (339)
                                                +.                             ++..++|++|+++++.|.+--. 
T Consensus       152 ~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaE  231 (471)
T COG3033         152 YVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAE  231 (471)
T ss_pred             cccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhh
Confidence                                      10                             9999999999999999987521 


Q ss_pred             C-CCc---------Ccc-------cCCCeEEEeccccc-cccCCCceEEEEEEcChh---HHHHHHHHHHh-cC----CC
Q 019543          134 P-VLS---------RPL-------ELGADIVMHSATKF-IAGHSDVMAGVLAVKGER---LAKELYFLQNA-EG----SG  187 (339)
Q Consensus       134 g-~~~---------~~~-------~~~~Di~~~S~sK~-l~g~~~~~gG~v~~~~~~---l~~~l~~~~~~-~~----~~  187 (339)
                      - ++.         ..+       -..+|-.+-|.-|= +.    -+||+++.+++.   +...++...-. .|    .+
T Consensus       232 NaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lv----nmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGg  307 (471)
T COG3033         232 NAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLV----NMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGG  307 (471)
T ss_pred             hhhhhhhcCcccccccHHHHHHHHHhhhhhheeecccccee----ccccEEEecCccHHHHHHHHHhheEeeccccccCc
Confidence            1 111         000       01346666677663 32    478999999874   44444443211 11    23


Q ss_pred             CChHHHHHHHhchhh-H-HHHHHHHHHHHHHHHHHHhCC
Q 019543          188 LAPFDCWICLRGVKT-M-ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~-~-~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      |+--+...+..+|.. + ...++.+-+..++|.+.|.+.
T Consensus       308 l~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~  346 (471)
T COG3033         308 LAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA  346 (471)
T ss_pred             ccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence            333222222223322 1 223444445567888888875

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0014  Score=60.41  Aligned_cols=147  Identities=15%  Similarity=0.196  Sum_probs=80.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCc-------CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLS-------RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~-------~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~  183 (339)
                      +.|.++++|||+.+||||++. .|.-+       -.+....|+++  |||-|-     .||+..  ++++... ..++.+
T Consensus       295 ~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vT--FSKK~q-----~gGffh--~~~frpn-~pYrif  364 (484)
T KOG1405|consen  295 RKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVT--FSKKFQ-----TGGFFH--DEEFRPN-EPYRIF  364 (484)
T ss_pred             HHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCcccee--hhhhhh-----cCcccc--CcccCCC-chHHHh
Confidence            889999999999999999983 22222       12444567765  677775     256654  3233211 112222


Q ss_pred             cCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC
Q 019543          184 EGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  261 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~  261 (339)
                      -+++=.|.-..++...++.+.  ..+.+...--+.|...|.++.    -.||+.-+         ..+|.|..+++...+
T Consensus       365 NTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq----~~~p~~~~---------~~RGrGTF~a~d~ps  431 (484)
T KOG1405|consen  365 NTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQ----AKYPGKIN---------NLRGRGTFIAWDCPS  431 (484)
T ss_pred             hhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhCchhhh---------cccccceEEEEeCCC
Confidence            233334544444433333331  122222233344444444331    12454211         136788899999877


Q ss_pred             HHHHHHHHccCCcceeecccCC
Q 019543          262 LALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       262 ~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      ......|+..++..|  +..|+
T Consensus       432 ~~~Rdk~i~~~~~nG--v~~GG  451 (484)
T KOG1405|consen  432 GSIRDKLILIARLNG--VNLGG  451 (484)
T ss_pred             hHHHHHHHHHHHHcC--ceecc
Confidence            777788888877654  45565

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=97.08  E-value=0.013  Score=54.86  Aligned_cols=181  Identities=17%  Similarity=0.204  Sum_probs=99.1

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCC----CeEEEcCcHHHHHHHHHHh--cCCCCEEEEcCC---CccchHHHHH------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALAAVTHL--LGTGEEIVAGDD---LYGGTDRLLS------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~----~~~l~~~sG~~A~~~il~l--l~~GD~Vi~~~~---~y~~~~~~~~------  111 (339)
                      |+-|++-.-.++...+.+.+.-|-    ++..++++...|+..++.+  -.+.|-|+++-|   +|.++...+.      
T Consensus       109 YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v~Y  188 (475)
T KOG0258|consen  109 YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQVPY  188 (475)
T ss_pred             cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCcccce
Confidence            444444333344444444444441    2455555558888776663  457788998876   4444443222      


Q ss_pred             -------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC------
Q 019543          112 -------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL------  136 (339)
Q Consensus       112 -------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~------  136 (339)
                                                                       ++|...|+++|+.|+-|+++---++      
T Consensus       189 yLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skF  268 (475)
T KOG0258|consen  189 YLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKF  268 (475)
T ss_pred             eeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcch
Confidence                                                             8999999999999999998732221      


Q ss_pred             ----------cCcccCCC-eEEEeccccccccCCCceEEEEEE--cChhHHHHHHHHHH--h----cC-----CCCChH-
Q 019543          137 ----------SRPLELGA-DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQN--A----EG-----SGLAPF-  191 (339)
Q Consensus       137 ----------~~~~~~~~-Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~~~~~--~----~~-----~~~~~~-  191 (339)
                                +++..... -+..+|.||.+.|..+-+||++=.  .+++..+.+..+..  .    .|     ..++|- 
T Consensus       269 hSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~  348 (475)
T KOG0258|consen  269 HSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPK  348 (475)
T ss_pred             HhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCC
Confidence                      11111111 255577899999887788888633  22233333332221  0    01     111110 


Q ss_pred             ---HHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          192 ---DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       192 ---~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                         ..+-..  ...-+.-+..++..++.+.+.++..++|++
T Consensus       349 Pgd~Sy~~~--~~Ekd~il~~l~~ra~l~~~~~ns~~gi~c  387 (475)
T KOG0258|consen  349 PGDPSYDLF--SSEKDGILSSLRSRAKLTEDAFNSLEGISC  387 (475)
T ss_pred             CCCcchhhh--hhhhHhHHHHHHHHhHHHHHHHhhcCceee
Confidence               011000  011233355566677888889999998764

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=97.06  E-value=0.018  Score=53.71  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=85.3

Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH--H---H----hc-C--CCCChHHHH-HH---Hhchhh---HH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--Q---N----AE-G--SGLAPFDCW-IC---LRGVKT---MA  204 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~---~----~~-~--~~~~~~~a~-~~---~~~l~~---~~  204 (339)
                      .|++.++..|.+|+.|   -++++.++ ++.+++...  .   +    .. +  ...+|..++ +.   ...++.   ++
T Consensus       191 ~dviyagaQKnlGpaG---ltvvIvr~-~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~  266 (365)
T COG1932         191 YDVIYAGAQKNLGPAG---LTVVIVRP-DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLE  266 (365)
T ss_pred             cceEEEehhhccCccc---eEEEEEcH-HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHH
Confidence            4799999999999654   46777775 666666542  0   1    11 1  222343332 22   222222   34


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCc
Q 019543          205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSV  284 (339)
Q Consensus       205 ~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~  284 (339)
                      ...++..++++.|.+++.+.+..+...-|.             .++ --.++|.+.+.+-...|+..+...|...--|  
T Consensus       267 ~~~~rn~~ka~~LY~~id~s~fy~~~v~~~-------------~RS-~mnV~f~~~~~~ld~~fv~eae~~gl~~lkG--  330 (365)
T COG1932         267 ALEARNQAKAQLLYDWIDKSDFYRNLVAKA-------------NRS-RMNVTFTLVDAELDKGFVAEAEAAGLIYLKG--  330 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccchh-------------hcc-ceeEEEEcCcHHHHHHHHHHHHHcCCceecc--
Confidence            555666688999999999876433211111             122 2357777776666677887776655433222  


Q ss_pred             ccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Q 019543          285 KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALR  335 (339)
Q Consensus       285 ~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~  335 (339)
                                 |+.           ..+ +|+|++-    |+.+.|++-+.+..+
T Consensus       331 -----------hr~-----------vgG-mRasiynA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         331 -----------HRS-----------VGG-LRASIYNAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             -----------ccC-----------CCc-eeeeeecCCCHHHHHHHHHHHHHHHH
Confidence                       111           223 8999974    666777666666544

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.04  E-value=0.0015  Score=54.22  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=39.1

Q ss_pred             CCchHHHHHHHHHhHhC------CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccc
Q 019543           53 GNPTRDALESLLAKLDK------ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGG  105 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g------~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~  105 (339)
                      ....++++.+.+.+.+|      .+++++++++++|+..+ ..++.|||.|++++|.|++
T Consensus        94 ~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         94 LANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             cHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            33456666666666655      23677777778999864 4589999999999999975

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=96.70  E-value=0.018  Score=54.50  Aligned_cols=65  Identities=15%  Similarity=0.088  Sum_probs=42.4

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCC------cCcccC-CCeEEEeccccccccCCCceEEEEEEcChhHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVL------SRPLEL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY  178 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~------~~~~~~-~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~  178 (339)
                      ++|+++|++||++.++-+||+.=..      .+.... ..|+.+.|+.|-|--|  +.|+.+++.++..+..+.
T Consensus       175 ~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VP--vGgai~As~~~~~i~~vs  246 (389)
T PF05889_consen  175 EEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVP--VGGAIMASFDPSGILAVS  246 (389)
T ss_dssp             HHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEE--SSHEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEec--CCCcEEEecCHHHHHHHH
Confidence            8999999999999999999976111      011111 4689999999988754  235566666655554443

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.035  Score=53.26  Aligned_cols=182  Identities=15%  Similarity=0.199  Sum_probs=102.1

Q ss_pred             HHHHHHHHH-cCCEEEEeCCcCCCCC--c--CcccCCC-e----EEEeccccccccCCCceEEEEEEcChhH-HHHHHHH
Q 019543          112 RKIAEMAHA-HGALLLVDNSIMSPVL--S--RPLELGA-D----IVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFL  180 (339)
Q Consensus       112 ~~I~~la~~-~g~~livD~a~a~g~~--~--~~~~~~~-D----i~~~S~sK~l~g~~~~~gG~v~~~~~~l-~~~l~~~  180 (339)
                      ++|.++.-+ +++++.+|.+-|..+.  +  ...+++. +    -...+.+||=-.+.+ .+ +++.+++++ .+.+...
T Consensus       238 e~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G-~~-~vl~r~k~~~~~q~~~~  315 (491)
T KOG1383|consen  238 EKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG-SS-WVLYRNKELLPHQLFFH  315 (491)
T ss_pred             HHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecC-cE-EEEEcccccccceEEEe
Confidence            899999988 9999999999765443  1  1112211 1    222346787433322 24 444444333 2222111


Q ss_pred             HHhcCC----------CCC--hHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhh
Q 019543          181 QNAEGS----------GLA--PFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYS  246 (339)
Q Consensus       181 ~~~~~~----------~~~--~~~a~~~~--~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~  246 (339)
                      .+..|.          ..+  -..+|..+  -+-+-..+..++..++++.+.+.+++.+++..+.-              
T Consensus       316 ~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk--------------  381 (491)
T KOG1383|consen  316 TDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGK--------------  381 (491)
T ss_pred             ccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCC--------------
Confidence            111121          111  12334333  34456778888999999999999999877643322              


Q ss_pred             hcCCCcceEEEee-CCH-HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHH
Q 019543          247 QAKGAGSVLSFLT-GSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVN  324 (339)
Q Consensus       247 ~~~~~~~ivs~~~-~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~  324 (339)
                            +.++|.. +.. -...++.+.|+.+|..++-      ...|+ ..|              -..+|+.+-.+-.+
T Consensus       382 ------p~vs~~~~~s~~~~i~elsd~l~~~GW~lna------lq~P~-a~H--------------i~vt~~~~~~~~A~  434 (491)
T KOG1383|consen  382 ------PLVSFILFGSNDVNIFELSDLLRKKGWILNA------LQFPA-AIH--------------ICVTRVHAREDVAD  434 (491)
T ss_pred             ------CcEEEEEccCCccchhhhhHHHHhcCcCccc------cCCCC-ceE--------------EEEEeeeccHHHHH
Confidence                  4566664 322 3356777888777654431      12232 111              13466666655578


Q ss_pred             HHHHHHHHHHhc
Q 019543          325 DLISDLDKALRT  336 (339)
Q Consensus       325 ~li~~l~~al~~  336 (339)
                      +++.|+.+++++
T Consensus       435 ~~v~Di~~~~~e  446 (491)
T KOG1383|consen  435 RFVADIRKVVEE  446 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            889999988865

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=95.79  E-value=0.19  Score=46.06  Aligned_cols=67  Identities=16%  Similarity=0.161  Sum_probs=45.0

Q ss_pred             HHHHHHHHHcCCEEEEeCCc---CCCCCcC-------cccCCC-eEEEeccccccccCCCceEEE-EEEcChhHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSI---MSPVLSR-------PLELGA-DIVMHSATKFIAGHSDVMAGV-LAVKGERLAKELY  178 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~---a~g~~~~-------~~~~~~-Di~~~S~sK~l~g~~~~~gG~-v~~~~~~l~~~l~  178 (339)
                      .+|+++-++.+...+.|-++   ++|-..+       ....|. -+++.||+|.+|..+.+.|-+ ++.+++..+..+.
T Consensus       201 ~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~  279 (410)
T KOG1412|consen  201 KQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVK  279 (410)
T ss_pred             HHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHH
Confidence            78999999999999999997   3332211       012233 388899999999887776655 3345545555444

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=95.43  E-value=0.089  Score=48.75  Aligned_cols=107  Identities=18%  Similarity=0.196  Sum_probs=72.4

Q ss_pred             EEcCcHHHHHH--H-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           74 LCFTSGMAALA--A-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        74 l~~~sG~~A~~--~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      +-+-||+.|+-  + +++..-|+-.|.+++|+|+.....+.                                       
T Consensus       124 vQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilL  203 (427)
T KOG1411|consen  124 VQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILL  203 (427)
T ss_pred             EEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEe
Confidence            34568888874  2 55655678889999998875433222                                       


Q ss_pred             -----------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----------ccCCCe-EEEeccccccccCCCceE
Q 019543          112 -----------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----------LELGAD-IVMHSATKFIAGHSDVMA  163 (339)
Q Consensus       112 -----------------~~I~~la~~~g~~livD~a~a~g~~~~~----------~~~~~D-i~~~S~sK~l~g~~~~~g  163 (339)
                                       ++|.++-++.+..-+.|-++-....++.          .+.|.. +++.|+.|.+|-.|...|
T Consensus       204 haCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvG  283 (427)
T KOG1411|consen  204 HACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVG  283 (427)
T ss_pred             ehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccc
Confidence                             8899999999999999998743222221          122333 677899999998777766


Q ss_pred             EE-EEEcChhHHHHHHHH
Q 019543          164 GV-LAVKGERLAKELYFL  180 (339)
Q Consensus       164 G~-v~~~~~~l~~~l~~~  180 (339)
                      .+ |++.+++...++...
T Consensus       284 a~svvc~~ad~A~rV~SQ  301 (427)
T KOG1411|consen  284 ALSVVCKDADEAKRVESQ  301 (427)
T ss_pred             eeEEEecCHHHHHHHHHH
Confidence            66 566766666655543

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=95.01  E-value=0.066  Score=50.90  Aligned_cols=116  Identities=17%  Similarity=0.265  Sum_probs=75.9

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcC--------cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSR--------PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~--------~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-  182 (339)
                      ..|+++|++|++++.||+|++.|..-.        .++ .+|-+.-+-+|.+|.+  ...+..+.+.+.+.++..++.. 
T Consensus       273 ~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Gie-ra~SvtwnpHK~~gap--lqCsa~l~r~~gll~~Cn~~~A~  349 (510)
T KOG0629|consen  273 NGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIE-RANSVTWNPHKLMGAP--LQCSAFLTREEGLLQRCNQMSAI  349 (510)
T ss_pred             HHHHHHHHhcCEEEEeecccccccccChhhHhhccCcc-ccCceeecHHHhhcCc--chhhHHHHHHHHHHHhhcccchh
Confidence            899999999999999999998876522        112 3566777789999854  4555555554444333322211 


Q ss_pred             -------h------c-------CCCCChHHHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          183 -------A------E-------GSGLAPFDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       183 -------~------~-------~~~~~~~~a~~~~--~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                             .      +       |-..+-+--|+..  ++-+-++.++++.-++|+++.+.+++.++...+
T Consensus       350 YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l  419 (510)
T KOG0629|consen  350 YLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEML  419 (510)
T ss_pred             hhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceeh
Confidence                   0      0       1122333345543  345667888999999999999999988764443

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=94.30  E-value=1  Score=45.40  Aligned_cols=58  Identities=28%  Similarity=0.417  Sum_probs=41.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCC--CCcCcccCCCeEEEeccccccccC---CCceEEEEEEc
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSP--VLSRPLELGADIVMHSATKFIAGH---SDVMAGVLAVK  169 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g--~~~~~~~~~~Di~~~S~sK~l~g~---~~~~gG~v~~~  169 (339)
                      ++++++.|+||--|..|.|---.  -..+|-..|+|+.---++|+|+-|   |+..+|-|.++
T Consensus       700 ~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK  762 (1001)
T KOG2040|consen  700 DDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK  762 (1001)
T ss_pred             HHHHHHHHhcCCEEEecCCCccceecccCCccccccceeecccceeeecCCCCCCCCCccchh
Confidence            88999999999999999885211  124566678999888999999733   22334455443

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=93.54  E-value=0.81  Score=46.00  Aligned_cols=93  Identities=24%  Similarity=0.381  Sum_probs=61.9

Q ss_pred             HHHHHhHhCCC--eEEEcCcHHHHHHH-HHH-hcCCCCEEEEcCCCccchHHHHH-------------------------
Q 019543           61 ESLLAKLDKAD--RALCFTSGMAALAA-VTH-LLGTGEEIVAGDDLYGGTDRLLS-------------------------  111 (339)
Q Consensus        61 e~~la~~~g~~--~~l~~~sG~~A~~~-il~-ll~~GD~Vi~~~~~y~~~~~~~~-------------------------  111 (339)
                      +..++++.|-.  ++-+.--|++|-.+ .+. -..++-..+++...++.+..+++                         
T Consensus       169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~~~~~s~~~v  248 (1001)
T KOG2040|consen  169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIKEADYSSKDV  248 (1001)
T ss_pred             HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecCHHHhhccccce
Confidence            34556666643  56667778877653 332 23445557888888888776655                         


Q ss_pred             -----------------HHHHHHHHHcCCEEEEeCCc-CCCCCcCcccCCCeEEEecccc
Q 019543          112 -----------------RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -----------------~~I~~la~~~g~~livD~a~-a~g~~~~~~~~~~Di~~~S~sK  153 (339)
                                       .+++++|++.|..+++-.-- +.-....|-++|+||+++|...
T Consensus       249 ~gvlvQYP~t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQR  308 (1001)
T KOG2040|consen  249 SGVLVQYPDTEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQR  308 (1001)
T ss_pred             eEEEEEcCCCCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeeccccc
Confidence                             89999999999887654322 2223345567899999999654

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=83.82  E-value=2.5  Score=38.87  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=40.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCCCceEEEEEE
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMAGVLAV  168 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~  168 (339)
                      .+|...-+..|++|-.|=||+.|-. ..-..+|+|+.|-...||++...+.+||..+-
T Consensus       234 ~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvH  291 (465)
T KOG3846|consen  234 GAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVH  291 (465)
T ss_pred             hhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeee
Confidence            5665444556888888888887732 22235799999999999998655566777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	339
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		1e-162
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		4e-67
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		3e-62
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		4e-61
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		7e-61
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		2e-59
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-58
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		1e-58
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		1e-58
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		2e-58
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		3e-58
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		1e-54
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		2e-54
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		8e-54
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		1e-53
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		2e-52
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		5e-52
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-51
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		2e-51
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		1e-41
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		1e-40
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		3e-34
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		3e-28
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		7e-28
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		7e-25
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		7e-25
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		3e-24

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  567 bits (1462), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/386 (71%), Positives = 308/386 (79%), Gaps = 47/386 (12%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ES            CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198
Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258
Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318
Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378
Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438
Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  251 bits (641), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 209/378 (55%), Gaps = 53/378 (14%)
Query: 9   VSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXX 67
           ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E      
Sbjct: 20  LATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAAL 79
Query: 68  XXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR--------------- 112
                   F SGMAA + V  LL  G  +VA DDLYGGT RL  R               
Sbjct: 80  EGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139
Query: 113 ---------------------------------KIAEMAHAHGALLLVDNSIMSPVLSRP 139
                                             IA +A  HG L +VDN+  SP+L RP
Sbjct: 140 TDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGER--LAKELYFLQNAEGSGLAPFDCWICL 197
           L LGAD+V+HSATK++ GHSD++ G+ AV G+   LA+++ FLQN+ G    PFD ++ L
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGI-AVVGDNAELAEQMAFLQNSIGGVQGPFDSFLAL 258
Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
           RG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G ++S 
Sbjct: 259 RGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSI 318
Query: 258 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
            L G    +K   E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ LVR+
Sbjct: 319 VLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRL 378
Query: 317 SVGIEDVNDLISDLDKAL 334
           SVGIED+ DL  DL++AL
Sbjct: 379 SVGIEDLGDLRGDLERAL 396

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 206/389 (52%), Gaps = 55/389 (14%)
Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60
Query: 61  ESXXXXXXXXXXXXCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSR-------- 112
           E              F+SG A  A +   L  G   V+  D+YGGT R  ++        
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 113 --------------------------------------KIAEMAHAHGA----LLLVDNS 130
                                                 K+A++   H A    +L+VDN+
Sbjct: 121 TSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNT 180
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 190
            +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +P
Sbjct: 181 FLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240
Query: 191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAK 249
           FD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q +
Sbjct: 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300
Query: 250 GA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA 306
            A  G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+A
Sbjct: 301 DALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREA 360
Query: 307 RGLTEDLVRISVGIEDVNDLISDLDKALR 335
            G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 361 SGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 49/344 (14%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 37  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 96
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLL---------------------------------- 110
            +THLL  G++I+  DD+YGGT+R                                    
Sbjct: 97  TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 156
Query: 111 -------SRKI------AEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 156
                  ++K+      A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 216
Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 217 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 276
Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 275
           +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++  K F
Sbjct: 277 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 336
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
           ++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 337 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 380

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  230 bits (587), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 49/344 (14%)
Query: 25  ALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAALA 84
           A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE              F SG+AA  
Sbjct: 41  AVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATV 100
Query: 85  AVTHLLGTGEEIVAGDDLYGGTDRLL---------------------------------- 110
            +THLL  G++I+  DD+YGGT+R                                    
Sbjct: 101 TITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVW 160
Query: 111 -------SRKI------AEMAHAHGALLLV-DNSIMSPVLSRPLELGADIVMHSATKFIA 156
                  ++K+      A + H HG ++LV DN+ MSP   RPL LGADI M+SATK++ 
Sbjct: 161 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMN 220
Query: 157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQK 216
           GHSDV+ G+++V  E L   L FLQN+ G+  +P DC++C RG+KT+ +R+EK   N   
Sbjct: 221 GHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMA 280
Query: 217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSFLTGSLALSKHVVETTKYF 275
           +A+FL S+P V+KV Y GLP HP HEL   Q  G  G V  ++ G+L  ++  ++  K F
Sbjct: 281 VAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLF 340
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
           ++  S G  +SL  +P  M+HAS+    R   G+++ L+R+SVG
Sbjct: 341 TLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG 384

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 203/394 (51%), Gaps = 59/394 (14%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
           S                                                 +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGXMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
           S                                                 +A +AH  GA
Sbjct: 121 SHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 202/394 (51%), Gaps = 59/394 (14%)
Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR
Sbjct: 1   MSDXRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60
Query: 52  SGNPTRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE                SG++A+   +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120
Query: 111 SRK-----------------------------------------------IAEMAHAHGA 123
           S                                                 +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQN 182
           LL+VDN+ MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300
Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360
Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 200/387 (51%), Gaps = 59/387 (15%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRK---- 113
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS      
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 114 -------------------------------------------IAEMAHAHGALLLVDNS 130
                                                      +A +AH  GALL+VDN+
Sbjct: 128 GINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 189
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 250 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 309 LTEDLVRISVGIEDVNDLISDLDKALR 335
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  223 bits (567), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 200/387 (51%), Gaps = 59/387 (15%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 8   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 67
Query: 59  ALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRK---- 113
           ALE                SG++A+   +  L   G+ IV+   +YG T   LS      
Sbjct: 68  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 114 -------------------------------------------IAEMAHAHGALLLVDNS 130
                                                      +A +AH  GALL+VDN+
Sbjct: 128 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 187
Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-LQNAEGSGLA 189
            MSP   +PL+LGADIV+HS T +I GH DV+ G++  K E + +  +  L++  G  ++
Sbjct: 188 FMSPYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 247
Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 248 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 307
Query: 250 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 308 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 309 LTEDLVRISVGIEDVNDLISDLDKALR 335
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 368 ITDGLIRLSVGLEDPEDIINDLEHAIR 394

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  222 bits (565), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 196/378 (51%), Gaps = 54/378 (14%)
Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESXXX 65
           G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE+   
Sbjct: 17  GLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALA 76
Query: 66  XXXXXXXXXCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSR------------ 112
                     F+SGMAA   A+  +L  G+ +V  DD YGGT RL+ +            
Sbjct: 77  AVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPV 136
Query: 113 -----------------------------------KIAEMAHAHGALLLVDNSIMSPVLS 137
                                               IA++     A +LVDN+  SP L 
Sbjct: 137 ALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ 196
Query: 138 RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICL 197
           +PL LGAD+V+HS T +I GHSDV+ G L    E L +   FLQN  G+   PFD ++ +
Sbjct: 197 QPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTM 256
Query: 198 RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
           RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q +G G ++S 
Sbjct: 257 RGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSV 316
Query: 258 -LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRI 316
            +      ++ +   T  F +  S GSV+SLI  P  M+HAS      +   + +DLVR+
Sbjct: 317 RMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLE---VPDDLVRL 373
Query: 317 SVGIEDVNDLISDLDKAL 334
           SVGIEDV DL+ DL +AL
Sbjct: 374 SVGIEDVADLLDDLKQAL 391

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 205/384 (53%), Gaps = 59/384 (15%)
Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR GNPT   LE
Sbjct: 9   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 68
Query: 62  SXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSR-------- 112
                          +SGM A+AA V  +L  G+ +++ + LYG T  L           
Sbjct: 69  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 128
Query: 113 ---------------------------------KIAEM------AHAH-GALLLVDNSIM 132
                                            KI +M      AH+  G L++ DN+  
Sbjct: 129 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 188
Query: 133 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGLAPF 191
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++  GS ++P 
Sbjct: 189 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 248
Query: 192 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 251
           D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  
Sbjct: 249 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 308
Query: 252 GSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 310
           GS+++F+  S    +K +++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T
Sbjct: 309 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 368
Query: 311 EDLVRISVGIEDVNDLISDLDKAL 334
           + ++R+SVGIED ++LI+D  + L
Sbjct: 369 DGMIRLSVGIEDADELIADFKQGL 392

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  209 bits (532), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 183/363 (50%), Gaps = 56/363 (15%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------- 111
            A+++ T   L  G+ ++AGD LYG T  L +                            
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 112 -------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 152
                              + IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 212
           K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 KYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 272
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E  
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 273 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 332
           K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 333 ALR 335
           AL 
Sbjct: 385 ALE 387

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  207 bits (526), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 182/363 (50%), Gaps = 56/363 (15%)
Query: 29  PLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGM 80
           P++QT+TF   S  +           + Y+R GNPT +  E              F SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 81  AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------- 111
            A+++ T   L  G+ ++AGD LYG T  L +                            
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 112 -------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSAT 152
                              + IA + H  GA L+VD +  SP   +PLELGADI +HS +
Sbjct: 145 TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVS 204
Query: 153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQD 212
            +I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+ +R++   +
Sbjct: 205 XYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHME 264
Query: 213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT 272
           N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S   +K ++E  
Sbjct: 265 NGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHL 324
Query: 273 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 332
           K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V+D+I+DL +
Sbjct: 325 KVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ 384
Query: 333 ALR 335
           AL 
Sbjct: 385 ALE 387

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 186/367 (50%), Gaps = 49/367 (13%)
Query: 18  NEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFT 77
           N+ + YG +  P++ ++T+      E   +DY+R GNPTRD ++                
Sbjct: 15  NDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 78  SGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLSR------------------------ 112
           +GM+A+  VT + L  G+ +VA  D YGG+ RL                           
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 113 -----------------------KIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMH 149
                                  KI  +A   GA+ +VDN+ +SP L  PL LGAD+V+H
Sbjct: 135 AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLH 194
Query: 150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEK 209
           S T ++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG++T+  R+E 
Sbjct: 195 SCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMEL 254
Query: 210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHV 268
            Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF L G     +  
Sbjct: 255 AQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRF 314
Query: 269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLIS 328
           +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS GIED  DLI+
Sbjct: 315 LGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA 374
Query: 329 DLDKALR 335
           DL+   R
Sbjct: 375 DLENGFR 381

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 147/212 (69%), Gaps = 1/212 (0%)
Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 182
           L++VDN+  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++
Sbjct: 116 LVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD 175
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G+ ++P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 302
           +   Q K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E
Sbjct: 236 IAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKE 295
Query: 303 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            R+A GLT++L+R+SVG E+V D+I DL +AL
Sbjct: 296 EREAAGLTDNLIRLSVGCENVQDIIDDLKQAL 327

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  201 bits (511), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 65/391 (16%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
           T + LE+               SGM A+ + +  LL  G+E++ G+ LYG T   L   I
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
            E                                               +A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
           DN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 65/391 (16%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
           T + LE+               SGM A+ + +  LL  G+E++ G+ LYG T   L   I
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
            E                                               +A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  199 bits (505), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 200/391 (51%), Gaps = 65/391 (16%)
Query: 7   PGVSTLLMNFSNEFDPY---GALSTPLYQTATFKQPS--------ATENGPYDYTRSGNP 55
           PG +T  ++  + +DP    GAL  P+YQTATF  P+        A E   + Y+R  NP
Sbjct: 8   PGFATRAIH--HGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNP 65
Query: 56  TRDALESXXXXXXXXXXXXCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLSRKI 114
           T + LE+               SGM A+ + +  LL  G+E++ G+ LYG T   L   I
Sbjct: 66  TLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGI 125
Query: 115 AE-----------------------------------------------MAHAHGALLLV 127
            E                                               +A  HGA ++V
Sbjct: 126 GEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185
Query: 128 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG 185
           DN+  +P L RPLELGAD+V+HSAT +++GH D+ AG++ V  + L   +    L++  G
Sbjct: 186 DNTYCTPYLQRPLELGADLVVHSATXYLSGHGDITAGIV-VGSQALVDRIRLQGLKDMTG 244
Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304
Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 176/359 (49%), Gaps = 54/359 (15%)
Query: 30  LYQTATFKQPS-ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTSGMAAL-AAVT 87
           +Y +A   + S A E   Y Y+R GNPT    E                SGMAA+  ++ 
Sbjct: 55  VYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLG 114
Query: 88  HLLGTGEEIVAGDDLYG---------------------GTD-----RLLS---------- 111
            LLG G+ +VA   L+G                     G D     R LS          
Sbjct: 115 ALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFET 174
Query: 112 -----------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 160
                        + E+AHA GA +++DN   +P+L +   LG D+V++S T  I G   
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF 220
           V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A+RV+    +AQ+IAEF
Sbjct: 235 VLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEF 294
Query: 221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKH----VVETTKYF 275
           L  HP V+ V Y  LP HP ++L   Q  G G+V++F L     ++K     V++  +  
Sbjct: 295 LNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI 354
Query: 276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG+ED +DLI+D+D+AL
Sbjct: 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 173/368 (47%), Gaps = 59/368 (16%)
Query: 25  ALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESXXXXXXXXXXXXCF 76
           A++TP+  T+ +     +E           ++Y R GNPT   LE               
Sbjct: 76  AITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLM 135
Query: 77  TSGM-AALAAVTHLLGTGEEIVAGDDLY--------------------------GGTDRL 109
            SGM A+   +  L+  G  IV   D Y                          G  +  
Sbjct: 136 ASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA 195
Query: 110 LSRK----------------------IAEMAHAHGALLLVDNSIMSPVLSRPLELGADIV 147
           L++K                      ++++ H  GAL+ +D +  +P+  + L LGAD+V
Sbjct: 196 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLV 255
Query: 148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRV 207
           +HSATKF+ GH+DV+AG ++    +L  E+  L +  G  L P   ++ +RG+KT+ LRV
Sbjct: 256 LHSATKFLGGHNDVLAGCIS-GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRV 314
Query: 208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSK 266
           ++Q   A ++AE L +HP+V+ V Y GL  HP H +   Q  G G  +SF + G L  + 
Sbjct: 315 QQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTA 374
Query: 267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL 326
             V+  K   I  SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL
Sbjct: 375 KFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDL 434
Query: 327 ISDLDKAL 334
            +D+ +AL
Sbjct: 435 KADILQAL 442

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 171/399 (42%), Gaps = 91/399 (22%)
Query: 27  STPLYQTAT--FKQPS------ATENGPYDYTRSGNPTRDALESXXXXXXXXXXXXCFTS 78
             P+Y T +  FK P       A +     Y+R  NPT D LE                S
Sbjct: 22  QVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATAS 81
Query: 79  GMAA-LAAVTHLLGTGEEIVAGDDLYGGT--------------DRLLSRK---------- 113
           G AA   A+T L   G+ IV+  +LYGGT               R  SR+          
Sbjct: 82  GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALT 141
Query: 114 ------------------------IAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVM 148
                                   +A+ A   G  L+VDN+  M   L RPL  GA +V 
Sbjct: 142 DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVT 201
Query: 149 HSATKFIAGHSDVMAGVL---------------------AVKGERLAK---ELYFLQNA- 183
           HS TK++ GH  V+AG +                        G RL +   EL F+  A 
Sbjct: 202 HSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261
Query: 184 ------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 237
                 +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY GLP 
Sbjct: 262 VDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH 321
Query: 238 HPGHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS 295
           HP H+      KG  G+VL+F L G    +K  +   K  S   + G  ++L   P   +
Sbjct: 322 HPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTT 381
Query: 296 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 382 HSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 164/397 (41%), Gaps = 85/397 (21%)
Query: 21  DPYGALSTPLYQTATF--------KQPSATENGPYDYTRSGNPTRDALESXXXXXXXXXX 72
           DP+GA+  P+Y  A +        ++  AT  G Y Y R  +PT  ALE           
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73
Query: 73  XXCFTSGMAALAAVTHLLGT-GEEIVAGDDLYGGTDRLLSR------------------- 112
                SG AA  A    L   G+E+VA   L+G T  L  +                   
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPEAV 133
Query: 113 ---------------------------KIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 144
                                       +A +A   G  L+VDN+   +  L RPL  GA
Sbjct: 134 REALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGA 193
Query: 145 DIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQ---------------------- 181
            +V+ S T + +GH  V+ G VL+ + E       FLQ                      
Sbjct: 194 HVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253
Query: 182 ----NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE 237
               +  G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLPE
Sbjct: 254 TLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPE 313
Query: 238 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA 297
            P H          G +L+   G L  +   +   +      + G  ++L+  P   +H+
Sbjct: 314 DPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHS 372
Query: 298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            +  E R   G+T  LVR+SVG+ED  DL++  ++AL
Sbjct: 373 RLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEAL 409

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 170/390 (43%), Gaps = 76/390 (19%)
Query: 21  DPYGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESXXXXXXXXXX 72
           D +GAL TP+Y  A F+  ++ E           + Y+RS NPT + LE           
Sbjct: 40  DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALG 99
Query: 73  XXCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSRKI----------------- 114
                SGMAA++ A+  L   G+ +V  D L+G T  L  + +                 
Sbjct: 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLA 159
Query: 115 ------------------------------AEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
                                         +++ HA G  L+VD ++  P L     LG 
Sbjct: 160 VEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------------YFLQNAE------- 184
           DI + S+TKFI+G    + GVL   G    K L              FL  A        
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 185 GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELH 244
           G  L+P + ++   G++TMALR+E+   NAQ++A +L S P+VK VN+  LP+ P + + 
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIA 339
Query: 245 YSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
             Q + AGS+L+F   S   S   ++  K      +    KSLI  P  + +A    E R
Sbjct: 340 KRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEER 399
Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKAL 334
               ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 400 LKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
           A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L     
Sbjct: 200 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 258
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 259 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 318
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 319 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 371
Query: 300 PVEVRQARGLTE-----DLVRISVGIEDVNDLISDLD 331
           P  +   R   E      L+R+ +G+EDV+DLI+DLD
Sbjct: 372 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 408

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
           A++++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L     
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 300 PVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 331
           P  +   R       +  L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN 182
           A++++DN+  + VL + L+ G D+ + +AT ++ GHSD M G  AV   R  ++L     
Sbjct: 180 AIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGT-AVCNARCWEQLRENAY 238
Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE
Sbjct: 239 LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHE 298
Query: 243 LHYSQAKGAGSVLSFLTGSLALSKHV---VETTKYFSITVSFGSVKSLISMPCFMSHASI 299
                  G+  + SF+      ++ +   ++    FS+  S+G  +SLI        A+ 
Sbjct: 299 FWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLIL-------ANQ 351
Query: 300 PVEVRQAR-----GLTEDLVRISVGIEDVNDLISDLD 331
           P  +   R       +  L+R+ +G+EDV+DLI+DLD
Sbjct: 352 PEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLD 388
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	0.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-173
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	1e-172
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	1e-165
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-164
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	1e-160
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-159
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-153
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-152
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-152
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-149
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-142
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	1e-133
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	1e-132
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-89
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	6e-87
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	7e-83
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	1e-43
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	1e-40
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	8e-17
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	2e-30
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	1e-29
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	1e-20
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	3e-26
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	4e-16
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	5e-04

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  539 bits (1391), Expect = 0.0
 Identities = 288/386 (74%), Positives = 319/386 (82%), Gaps = 47/386 (12%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDAL 60
           M+++EE  VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDAL
Sbjct: 79  MNIKEEASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDAL 138

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           ESLLAKLDKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS         
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVV 198

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                 RKI+EMAHA GAL+LVDNSIMS
Sbjct: 199 VKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMS 258

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDC
Sbjct: 259 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDC 318

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           W+CLRG+KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGS
Sbjct: 319 WLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGS 378

Query: 254 VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           V SF+TGS+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDL
Sbjct: 379 VFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDL 438

Query: 314 VRISVGIEDVNDLISDLDKALRTGPL 339
           VRIS GIEDV+DLISDLD A +T PL
Sbjct: 439 VRISAGIEDVDDLISDLDIAFKTFPL 464

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  485 bits (1252), Expect = e-173
 Identities = 140/382 (36%), Positives = 211/382 (55%), Gaps = 51/382 (13%)

Query: 5   EEPGVSTLLMNFSNEFDP--YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
                +T  ++   + +     A+  P+  + TFKQ +  ++  ++Y+RSGNPTR+ LE 
Sbjct: 15  HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEK 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------- 111
            +A LD A   L F SG+AA   +THLL  G++I+  DD+YGGT+R              
Sbjct: 75  AVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKIS 134

Query: 112 ------------------------------------RKIAEMAHAHGALLL-VDNSIMSP 134
                                                  A + H HG ++L VDN+ MSP
Sbjct: 135 FVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194

Query: 135 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW 194
              RPL LGADI M+SATK++ GHSDV+ G+++V  E L   L FLQN+ G+  +P DC+
Sbjct: 195 YFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCY 254

Query: 195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSV 254
           +C RG+KT+ +R+EK   N   +A+FL S+P V+KV Y GLP HP HEL   Q  G   +
Sbjct: 255 LCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGM 314

Query: 255 LSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL 313
           ++F + G+L  ++  ++  K F++  S G  +SL  +P  M+HAS+    R   G+++ L
Sbjct: 315 VTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTL 374

Query: 314 VRISVGIEDVNDLISDLDKALR 335
           +R+SVG+ED  DL+ DLD+AL+
Sbjct: 375 IRLSVGLEDEEDLLEDLDQALK 396

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  483 bits (1246), Expect = e-172
 Identities = 144/389 (37%), Positives = 212/389 (54%), Gaps = 55/389 (14%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S A   G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YGGT R  +         
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120

Query: 112 -------------------------------------RKIAEMAHAHGA----LLLVDNS 130
                                                +K+A++   H A    +L+VDN+
Sbjct: 121 TSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNT 180

Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP 190
            +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L FLQNA G+  +P
Sbjct: 181 FLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSP 240

Query: 191 FDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAK 249
           FD W+  RG+KT+ LRV +   +A KIAEFLA+    V  VNY GL  HP +++   Q +
Sbjct: 241 FDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300

Query: 250 GA--GSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA 306
            A  G ++SF + G    +     +T+ F++  S G ++SL+ +P  M+H  IP E R+A
Sbjct: 301 DALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREA 360

Query: 307 RGLTEDLVRISVGIEDVNDLISDLDKALR 335
            G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 361 SGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  465 bits (1199), Expect = e-165
 Identities = 133/378 (35%), Positives = 196/378 (51%), Gaps = 50/378 (13%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAK 66
             +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+
Sbjct: 4   KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAE 63

Query: 67  LDKADRALCFTSGMAALAAVTHL-LGTGEEIVAGDDLYGGTDRLLS-------------- 111
           L+    A+   +GM+A+  VT + L  G+ +VA  D YGG+ RL                
Sbjct: 64  LEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123

Query: 112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR 138
                                             KI  +A   GA+ +VDN+ +SP L  
Sbjct: 124 QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN 183

Query: 139 PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR 198
           PL LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LR
Sbjct: 184 PLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243

Query: 199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF- 257
           G++T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF 
Sbjct: 244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303

Query: 258 LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS 317
           L G     +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS
Sbjct: 304 LDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIS 363

Query: 318 VGIEDVNDLISDLDKALR 335
            GIED  DLI+DL+   R
Sbjct: 364 TGIEDGEDLIADLENGFR 381

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  463 bits (1195), Expect = e-164
 Identities = 149/382 (39%), Positives = 212/382 (55%), Gaps = 51/382 (13%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALES 62
           +    ++TL ++     DP  GA+  P+Y T+T+ Q S  E+  ++Y+R+ NPTR A E 
Sbjct: 15  DRALSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYER 74

Query: 63  LLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------- 111
            +A L+   RA  F SGMAA + V  LL  G  +VA DDLYGGT RL             
Sbjct: 75  CVAALEGGTRAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDF 134

Query: 112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSP 134
                                                  IA +A  HG L +VDN+  SP
Sbjct: 135 SFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASP 194

Query: 135 VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK-GERLAKELYFLQNAEGSGLAPFDC 193
           +L RPL LGAD+V+HSATK++ GHSD++ G+  V     LA+++ FLQN+ G    PFD 
Sbjct: 195 MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDS 254

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           ++ LRG+KT+ LR+    +NA  +A++L +HP ++KV Y GL  HP H L   Q  G G 
Sbjct: 255 FLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGG 314

Query: 254 VLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED 312
           ++S  L G    +K   E T+ F++  S G V+SL++ P  M+HASIPV  R+  G+++ 
Sbjct: 315 IVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDA 374

Query: 313 LVRISVGIEDVNDLISDLDKAL 334
           LVR+SVGIED+ DL  DL++AL
Sbjct: 375 LVRLSVGIEDLGDLRGDLERAL 396

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  451 bits (1163), Expect = e-160
 Identities = 141/382 (36%), Positives = 198/382 (51%), Gaps = 54/382 (14%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPS-ATENGPYDYTRSGNPTRDALE 61
               G++T  ++     DP  GA++ P+Y ++TF Q       G Y+Y R+GNPTR ALE
Sbjct: 13  HRFAGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALE 72

Query: 62  SLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------- 111
           + LA ++ A     F+SGMAA       +L  G+ +V  DD YGGT RL+          
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132

Query: 112 --------------------------------------RKIAEMAHAHGALLLVDNSIMS 133
                                                   IA++     A +LVDN+  S
Sbjct: 133 YTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS 192

Query: 134 PVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDC 193
           P L +PL LGAD+V+HS TK+I GHSDV+ G L    E L +   FLQN  G+   PFD 
Sbjct: 193 PALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDA 252

Query: 194 WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS 253
           ++ +RG+KT+ LR+++  +NA  +AEFLA HP +  V Y GLP HPGH +   Q +G G 
Sbjct: 253 YLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG 312

Query: 254 VLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTED 312
           ++S  +      ++ +   T  F +  S GSV+SLI  P  M+HAS          + +D
Sbjct: 313 MVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTA---GSQLEVPDD 369

Query: 313 LVRISVGIEDVNDLISDLDKAL 334
           LVR+SVGIEDV DL+ DL +AL
Sbjct: 370 LVRLSVGIEDVADLLDDLKQAL 391

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  449 bits (1158), Expect = e-159
 Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 57/371 (15%)

Query: 21  DP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGNPTRDALESLLAKLDKAD 71
           D    + + P++QT+TF   S  +           + Y+R GNPT +  E ++  ++ A 
Sbjct: 16  DHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAA 75

Query: 72  RALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------- 111
            +  F SGM A  ++    L  G+ ++AGD LYG T  L +                   
Sbjct: 76  GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE 135

Query: 112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELG 143
                                       + IA + H  GA L+VD +  SP   +PLELG
Sbjct: 136 KVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELG 195

Query: 144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM 203
           ADI +HS +K+I GH DV+ GV + K       + F +   GS +AP D ++C RG+KT+
Sbjct: 196 ADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTL 255

Query: 204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA 263
            +R++   +N  K+A+FL  H ++ KVN+ GL   PGH++   Q  G GS   F   S  
Sbjct: 256 PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFE 315

Query: 264 LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDV 323
            +K ++E  K  ++ VS G V +LI  P  M+HA++P  + + +G+T +LVRISVGIE+V
Sbjct: 316 AAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENV 375

Query: 324 NDLISDLDKAL 334
           +D+I+DL +AL
Sbjct: 376 DDIIADLKQAL 386

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  435 bits (1122), Expect = e-153
 Identities = 110/392 (28%), Positives = 178/392 (45%), Gaps = 62/392 (15%)

Query: 4   EEEPGVSTLLMNFSNEFDP---YGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
                  ++ ++            A++TP+  T+ +     +E           ++Y R 
Sbjct: 52  SFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRY 111

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  ++ L+ A+  L   SGM A    +  L+  G  IV   D Y  T   + 
Sbjct: 112 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 171

Query: 112 ------------------------------------------------RKIAEMAHAHGA 123
                                                             ++++ H  GA
Sbjct: 172 TILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGA 231

Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA 183
           L+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG +     +L  E+  L + 
Sbjct: 232 LVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCI-SGPLKLVSEIRNLHHI 290

Query: 184 EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL 243
            G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V Y GL  HP H +
Sbjct: 291 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI 350

Query: 244 HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 302
              Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  P  MS+  +   
Sbjct: 351 AKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 410

Query: 303 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 411 DRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 442

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  432 bits (1113), Expect = e-152
 Identities = 127/391 (32%), Positives = 202/391 (51%), Gaps = 59/391 (15%)

Query: 4   EEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTRSGN 54
            + PG +T  ++   +     GAL  P+YQTATF  P+              + Y+R  N
Sbjct: 5   NKLPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISN 64

Query: 55  PTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS-- 111
           PT + LE+ +A L+  +  L   SGM A  + +  LL  G+E++ G+ LYG T   L   
Sbjct: 65  PTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHG 124

Query: 112 ---------------------------------------------RKIAEMAHAHGALLL 126
                                                          +A++A  HGA ++
Sbjct: 125 IGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 184

Query: 127 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEG 185
           VDN+  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +  L  L++  G
Sbjct: 185 VDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTG 244

Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
           + L+P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L  
Sbjct: 245 AVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR 304

Query: 246 SQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR 304
            Q    G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R
Sbjct: 305 QQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEER 364

Query: 305 QARGLTEDLVRISVGIEDVNDLISDLDKALR 335
              G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 365 AHYGISEGLVRLSVGLEDIDDLLADVQQALK 395

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  432 bits (1113), Expect = e-152
 Identities = 125/395 (31%), Positives = 211/395 (53%), Gaps = 60/395 (15%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGP--------YDYTRS 52
           M+  E    +T  ++ + + D +GA   P+YQT+TF   +  + G         Y YTR 
Sbjct: 1   MA-HERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRL 59

Query: 53  GNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS 111
           GNPT   LE  +A L+K +  +  +SGM A  A V  +L  G+ +++ + LYG T  L  
Sbjct: 60  GNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE 119

Query: 112 -----------------------------------------------RKIAEMAHA-HGA 123
                                                           ++ + AH+  G 
Sbjct: 120 HALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGV 179

Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 182
           L++ DN+  SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +  +  +++
Sbjct: 180 LVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD 239

Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             GS ++P D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH+
Sbjct: 240 ITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHD 299

Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
           +   Q +  GS+++F L      +K +++  K  ++ VS G  +SLI  P  M+HA +P 
Sbjct: 300 IAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPK 359

Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT 336
           E R+A G+T+ ++R+SVGIED ++LI+D  + L  
Sbjct: 360 EEREAAGITDGMIRLSVGIEDADELIADFKQGLDA 394

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  424 bits (1093), Expect = e-149
 Identities = 140/394 (35%), Positives = 208/394 (52%), Gaps = 59/394 (14%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGP--------YDYTR 51
           MS     G +T +++   + DP  GALSTP++QT+TF   SA +           Y YTR
Sbjct: 1   MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTR 60

Query: 52  SGNPTRDALESLLAKLDKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLL 110
            GNPT DALE  LA L++ +  L   SG++A    +  L   G+ IV+   +YG T   L
Sbjct: 61  LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFL 120

Query: 111 S-----------------------------------------------RKIAEMAHAHGA 123
           S                                                 +A +AH  GA
Sbjct: 121 SHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGA 180

Query: 124 LLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN 182
           LL+VDN+ MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++
Sbjct: 181 LLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD 240

Query: 183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHE 242
             G  ++PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +E
Sbjct: 241 ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYE 300

Query: 243 LHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV 301
           L   Q    G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  
Sbjct: 301 LGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAP 360

Query: 302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           E R   G+T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 361 EERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  408 bits (1051), Expect = e-142
 Identities = 114/375 (30%), Positives = 180/375 (48%), Gaps = 61/375 (16%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
             +   +  +Y T+ +   SA         E   Y Y+R GNPT    E  L  ++ A  
Sbjct: 39  SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPA 98

Query: 73  ALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------- 111
           A    SGMAA   ++  LLG G+ +VA   L+G    + S                    
Sbjct: 99  AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158

Query: 112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA 144
                                        + E+AHA GA +++DN   +P+L +   LG 
Sbjct: 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGV 218

Query: 145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA 204
           D+V++S TK I G   V+ G +    E +   +  L    G  ++ F+ W+ L+G++T+A
Sbjct: 219 DVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA 278

Query: 205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLA 263
           +RV+    +AQ+IAEFL  HP V+ V Y  LP HP ++L   Q  G G+V++F L     
Sbjct: 279 IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED 338

Query: 264 LSK----HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
           ++K     V++  +   I+ + G  KSL++ P   +H ++  E R A GL + +VRISVG
Sbjct: 339 VAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG 398

Query: 320 IEDVNDLISDLDKAL 334
           +ED +DLI+D+D+AL
Sbjct: 399 LEDTDDLIADIDRAL 413

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  380 bits (979), Expect = e-133
 Identities = 120/326 (36%), Positives = 179/326 (54%), Gaps = 50/326 (15%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLS------ 111
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L        
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 112 -----------------------------------------RKIAEMAH-AHGALLLVDN 129
                                                        + A      L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 130 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAEGSGL 188
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK +   +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 248
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q 
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 249 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
           K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E R+A G
Sbjct: 242 KMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301

Query: 309 LTEDLVRISVGIEDVNDLISDLDKAL 334
           LT++L+R+SVG E+V D+I DL +AL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQAL 327

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  381 bits (982), Expect = e-132
 Identities = 89/392 (22%), Positives = 166/392 (42%), Gaps = 66/392 (16%)

Query: 6   EPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNP 55
           +  + T L+N         GA+++ + + ++    S            NG   Y R G  
Sbjct: 23  DKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTL 82

Query: 56  TRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLSR-- 112
           T  +L+  + +L+     + F  G AA+A ++   +  G+ ++  +  Y  +    S+  
Sbjct: 83  THFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKIL 142

Query: 113 ---------------------------------------------KIAEMAHA--HGALL 125
                                                         I     +    A++
Sbjct: 143 SKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAII 202

Query: 126 LVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG 185
           ++DN+  + VL + L+ G D+ + +ATK++ GHSD M G  AV   R  ++L       G
Sbjct: 203 MIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGT-AVCNARCWEQLRENAYLMG 261

Query: 186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY 245
             +     +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE   
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321

Query: 246 SQAKGAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE 302
               G+  + SF+     +     + ++    FS+  S+G  +SLI        A+I   
Sbjct: 322 RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR-- 379

Query: 303 VRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            +     +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 380 PQGEIDFSGTLIRLHIGLEDVDDLIADLDAGF 411

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  273 bits (701), Expect = 2e-89
 Identities = 114/414 (27%), Positives = 177/414 (42%), Gaps = 83/414 (20%)

Query: 1   MSVEEEPGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYT 50
                  G +T  ++        +GAL TP+Y  A F+  ++            G + Y+
Sbjct: 19  YFQGHMRGFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALG-HVYS 77

Query: 51  RSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRL 109
           RS NPT + LE  L  L  A   L   SGMAA++ A+  L   G+ +V  D L+G T  L
Sbjct: 78  RSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSL 137

Query: 110 LS-----------------------------------------------RKIAEMAHAHG 122
                                                              ++++ HA G
Sbjct: 138 FQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKG 197

Query: 123 ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG------------ 170
             L+VD ++  P L     LG DI + S+TKFI+G    + GVL   G            
Sbjct: 198 IPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAP 257

Query: 171 --ERLAKELY-------FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFL 221
              +     +         QN  G  L+P + ++   G++TMALR+E+   NAQ++A +L
Sbjct: 258 YYAKAGPMAFLYKARKEVFQN-LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWL 316

Query: 222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVS 280
            S P+VK VN+  LP+ P + +   Q + AGS+L+F L    A S   ++  K      +
Sbjct: 317 LSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEA-SYRFMDALKLIRRATN 375

Query: 281 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
               KSLI  P  + +A    E R    ++  ++R+SVGIE++ DL  D+ +AL
Sbjct: 376 IHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  266 bits (683), Expect = 6e-87
 Identities = 108/399 (27%), Positives = 166/399 (41%), Gaps = 87/399 (21%)

Query: 21  DPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADR 72
           DP+GA+  P+Y  A +   +            G Y Y R  +PT  ALE  L  L+ A  
Sbjct: 15  DPHGAVGLPIYAVAAYGFKTLEEGQERFATGEG-YVYARQKDPTAKALEERLKALEGALE 73

Query: 73  ALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------- 111
           A+   SG AA   A+  LL  G+E+VA   L+G T  L                      
Sbjct: 74  AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPEAV 133

Query: 112 --------------------------RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 144
                                       +A +A   G  L+VDN+   +  L RPL  GA
Sbjct: 134 REALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGA 193

Query: 145 DIVMHSATKFIAGHSDVMAGVL---------------------AVKGERLAKELY----- 178
            +V+ S TK+ +GH  V+ G +                      +  E L    +     
Sbjct: 194 HVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR 253

Query: 179 --FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 236
              L    G  L+PF+ ++  +G++T+ALRV +  + A+ +AE L  HP+VK + Y GLP
Sbjct: 254 TLGLSLC-GMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLP 312

Query: 237 EHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH 296
           E P H          G +L+   G L  +   +   +      + G  ++L+  P   +H
Sbjct: 313 EDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLKA-ANLGDARTLLVHPWTTTH 371

Query: 297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           + +  E R   G+T  LVR+SVG+ED  DL++  ++AL 
Sbjct: 372 SRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  256 bits (657), Expect = 7e-83
 Identities = 116/405 (28%), Positives = 170/405 (41%), Gaps = 97/405 (23%)

Query: 24  GALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
            +   P+Y T ++   S           E G   Y+R  NPT D LE  LA L+    AL
Sbjct: 19  LSRQVPIYPTTSYVFKSPEHAANLFALKEFG-NIYSRIMNPTVDVLEKRLAALEGGKAAL 77

Query: 75  CFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS---------------------- 111
              SG AA   A+T L   G+ IV+  +LYGGT                           
Sbjct: 78  ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEF 137

Query: 112 --------------------------RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGA 144
                                       +A+ A   G  L+VDN+  M   L RPL  GA
Sbjct: 138 LALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGA 197

Query: 145 DIVMHSATKFIAGHSDVMAGVL-------------------------AVKGERLAKELYF 179
            +V HS TK++ GH  V+AG +                             E    EL F
Sbjct: 198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG-ELAF 256

Query: 180 LQNA-------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNY 232
           +  A       +G  L PF+ W+ L G++T++LR E+  +N   +A +L   P+V  VNY
Sbjct: 257 IVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNY 316

Query: 233 AGLPEHPGHEL--HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLIS 289
            GLP HP H+    Y +    G+VL+F L G    +K  +   K  S   + G  ++L  
Sbjct: 317 PGLPHHPHHDRAQKYFK-GKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAI 375

Query: 290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
            P   +H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 376 HPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  153 bits (387), Expect = 1e-43
 Identities = 55/330 (16%), Positives = 97/330 (29%), Gaps = 69/330 (20%)

Query: 48  DYTRSGNPTR--DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGG 105
            Y  S       +         D+ D+ + F    +A+ A    L   + I    +L G 
Sbjct: 52  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 111

Query: 106 TDRLLS--------------------------------------------RKIAEMAHAH 121
                S                                            +K+   A   
Sbjct: 112 PSIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNK 171

Query: 122 GALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE 176
            A++ VD++  + V         L+LGAD+V+ S  K + G      G+LA K E L  +
Sbjct: 172 EAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RGGLLAGKKE-LVDK 227

Query: 177 LYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIA----EFLASHPR-VKKV 230
           +Y      G    P       R +K   L R+ K  + A+       E L    + +   
Sbjct: 228 IYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDN 287

Query: 231 NYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSF--GSVKSL 287
                   P   +     K      +  +   + +  ++++     +ITV+   G+ KSL
Sbjct: 288 INIVYERTPTGFVIKRVYKDD----TINIKKLIEIGFNLLKNYGIITITVAGMPGASKSL 343

Query: 288 ISMPCFMSHASIPVEVRQARGLTEDLVRIS 317
                      I         + E +    
Sbjct: 344 RIDLTSRDAERIDDNYIIK-AIVESIKMAF 372

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  146 bits (371), Expect = 1e-40
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 112 RKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 168
           +++           ++ VDN     +    P  +GAD++  S  K   G      G +  
Sbjct: 189 KEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVG 248

Query: 169 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRV 227
           K +   +   +   + G G         L+ +             A K A F A+   ++
Sbjct: 249 KEQ-YVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFTAAFLEKL 307

Query: 228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSF 257
                          +   Q      +++F
Sbjct: 308 GMNTSPAWNAPRTDLIQSVQFDDKDRMIAF 337

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score = 79.8 bits (197), Expect = 8e-17
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA-AVTHL 89
           +               Y Y   G  T + + + +   +         SG  A++ A+  +
Sbjct: 44  FGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI 103

Query: 90  LGTGEEIVAGDDLYGGT 106
           L  G+E++        T
Sbjct: 104 LRPGDELLYITGKPYDT 120

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  118 bits (297), Expect = 2e-30
 Identities = 47/268 (17%), Positives = 70/268 (26%), Gaps = 81/268 (30%)

Query: 46  PYDYTRSGNPTRDALESLLAKLDKADRALCFTSG--------MAALAAVTHLL------- 90
            Y Y   G  T + + + + K + A       SG           L     LL       
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 91  GTGEEIVAGDDLYGG--------------------------------------------- 105
            T EEIV       G                                             
Sbjct: 113 DTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYA 172

Query: 106 TDRLLS----RKIAEMAHAHG--ALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGH 158
                +    +++           ++ VDN     V    P E+GADI+  S  K   G 
Sbjct: 173 DRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGG 232

Query: 159 SDVMAGVLAVKGERLAKELYFLQNAEG----SGLAPFDCWICLRGVKTMALRVEKQQDNA 214
                G +A K   L     +     G    +G + +      +G   +A  V  Q   A
Sbjct: 233 LAKTGGYIAGKEA-LVDLCGYRLTTPGIGREAGASLYSLLEMYQGF-FLAPHVTAQ---A 287

Query: 215 QKIAEFLASHPRVKKVNYAGLPEHPGHE 242
            K A F A       +   G+   P  +
Sbjct: 288 IKGARFTA-----AMLAEFGVEADPVWD 310

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  116 bits (293), Expect = 1e-29
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 9/139 (6%)

Query: 112 RKIAEMAHA--HGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIAGHSDVMAGVLAV 168
            +I +         ++ VDN     V  + P ++GADI+  S  K I G      G +A 
Sbjct: 200 AEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAG 259

Query: 169 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK 228
           K E    +  F     G G      +  +R +             A K A F A    + 
Sbjct: 260 KEE-YVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKGAVFCARIMEL- 317

Query: 229 KVNYAGLPEHPGHELHYSQ 247
               AG    P +    + 
Sbjct: 318 ----AGFDVLPKYNDKRTD 332

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 29  PLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVT 87
             +Q     +   T +  Y Y   G  + D + + +   + A     F +G  A+ AA+ 
Sbjct: 51  KAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALF 110

Query: 88  HLLGTGEEIVA--------GDDLYGGTDRLLSRKIAE 116
             L   + +++          D+ G  D      + E
Sbjct: 111 GNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE 147

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  107 bits (268), Expect = 3e-26
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 112 RKIAEMAHA--HGALLLVDNSIMSPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAV 168
           + I +         +  VDN     +    P ++GAD++  S  K I G      G LA 
Sbjct: 200 KSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAG 259

Query: 169 KGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHP 225
             +   ++  +     G G      +  +R +     +A  +  +   A K A   +   
Sbjct: 260 TKD-CIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISME---ALKGAILCSRI- 314

Query: 226 RVKKVNYAGLPEH 238
            ++   +  +P++
Sbjct: 315 -MELAGFEVMPKY 326

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score = 77.9 bits (192), Expect = 4e-16
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 31  YQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHL 89
           +Q     +   T +  Y Y   G  + DA+ + +   + A     F +G  AL AA+   
Sbjct: 52  FQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN 111

Query: 90  LGTGEEIVAG--------DDLYGGTDRLLSRKIAEM 117
           L  G  +++          D+ G T+      + E 
Sbjct: 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEF 147

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 33/134 (24%)

Query: 46  PYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDL 102
           P         T +     + +  K             LA +T+     G   ++      
Sbjct: 121 PKTDYPDYAITPENFAQTIEETKKRGEV--------VLALITYPDGNYGNLPDV------ 166

Query: 103 YGGTDRLLSRKIAEMAHAHGALLLVDNSIMSPVLSRPL---ELGADIVMHSATKFIAGHS 159
                    +KIA++   +   LLV+ +     +  P+   E+GAD ++ S  K +A  +
Sbjct: 167 ---------KKIAKVCSEYDVPLLVNGAYAIGRM--PVSLKEIGADFIVGSGHKSMA--A 213

Query: 160 DVMAGVLAVKGERL 173
               GV+ +K E  
Sbjct: 214 SGPIGVMGMKEEWA 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 55/363 (15%), Positives = 101/363 (27%), Gaps = 108/363 (29%)

Query: 42  TENGPYDYTRSGNPTRDALESLLAK----LDKADRALCFTSGMAALAAVTHLLGTGEEIV 97
            E G + Y       +D L           D  D        + +   + H++ + + + 
Sbjct: 9   FETGEHQYQ-----YKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 98  AGDDLYGGTDRLLSRKIAEMAHAHGALLLVDNS--IMSPVLSRPLELGADIVMHSATKFI 155
               L+      L  K  EM       +L  N   +MSP+ +   +      M+   +  
Sbjct: 63  GTLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-- 116

Query: 156 AGHSDVMAGVLAV----------KGERLAKELYFLQNAE--------GSG---LA----- 189
               D +     V             +L + L  L+ A+        GSG   +A     
Sbjct: 117 ----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 190 --PFDC-------WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPG 240
                C       W+ L+   +    +E  Q    +I             N+    +H  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-----------NWTSRSDHSS 221

Query: 241 H-ELHYSQAKGAGSVL----SFLTGSLAL----SKHVVE----------TTKYFSITVSF 281
           + +L     +     L     +    L L    +               TT++  +T   
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 282 GSVKSLISMPCFMSHASIPVEVRQARGLTED----LVRISVGIEDVNDLISDL-DKALRT 336
            +           +H S+      +  LT D    L+   +          DL  + L T
Sbjct: 282 SAAT--------TTHISL---DHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREVLTT 325

Query: 337 GPL 339
            P 
Sbjct: 326 NPR 328

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 39/285 (13%), Positives = 89/285 (31%), Gaps = 54/285 (18%)

Query: 58  DALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLSRKIAEM 117
           + +E+ + K  +     C             +L T             +D +   +IA++
Sbjct: 217 EDIENAIKKEIELGNRPC-------------VLST-----LTFFPPRNSDDI--VEIAKI 256

Query: 118 AHAHGALLLVDNSIMSPV------LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
              +    +++ +           L +  +   D V+ S+ K     + +  G++     
Sbjct: 257 CENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKN--LLTPIGGGLVYSTDA 314

Query: 172 RLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKK 229
              KE+        S     +  + L   G K     V+ Q+++ + + E L    +   
Sbjct: 315 EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK--- 371

Query: 230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS 289
                  +  G  L       +   ++     +A   + +  T    I  +       + 
Sbjct: 372 -------KTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLG 424

Query: 290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
                +H  I +    A G+           ED+ + +S L+K L
Sbjct: 425 T---YTHDYIVMNA--AIGVRT---------EDIVNSVSKLEKIL 455

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.95
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.95
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.95
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.91
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.91
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.89
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.89
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.88
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.88
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.88
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.88
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.88
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.87
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.87
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.87
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.87
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.87
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.86
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.86
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.86
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.86
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.86
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.85
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.85
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.85
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.85
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.85
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.84
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.84
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.84
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.84
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.84
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.84
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.84
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.83
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.83
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.83
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.83
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.83
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.83
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.83
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.83
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.83
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.83
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.83
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.82
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.82
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.82
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.82
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.82
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.82
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.82
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.82
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.82
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.82
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.82
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.82
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.81
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.81
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.81
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.81
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.81
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.81
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.81
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.81
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.81
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.81
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.81
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.81
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.81
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.81
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.81
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.81
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.8
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.8
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.8
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.8
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.8
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.8
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.8
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.8
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.8
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.8
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.79
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.79
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.79
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.79
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.79
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.79
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.79
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.79
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.79
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.78
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.78
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.78
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.78
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.78
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.78
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.77
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.77
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.77
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.77
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.77
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.77
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.77
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.77
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.77
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.77
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.76
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.76
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.76
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.76
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.75
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.75
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.75
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.75
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.75
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.75
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.75
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.75
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.75
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.74
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.74
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.74
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.74
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.74
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.73
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.73
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.72
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.72
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.72
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.72
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.71
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.71
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.7
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.7
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.7
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.69
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.69
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.69
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.69
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.69
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.68
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.51
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.68
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.67
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.67
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.67
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.67
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.67
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.66
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.66
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.66
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.66
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.66
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.66
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.65
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.65
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.65
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.65
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.64
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.64
1svv_A	359	Threonine aldolase; structural genomics, structura	99.64
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.64
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.63
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.63
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.63
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.63
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.62
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.62
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.62
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.62
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.62
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.62
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.61
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.61
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.61
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.61
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.61
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.61
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.61
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.6
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.6
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.6
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.59
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.59
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.59
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.58
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.57
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.57
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.56
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.56
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.55
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.55
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.55
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.55
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.55
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.54
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.5
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.5
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.5
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.49
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.46
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.44
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.44
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.43
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.11
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.31
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.3
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.26
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.26
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.21
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.18
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.15
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.04
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.04

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=4.3e-56  Score=426.26  Aligned_cols=331  Identities=44%  Similarity=0.716  Sum_probs=305.6

Q ss_pred             CCCCccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHH
Q 019543            5 EEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~   83 (339)
                      .+++++|+++|++...+ .++++++|||++++|.+++..+..+|.|+|.++|..++||++|++++|.+++++++||++|+
T Consensus        16 ~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai   95 (400)
T 3nmy_A           16 RALSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAAT   95 (400)
T ss_dssp             -CCCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTBSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHH
T ss_pred             cCCCcchheeeCCCCCCCCCCCcCCCccccceeeccCccccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHH
Confidence            45688999999997665 48999999999999999988777889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCccchHHH-----HH-------------------------------------------HHHH
Q 019543           84 AAVTHLLGTGEEIVAGDDLYGGTDRL-----LS-------------------------------------------RKIA  115 (339)
Q Consensus        84 ~~il~ll~~GD~Vi~~~~~y~~~~~~-----~~-------------------------------------------~~I~  115 (339)
                      .+++.++++||+|+++++.|+++...     +.                                           ++|+
T Consensus        96 ~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~  175 (400)
T 3nmy_A           96 STVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIA  175 (400)
T ss_dssp             HHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred             HHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHH
Confidence            87777899999999999999876543     21                                           9999


Q ss_pred             HHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEE-EEEEcChhHHHHHHHHHHhcCCCCChHHHH
Q 019543          116 EMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAG-VLAVKGERLAKELYFLQNAEGSGLAPFDCW  194 (339)
Q Consensus       116 ~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG-~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~  194 (339)
                      ++|++||+++|+|++|+++....++..++|++++|++|+++|+++.+|| +++++++++.+.++.....++..++|+.++
T Consensus       176 ~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~  255 (400)
T 3nmy_A          176 VIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSF  255 (400)
T ss_dssp             HHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHH
T ss_pred             HHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            9999999999999999988777788889999999999999999888999 777777788888888887889999999999


Q ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCC
Q 019543          195 ICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK  273 (339)
Q Consensus       195 ~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~  273 (339)
                      +++++++++..|++++.+|+++++++|+++|.|..|.||+++++|+|++++++++|.|++++|++.+ .+.+.+|+++|+
T Consensus       256 ~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~  335 (400)
T 3nmy_A          256 LALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTE  335 (400)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCS
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999954 466889999999


Q ss_pred             cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       274 ~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .+++++|+|+.+|++.+|+.++|..++++.+.++|+.+++||+|+|+|+++|+|++|.+||+
T Consensus       336 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~  397 (400)
T 3nmy_A          336 LFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV  397 (400)
T ss_dssp             SSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             cceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999997

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=1.7e-56  Score=432.45  Aligned_cols=327  Identities=33%  Similarity=0.451  Sum_probs=257.4

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      .++|+++|++...+ .++++.+|||+|+||.+++.++        ..+|.|+|.++|++++||+++++++|.+.+++++|
T Consensus        26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~s  105 (430)
T 3ri6_A           26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLALGS  105 (430)
T ss_dssp             CHHHHHHCCC--------------------------------------------CCHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred             CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEEEECC
Confidence            36899999987654 4899999999999999987642        35689999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHhcCCCCEEEEcCCCccchHHHH----H------------------------------------------
Q 019543           79 GMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL----S------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~----~------------------------------------------  111 (339)
                      |++|+.+ +.++++|||+|+++++.|+++...+    .                                          
T Consensus       106 G~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~~e~p~NptG~~~d  185 (430)
T 3ri6_A          106 GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLFLETISNPQLQVAD  185 (430)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCCeecC
Confidence            9999985 4568999999999999998877633    1                                          


Q ss_pred             -HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh-hH----------------
Q 019543          112 -RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE-RL----------------  173 (339)
Q Consensus       112 -~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~l----------------  173 (339)
                       ++|+++|++||++||+|++|+.+...++...|+|++++|+||+++|+++.+||+++.+.. .+                
T Consensus       186 l~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~  265 (430)
T 3ri6_A          186 LEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPM  265 (430)
T ss_dssp             HHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchh
Confidence             999999999999999999999998888888899999999999999998899999986432 12                


Q ss_pred             --HHHHHH-HHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCC
Q 019543          174 --AKELYF-LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKG  250 (339)
Q Consensus       174 --~~~l~~-~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~  250 (339)
                        +.+++. ....+|..++|+.+++++++++++..|++++.+|+++++++|+++|+|+.|.||+++++|+|+++++++ |
T Consensus       266 ~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~-g  344 (430)
T 3ri6_A          266 AFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQF-R  344 (430)
T ss_dssp             HHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHC-S
T ss_pred             hHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhC-C
Confidence              222222 234578889999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             Ccc-eEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHH
Q 019543          251 AGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  329 (339)
Q Consensus       251 ~~~-ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~  329 (339)
                      .|+ +++|++++.+.+.+|+++|+.+++++|+|+.+|++++|++++|+.++++++++.|+.+++||+|||+|+.+|+|++
T Consensus       345 ~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~d  424 (430)
T 3ri6_A          345 YAGSILTFELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKED  424 (430)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHH
T ss_pred             CCceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH
Confidence            999 9999998888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 019543          330 LDKALR  335 (339)
Q Consensus       330 l~~al~  335 (339)
                      |.+||+
T Consensus       425 l~~al~  430 (430)
T 3ri6_A          425 ILQALC  430 (430)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999985

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3e-54  Score=415.20  Aligned_cols=330  Identities=34%  Similarity=0.554  Sum_probs=299.5

Q ss_pred             CCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      .++++|+++|++...+.++++.+|||+|++|.+++.+        ...+|.|+|+.+|..++||+++++++|.+++++++
T Consensus        24 ~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~  103 (414)
T 3ndn_A           24 GVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFATA  103 (414)
T ss_dssp             TCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEEC
Confidence            4678999999997767789999999999999998763        34679999999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      ||++|+.+ +..+++|||+|+++++.|+++...+.                                             
T Consensus       104 sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~le~p~NptG~~~  183 (414)
T 3ndn_A          104 SGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFFETPSNPMQSLV  183 (414)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEEECCCCCCCccc
Confidence            99999985 44589999999999999998765442                                             


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  189 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~  189 (339)
                        ++|+++|++||++||+|++|+++....++..++|++++|+||+++++|+.++|+++++++.+.+.++.....+|..++
T Consensus       184 ~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~  263 (414)
T 3ndn_A          184 DIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMS  263 (414)
T ss_dssp             CHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCC
T ss_pred             cHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCC
Confidence              999999999999999999999887777778889999999999999988788999998764333366666667788899


Q ss_pred             hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-----HHH
Q 019543          190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-----LAL  264 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-----~~~  264 (339)
                      +..+++++++++++..|++++.+|+++++++|+++|.+..+.||+++++|+|++++++++|.|++++|.+.+     .+.
T Consensus       264 ~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~  343 (414)
T 3ndn_A          264 AFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQR  343 (414)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999954     677


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.+|+++|+.+++++|+|+.+|++++|+.++|+.++++.+.++|+.+++||||+|+|+.+|+|++|.+||+
T Consensus       344 ~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~  414 (414)
T 3ndn_A          344 AFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS  414 (414)
T ss_dssp             HHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999984

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=4.5e-51  Score=395.91  Aligned_cols=333  Identities=33%  Similarity=0.555  Sum_probs=298.9

Q ss_pred             CCCCCc-cceeeccCCCCC---CCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCC
Q 019543            4 EEEPGV-STLLMNFSNEFD---PYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKAD   71 (339)
Q Consensus         4 ~~~~~~-~~~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~   71 (339)
                      ...+.| +|+++|++...+   .++++.+|||+|+||.+++.++        ..+|.|+|..+|..++||+++++++|++
T Consensus        51 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g~~  130 (445)
T 1qgn_A           51 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAE  130 (445)
T ss_dssp             CTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCS
T ss_pred             cccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhCCC
Confidence            345667 899999987654   4899999999999999987542        3578999999999999999999999999


Q ss_pred             eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------
Q 019543           72 RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------  111 (339)
                      ++++|+||++|+.+++ .++++||+|+++++.|+++..++.                                       
T Consensus       131 ~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~le~p~  210 (445)
T 1qgn_A          131 STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPT  210 (445)
T ss_dssp             EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSC
T ss_pred             cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEEeCCC
Confidence            9999999999998644 588999999999999988765421                                       


Q ss_pred             ---------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH
Q 019543          112 ---------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN  182 (339)
Q Consensus       112 ---------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~  182 (339)
                               ++|.++|++||+++++|++|+.++...++..++|++++|+||+++|++++++|++++++ ++++.++....
T Consensus       211 NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~-~l~~~l~~~~~  289 (445)
T 1qgn_A          211 NPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL-KLVSEIRNLHH  289 (445)
T ss_dssp             TTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH-HHHHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECH-HHHHHHHHHHH
Confidence                     99999999999999999999988777777789999999999999998877889999875 68888877777


Q ss_pred             hcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-
Q 019543          183 AEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-  261 (339)
Q Consensus       183 ~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-  261 (339)
                      .+|..++|..+++++++++++..|++++.++++++.++|+++|++..+.||+++++|+|+++++++++.+++++|.+++ 
T Consensus       290 ~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~  369 (445)
T 1qgn_A          290 ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD  369 (445)
T ss_dssp             HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC
T ss_pred             HhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC
Confidence            7888899999998899999999999999999999999999999998899999999999999999998899999999854 


Q ss_pred             HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          262 LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       262 ~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .+.+.+|++.|+.+++++|+|+.+|++.+|+.++|..++.+.+..+|++++.||||+|.|+.+++|++|.++|+++
T Consensus       370 ~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~  445 (445)
T 1qgn_A          370 LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  445 (445)
T ss_dssp             HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999999764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=5.7e-51  Score=392.35  Aligned_cols=325  Identities=26%  Similarity=0.448  Sum_probs=289.1

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCC--------C-CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------E-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~--------~-~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      +++|+++|++...+ .++++.+|||+|+||.+++.+        + ..+|.|+|.++|++++||+++|+++|++++++|+
T Consensus        25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~s  104 (415)
T 2fq6_A           25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP  104 (415)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeC
Confidence            57899999987654 489999999999999998753        1 3569999999999999999999999999999999


Q ss_pred             cHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      ||++|+.+++ .+++|||+|+++++.|+++...+.                                             
T Consensus       105 sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~e~~~NptG~v~  184 (415)
T 2fq6_A          105 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  184 (415)
T ss_dssp             SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEEECCCCCCCEee
Confidence            9999998654 588999999999999998875542                                             


Q ss_pred             --HHHHHHHHH--cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC
Q 019543          112 --RKIAEMAHA--HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  187 (339)
Q Consensus       112 --~~I~~la~~--~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~  187 (339)
                        ++|+++|++  ||+++++|++|+.++...++..++|++++|+||+++++++.++|++++++ ++++.++..++.+|..
T Consensus       185 dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~-~~~~~l~~~~~~~G~~  263 (415)
T 2fq6_A          185 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLRENAYLMGQM  263 (415)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCH-HHHHHHHHHHHhcCCC
Confidence              999999999  99999999999988777788889999999999999999888889999886 5778888777777888


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LAL  264 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~~  264 (339)
                      ++|..++++++++++++.|++++.+|+++++++|+++|.+..+.||+++++|+|+++++++++.+++++|.+++   .++
T Consensus       264 ~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~  343 (415)
T 2fq6_A          264 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE  343 (415)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred             CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHH
Confidence            99999998889999999999999999999999999999999999999999999999998888889999999965   567


Q ss_pred             HHHHHccCCcceeecccCCcccceec--cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISM--PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~--p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.+|++.|+.+++++|+|+.+|++.+  |+.++|....    +.+|+.+++||||+|.|+++|+|++|.+||+++
T Consensus       344 ~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~----~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~  414 (415)
T 2fq6_A          344 LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ----GEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  414 (415)
T ss_dssp             HHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTT----CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCcCeEeccCCCCceeEEecCCCccccccch----hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence            89999999999999999999999988  8877764310    246778899999999999999999999999864

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=5.8e-50  Score=382.72  Aligned_cols=326  Identities=43%  Similarity=0.721  Sum_probs=296.3

Q ss_pred             CCccceeeccCCCCCC-CCCccccccccceeeCCCCCCC-CCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHH
Q 019543            7 PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALA   84 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~~~~~~~-~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~   84 (339)
                      .+++|+++|++..+++ ++++.+|||++++|.+++..+. .+|.|+|..+|..++||+++++++|.+++++++||++|+.
T Consensus        16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~   95 (392)
T 3qhx_A           16 AGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAAD   95 (392)
T ss_dssp             CCHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTTCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHH
T ss_pred             CCcchhheeCCCCCCCCCCCccCCcccCcceEecCcccccCCccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence            3678999999976654 8999999999999999877643 4799999999999999999999999999999999999998


Q ss_pred             HH-HHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHH
Q 019543           85 AV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAE  116 (339)
Q Consensus        85 ~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~  116 (339)
                      ++ ..++++||+|+++++.|+++...+.                                               ++|.+
T Consensus        96 ~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~  175 (392)
T 3qhx_A           96 CALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQ  175 (392)
T ss_dssp             HHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHH
Confidence            64 4588999999999999988765542                                               99999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH
Q 019543          117 MAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC  196 (339)
Q Consensus       117 la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~  196 (339)
                      +|++||+++|+|++|+.++..++...++|++++|+||+++++++.++|+++++++++.+.++.....++..++|..++++
T Consensus       176 la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~  255 (392)
T 3qhx_A          176 LGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLT  255 (392)
T ss_dssp             HHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999998887788888999999999999999887889999998767888888877778999999999999


Q ss_pred             HhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcc
Q 019543          197 LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYF  275 (339)
Q Consensus       197 ~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~  275 (339)
                      +++++++..|++++.+++++++++|++++.+..+.||+++++|+|+++++++++.|++++|.+.+ .+.+.+|++.|+.+
T Consensus       256 ~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~  335 (392)
T 3qhx_A          256 MRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIF  335 (392)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSS
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999854 67788999999999


Q ss_pred             eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ++++|+|+.++++++|..++|..++.+   .+|+.+++||||+|.|+++++|++|.+||+
T Consensus       336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~  392 (392)
T 3qhx_A          336 ILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG  392 (392)
T ss_dssp             EECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             eECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence            999999999999999999999887754   788999999999999999999999999984

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=4.3e-48  Score=371.14  Aligned_cols=331  Identities=42%  Similarity=0.721  Sum_probs=285.1

Q ss_pred             CCCccceeeccCCCCC-CC-CCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHH
Q 019543            6 EPGVSTLLMNFSNEFD-PY-GALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL   83 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~-~~-~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~   83 (339)
                      .++++|+++|+|...+ .+ +++.+|||++|||.+++..+..+|.|+|+.+|..++||+++++++|.+++++++||++|+
T Consensus        16 ~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai   95 (403)
T 3cog_A           16 FQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAAT   95 (403)
T ss_dssp             CTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------CHHHHHHHHHHHHHHTCSEEEEESCHHHHH
T ss_pred             cCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHH
Confidence            3578899999987644 46 899999999999999877666678999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHH
Q 019543           84 AAVTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAE  116 (339)
Q Consensus        84 ~~il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~  116 (339)
                      .+++.++++||+|+++++.|+++...+.                                               ++|++
T Consensus        96 ~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~  175 (403)
T 3cog_A           96 VTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAH  175 (403)
T ss_dssp             HHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHH
Confidence            8654488999999999999988654321                                               99999


Q ss_pred             HHHHcC-CEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH
Q 019543          117 MAHAHG-ALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  195 (339)
Q Consensus       117 la~~~g-~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~  195 (339)
                      +|++|| +++|+|++|+.+....++..++|++++|+||+++|++++++|+++++++++.+.++.....++..++++.+++
T Consensus       176 la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~  255 (403)
T 3cog_A          176 IVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYL  255 (403)
T ss_dssp             HHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             HHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            999999 9999999999887767777889999999999999988777899998766788888877777788889999999


Q ss_pred             HHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCc
Q 019543          196 CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKY  274 (339)
Q Consensus       196 ~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~  274 (339)
                      +.+++++++.|++++.+|+..+++++++++.|+.+.+|+++++|+++++.++.++.+++++|.+. ..+.+.+|+++++.
T Consensus       256 ~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i  335 (403)
T 3cog_A          256 CNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKL  335 (403)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCc
Confidence            89999999999999999999999999999999999999999999999988887788999999984 45667889999988


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +..++|+|+.+|++.+|+.++|..++.+.+..+|++++.||||+|.|+.+++|++|.++|++
T Consensus       336 ~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~  397 (403)
T 3cog_A          336 FTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA  397 (403)
T ss_dssp             SEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             ceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            88899999999999999999999999889999999899999999999999999999999975

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=1.5e-47  Score=365.59  Aligned_cols=331  Identities=38%  Similarity=0.641  Sum_probs=295.7

Q ss_pred             CCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      +.+++|+++|++ ..+.++++.+|||+++||.+++.+        ...+|.|+|..+|..++||+++++++|.+++++++
T Consensus         3 ~~~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~   81 (389)
T 3acz_A            3 AQDITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFG   81 (389)
T ss_dssp             CCCHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CCCcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEeC
Confidence            356889999998 444589999999999999998753        23578999999999999999999999999999999


Q ss_pred             cHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH----H-----------------------------------------
Q 019543           78 SGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL----S-----------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~----~-----------------------------------------  111 (339)
                      ||++|+.+++ .++++||+|+++++.|+++...+    +                                         
T Consensus        82 sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~  161 (389)
T 3acz_A           82 SGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVS  161 (389)
T ss_dssp             SHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEEESSCTTTCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCeec
Confidence            9999998655 47899999999999999865542    2                                         


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA  189 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~  189 (339)
                        ++|.++|++||+++|+|++|+.+....++..++|++++|+||+++++++++||+++++++++++.++.....+|..++
T Consensus       162 ~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~  241 (389)
T 3acz_A          162 DIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA  241 (389)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCC
T ss_pred             CHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCC
Confidence              999999999999999999999887767777889999999999999998877789998863678888777766788889


Q ss_pred             hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHH
Q 019543          190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVV  269 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~  269 (339)
                      |..+++++++++.+..|++++.++++.++++|++++.++.+.+|.++++|+++++.++.++.+++++|.+.+.+...+++
T Consensus       242 ~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l  321 (389)
T 3acz_A          242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLM  321 (389)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887888999999996666778899


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.++.+...+|+|+.+|++.+|+.++|..++.+.+...|++++.||+|+|.|+.+++|++|.++|+++
T Consensus       322 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~  389 (389)
T 3acz_A          322 EHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW  389 (389)
T ss_dssp             TTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred             HhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence            99988889999999999999999999999999999999999999999999999999999999999864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=2.2e-46  Score=358.06  Aligned_cols=334  Identities=42%  Similarity=0.706  Sum_probs=291.6

Q ss_pred             CCCCCccceeeccCCCCCCCCCccccccccceeeCCCCCCC-CCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHH
Q 019543            4 EEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATEN-GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAA   82 (339)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~-~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A   82 (339)
                      .+..+++|+++|.+...+.++++.+|||+++||.+++..+. ..|.|+|..++..++||+++|+++|.+++++|+||++|
T Consensus         3 ~~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a   82 (393)
T 1n8p_A            3 QESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSAT   82 (393)
T ss_dssp             CSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHH
T ss_pred             CCCCCccceEEecCCCccCCCCcCCCcccccceeeccccccccCcceecCCChhHHHHHHHHHHHhCCCcEEEECChHHH
Confidence            34567899999998755568999999999999999876543 57899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCEEEEcCCCccchHHHH---------------------H-------------------------HHHHH
Q 019543           83 LAAVTHLLGTGEEIVAGDDLYGGTDRLL---------------------S-------------------------RKIAE  116 (339)
Q Consensus        83 ~~~il~ll~~GD~Vi~~~~~y~~~~~~~---------------------~-------------------------~~I~~  116 (339)
                      +.+++.++++||+|+++++.|+++...+                     +                         ++|.+
T Consensus        83 ~~~al~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~  162 (393)
T 1n8p_A           83 TATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVAD  162 (393)
T ss_dssp             HHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred             HHHHHHHcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEEECCCCCcceecCHHHHHH
Confidence            9854448899999999999887544321                     1                         99999


Q ss_pred             HHHHc----CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHH
Q 019543          117 MAHAH----GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFD  192 (339)
Q Consensus       117 la~~~----g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~  192 (339)
                      +|++|    |+++++|++|+.+...++...++|++++|+||+++++|.++||+++++++++++.++..+..+|..+++..
T Consensus       163 la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~  242 (393)
T 1n8p_A          163 LIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFD  242 (393)
T ss_dssp             HHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHH
Confidence            99999    99999999998776556667789999999999999888778899998656788888877666788888988


Q ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCC-ceEEecCCCCCCCchHhHhhhcCC-C-cceEEEeeC-CHHHHHHH
Q 019543          193 CWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VKKVNYAGLPEHPGHELHYSQAKG-A-GSVLSFLTG-SLALSKHV  268 (339)
Q Consensus       193 a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~-i~~v~~p~~~~~~~~~~~~~~~~~-~-~~ivs~~~~-~~~~~~~~  268 (339)
                      ++++..+++.+..++++..++++.+.++|++++. +..+.+|+++++|+++++.++.++ . +++++|.++ +...+.+|
T Consensus       243 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  322 (393)
T 1n8p_A          243 AWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKF  322 (393)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHH
Confidence            8888888999999999999999999999999988 888889999989999998887665 6 899999995 45678889


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++.|+.+++++|+|+..++..+|+.+.|..++.+.+..+|++++.||||+|.|+++++|+++.+||+++
T Consensus       323 l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          323 ASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888888899999999999999999999999999999863

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=2.7e-46  Score=360.61  Aligned_cols=328  Identities=33%  Similarity=0.509  Sum_probs=284.3

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      +++|+++|++...+ .++++.+|||+|+||.+++.+        ...+|.|+|..+|..++||+++++++|.+++++++|
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~s   81 (421)
T 2ctz_A            2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATAS   81 (421)
T ss_dssp             CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CcceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEecC
Confidence            46799999987654 489999999999999998753        234688999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH----H------------------------------------------
Q 019543           79 GMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL----S------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~----~------------------------------------------  111 (339)
                      |++|+..++ .++++||+|+++.+.|+++...+    .                                          
T Consensus        82 Gt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n~~G~~~  161 (421)
T 2ctz_A           82 GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIP  161 (421)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEEECCCCCCCccc
Confidence            999998544 57899999999999987654322    1                                          


Q ss_pred             --HHHHHHHHHcCCEEEEeCCc-CCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcC-hhH----HHHHH-----
Q 019543          112 --RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKG-ERL----AKELY-----  178 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~-a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~-~~l----~~~l~-----  178 (339)
                        ++|.++|++||+++|+|++| +.|...+++..++|++++|++|+++++++.+||+++.++ .++    .+.++     
T Consensus       162 ~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g  241 (421)
T 2ctz_A          162 DLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG  241 (421)
T ss_dssp             CHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred             CHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccch
Confidence              99999999999999999999 888766777778999999999999998877888888732 111    11111     


Q ss_pred             -----------------H----HHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCC
Q 019543          179 -----------------F----LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  237 (339)
Q Consensus       179 -----------------~----~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~  237 (339)
                                       .    ..+.+|..++|+.++++..+++.+..|++++.++++++.++|+++|+|+.+.||++++
T Consensus       242 ~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~  321 (421)
T 2ctz_A          242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH  321 (421)
T ss_dssp             GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred             hhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCC
Confidence                             1    1234678899999999999999999999999999999999999999999999999999


Q ss_pred             CCchHhHhhhc-CCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEE
Q 019543          238 HPGHELHYSQA-KGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  315 (339)
Q Consensus       238 ~~~~~~~~~~~-~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lR  315 (339)
                      +|+|+++++++ ++.+++++|.+.+ .+.+.+|+++++.+++++++|+.++++.+|+.++|..++++.++.+|+.+++||
T Consensus       322 ~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vR  401 (421)
T 2ctz_A          322 HPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVR  401 (421)
T ss_dssp             CTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEE
T ss_pred             CCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEE
Confidence            99999999887 6889999999966 366788999999999999999999999999999999999988999999999999


Q ss_pred             EEeccCCHHHHHHHHHHHHh
Q 019543          316 ISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       316 isvg~e~~~~li~~l~~al~  335 (339)
                      +|+|.|+++++|++|.+||+
T Consensus       402 lS~g~e~~~~li~~l~~al~  421 (421)
T 2ctz_A          402 LSVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             EECCSSCHHHHHHHHHHHTC
T ss_pred             EEeCCCCHHHHHHHHHHHhC
Confidence            99999999999999999984

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-44  Score=344.92  Aligned_cols=329  Identities=33%  Similarity=0.533  Sum_probs=284.3

Q ss_pred             CccceeeccCCCCCCCCCccccccccceeeCCCCC-------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHH
Q 019543            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT-------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGM   80 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~   80 (339)
                      +++|+++|++...+.++++.+|||++++|.+++.+       ...+|.|+|..++..+++|+++++++|.+++++++||+
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt   81 (412)
T 2cb1_A            2 EYTTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFATGEGYVYARQKDPTAKALEERLKALEGALEAVVLASGQ   81 (412)
T ss_dssp             CHHHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHHHCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred             CccceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhccccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHH
Confidence            46799999987555689999999999999998764       13568999999999999999999999999999999999


Q ss_pred             HHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------------------------------------HH
Q 019543           81 AALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------RK  113 (339)
Q Consensus        81 ~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------~~  113 (339)
                      +|+..++ .++++||+|+++++.|+++...+.                                              ++
T Consensus        82 ~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~  161 (412)
T 2cb1_A           82 AATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFVETVANPALLVPDLEA  161 (412)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEEeCCCCCCcccccHHH
Confidence            9998655 478999999999999987554321                                              99


Q ss_pred             HHHHHHHcCCEEEEeCCcCCC-CCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh---------------------
Q 019543          114 IAEMAHAHGALLLVDNSIMSP-VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE---------------------  171 (339)
Q Consensus       114 I~~la~~~g~~livD~a~a~g-~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~---------------------  171 (339)
                      |.++|++||+++++|++|+.+ ....+...+.|++++|+||+++++++.+||+++.+++                     
T Consensus       162 i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  241 (412)
T 2cb1_A          162 LATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWE  241 (412)
T ss_dssp             HHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HH
T ss_pred             HHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhh
Confidence            999999999999999999887 5556666789999999999999988778888887643                     


Q ss_pred             -----hHHHHHHHHH-HhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHh
Q 019543          172 -----RLAKELYFLQ-NAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHY  245 (339)
Q Consensus       172 -----~l~~~l~~~~-~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~  245 (339)
                           ++.+.++... +..|..++|..++++..+++.+..+.++..++++++.++|+++++|..+++|+.+++|+|++++
T Consensus       242 ~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~  321 (412)
T 2cb1_A          242 ALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNAR  321 (412)
T ss_dssp             HHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHH
Confidence                 3344444433 3356677899888888899999989998899999999999999999989999999999999999


Q ss_pred             hhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHH
Q 019543          246 SQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVND  325 (339)
Q Consensus       246 ~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~  325 (339)
                      +++++.+++++|.+++.+...++++++..+. ..|+|+.++++.+|+.++|..++.+.+..+|+.++.||+|+|.+++++
T Consensus       322 ~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~  400 (412)
T 2cb1_A          322 KYLASGGPILTLDLGDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLD  400 (412)
T ss_dssp             HHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred             HhCCCCceEEEEEeCCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence            9998889999999965667788888888887 889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 019543          326 LISDLDKALRTG  337 (339)
Q Consensus       326 li~~l~~al~~~  337 (339)
                      +|++|.+||+++
T Consensus       401 ~i~~l~~al~~~  412 (412)
T 2cb1_A          401 LLALFEEALEAV  412 (412)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHhhC
Confidence            999999999863

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=3.3e-44  Score=343.26  Aligned_cols=332  Identities=37%  Similarity=0.614  Sum_probs=266.7

Q ss_pred             CCCCccceeeccCCCCC-CCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEE
Q 019543            5 EEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~   75 (339)
                      +.++++|+++|++...+ .++++.+|+|+++|+.+++..+        ..+|.|+|..+|..+++|+++++++|.+++++
T Consensus         6 ~~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~   85 (398)
T 1gc0_A            6 KLPGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLA   85 (398)
T ss_dssp             -CCCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEE
Confidence            45678999999987644 4899999999999999987542        24588999999999999999999999999999


Q ss_pred             cCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHH----H---------------------------------------
Q 019543           76 FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLL----S---------------------------------------  111 (339)
Q Consensus        76 ~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~----~---------------------------------------  111 (339)
                      ++||++|+.++ ..++++||+|+++++.|+++...+    .                                       
T Consensus        86 ~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  165 (398)
T 1gc0_A           86 LASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMH  165 (398)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             ECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCcc
Confidence            99999999854 457899999999999998866543    1                                       


Q ss_pred             ----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-cCC
Q 019543          112 ----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGS  186 (339)
Q Consensus       112 ----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-~~~  186 (339)
                          ++|.++|++||+++++|++|+.+....++..++|+++.|+||+++++++.+||+++++++.+.+.++..... ++.
T Consensus       166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~  245 (398)
T 1gc0_A          166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA  245 (398)
T ss_dssp             CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence                999999999999999999998876666667789999999999999988777899988753333356655555 678


Q ss_pred             CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHH
Q 019543          187 GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALS  265 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~  265 (339)
                      .+++..++++..+++.+..++++..++++++.++|++++.++.+.+|.++++|+++++.++.++.+++++|.+.+ .+.+
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (398)
T 1gc0_A          246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG  325 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHH
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHH
Confidence            889998888888899999999999999999999999999999999999999999999887777789999999864 3567


Q ss_pred             HHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          266 KHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       266 ~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .+++++++.++..+++|+.++++.+|..++|..++.+.+..+|++++.||||+|.++++++|++|.++|++
T Consensus       326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~  396 (398)
T 1gc0_A          326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  396 (398)
T ss_dssp             HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence            88999999989999999999999999999999999988999999999999999999999999999999976

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=8.1e-42  Score=332.95  Aligned_cols=334  Identities=86%  Similarity=1.294  Sum_probs=288.7

Q ss_pred             CCCccceeeccCCCCCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH
Q 019543            6 EPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~   85 (339)
                      .+.++|.++|.+...++.+++++||++++++.++...+...|.|+|.++|.++++++++++++|.+++++++||++|+.+
T Consensus        84 ~~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~  163 (464)
T 1ibj_A           84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA  163 (464)
T ss_dssp             -CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH
T ss_pred             cCCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHH
Confidence            35667878888653356889999999999998766555566889998999999999999999999999999999999987


Q ss_pred             HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           86 VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        86 il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                      ++.+++|||+|+++++.|+++...+.                                               ++|+++|
T Consensus       164 ~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la  243 (464)
T 1ibj_A          164 VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMA  243 (464)
T ss_dssp             HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHH
Confidence            66788999999999999988764321                                               9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      ++||+++|+|++|+.|....++..++|++++|+||+++|+++.++|+++++++++.+.++......|..++++.++++..
T Consensus       244 ~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~  323 (464)
T 1ibj_A          244 HAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLR  323 (464)
T ss_dssp             HTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999999886656666789999999999999887778899999866788888777666788889998888888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                      +++.+..|+++..+++..+.++++.++.++.+.++.+..+|++++...+.++.+++++|.+++.+...+|++.|+.++++
T Consensus       324 al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~  403 (464)
T 1ibj_A          324 GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIA  403 (464)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEEC
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEe
Confidence            89999889999999999999999999988899999999888888887766678899999997655566799999999999


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCCC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  339 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~~  339 (339)
                      ++.|..++++++|+.+.|..++.+.+...|+.++.||||+|.|+.++++++|.++|+++|.
T Consensus       404 v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~~~  464 (464)
T 1ibj_A          404 VSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  464 (464)
T ss_dssp             SCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             ecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhcCC
Confidence            9999999999999888888777666667788889999999999999999999999999884

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=2e-41  Score=324.84  Aligned_cols=329  Identities=37%  Similarity=0.659  Sum_probs=284.4

Q ss_pred             CCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            7 PGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      .+++|+++|++.....++++.+|+|+++++.++...        ....|.|+|.++|..++||+++++++|.+++++++|
T Consensus         6 ~~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~~~   85 (404)
T 1e5e_A            6 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSS   85 (404)
T ss_dssp             CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             CCccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEeCC
Confidence            457899999986523479999999999999998653        134688999889999999999999999999999999


Q ss_pred             HHHHHHHHH-HhcCCCCEEEEcCCCccchHH----HHH------------------------------------------
Q 019543           79 GMAALAAVT-HLLGTGEEIVAGDDLYGGTDR----LLS------------------------------------------  111 (339)
Q Consensus        79 G~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~----~~~------------------------------------------  111 (339)
                      |++|+..++ ++++|||+|+++++.|+++..    .+.                                          
T Consensus        86 g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l~~p~NptG~v~~  165 (404)
T 1e5e_A           86 GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIID  165 (404)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             hHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEEECCCCCCCcccC
Confidence            999998644 588999999999999988766    332                                          


Q ss_pred             -HHHHHHHHH-cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHH-HHHHHHHhc-CCC
Q 019543          112 -RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQNAE-GSG  187 (339)
Q Consensus       112 -~~I~~la~~-~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~-~l~~~~~~~-~~~  187 (339)
                       ++|+++|++ ||+++|+|++|+.+....++..+.|++++|+||+++++++.++|++++++ ++++ .++.....+ +..
T Consensus       166 l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~-~~~~~~l~~~~~~~~g~~  244 (404)
T 1e5e_A          166 MERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA-DLLQQIRMVGIKDITGSV  244 (404)
T ss_dssp             HHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH-HHHHHHHHTCCCCCCCCC
T ss_pred             HHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECH-HHHHHHHHHHHHhCCCCC
Confidence             999999999 99999999999988765666678999999999999998877678998875 4555 565544334 667


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSK  266 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~  266 (339)
                      ++++.++++..+++.++.+++++.++++.+.+++++++.+..+.+|.+++.|++++...+.++.+++++|.+.+. +.+.
T Consensus       245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~  324 (404)
T 1e5e_A          245 ISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAK  324 (404)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHH
T ss_pred             CCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHH
Confidence            889888888888999888999999999999999999998988999999999999988887778899999998664 5577


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +++++++.+..++++|+.+|++.+|+.++|..++.+.+...|++++.||||+|.|+.++++++|.+++++
T Consensus       325 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~  394 (404)
T 1e5e_A          325 KLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA  394 (404)
T ss_dssp             HHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999999999889999999999999999999999875

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=6.1e-40  Score=313.45  Aligned_cols=336  Identities=40%  Similarity=0.685  Sum_probs=287.4

Q ss_pred             CCCCCCCCccceeeccCCCCC-CCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCC
Q 019543            1 MSVEEEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKAD   71 (339)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~   71 (339)
                      |+--..++++|+++|++...+ ...++..|++.++++..+...        ....|.|+|..++..+++++++++++|.+
T Consensus         1 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~   80 (398)
T 2rfv_A            1 MSDCRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE   80 (398)
T ss_dssp             -CCGGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS
T ss_pred             CCCcccCCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC
Confidence            444455678899999987644 478999999999999987643        13568899999999999999999999999


Q ss_pred             eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHH----H-----------------------------------
Q 019543           72 RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLL----S-----------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~----~-----------------------------------  111 (339)
                      ++++++||++|+..+ ..+++|||+|+++++.|+++...+    .                                   
T Consensus        81 ~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~~~~~n  160 (398)
T 2rfv_A           81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPAN  160 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSBT
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEEECCCC
Confidence            999999999999854 457899999999999998765543    2                                   


Q ss_pred             --------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHH-HHHHHHH
Q 019543          112 --------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-ELYFLQN  182 (339)
Q Consensus       112 --------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~-~l~~~~~  182 (339)
                              ++|.++|++||+++|+|++|+.+....+...+.|+++.|+||+++++++.+||++++++ ++++ .++....
T Consensus       161 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~-~~~~~~~~~~~~  239 (398)
T 2rfv_A          161 PTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQ-EFIDQARFVGLK  239 (398)
T ss_dssp             TTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH-HHHHHHHHTHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECH-HHHHHHHHHHHH
Confidence                    99999999999999999999988776666678999999999999988877778998875 5555 5665555


Q ss_pred             hc-CCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC
Q 019543          183 AE-GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  261 (339)
Q Consensus       183 ~~-~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~  261 (339)
                      .+ +..+++..++++..+++.+..++++..++++.+.++|++++.++.+.+|.++..|++++...+.++.+++++|.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~  319 (398)
T 2rfv_A          240 DITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG  319 (398)
T ss_dssp             HTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT
T ss_pred             hCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence            56 77888988888888888888899999999999999999999999999999998888888876666789999999865


Q ss_pred             -HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          262 -LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       262 -~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                       .+.+.++.+.++..++++++|..++++.+|...+|..++.+.+...|+.++.||||+|.++++++|++|.++|+++
T Consensus       320 ~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          320 GLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence             3567789999998999999999999999999999998888888889988999999999999999999999999863

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=1.2e-39  Score=310.04  Aligned_cols=327  Identities=39%  Similarity=0.621  Sum_probs=275.4

Q ss_pred             CccceeeccCCCC-CCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH
Q 019543            8 GVSTLLMNFSNEF-DPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAV   86 (339)
Q Consensus         8 ~~~~~~~~~~~~~-~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i   86 (339)
                      +++|+++|.+... +.++++.+|||++++|.+++.....+|.|+|..++..++|+++++++++.++.++++||++|+..+
T Consensus         4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~   83 (386)
T 1cs1_A            4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   83 (386)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             CcceeEEecCCCccccCCCCCCCccccceeeccccCCCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHH
Confidence            5679999998654 458999999999999999776655679999999999999999999999998999999999999865


Q ss_pred             H-HhcCCCCEEEEcCCCccchHHHH----H-------------------------------------------HHHHHHH
Q 019543           87 T-HLLGTGEEIVAGDDLYGGTDRLL----S-------------------------------------------RKIAEMA  118 (339)
Q Consensus        87 l-~ll~~GD~Vi~~~~~y~~~~~~~----~-------------------------------------------~~I~~la  118 (339)
                      + .++++||+|+++++.|+++...+    .                                           ++|.++|
T Consensus        84 ~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~  163 (386)
T 1cs1_A           84 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  163 (386)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHH
Confidence            4 47899999999999998754432    1                                           9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      ++||+++|+|++|+.+....+...+.|++++|++|++++++.++||+++++++++.+.++.....++...++..++.+..
T Consensus       164 ~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  243 (386)
T 1cs1_A          164 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  243 (386)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             HHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence            99999999999998876655566788999999999999887666789988865677888776666667778888877777


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCccee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSI  277 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i  277 (339)
                      .++.+..+.++..++++.+.++|++++.+..+.+|.+...|++++...+.++.+++++|.+.+ .+...++++   ..|+
T Consensus       244 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~gi  320 (386)
T 1cs1_A          244 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLG---GLSL  320 (386)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHH---TCSS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHH---hCCc
Confidence            788888888899999999999999999998888999988888888877666789999999854 333344443   3455


Q ss_pred             ecc---cCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          278 TVS---FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       278 ~v~---~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .++   +|+..|++++|..+.|...+.+.+..+|+.++.||||++.+++++++++|.++|+++
T Consensus       321 ~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          321 FTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             SEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            555   899999999999989988888788888988899999999999999999999999763

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=1.2e-32  Score=255.98  Aligned_cols=280  Identities=43%  Similarity=0.701  Sum_probs=232.2

Q ss_pred             HHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH----H---------------------
Q 019543           58 DALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL----S---------------------  111 (339)
Q Consensus        58 ~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~----~---------------------  111 (339)
                      ++||+++++++|.+++++++||++|+..++ .++++||+|+++++.|++....+    .                     
T Consensus         1 ~~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i   80 (331)
T 1pff_A            1 SALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHL   80 (331)
T ss_dssp             CHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTC
T ss_pred             ChHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhh
Confidence            368999999999999999999999998654 47899999999999998765433    1                     


Q ss_pred             ----------------------HHHHHHHHH-cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEE
Q 019543          112 ----------------------RKIAEMAHA-HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAV  168 (339)
Q Consensus       112 ----------------------~~I~~la~~-~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~  168 (339)
                                            ++|.++|++ ||+++++|++|+.|....+...+.|++++|+||++++++..++|++++
T Consensus        81 ~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~  160 (331)
T 1pff_A           81 KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence                                  999999999 999999999998776544556688999999999999887655789988


Q ss_pred             cChhHHHHHHHHHHh-cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhh
Q 019543          169 KGERLAKELYFLQNA-EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  247 (339)
Q Consensus       169 ~~~~l~~~l~~~~~~-~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~  247 (339)
                      +++++.+.++..... .+...++..++.+..+++.++.+.++..++.+.+.++++.++.+..+.++.+...|++.+....
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~  240 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence            753677776655444 4567788877777778888888888889999999999998888888889988888888777665


Q ss_pred             cCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHH
Q 019543          248 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  327 (339)
Q Consensus       248 ~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li  327 (339)
                      .++.+++++|.+.+.+...++++....+...+++|+.+|++.+|....|..++.+.+..+|++++.||||+|.+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i  320 (331)
T 1pff_A          241 MKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDII  320 (331)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHH
T ss_pred             CCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHH
Confidence            56678999999876555666665544444477899999999999988999888888888999889999999999999999


Q ss_pred             HHHHHHHhcC
Q 019543          328 SDLDKALRTG  337 (339)
Q Consensus       328 ~~l~~al~~~  337 (339)
                      +++.++|+++
T Consensus       321 ~~l~~~l~~~  330 (331)
T 1pff_A          321 DDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999999863

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.95  E-value=1.8e-27  Score=229.01  Aligned_cols=275  Identities=17%  Similarity=0.177  Sum_probs=203.8

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHH-HHHhcCCCCEEEEcC-CCccchHHHH--------H
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAA-VTHLLGTGEEIVAGD-DLYGGTDRLL--------S  111 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~-il~ll~~GD~Vi~~~-~~y~~~~~~~--------~  111 (339)
                      .+|.|+|.   .+++||+++|+++|++.+++   |+||++|+.+ +.++++|||+|++++ +.|++...++        .
T Consensus        66 ~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  142 (427)
T 3i16_A           66 SGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG  142 (427)
T ss_dssp             CTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred             CCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence            45777765   49999999999999999999   8999999985 456899999999998 8887654322        0


Q ss_pred             ---------------------------------------------------------HHHHHHHHH--cCCEEEEeCCcC
Q 019543          112 ---------------------------------------------------------RKIAEMAHA--HGALLLVDNSIM  132 (339)
Q Consensus       112 ---------------------------------------------------------~~I~~la~~--~g~~livD~a~a  132 (339)
                                                                               ++|+++|++  ||+++++|++|+
T Consensus       143 ~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~  222 (427)
T 3i16_A          143 SLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYG  222 (427)
T ss_dssp             CTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTT
T ss_pred             HHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence                                                                     899999999  999999999999


Q ss_pred             CCC-CcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCCh-HH-HHHHHhchhhHHHHH
Q 019543          133 SPV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAP-FD-CWICLRGVKTMALRV  207 (339)
Q Consensus       133 ~g~-~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~-~~-a~~~~~~l~~~~~r~  207 (339)
                      .++ ..++...++|++++|+||+++|+++..||+++++ ++++++++....  .++..++| +. ++++++++++++.|+
T Consensus       223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~  301 (427)
T 3i16_A          223 EFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGT-KDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHIS  301 (427)
T ss_dssp             TTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccCCccccCCeEEEecCcccCCCCCCceEEEEEEC-HHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHH
Confidence            887 5677778899999999999999887889999987 478888876432  23333444 44 788899999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      +++.+|+.+++++|++++.  .| +|+ +++|+|++          |++|.+++.+.+.+|++.|+.+....++-...+.
T Consensus       302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~  367 (427)
T 3i16_A          302 MEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFNDKDKLIEFCKGIQTGSPIDSFVSCEPW  367 (427)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECSSHHHHHHHHHHHHHTCSSSTTSCCCCB
T ss_pred             HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEECCHHHHHHHHHHHhhcCcccccccCcCC
Confidence            9999999999999999975  56 787 66665533          9999999999999999999887665443211110


Q ss_pred             ee----ccccccCCCC----CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          288 IS----MPCFMSHASI----PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       288 ~~----~p~~~~h~~~----~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ..    .+..|+-..+    +-|..+...+.+..+...-|-.+.+...-.+..|+.++
T Consensus       368 ~~~gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3i16_A          368 DMPGYTDQVIMAAGAFIQGSSIELSADAPIREPYIAYLQGGLTFDHAKIGILIALSRI  425 (427)
T ss_dssp             CC---CCCEEEEECCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCceeeccCcCCCCccccccCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHH
Confidence            00    0001110000    00000111234456777777777777766777777664

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.95  E-value=4.1e-27  Score=226.40  Aligned_cols=271  Identities=17%  Similarity=0.139  Sum_probs=203.0

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHH-HHHhcCCCCEEEEcC-CCccchHHHH---------
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAA-VTHLLGTGEEIVAGD-DLYGGTDRLL---------  110 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~-il~ll~~GD~Vi~~~-~~y~~~~~~~---------  110 (339)
                      .+|.|+|.   .+++||+++|+++|++++++   |+||++||.+ +.++++|||+|++++ +.|++...++         
T Consensus        67 ~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  143 (427)
T 3hvy_A           67 SGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVG  143 (427)
T ss_dssp             CTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred             cCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhh
Confidence            45778765   48999999999999999999   8999999985 456899999999998 8886554221         


Q ss_pred             -------------------------------H------------------------HHHHHHHHH--cCCEEEEeCCcCC
Q 019543          111 -------------------------------S------------------------RKIAEMAHA--HGALLLVDNSIMS  133 (339)
Q Consensus       111 -------------------------------~------------------------~~I~~la~~--~g~~livD~a~a~  133 (339)
                                                     .                        ++|+++|++  ||+++++|++|+.
T Consensus       144 ~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~  223 (427)
T 3hvy_A          144 SLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGE  223 (427)
T ss_dssp             CTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCT
T ss_pred             HHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccc
Confidence                                           0                        899999999  8999999999998


Q ss_pred             CC-CcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCC--CCChHHHHHHHhchhhHHHHHH
Q 019543          134 PV-LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGS--GLAPFDCWICLRGVKTMALRVE  208 (339)
Q Consensus       134 g~-~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~--~~~~~~a~~~~~~l~~~~~r~~  208 (339)
                      ++ ..++...++|++++|+||+++|+++..||+++++ ++++++++.....  .+.  ..++..++++++++++++.|++
T Consensus       224 ~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~-~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~  302 (427)
T 3hvy_A          224 FVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGK-EEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTI  302 (427)
T ss_dssp             TTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCeEEEECCcccccccccceEEEEEEC-HHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHH
Confidence            87 5677788899999999999999887889999987 5788888775422  222  2223347788899999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc-------
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF-------  281 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~-------  281 (339)
                      ++.+|+.+++++|++++.  .| +|+ +++|.|          .-+++|.+++.+++.+|++.|+.+....++       
T Consensus       303 ~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~----------~li~~~~l~~~~~~~~f~~~l~~~~~~~s~~~p~~~~  368 (427)
T 3hvy_A          303 EAVKGAVFCARIMELAGF--DV-LPK-YNDKRT----------DIIQAIKFNDEKKLIDFIKGIQTASPVDSFVQCEAWD  368 (427)
T ss_dssp             HHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCS----------SSEEEEECSSHHHHHHHHHHHHHTCSSSTTCCC----
T ss_pred             HHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCc----------eEEEEEeCCCHHHHHHHHHHhccccccccccCCCCCC
Confidence            999999999999999875  45 786 666654          239999999999999999999886554332       


Q ss_pred             -CCcccceecccc----ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          282 -GSVKSLISMPCF----MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       282 -G~~~s~~~~p~~----~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                       .|+.+.+..++-    .+...++    +...+.+..+...-|-.+.+...-.+..|+.++
T Consensus       369 ~~Gy~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
T 3hvy_A          369 MPGYEDKVIMAAGTFVQGASIELS----ADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL  425 (427)
T ss_dssp             ------CEEEECCCSSTTCSSSSE----EEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCCCcCceeeeccccCCCcccccc----CCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence             222222222210    0111111    112245566788888888877777888888764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.95  E-value=2.2e-26  Score=220.41  Aligned_cols=270  Identities=18%  Similarity=0.191  Sum_probs=198.8

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHH-HHHhcCCCCEEEEcC-CCccchHHHH---------
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAA-VTHLLGTGEEIVAGD-DLYGGTDRLL---------  110 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~-il~ll~~GD~Vi~~~-~~y~~~~~~~---------  110 (339)
                      .+|.|+|.   .+++||+++|+++|++.+++   |+||++|+.+ +.++++|||+|++++ +.|++...++         
T Consensus        52 ~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~  128 (409)
T 3jzl_A           52 TGYGYDDE---GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGS  128 (409)
T ss_dssp             CTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSC
T ss_pred             cCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhH
Confidence            45667765   58999999999999999999   8999999985 456899999999998 8888766432         


Q ss_pred             -H----------------------------------------------------HHHHHHHHH--cCCEEEEeCCcCCCC
Q 019543          111 -S----------------------------------------------------RKIAEMAHA--HGALLLVDNSIMSPV  135 (339)
Q Consensus       111 -~----------------------------------------------------~~I~~la~~--~g~~livD~a~a~g~  135 (339)
                       +                                                    ++|+++|++  ||+++++|++|+.++
T Consensus       129 l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~  208 (409)
T 3jzl_A          129 LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFV  208 (409)
T ss_dssp             TGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred             HHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence             1                                                    899999999  999999999999887


Q ss_pred             -CcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cC--CCCChHHHHHHHhchhhHHHHHHHH
Q 019543          136 -LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EG--SGLAPFDCWICLRGVKTMALRVEKQ  210 (339)
Q Consensus       136 -~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~--~~~~~~~a~~~~~~l~~~~~r~~~~  210 (339)
                       ..++...++|++++|+||+++|+++..||+++++ ++++++++.....  .+  ....+..++++++++++++.|++++
T Consensus       209 ~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~  287 (409)
T 3jzl_A          209 EYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGK-EALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQA  287 (409)
T ss_dssp             SSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccCCeEEEECccccCCccCCceEEEEEeC-HHHHHHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHH
Confidence             4567778899999999999999887889999987 5788888775432  11  1222222456788899999999999


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccC--------
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG--------  282 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G--------  282 (339)
                      .+|+++++++|++++.  .| +|. +++|+|          .-|++|.+++.+++.+|++.|+.+....++-        
T Consensus       288 ~~~a~~la~~L~~~g~--~v-~p~-~~~~~~----------~~i~~i~l~~~~~~~~~~~~L~~~~~~~s~~~p~~~~~~  353 (409)
T 3jzl_A          288 IKGARFTAAMLAEFGV--EA-DPV-WDAPRT----------DLIQSVSFHNKEKMVAFAQAIQAASPVNAHVLPIGAYMP  353 (409)
T ss_dssp             HHHHHHHHHHHHHTTC--EE-ESC-TTSCCS----------SSCCEEECSCHHHHHHHHHHHHHTSSSSTTSCCCCBCCT
T ss_pred             HHHHHHHHHHHHhCCC--cc-cCC-CCCCCc----------cEEEEEEeCCHHHHHHHHHHHHhcCcccccCCCCCCCCC
Confidence            9999999999999875  45 776 666544          2399999999999999999998876543331        


Q ss_pred             CcccceeccccccCCCC----CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          283 SVKSLISMPCFMSHASI----PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       283 ~~~s~~~~p~~~~h~~~----~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ++...+.    |+-..+    +-|..+...+.+..+.+.-|-.+.+...-.+..|+.+
T Consensus       354 gy~~~~~----~~~~~f~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (409)
T 3jzl_A          354 GYEDDVI----MAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQK  407 (409)
T ss_dssp             TCSSCEE----EECCCSSTTCSSSCEEEEESSTTTEEEEECCSSHHHHHHHHHHHHHH
T ss_pred             CCCCcee----EeccccCCCcceeecCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHh
Confidence            1111111    111110    0011111123445677777877777766677777764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.92  E-value=1.4e-23  Score=199.15  Aligned_cols=265  Identities=13%  Similarity=0.104  Sum_probs=191.6

Q ss_pred             CchHHHHHHHH-HhHhC-CCeEEEcCcHHHHHHH-HHHh-cCCCCEEEEcCCCccchHHHHH------------------
Q 019543           54 NPTRDALESLL-AKLDK-ADRALCFTSGMAALAA-VTHL-LGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        54 ~~~~~~le~~l-a~~~g-~~~~l~~~sG~~A~~~-il~l-l~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +|.+++||+++ |+++| .+++++++||++|+.+ +..+ ++|||+|+++++.|.++...+.                  
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~  114 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYM  114 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSB
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCc
Confidence            68899999999 99999 8899999999999985 4456 8999999999998876543221                  


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccC---CCeEEEecc--cccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLEL---GADIVMHSA--TKFI  155 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~---~~Di~~~S~--sK~l  155 (339)
                                                     ++|.++|+ ||++||+|++|+.|...+....   ..|+.++||  +|++
T Consensus       115 d~~~l~~~i~~~~~~tk~v~~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~S~~~~K~l  193 (377)
T 3ju7_A          115 DKTVLWDKIEELKEEVAIVVPYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIYSFHATKPF  193 (377)
T ss_dssp             CHHHHHHHHHHHGGGEEEECCBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEEECBTTSSS
T ss_pred             CHHHHHHHHhcCCCCceEEEEECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEEECCCCCcC
Confidence                                           89999999 9999999999998864332222   368888876  6999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHHHHh------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhC
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~~~~------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      ++ +  .||+++++++++.++++.++..            ++..++++.+++++.+++.++.+.++++++++++.+.|++
T Consensus       194 ~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~~~~~~L~~  270 (377)
T 3ju7_A          194 GI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISEWYKQLLQS  270 (377)
T ss_dssp             CC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            86 3  5899999888888888776541            2466889999999999999999999999999999999998


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC--CCCCH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH--ASIPV  301 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h--~~~~~  301 (339)
                      ++++.....|....+           .....+++.+.+.....++.+.|+..||.++.+....+...|....|  ..++.
T Consensus       271 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~  339 (377)
T 3ju7_A          271 NGLMKKGWQLQKTEA-----------VIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTR  339 (377)
T ss_dssp             TTTTTTTCBCCCCSC-----------BCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHH
T ss_pred             CCCccccccCCCCCc-----------ceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHH
Confidence            876421111210000           11223456665432356788888888999887653333333332222  12221


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ..+    +..+.||++++..-+++.++.+.++|++.
T Consensus       340 ~~~----~~~~~l~lp~~~~~t~~di~~v~~~l~~~  371 (377)
T 3ju7_A          340 TNK----IAKRIVSLPLWEGMTKEIVEQIVICLGQK  371 (377)
T ss_dssp             HHH----HHHHEEEECCCTTCCHHHHHHHHHHHTC-
T ss_pred             HHH----HHhCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence            111    23468999999998888899999988753

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.91  E-value=3.5e-23  Score=195.15  Aligned_cols=264  Identities=14%  Similarity=0.135  Sum_probs=188.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..+++|+++++++|.+++++++||++|+.+++ .+ +++||+|+++.+.|.++...+.                   
T Consensus        34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  113 (373)
T 3frk_A           34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNID  113 (373)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEEC
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcC
Confidence            46789999999999999999999999999998644 56 8999999999999988765443                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCC--CeEEEeccc--cccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSAT--KFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~--~Di~~~S~s--K~l~g~~~  160 (339)
                                                 ++|.++|++||+++|+|++|+.|...+....+  .|++++||+  |++++++ 
T Consensus       114 ~~~l~~~l~~~~~~v~~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~l~~~g-  192 (373)
T 3frk_A          114 PSLIESAITEKTKAIIAVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLG-  192 (373)
T ss_dssp             GGGTGGGCCTTEEEEEEECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSS-
T ss_pred             HHHHHHhcCCCCeEEEEECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcCCCccCccc-
Confidence                                       99999999999999999999987653333333  799999977  9998644 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                       .||+++++++.+.+.++..+..            ++..++++.+++....++.++...++++++++++.+.|++++ +.
T Consensus       193 -~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~  270 (373)
T 3frk_A          193 -DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNPN-VI  270 (373)
T ss_dssp             -SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EE
T ss_pred             -eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eE
Confidence             3889998876777777765531            123467787877777777888888888899999999998876 43


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecccccc--C--CCCCHHHH
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--H--ASIPVEVR  304 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~--h--~~~~~~~~  304 (339)
                         .|..+...         .....++++...+   ..++.+.|+..||.++.+...+....|....  +  ..++....
T Consensus       271 ---~~~~~~~~---------~~~~~~~~~~~~~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (373)
T 3frk_A          271 ---IPVEADYA---------KHVWYTFVIRSEK---RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEK  335 (373)
T ss_dssp             ---CCCCCTTE---------ECCCSSEEEEESS---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHH
T ss_pred             ---eccCCCCC---------ceeeEEEEEEeCC---HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHH
Confidence               23211100         1122345555443   3466777777788888654222222222110  0  01111000


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCC
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALRTGP  338 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~  338 (339)
                          +..+.||+|++...+++.++.+.++|++.+
T Consensus       336 ----~~~~~lrl~~~~~~t~~di~~~~~~l~~~~  365 (373)
T 3frk_A          336 ----IANEILSIPIWYGMKNEEIEYVIDKINAWK  365 (373)
T ss_dssp             ----HHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred             ----HHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                123689999999999999999999998764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.91  E-value=1.3e-22  Score=191.11  Aligned_cols=263  Identities=16%  Similarity=0.131  Sum_probs=190.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..+++|+++++++|.+++++++||++|+.+++ .+ ++|||+|+++.+.|.++...+.                   
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d  112 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLD  112 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence            56789999999999999999999999999998644 56 7999999999999988765443                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCC--eEEEecc--ccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~--Di~~~S~--sK~l~g~~~  160 (339)
                                                 ++|.++|++||+++|+|++|+.|...+....+.  |++++||  +|++++.|.
T Consensus       113 ~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~K~l~~~g~  192 (367)
T 3nyt_A          113 PQLLEAAITPRTKAIIPVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPSAPLGCYGD  192 (367)
T ss_dssp             GGGTGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTTSSSCCSSC
T ss_pred             HHHHHHhcCcCCcEEEeeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCCCcCCCcCc
Confidence                                       999999999999999999998876533322233  9999997  899986543


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                        ||+++++++++.+.++..+..            ++..+++..++++...++.++...++++++++++.+.|++.+ +.
T Consensus       193 --gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~-~~  269 (367)
T 3nyt_A          193 --GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLSLKQVG-IG  269 (367)
T ss_dssp             --CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred             --eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ee
Confidence              889998877787777765431            246688888888888888888888888999999999998874 22


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc-cCCCCCHHHHHhC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM-SHASIPVEVRQAR  307 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~-~h~~~~~~~~~~~  307 (339)
                         .|..+...         .....++++.+.+   ..++.+.|+..||.++.+....+...|+.. ....++...    
T Consensus       270 ---~~~~~~~~---------~~~~~~~~~~~~~---~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~----  330 (367)
T 3nyt_A          270 ---TPFIEVNN---------ISVYAQYTVRMDN---RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGD----  330 (367)
T ss_dssp             ---CCCCCTTE---------ECCCSSEEEECSS---HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHH----
T ss_pred             ---ccCCCCCC---------ceeeEEEEEEeCC---HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHH----
Confidence               22111100         1123456666653   346677777788888866432333333321 111222111    


Q ss_pred             CCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          308 GLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       308 g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      .+..+.||++++...+++.++.+.+++++.
T Consensus       331 ~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          331 KAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            123468999999999999999999998864

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.90  E-value=2.1e-22  Score=193.77  Aligned_cols=241  Identities=16%  Similarity=0.175  Sum_probs=175.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+..++|++++++++|.+++++++||++|+..+ ..++++||+|+++.+.|......+.                    
T Consensus       107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~~d~~~le~~  186 (427)
T 2w8t_A          107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKR  186 (427)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCCCCHHHHHHH
Confidence            3577899999999999999999999999998754 4578999999999988765542221                    


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---------cccCCCeEEEecccccc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---------PLELGADIVMHSATKFI  155 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~---------~~~~~~Di~~~S~sK~l  155 (339)
                                                 ++|.++|++||+++|+|++|+.+....         .+..++|++++|+||++
T Consensus       187 l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~  266 (427)
T 2w8t_A          187 LGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV  266 (427)
T ss_dssp             HHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT
T ss_pred             HHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh
Confidence                                       899999999999999999998876531         11225799999999999


Q ss_pred             ccCCCceEEEEEEcChhHHHHHHHH-H-HhcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          156 AGHSDVMAGVLAVKGERLAKELYFL-Q-NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       156 ~g~~~~~gG~v~~~~~~l~~~l~~~-~-~~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      +.    .||++++++ ++++.++.. + ..+++.+++...+.+...++.+   +.+.++..++.+++.+.|+++ ++.. 
T Consensus       267 g~----~gG~v~~~~-~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-  339 (427)
T 2w8t_A          267 GT----VGGFVVSNH-PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GFRL-  339 (427)
T ss_dssp             CS----CCEEEEECC-TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEE-
T ss_pred             cc----CCCEEEeCH-HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcc-
Confidence            83    358998875 677766554 2 2356677787666555555544   667788888999999999876 4331 


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                      ..+.               +.+++++|.+++.....++.+.|...|+.++.|..      |..      +        -.
T Consensus       340 ~~~~---------------~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~------~~~------~--------~~  384 (427)
T 2w8t_A          340 GTET---------------CDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARP------PAT------P--------AG  384 (427)
T ss_dssp             SCSS---------------CCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECT------TTS------C--------TT
T ss_pred             cCCC---------------CCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCC------CCC------C--------CC
Confidence            1121               14679999998766677888888777887765432      211      1        12


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          311 EDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .+.+|||++..++++.++.+.++|+
T Consensus       385 ~~~lRi~~~~~~t~e~i~~~~~~l~  409 (427)
T 2w8t_A          385 TFLLRCSICAEHTPAQIQTVLGMFQ  409 (427)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4689999998766666666666554

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.89  E-value=6.5e-22  Score=186.16  Aligned_cols=263  Identities=16%  Similarity=0.150  Sum_probs=181.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..++||+.++++++.+++++++||++|+.+++ .+ +++||+|+++.+.|++....+.                   
T Consensus        36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~  115 (374)
T 3uwc_A           36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDP  115 (374)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCG
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCH
Confidence            46789999999999999999999999999998654 57 8999999999999988765443                   


Q ss_pred             --------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cccCCCeEEEeccc--cccccCCCc
Q 019543          112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSAT--KFIAGHSDV  161 (339)
Q Consensus       112 --------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~~~~Di~~~S~s--K~l~g~~~~  161 (339)
                                                ++|.++|++||+++|+|++|+.|....  ......|++++|+|  |++++++. 
T Consensus       116 ~~l~~~~~~~~~~v~~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-  194 (374)
T 3uwc_A          116 EKIEAAITDKTKAIMPVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSD-  194 (374)
T ss_dssp             GGTGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSSSSCCSSC-
T ss_pred             HHHHHhCCCCceEEEEeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCCcCCccce-
Confidence                                      999999999999999999999875433  22333699999977  99986543 


Q ss_pred             eEEEEEEcChhHHHHHHHHHHh------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCC-ce
Q 019543          162 MAGVLAVKGERLAKELYFLQNA------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR-VK  228 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~-i~  228 (339)
                       ||+++++++.+.+.++..+..            +...+++..+++....++.++...+++.++++++.+.|+++++ +.
T Consensus       195 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  273 (374)
T 3uwc_A          195 -AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFID  273 (374)
T ss_dssp             -CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEE
T ss_pred             -eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence             789988876777777665421            1234567777777777777888888888999999999998876 54


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecccccc----CCCCCHHHH
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS----HASIPVEVR  304 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~----h~~~~~~~~  304 (339)
                      .   |..+...         ......+++...+   ..++.+.|+..|+.++.|...++...|....    ...++..  
T Consensus       274 ~---~~~~~~~---------~~~~~~~~~~~~~---~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--  336 (374)
T 3uwc_A          274 V---PVRREGV---------YHVFHIYVLRVKY---RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMA--  336 (374)
T ss_dssp             C---CCCCTTE---------ECCCSSEEEEETT---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHH--
T ss_pred             e---ccCCCCC---------ceeeEEEEEEcCC---HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccH--
Confidence            2   2211100         0111344444443   3456677777788888765333322222110    0011100  


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        ..+..+.|||+++...+++.|+.+.++|++
T Consensus       337 --~~~~~~~lrl~~~~~~t~edi~~~~~~l~~  366 (374)
T 3uwc_A          337 --EKHGEAVITLPAHPYLTEEEINYIIKKVRE  366 (374)
T ss_dssp             --HHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             --HHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence              001236899999987777777777776653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.89  E-value=1.8e-21  Score=184.32  Aligned_cols=242  Identities=16%  Similarity=0.174  Sum_probs=172.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+..++|++.+++++|.++.++++||++|+.. +..+++|||+|+++.+.|+.....++                    
T Consensus        86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  165 (399)
T 3tqx_A           86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAK  165 (399)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECTTCTTHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCCCCHHHHHHH
Confidence            456789999999999999999999999999875 44588999999999998876543222                    


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c---c--CCCeEEEecccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L---E--LGADIVMHSATK  153 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~---~--~~~Di~~~S~sK  153 (339)
                                                   ++|.++|++||+++|+|++|+.+.....    .   .  .+.|++++|+||
T Consensus       166 l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK  245 (399)
T 3tqx_A          166 LKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGK  245 (399)
T ss_dssp             HHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSS
T ss_pred             HHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchH
Confidence                                         8999999999999999999987654321    1   1  256999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      +++|+   .||++++++ ++++.+.....  .++...++...+.+...++.    .+...++..++.+++.+.|+++ ++
T Consensus       246 ~~~g~---~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  320 (399)
T 3tqx_A          246 ALGGA---SGGYTSGHK-EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GF  320 (399)
T ss_dssp             SSCSS---CCEEEEECH-HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             hcccC---ceEEEEcCH-HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            99943   468998875 67777776422  34556777665555555543    3566777778888899988876 33


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                      ..+  +                +.++++++.+.+.....++.+.|...|+.++.+.      .+..      +       
T Consensus       321 ~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~------~~~~------~-------  363 (399)
T 3tqx_A          321 QLV--P----------------GNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFS------YPVV------P-------  363 (399)
T ss_dssp             CBC--C----------------CSSSEEEEEEECHHHHHHHHHHHHHTTEECCEEC------TTTS------C-------
T ss_pred             CcC--C----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeC------CCCC------C-------
Confidence            211  1                2567899988776667788888877788776332      1110      0       


Q ss_pred             CCCCCeEEEEeccCCH----HHHHHHHHHHHhcC
Q 019543          308 GLTEDLVRISVGIEDV----NDLISDLDKALRTG  337 (339)
Q Consensus       308 g~~~~~lRisvg~e~~----~~li~~l~~al~~~  337 (339)
                       -.++.+|||++...+    +.+++.|.++++++
T Consensus       364 -~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          364 -MGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             -TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence             134689999985444    44455555555544

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.88  E-value=3.1e-22  Score=192.98  Aligned_cols=213  Identities=18%  Similarity=0.222  Sum_probs=166.7

Q ss_pred             CCcccCCCCchHHHHHHHHHhHhCCCeEEE---cCcHHHHHHHHH-HhcCCCCEEEEcC-CCccchHHHH----------
Q 019543           46 PYDYTRSGNPTRDALESLLAKLDKADRALC---FTSGMAALAAVT-HLLGTGEEIVAGD-DLYGGTDRLL----------  110 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~g~~~~l~---~~sG~~A~~~il-~ll~~GD~Vi~~~-~~y~~~~~~~----------  110 (339)
                      +|.|+   .+.+++||+.+++++|.+.+++   ++||++|+.+++ ++++|||+|++++ +.|+.+...+          
T Consensus        59 g~~y~---~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~  135 (431)
T 3ht4_A           59 GYGYD---DIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSF  135 (431)
T ss_dssp             TTCCS---CHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCS
T ss_pred             CCCCC---hhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchH
Confidence            34455   3468999999999999998887   899999998654 5899999999998 7777655322          


Q ss_pred             ---H-------------------------------------------------HHHHHHHHH--cCCEEEEeCCcCCCCC
Q 019543          111 ---S-------------------------------------------------RKIAEMAHA--HGALLLVDNSIMSPVL  136 (339)
Q Consensus       111 ---~-------------------------------------------------~~I~~la~~--~g~~livD~a~a~g~~  136 (339)
                         .                                                 ++|+++|++  +|+++++|++|+.+..
T Consensus       136 ~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~  215 (431)
T 3ht4_A          136 KEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE  215 (431)
T ss_dssp             GGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred             HHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence               0                                                 899999999  9999999999998864


Q ss_pred             -cCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCC--CChHHHHHHHhchhhHHHHHHHHH
Q 019543          137 -SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSG--LAPFDCWICLRGVKTMALRVEKQQ  211 (339)
Q Consensus       137 -~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~--~~~~~a~~~~~~l~~~~~r~~~~~  211 (339)
                       .++...++|++++|++|+++|+.+..||+++++ +++++.++.....  .+..  .++..+++++.+++.++.+++++.
T Consensus       216 ~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~-~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~  294 (431)
T 3ht4_A          216 EQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGK-EQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQAL  294 (431)
T ss_dssp             SCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEEC-HHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCeEEEcCccccCCCCCCCceEEEEec-HHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHH
Confidence             566777899999999999998666678999987 4788888765432  2222  222335567788888999999999


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcce
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  276 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~  276 (339)
                      +++++++++|++++.  .+ +|. ++++          +.+-+++|.+++.+++.+|++.|+.+.
T Consensus       295 ~~a~~l~~~L~~~g~--~v-~p~-~~~~----------~~~li~~i~l~~~~~~~~~~~~l~~~~  345 (431)
T 3ht4_A          295 KGAIFTAAFLEKLGM--NT-SPA-WNAP----------RTDLIQSVQFDDKDRMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHHHHHHHHHHTC--CE-ESC-TTSC----------CSSSCCEEECCCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCcC--Ee-cCC-CCCC----------CccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence            999999999998763  34 565 3333          234599999998888999999988764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.88  E-value=2.8e-21  Score=183.21  Aligned_cols=264  Identities=14%  Similarity=0.119  Sum_probs=187.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++...+||+.+++++|.+++++++||++|+.+++ .+ +++||+|+++++.|.+....+.                   
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  133 (391)
T 3dr4_A           54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLD  133 (391)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcC
Confidence            46789999999999999999999999999998644 56 8999999999999988765443                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc--ccCCCeEEEeccc--cccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~--~~~~~Di~~~S~s--K~l~g~~~  160 (339)
                                                 ++|.++|++||+++|+|++|+.|.....  .....|+.+.||+  |++++ + 
T Consensus       134 ~~~l~~~~~~~~~~v~~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g-  211 (391)
T 3dr4_A          134 AAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-G-  211 (391)
T ss_dssp             GGGSGGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-B-
T ss_pred             HHHHHHhcCCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-C-
Confidence                                       9999999999999999999998764322  2222478888866  99975 2 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhc--------------CCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAE--------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~--------------~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                       .||+++++++.+.+.++..+...              ...++++.+++....++.++...++++++++++.+.|++. +
T Consensus       212 -~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  289 (391)
T 3dr4_A          212 -EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARL-G  289 (391)
T ss_dssp             -SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-T
T ss_pred             -CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Confidence             47888888766777776654211              1356677777777677777888888889999999999987 6


Q ss_pred             ceEEec--CCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceecccccc--CCCCC
Q 019543          227 VKKVNY--AGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--HASIP  300 (339)
Q Consensus       227 i~~v~~--p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~--h~~~~  300 (339)
                      +.....  +.   .         ......++++.+.+  .....++.+.|...||.++.|.. .+...|....  ...++
T Consensus       290 ~~~~~~~~~~---~---------~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~-p~~~~~~~~~~~~~~~~  356 (391)
T 3dr4_A          290 NRVTKPHVAL---T---------GRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFH-PMHIMPPYAHLATDDLK  356 (391)
T ss_dssp             TSEECCCCCT---T---------SCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCC-CGGGSGGGGGGCCTTCH
T ss_pred             ccccCcCCCC---C---------CcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCC-ccccChhhhhcCcCCCh
Confidence            553322  11   0         01234567887754  22356777788777998885532 2222222111  11122


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ...+    +..+.||++++...+++.|+.+.++|+++
T Consensus       357 ~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l~~~  389 (391)
T 3dr4_A          357 IAEA----CGVDGLNLPTHAGLTEADIDRVIAALDQV  389 (391)
T ss_dssp             HHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred             HHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            1111    12467999999999999999999998864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.88  E-value=4.4e-21  Score=183.10  Aligned_cols=238  Identities=16%  Similarity=0.135  Sum_probs=170.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+..+++++++++++|.+.+++++||++|+.. +.++++|||+|+++++.|......+.                    
T Consensus       102 ~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~  181 (409)
T 3kki_A          102 NDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRML  181 (409)
T ss_dssp             STTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHH
Confidence            346788999999999999999999999999875 55689999999999998876543322                    


Q ss_pred             ------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEeccccccccC
Q 019543          112 ------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 ------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK~l~g~  158 (339)
                                              ++|.++|++||++||+|++|+.+.++.   .      .....||++.|+||++++.
T Consensus       182 l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~  261 (409)
T 3kki_A          182 IQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR  261 (409)
T ss_dssp             HHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS
T ss_pred             HHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC
Confidence                                    999999999999999999998765421   1      1124689999999999854


Q ss_pred             CCceEEEEEEcChhHHHHHHHHH--HhcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCceEEecC
Q 019543          159 SDVMAGVLAVKGERLAKELYFLQ--NAEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKKVNYA  233 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~~--~~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p  233 (339)
                          ||++++++ ++++.++...  ..++..+++..++.+...++.+   +...++..++.+++.+.|+++. +.   . 
T Consensus       262 ----gg~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~---~-  331 (409)
T 3kki_A          262 ----AGAIWCNN-EVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-LT---I-  331 (409)
T ss_dssp             ----CEEEEESS-SGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-CC---C-
T ss_pred             ----ceEEEECH-HHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-Cc---c-
Confidence                58888876 5666665532  2345567776655555555443   4566677788899999998762 21   1 


Q ss_pred             CCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCe
Q 019543          234 GLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDL  313 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~  313 (339)
                                     .+.+.++++.+++...+.++.+.|...|+.++.+.      .|..      +        ..++.
T Consensus       332 ---------------~~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~------~~~~------~--------~~~~~  376 (409)
T 3kki_A          332 ---------------RSESQIIGLETGDERNTEKVRDYLESNGVFGSVFC------RPAT------S--------KNKNI  376 (409)
T ss_dssp             ---------------CCSSSEEEEEEESHHHHHHHHHHHHHTTEECEEEC------TTSS------C--------TTCEE
T ss_pred             ---------------CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeC------CCCc------C--------CCCcE
Confidence                           12567899988776666778888877787765321      1111      0        13578


Q ss_pred             EEEEeccCCHHHHHHHHHHHHh
Q 019543          314 VRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       314 lRisvg~e~~~~li~~l~~al~  335 (339)
                      |||+++...+++.++.+.++|+
T Consensus       377 iRi~~~~~~t~e~i~~~~~~l~  398 (409)
T 3kki_A          377 IRLSLNSDVNDEQIAKIIEVCS  398 (409)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHH
Confidence            9999987666555555555544

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.88  E-value=2.8e-21  Score=182.99  Aligned_cols=266  Identities=14%  Similarity=0.172  Sum_probs=180.1

Q ss_pred             CCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           51 RSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +..++..++||+++++++|.++.++++||++|+.+++ .+ +++||+|+++.+.|.+....+.                 
T Consensus        34 ~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  113 (388)
T 1b9h_A           34 RMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYN  113 (388)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCC
T ss_pred             ecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCC
Confidence            3457889999999999999999999999999998654 46 7899999999999887654333                 


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc-cCCCeEEEeccc--ccccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL-ELGADIVMHSAT--KFIAG  157 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~-~~~~Di~~~S~s--K~l~g  157 (339)
                                                   ++|.++|++||++||+|++|+.|....  .. .++ |+.+.|||  |+++|
T Consensus       114 ~d~~~l~~~i~~~~~~v~~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g  192 (388)
T 1b9h_A          114 LDPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTA  192 (388)
T ss_dssp             BCHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCS
T ss_pred             CCHHHHHHhcCcCceEEEEeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccC
Confidence                                         999999999999999999998875432  22 223 67788876  77764


Q ss_pred             CCCceEEEEEEcChhH--HHHHHHHHHh-------------cCC--CCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERL--AKELYFLQNA-------------EGS--GLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l--~~~l~~~~~~-------------~~~--~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~  220 (339)
                      +   .||+++++++.+  .+.++.....             .|+  .+++..++++..+++.++.+.++++++++++.+.
T Consensus       193 ~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~  269 (388)
T 1b9h_A          193 G---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRL  269 (388)
T ss_dssp             S---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             C---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   478998886445  4555433211             012  2567766666667778888888888999999999


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceecccccc--C
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISMPCFMS--H  296 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~--h  296 (339)
                      |+++++++.+. +. +..         ....+.+++|.+++.  ....++.+.|...||.++.|.. .....|....  .
T Consensus       270 L~~~~~~~~~~-~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~-~~~~~~~~~~~~~  337 (388)
T 1b9h_A          270 LGAIDGVVPQG-GD-VRA---------DRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR-AIYRTDAFWELGA  337 (388)
T ss_dssp             HHTSTTCEECC-CC-TTC---------CBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC-CGGGSHHHHHSSC
T ss_pred             hccCCCccccC-CC-cCC---------CccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccC-ccccChHhHhcCC
Confidence            99888765321 11 000         011357889988642  3456788888777888875532 1111111000  0


Q ss_pred             C---------CCCHHHHHhCCCCCCeEEEEeccCC-HHHHHHHHHHHHhc
Q 019543          297 A---------SIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRT  336 (339)
Q Consensus       297 ~---------~~~~~~~~~~g~~~~~lRisvg~e~-~~~li~~l~~al~~  336 (339)
                      .         .++...+    +..+.|||+++... +++.++.+.++|++
T Consensus       338 ~~~~~~~~~~~~~~~~~----~~~~~l~l~~~~~~~t~edi~~~~~~l~~  383 (388)
T 1b9h_A          338 PDESVDAIARRCPNTDA----ISSDCVWLHHRVLLAGEPELHATAEIIAD  383 (388)
T ss_dssp             CSSCHHHHHHTCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             CcccccccccCCHHHHH----HHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence            0         0111100    12357999999888 77778888877764

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.88  E-value=7.9e-21  Score=179.48  Aligned_cols=240  Identities=17%  Similarity=0.161  Sum_probs=175.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+...+|++.+++++|.++.++++||++|+..+ ..+++|||+|+++.+.|+.....+.                    
T Consensus        82 ~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  161 (384)
T 1bs0_A           82 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARL  161 (384)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence            4478899999999999999999999999998754 4578999999999998876543322                    


Q ss_pred             --------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---Cc----ccCCCeEEEeccccccccC
Q 019543          112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---RP----LELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------~~I~~la~~~g~~livD~a~a~g~~~---~~----~~~~~Di~~~S~sK~l~g~  158 (339)
                                                ++|.++|++||+++|+|++|+.+...   ..    ...+.|++++|+||+++.+
T Consensus       162 l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~  241 (384)
T 1bs0_A          162 LASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS  241 (384)
T ss_dssp             HHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC
T ss_pred             HHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhcc
Confidence                                      99999999999999999999877542   21    1235799999999999843


Q ss_pred             CCceEEEEEEcChhHHHHHHHHH-H-hcCCCCChHHHHHHHhchhhH-----HHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          159 SDVMAGVLAVKGERLAKELYFLQ-N-AEGSGLAPFDCWICLRGVKTM-----ALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~~-~-~~~~~~~~~~a~~~~~~l~~~-----~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                          ||+++++ +++++.++... . ..++..++...+.+...++.+     +.+.++..++.+++.+.|+++ +++ + 
T Consensus       242 ----GG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-  313 (384)
T 1bs0_A          242 ----GAAVLCS-STVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-PFT-L-  313 (384)
T ss_dssp             ----CEEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCE-E-
T ss_pred             ----CcEEEeC-HHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-CCc-c-
Confidence                4888886 46777776542 2 234457777665554444433     456677788899999999886 333 1 


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCC
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTE  311 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~  311 (339)
                      +|                +.++++++.+++.....++.+.|...|+.++.|..+.      .      +        ..+
T Consensus       314 ~~----------------~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~------~------~--------~~~  357 (384)
T 1bs0_A          314 AD----------------SCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPT------V------P--------AGT  357 (384)
T ss_dssp             CS----------------CCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTS------S------C--------TTC
T ss_pred             cC----------------CCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCC------C------C--------CCC
Confidence            12                1456778877655556778888877788877554211      0      0        134


Q ss_pred             CeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          312 DLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       312 ~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +.+|||++..++++.++.+.++|++
T Consensus       358 ~~~Ri~~~~~~~~~~i~~~~~~l~~  382 (384)
T 1bs0_A          358 ARLRLTLTAAHEMQDIDRLLEVLHG  382 (384)
T ss_dssp             EEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCHHHHHHHHHHHHh
Confidence            6899999998888888888888865

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.87  E-value=7.7e-21  Score=180.99  Aligned_cols=262  Identities=18%  Similarity=0.201  Sum_probs=174.3

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ++...++++.+++++|.+++++++||++|+..++ .+ +++||+|+++.+.|++....+.                    
T Consensus        62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~  141 (399)
T 2oga_A           62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDP  141 (399)
T ss_dssp             SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCH
T ss_pred             chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCH
Confidence            4778999999999999999999999999998655 46 7899999999998887654332                    


Q ss_pred             --------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCC--CeEEEecc--ccccccCCCc
Q 019543          112 --------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELG--ADIVMHSA--TKFIAGHSDV  161 (339)
Q Consensus       112 --------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~--~Di~~~S~--sK~l~g~~~~  161 (339)
                                                ++|.++|+++|+++|+|++|+.+...+....+  .|++++|+  +|+++++|  
T Consensus       142 ~~l~~~i~~~~~~v~~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK~~~~~G--  219 (399)
T 2oga_A          142 LLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFG--  219 (399)
T ss_dssp             HHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTSSSCCSS--
T ss_pred             HHHHHhcCCCCeEEEEeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCccCCcCC--
Confidence                                      99999999999999999999877533322223  69999999  79998755  


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhc----------C--CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          162 MAGVLAVKGERLAKELYFLQNAE----------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~----------~--~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      .||+++++++++.+.++..+...          +  ..+++..++++..+++.++...+++.++++++.+.|+++++++.
T Consensus       220 ~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  299 (399)
T 2oga_A          220 DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGL  299 (399)
T ss_dssp             CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCTTCBC
T ss_pred             ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            47888887667777776654321          1  25678877777778888877788888889999999998877542


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC----CCCCHHHHH
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH----ASIPVEVRQ  305 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h----~~~~~~~~~  305 (339)
                      ...|   +..         ......+++...+   ..++.+.|...|+.++.+........|.....    ..++.... 
T Consensus       300 ~~~~---~~~---------~~~~~~~~~~~~~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-  363 (399)
T 2oga_A          300 PVTA---PDT---------DPVWHLFTVRTER---RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAES-  363 (399)
T ss_dssp             CCCC---TTE---------ECCCSSEEEECSS---HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHH-
T ss_pred             cCCC---CCC---------cceeEEEEEECCC---HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHH-
Confidence            1111   100         0000123443222   34566777667887775421111000100000    00000000 


Q ss_pred             hCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          306 ARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         +..+.|||+++...+++.++.+.++|++
T Consensus       364 ---~~~~~lRi~~~~~~t~edi~~~~~~l~~  391 (399)
T 2oga_A          364 ---FARQVLSLPIGPHLERPQALRVIDAVRE  391 (399)
T ss_dssp             ---HHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred             ---HHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence               0125799999887777666776666653

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.87  E-value=3.8e-21  Score=182.05  Aligned_cols=264  Identities=14%  Similarity=0.180  Sum_probs=181.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++..++||+.+++++|.+++++++||++|+.+++ .+ ++|||+|+++++.|++....+.                   
T Consensus        37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d  116 (393)
T 1mdo_A           37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT  116 (393)
T ss_dssp             SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCC
Confidence            35788999999999999999999999999998655 46 7999999999999887654333                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCC-CeEEEeccc--cccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELG-ADIVMHSAT--KFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~-~Di~~~S~s--K~l~g~~~~  161 (339)
                                                 ++|.++|++||+++|+|++|+.|........+ .|++++|+|  |++++.   
T Consensus       117 ~~~l~~~l~~~~~~v~~~~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K~l~~~---  193 (393)
T 1mdo_A          117 PEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCA---  193 (393)
T ss_dssp             HHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSS---
T ss_pred             HHHHHHhcCCCceEEEEeCCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCCccccc---
Confidence                                       99999999999999999999877432222234 899999999  999752   


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhc----------------------C--CCCChHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 019543          162 MAGVLAVKGERLAKELYFLQNAE----------------------G--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  217 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~----------------------~--~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l  217 (339)
                      .||+++++++++.+.++..+...                      |  ..++++.++++...++.++...++++++++++
T Consensus       194 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l  273 (393)
T 1mdo_A          194 EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQY  273 (393)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899887557777776543210                      1  23577777777777777888888888899999


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+.|++++ ++....|.. .          ..+.+.+++|.+.+   .....++.+.|...|+.++.|.... ...|...
T Consensus       274 ~~~L~~~~-~~~~~~~~~-~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~-~~~~~~~  340 (393)
T 1mdo_A          274 HQAMADLP-FQPLSLPSW-E----------HIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAA-HTQKYYR  340 (393)
T ss_dssp             HHHHHTSS-CEECCCCSS-C----------EECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCG-GGSHHHH
T ss_pred             HHHHhcCC-cccccCCCC-C----------CCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCcc-ccChhhh
Confidence            99999876 432111100 0          01234578888752   1234577778877888888664210 0011000


Q ss_pred             c---CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 S---HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~---h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .   ...++..  ++  +..+.||++++...+++.++.+.++|++
T Consensus       341 ~~~~~~~~~~~--~~--~~~~~lRi~~~~~~t~~~i~~~~~~l~~  381 (393)
T 1mdo_A          341 ERFPTLTLPDT--EW--NSERICSLPLFPDMTESDFDRVITALHQ  381 (393)
T ss_dssp             HHSTTCCCHHH--HH--HHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ccCCccCChhH--HH--HHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence            0   0001100  00  1245799999987777777777777764

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.87  E-value=1.1e-20  Score=179.55  Aligned_cols=239  Identities=16%  Similarity=0.181  Sum_probs=170.3

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHH----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL----------------------  110 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~----------------------  110 (339)
                      .+...+|++++++++|.++.++++||++|+.. +..+++|||+|+++.+.|+.....+                      
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l  168 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARL  168 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECCCCHHHHHHHH
Confidence            57789999999999999899999999999875 4457899999999998875443211                      


Q ss_pred             --------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---Cc------ccCCCeEEEeccccc
Q 019543          111 --------S-------------------RKIAEMAHAHGALLLVDNSIMSPVLS---RP------LELGADIVMHSATKF  154 (339)
Q Consensus       111 --------~-------------------~~I~~la~~~g~~livD~a~a~g~~~---~~------~~~~~Di~~~S~sK~  154 (339)
                              +                   ++|.++|++||+++|+|++|+.+...   ..      +..+.|++++|+||+
T Consensus       169 ~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~  248 (401)
T 1fc4_A          169 KEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA  248 (401)
T ss_dssp             HHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSST
T ss_pred             HHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhh
Confidence                    1                   89999999999999999999766532   11      122569999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      ++++.   ||+++++ +++++.++....  .++..+++..++.+...++.+   +...++..++.+++.+.|+++ +++.
T Consensus       249 ~~~~~---gG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  323 (401)
T 1fc4_A          249 LGGAS---GGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTL  323 (401)
T ss_dssp             TCSSS---CEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred             ccCCC---CEEEEcC-HHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence            95432   5888886 477777766432  235677887777666666655   466777788899999999876 4432


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                        +|                +.++++++.+.+.....++.+.|...|+.++.|..+.      .      +        -
T Consensus       324 --~~----------------~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~------~------~--------~  365 (401)
T 1fc4_A          324 --AG----------------ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPV------V------P--------K  365 (401)
T ss_dssp             --CC----------------SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTS------S------C--------T
T ss_pred             --cC----------------CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCC------C------C--------C
Confidence              12                2567889988665556778888877788877553211      0      0        0


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .++.+|||++...+++.++.+.++|+
T Consensus       366 ~~~~iRi~~~~~~~~~~i~~~~~~l~  391 (401)
T 1fc4_A          366 GQARIRTQMSAAHTPEQITRAVEAFT  391 (401)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            24679999996555554454444443

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.87  E-value=3.5e-21  Score=181.29  Aligned_cols=243  Identities=14%  Similarity=0.105  Sum_probs=167.4

Q ss_pred             CCchHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           53 GNPTRDALESLLAKLDK---ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g---~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ..+...+|++.++++++   .+++++++||++|+.++ ..+++|||+|+++.+.|.+....+.                 
T Consensus        61 ~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  140 (375)
T 3op7_A           61 WIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGW  140 (375)
T ss_dssp             CTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTT
T ss_pred             CCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCC
Confidence            34557899999999863   36899999999999864 4588999999999999987654433                 


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---c-cCCCeEEEecc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---L-ELGADIVMHSA  151 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~-~~~~Di~~~S~  151 (339)
                                                          ++|.++|++||+++|+|++|+.......   . ..+.+++++|+
T Consensus       141 ~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~  220 (375)
T 3op7_A          141 LPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSL  220 (375)
T ss_dssp             EECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEES
T ss_pred             CCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEC
Confidence                                                8999999999999999999976443211   1 12456999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH----HHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM----ALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~----~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      ||+++.+| ..+|+++++ +++.+.++..+...+...++...+++...++..    +.+.++..++++++.+.|++++++
T Consensus       221 sK~~~~~G-~r~G~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  298 (375)
T 3op7_A          221 SKTYSLPG-IRIGWVAAN-HQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEPLV  298 (375)
T ss_dssp             SSSSSCGG-GCCEEEECC-HHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             hhhcCCcc-cceEEEEeC-HHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            99998655 456788774 578888876665555666777666555555443    333444577888899999888776


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ..+ .|.                .+..+++.+.......++++.| +..|+.+..|..+.                    
T Consensus       299 ~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~--------------------  341 (375)
T 3op7_A          299 SYI-RPA----------------VVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFE--------------------  341 (375)
T ss_dssp             EEC-CCS----------------SSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGT--------------------
T ss_pred             eEe-cCC----------------CeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhC--------------------
Confidence            432 221                2334555554333345666665 56788776554211                    


Q ss_pred             CCCCCCeEEEEeccCC--HHHHHHHHHHHHhcC
Q 019543          307 RGLTEDLVRISVGIED--VNDLISDLDKALRTG  337 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~--~~~li~~l~~al~~~  337 (339)
                         .++.+|+|++..+  .++.++.|.++++++
T Consensus       342 ---~~~~iRi~~~~~~~~i~~~l~~l~~~l~~~  371 (375)
T 3op7_A          342 ---RDGYVRLGFACEQETLIKGLEKLSQFLRRF  371 (375)
T ss_dssp             ---CTTEEEECCCSCHHHHHHHHHHHHHHHGGG
T ss_pred             ---CCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence               1468999998753  455566666666543

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.87  E-value=3.7e-20  Score=175.84  Aligned_cols=244  Identities=17%  Similarity=0.175  Sum_probs=170.2

Q ss_pred             ccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           49 YTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      +..+..+.++++++.+++++|.+++++++||++|+..++ .+++|||+|+++++.|+.....++                
T Consensus        82 ~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~~d~~~  161 (398)
T 3a2b_A           82 FLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMED  161 (398)
T ss_dssp             TTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECTTCHHH
T ss_pred             cccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCCCCHHH
Confidence            333456789999999999999999999999999998654 578999999999998876543221                


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---Ccc-c-----CCCeEEEecc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---RPL-E-----LGADIVMHSA  151 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~---~~~-~-----~~~Di~~~S~  151 (339)
                                                     ++|.++|++||+++|+|++|+.+.+.   ... .     .++|++++|+
T Consensus       162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~  241 (398)
T 3a2b_A          162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF  241 (398)
T ss_dssp             HHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecc
Confidence                                           89999999999999999999877542   111 1     1369999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHH-HH-hcCCCCChHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHhCCCC
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFL-QN-AEGSGLAPFDCWICLRGVKTM---ALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~-~~~~~~~~~~a~~~~~~l~~~---~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      ||+++.+    ||+++++ +++++.++.. .. ..+...++...+.+...|+.+   +.+.++..++.+++.+.|+++ +
T Consensus       242 sK~~~~~----GG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  315 (398)
T 3a2b_A          242 SKSLASL----GGFVAGD-ADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-G  315 (398)
T ss_dssp             SSTTCSS----CEEEEEC-HHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             cccccCC----CcEEEeC-HHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-C
Confidence            9999843    3888886 4777777764 22 334455665544443444433   456667778888899988876 4


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ++.  ++                +.+.++++.+++.....++.+.|...|+.++.|..+..   +               
T Consensus       316 ~~~--~~----------------~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~---~---------------  359 (398)
T 3a2b_A          316 FDL--GA----------------TESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAV---P---------------  359 (398)
T ss_dssp             CCB--CS----------------CCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTS---C---------------
T ss_pred             CCc--CC----------------CCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCC---C---------------
Confidence            331  11                13678889887655567788888777888776543210   0               


Q ss_pred             CCCCCCeEEEEeccCCHHH----HHHHHHHHHhc
Q 019543          307 RGLTEDLVRISVGIEDVND----LISDLDKALRT  336 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~~~~----li~~l~~al~~  336 (339)
                        ..++.+|||++...+++    +++.|.+++++
T Consensus       360 --~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          360 --AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             --GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence              02478999999744444    44455555443

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.87  E-value=2.1e-20  Score=178.96  Aligned_cols=265  Identities=17%  Similarity=0.158  Sum_probs=177.6

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      ..+..+++++.+++++|.+++++++||++|+..++ .+ +++||+|+++.+.|.+....+.                   
T Consensus        40 ~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  119 (418)
T 2c81_A           40 EESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCID  119 (418)
T ss_dssp             SCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcC
Confidence            34568999999999999999999999999998654 46 7899999999998887654333                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCC-C-cCcccCCCeEEEecc--ccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPV-L-SRPLELGADIVMHSA--TKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~-~-~~~~~~~~Di~~~S~--sK~l~g~~~  160 (339)
                                                 ++|.++|++||++||+|++|+.+. + ........|+.+.||  ||++++ | 
T Consensus       120 ~~~l~~~i~~~~~~v~~~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~~-g-  197 (418)
T 2c81_A          120 PQLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTA-G-  197 (418)
T ss_dssp             HHHHGGGCCTTEEEECCBCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCS-S-
T ss_pred             HHHHHHhhCCCCeEEEEeCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccCC-C-
Confidence                                       999999999999999999998875 2 222222247888887  999986 4 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh--------------cC------------CCCChHHHHHHHhchhhHHHHHHHHHHHH
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA--------------EG------------SGLAPFDCWICLRGVKTMALRVEKQQDNA  214 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~--------------~~------------~~~~~~~a~~~~~~l~~~~~r~~~~~~~a  214 (339)
                       .||+++++++++.+.++..+..              +.            ..++++.+++....++.++.+.+++++++
T Consensus       198 -~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~  276 (418)
T 2c81_A          198 -EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNA  276 (418)
T ss_dssp             -SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             -CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5889988666777777655421              10            11455566666666777888888888899


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC----HHHHHHHHccCCcc-eee---cccCCccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS----LALSKHVVETTKYF-SIT---VSFGSVKS  286 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~----~~~~~~~~~~L~~~-~i~---v~~G~~~s  286 (339)
                      +++.+.|+++++++....|.   ...        .....+++|.+.+    .....++.+.|... ||.   ++.|. ..
T Consensus       277 ~~l~~~L~~~~g~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~-~p  344 (418)
T 2c81_A          277 MFLNDALSKIDGIKVMKRPP---QVS--------RQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPY-LP  344 (418)
T ss_dssp             HHHHHHHTTSTTEEECCCCT---TEE--------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCC-CC
T ss_pred             HHHHHHhccCCCcccCCCCC---CCc--------ccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccc-cc
Confidence            99999999888765321110   000        0012467777752    22346778888776 888   77654 11


Q ss_pred             ceecccccc--C----------------CCCCHHHHHhCCCCCCeEEEEeccCC-HHHHHHHHHHHHhc
Q 019543          287 LISMPCFMS--H----------------ASIPVEVRQARGLTEDLVRISVGIED-VNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~--h----------------~~~~~~~~~~~g~~~~~lRisvg~e~-~~~li~~l~~al~~  336 (339)
                      ....|....  +                ..++....    +..+.|||+++... +++.++.+.++|++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~lrl~~~~~~gt~edi~~~~~~l~~  409 (418)
T 2c81_A          345 VHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSER----ASGQSIVIHHAILLAEPSHLSLLVDAVAE  409 (418)
T ss_dssp             GGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             cccCchhcccccccccccccccccccccCCChHHHH----HHhCEEEecCCccCCCHHHHHHHHHHHHH
Confidence            111111100  0                01110000    11368999998777 77777777777654

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.86  E-value=1.5e-20  Score=176.57  Aligned_cols=263  Identities=14%  Similarity=0.150  Sum_probs=175.6

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh---cCCCCEEEEcCCCccchHHHHH------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL---LGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l---l~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++..+++|+.+++++|.+++++++||++|+.+++ .+   ++|||+|+++++.|++....+.                  
T Consensus        31 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d  110 (375)
T 2fnu_A           31 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNID  110 (375)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBC
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCC
Confidence            5678999999999999999999999999998654 56   7899999999999987765433                  


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc--ccCCCeEEEeccc--cccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP--LELGADIVMHSAT--KFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~--~~~~~Di~~~S~s--K~l~g~~~  160 (339)
                                                 ++|.++|++||+++|+|++|+.+.....  +....|+++.|+|  |++++ | 
T Consensus       111 ~~~l~~~i~~~~~~v~~~~~tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g-  188 (375)
T 2fnu_A          111 ELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A-  188 (375)
T ss_dssp             GGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S-
T ss_pred             HHHHHhhcCcCceEEEEeCCcCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c-
Confidence                                       9999999999999999999987754322  2211378888888  99974 3 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHh--------------cC--CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNA--------------EG--SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~--------------~~--~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                       .||+++.+++++.+.++.....              .+  ..++++.++++...++.++.+.++..++++++.+.|+++
T Consensus       189 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  267 (375)
T 2fnu_A          189 -EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDN  267 (375)
T ss_dssp             -SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             4666665555677777654321              11  256777777666667777888888899999999999998


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-H-HHHHHHccCCcceeecccCCcccceeccccc---cCCCC
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-A-LSKHVVETTKYFSITVSFGSVKSLISMPCFM---SHASI  299 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~-~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~---~h~~~  299 (339)
                      ++++.. .|  ++.         ..+.+.++++.+... . ...++.+.|...|+.++.+. .+....+...   ....+
T Consensus       268 ~~~~~~-~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~-~p~~~~~~~~~~~~~~~~  334 (375)
T 2fnu_A          268 PYFTPL-HP--LLK---------DKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHY-KPIYQYQLYQQLFNTAPL  334 (375)
T ss_dssp             SSEEES-GG--GCS---------SCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCC-CCGGGSHHHHHHHCCCCC
T ss_pred             CCcccc-CC--CCC---------CCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccc-cccccchhhhcCCCccCC
Confidence            775421 11  000         011234556666432 1 45678888877788877321 1111111000   00001


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +...    ...++.||||++...+++.++.+.++|++
T Consensus       335 ~~~~----~~~~~~lRi~~~~~~t~~~i~~~~~~l~~  367 (375)
T 2fnu_A          335 KSAE----DFYHAEISLPCHANLNLESVQNIAHSVLK  367 (375)
T ss_dssp             HHHH----HHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             hHHH----HHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence            1000    01236799999987777777777777653

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.86  E-value=1.1e-20  Score=179.67  Aligned_cols=246  Identities=18%  Similarity=0.129  Sum_probs=168.9

Q ss_pred             CCCCchHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           51 RSGNPTRDALESLLAKLDKA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ++..+.++++++.+++++|.     +++++++||++|+..++ .++++||+|+++.+.|.+....+.             
T Consensus        78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~  157 (407)
T 3nra_A           78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDY  157 (407)
T ss_dssp             TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeeccc
Confidence            34456788999999999886     67888888899998655 478999999999988765432211             


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc---
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL---  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~---  140 (339)
                                                                  ++|+++|++||+++|+|++|+.+....    .+   
T Consensus       158 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~  237 (407)
T 3nra_A          158 VSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAE  237 (407)
T ss_dssp             CSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGC
T ss_pred             ccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhc
Confidence                                                        889999999999999999998644321    11   


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDN  213 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~  213 (339)
                         ..+.++++.|+||.++.+| ...|+++++ +++++.++.....++...++...+++...++    .++.++++.+++
T Consensus       238 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  315 (407)
T 3nra_A          238 AAVDAENVVTIMGPSKTESLSG-YRLGVAFGS-RAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAI  315 (407)
T ss_dssp             TTSCGGGEEEEECSSSTTCCGG-GCCEEEEEC-HHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHH
T ss_pred             CcccCCcEEEEeCcccccCCCe-eeEEEEEcC-HHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence               1345699999999998655 445788776 5788888877766666667766555544443    356777778888


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCC-cceeecccCCcccceecc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLISMP  291 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p  291 (339)
                      .+++.+.|++++++..+ .|                ..+..+++.+.. .....++.+.|. ..|+.++.|..+.    +
T Consensus       316 ~~~l~~~L~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~  374 (407)
T 3nra_A          316 RDELLHVLRGCEGVFAR-TP----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS----P  374 (407)
T ss_dssp             HHHHHHHHHTSTTCBCC-CC----------------SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC----T
T ss_pred             HHHHHHHHhcCCCceec-cC----------------CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC----C
Confidence            99999999988765421 11                123456666643 234556777774 4688887664321    1


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~  336 (339)
                                       ..++.+|||++..  +.+..++.|.+++++
T Consensus       375 -----------------~~~~~iRis~~~~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          375 -----------------HTADSVRLNFSQDHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             -----------------TCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                             1357899999861  123334455555443

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.86  E-value=1.5e-20  Score=177.03  Aligned_cols=241  Identities=15%  Similarity=0.084  Sum_probs=163.9

Q ss_pred             CchHHHHHHHHHhHhCCC--e-EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccc--hHHHHH----------------
Q 019543           54 NPTRDALESLLAKLDKAD--R-ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGG--TDRLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~-~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~--~~~~~~----------------  111 (339)
                      .+..+++++++++++|.+  + +++++||++|+.+++ .+++|||+|+++++.|++  ....+.                
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  131 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKA  131 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCCCC
Confidence            567899999999999976  4 667788899998654 478999999999999877  332221                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++|+|++|+.+... +....+.|++++|+||+++
T Consensus       132 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~  211 (386)
T 2dr1_A          132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFG  211 (386)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTC
T ss_pred             CCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEecccccc
Confidence                                              99999999999999999999877542 2223478999999999999


Q ss_pred             cCCCceEEEEEEcChhHHHHHH----------------HHH-H-hcCCCCChHHHHHHHhchhh------HHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELY----------------FLQ-N-AEGSGLAPFDCWICLRGVKT------MALRVEKQQD  212 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~----------------~~~-~-~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~  212 (339)
                      ++++  .|++++++ ++.+.++                ... . ......++...+.+...++.      ++.+.++..+
T Consensus       212 ~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~  288 (386)
T 2dr1_A          212 VPPG--LAIGAFSE-RFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEK  288 (386)
T ss_dssp             CCSS--CEEEEECH-HHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCc--eEEEEECH-HHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            7643  57888875 6666652                221 1 22334555444444434433      4556777788


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccc
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      +++++.+.|+++ +++. ..|.    .         ...+.+++|.+++.....++.+.|...|+.++.|..      + 
T Consensus       289 ~~~~l~~~L~~~-g~~~-~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------~-  346 (386)
T 2dr1_A          289 RAKMVREGVREI-GLDI-LAEP----G---------HESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYG------S-  346 (386)
T ss_dssp             HHHHHHHHHHHT-TCCB-SSCT----T---------CBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCG------G-
T ss_pred             HHHHHHHHHHHc-CCee-CcCc----c---------ccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCcc------c-
Confidence            899999999876 5432 1110    0         014678889875333356777777666888775541      1 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                      ..++.+|||++...+++.++.+.++|+
T Consensus       347 ----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~  373 (386)
T 2dr1_A          347 ----------------VKEKTFRIGHMGYMKFEDIQEMLDNLR  373 (386)
T ss_dssp             ----------------GTTTEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             ----------------cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                            034689999997544444444444443

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.86  E-value=6.8e-21  Score=181.47  Aligned_cols=250  Identities=18%  Similarity=0.157  Sum_probs=168.2

Q ss_pred             CchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHH-Hh----cCCCCEEEEcCCCccchH----HHHH----------
Q 019543           54 NPTRDALESLLAKLDKA---DRALCFTSGMAALAAVT-HL----LGTGEEIVAGDDLYGGTD----RLLS----------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il-~l----l~~GD~Vi~~~~~y~~~~----~~~~----------  111 (339)
                      .+..+++++.+++++|.   +++++++||++|+.+++ .+    +++||+|+++++.|++..    ....          
T Consensus        71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~  150 (420)
T 1t3i_A           71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ  150 (420)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEec
Confidence            45678999999999998   67889999999998654 46    789999999999998842    2211          


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccc
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  152 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~s  152 (339)
                                                            ++|.++|++||+++|+|++|+.|... +....+.|++++|+|
T Consensus       151 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~s  230 (420)
T 1t3i_A          151 LDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGH  230 (420)
T ss_dssp             BCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGG
T ss_pred             cCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehh
Confidence                                                  99999999999999999999887543 223346899999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHh--------------------cCCCCChHHHHHHHh-chhh-----HHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNA--------------------EGSGLAPFDCWICLR-GVKT-----MALR  206 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--------------------~~~~~~~~~a~~~~~-~l~~-----~~~r  206 (339)
                      |.++++|   +|++++++ ++.+.++.....                    +..+.++..+++++. .++.     ++..
T Consensus       231 K~~~~~g---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (420)
T 1t3i_A          231 KMCAPTG---IGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENI  306 (420)
T ss_dssp             GTTSCTT---CEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hhcCCCc---eEEEEEch-HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence            9777544   57888864 666655432210                    112344444443322 2332     3556


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .++..++++++.+.|+++++++. ..|..   +        ..+.++++.|.+.+ ....++.+.|...|+.++.|..++
T Consensus       307 ~~~~~~~~~~l~~~L~~~~g~~~-~~~~~---~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~  373 (420)
T 1t3i_A          307 HNYEVELTHYLWQGLGQIPQLRL-YGPNP---K--------HGDRAALASFNVAG-LHASDVATMVDQDGIAIRSGHHCT  373 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTEEE-ESCCG---G--------GSCBCSEEEEEETT-BCHHHHHHHHHTTTEECBCSCTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEE-eCCCc---c--------ccccCCEEEEEECC-CCHHHHHHHHHHCCeEEeeccccc
Confidence            67778889999999998877653 22310   0        00246788888753 224567777777788887664221


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                         .|           .....|. ++.+|||++...+++.++.+.++|+
T Consensus       374 ---~~-----------~~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~  407 (420)
T 1t3i_A          374 ---QP-----------LHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQ  407 (420)
T ss_dssp             ---HH-----------HHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ---hH-----------HHHhcCC-CCeEEEecCCCCCHHHHHHHHHHHH
Confidence               01           0011222 5789999998766666666666654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.86  E-value=2.4e-20  Score=175.11  Aligned_cols=234  Identities=15%  Similarity=0.144  Sum_probs=161.8

Q ss_pred             CCCchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           52 SGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      +.++...+|++++++++|.   +++++++||++|+.+++ .++++||+|+++.+.|.+....+.                
T Consensus        64 y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  143 (367)
T 3euc_A           64 YPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFT  143 (367)
T ss_dssp             SCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSC
T ss_pred             CCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            3446789999999999997   56777777899998654 578999999999988876543322                


Q ss_pred             ------------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCcCc---c-cCCCeEEEe
Q 019543          112 ------------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLSRP---L-ELGADIVMH  149 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~--g~~livD~a~a~g~~~~~---~-~~~~Di~~~  149 (339)
                                                          ++|+++|++|  |+++|+|++|+.......   . ..+.++++.
T Consensus       144 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~  223 (367)
T 3euc_A          144 LDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMR  223 (367)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEE
T ss_pred             CCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEe
Confidence                                                7888999999  999999999975332211   1 234569999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      |+||+ +.+| ...|+++++ +++.+.++....  ....++...+.+...|+.   +..+.++..++.+++.+.|+++|+
T Consensus       224 s~sK~-~~~G-~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g  298 (367)
T 3euc_A          224 TVSKL-GLAG-IRLGYVAGD-PQWLEQLDKVRP--PYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGG  298 (367)
T ss_dssp             ECCCT-TSCS-CCEEEEEEC-HHHHHHHGGGCC--SSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             cchhh-cccc-cCceeeeeC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999 6554 557888886 467666654332  344566655555444433   566777788889999999999887


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ++ + +|.                .+.++++.+.   ...++.+.|+..|+.++.|..+.    +               
T Consensus       299 ~~-~-~~~----------------~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~----~---------------  338 (367)
T 3euc_A          299 VT-V-FPS----------------AANFLLARVP---DAAQTFDRLLARKVLIKNVSKMH----P---------------  338 (367)
T ss_dssp             CE-E-CCC----------------SSSEEEEECS---CHHHHHHHHHTTTEECEECGGGC----G---------------
T ss_pred             cE-E-CCC----------------CCeEEEEECC---CHHHHHHHHHHCCeEEEECCccC----C---------------
Confidence            75 2 331                4567778776   34566777777888887654321    1               


Q ss_pred             CCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          307 RGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                        ..++.+|||++.   ++.++.+.++|+
T Consensus       339 --~~~~~iRis~~~---~~~i~~~~~~l~  362 (367)
T 3euc_A          339 --LLANCLRVTVST---PEENAQFLEAFA  362 (367)
T ss_dssp             --GGTTEEEEECCC---HHHHHHHHHHHH
T ss_pred             --CCCCEEEEecCC---HHHHHHHHHHHH
Confidence              135789999983   333445555544

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.85  E-value=5.4e-20  Score=173.76  Aligned_cols=253  Identities=17%  Similarity=0.160  Sum_probs=167.6

Q ss_pred             CCcccCCCCchHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           46 PYDYTRSGNPTRDALESLLAKLDK----ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      .+.|+....+..+++.+.+++.+|    .+.++++++|++|+.++ ..++++||+|+++.+.|.+....+.         
T Consensus        57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~  136 (391)
T 3dzz_A           57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISS  136 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEEC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEe
Confidence            345554444566777777777776    45788888889999854 4578999999999998876653322         


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----Ccc
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPL  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~  140 (339)
                                                                    ++|+++|++||+++|+|++|+.+...     ...
T Consensus       137 ~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~  216 (391)
T 3dzz_A          137 DLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAF  216 (391)
T ss_dssp             CCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGG
T ss_pred             eeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehh
Confidence                                                          88999999999999999999754331     111


Q ss_pred             cCC---Ce--EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHHHHHHHhchhh----HHHHHHHH
Q 019543          141 ELG---AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVKT----MALRVEKQ  210 (339)
Q Consensus       141 ~~~---~D--i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l~~----~~~r~~~~  210 (339)
                      ...   .|  +++.|+||+++.+| ...|+++++++++.+.++......+ ...++...+.+...++.    ++.+.++.
T Consensus       217 ~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  295 (391)
T 3dzz_A          217 TVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVL  295 (391)
T ss_dssp             GSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            222   45  99999999997555 4567888875678888877654333 34455444433333332    56667777


Q ss_pred             HHHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccC-CcceeecccCCcccc
Q 019543          211 QDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSL  287 (339)
Q Consensus       211 ~~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L-~~~~i~v~~G~~~s~  287 (339)
                      .++.+++.+.|++ +|++.. ..|.                .+.++++.+... ....++.+.| +..|+.++.|..+..
T Consensus       296 ~~~~~~l~~~l~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~  358 (391)
T 3dzz_A          296 RDNFAYAREFLAKEVPEVKV-LDSN----------------ASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRG  358 (391)
T ss_dssp             HHHHHHHHHHHHHHCTTSEE-CCCC----------------BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCT
T ss_pred             HHHHHHHHHHHHhhCCCcEE-eccC----------------ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence            8889999999988 777642 2221                233455665421 2356778887 478998886653211


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhcC
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  337 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~~  337 (339)
                                           ..++.+|||++.  ++.++.++.|.++++++
T Consensus       359 ---------------------~~~~~iRis~~~~~~~i~~~l~~l~~~l~~~  389 (391)
T 3dzz_A          359 ---------------------NGHEFVRINLACPKELVIDGMQRLKQGVLNL  389 (391)
T ss_dssp             ---------------------TGGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred             ---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                                 024789999994  22344456666666554

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.85  E-value=5e-20  Score=174.66  Aligned_cols=262  Identities=17%  Similarity=0.142  Sum_probs=178.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-------cCCCCEEEEcCCCccchHHHHH-------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-------LGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-------l~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      .++..+++|+.+++++|.+++++++||++|+..++ .+       +++||+|+++.+.|.+....+.             
T Consensus        32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~  111 (390)
T 3b8x_A           32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI  111 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc
Confidence            46789999999999999999999999999998544 46       7899999999998877654332             


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCC--eEEEecc--ccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGA--DIVMHSA--TKF  154 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~--Di~~~S~--sK~  154 (339)
                                                       ++|.++|++||+++|+|++|+.|...+....+.  |+.++|+  +|.
T Consensus       112 ~~~~~d~~~l~~~i~~~~~~v~~~~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~~s~~~~k~  191 (390)
T 3b8x_A          112 NTLNIDIESLKEAVTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGTFSSFYSNH  191 (390)
T ss_dssp             TTCSBCHHHHHHHCCTTEEEEEEECGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cccCcCHHHHHHHhCcCCeEEEEECCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEEEEccCCCC
Confidence                                             999999999999999999999876544333444  5655553  455


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh-----------------------------cC--CCCChHHHHHHHhchhhH
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA-----------------------------EG--SGLAPFDCWICLRGVKTM  203 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-----------------------------~~--~~~~~~~a~~~~~~l~~~  203 (339)
                      +++   ..||+++++++.+.++++..+..                             .|  ..+++..+++++.+++.+
T Consensus       192 ~~~---g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l  268 (390)
T 3b8x_A          192 IAT---MEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKL  268 (390)
T ss_dssp             SCS---SSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHH
T ss_pred             Ccc---CCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHH
Confidence            542   24789998875666666554310                             01  226788888887778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeeccc
Q 019543          204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~  281 (339)
                      +++.++++++++++.+.|+++++++.   +..+.           .+...++++.+.+  .....++.+.|+..||.++.
T Consensus       269 ~~~~~~~~~~~~~l~~~L~~~~~~~~---~~~~~-----------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~  334 (390)
T 3b8x_A          269 PRFISVRRKNAEYFLDKFKDHPYLDV---QQETG-----------ESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP  334 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSEEE---CCCCS-----------BCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCccc---CCCCC-----------CcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence            88899999999999999998887642   21110           1122346666652  11345677777777888775


Q ss_pred             CCcccceec-cccc--cC---CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          282 GSVKSLISM-PCFM--SH---ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       282 G~~~s~~~~-p~~~--~h---~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +...+.... |...  .|   ..++....    +..+.|||+++...+++.++.+.++|+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~l~~~~~~t~~di~~i~~~l~  390 (390)
T 3b8x_A          335 IVTGNFLKNTDVLKYFDYTVHNNVDNAEY----LDKNGLFVGNHQIELFDEIDYLREVLK  390 (390)
T ss_dssp             STTSSGGGCHHHHTTCEEEESSCCHHHHH----HHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred             ecCCchhhcchhhhcCCCCCcCCChHHHH----HhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence            321122122 2210  01   12221111    123579999999999999999988874

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.85  E-value=8.7e-20  Score=171.06  Aligned_cols=235  Identities=16%  Similarity=0.144  Sum_probs=166.2

Q ss_pred             CCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           52 SGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +.++...+|++++++++|  .+++++++||++|+.+++ .+++|||+|+++.+.|.+....+.                 
T Consensus        62 y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~  141 (360)
T 3hdo_A           62 YPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI  141 (360)
T ss_dssp             CCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB
T ss_pred             CCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH
Confidence            344556899999999998  457889999999998654 578999999999999988765443                 


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc----cCCCeEEEeccccccccCCC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL----ELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~----~~~~Di~~~S~sK~l~g~~~  160 (339)
                                                 ++|.++|+++|+++|+|++|+........    ..+.+++++|+||+++.+| 
T Consensus       142 ~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-  220 (360)
T 3hdo_A          142 AGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAG-  220 (360)
T ss_dssp             TTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTT-
T ss_pred             HHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCc-
Confidence                                       89999999999999999999742111111    1245699999999998655 


Q ss_pred             ceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCC
Q 019543          161 VMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  237 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~  237 (339)
                      ...|+++++ +++.+.++....  ....++...+.+...|+   .++.+.++..++.+++.+.|+++ ++..  +|    
T Consensus       221 ~r~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~--~~----  290 (360)
T 3hdo_A          221 MRIGLAIAR-PEVIAALDKIRD--HYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYDV--IP----  290 (360)
T ss_dssp             SCCEEEECC-HHHHHHHHHHSC--SCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCEE--CC----
T ss_pred             cceeeEeeC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE--cC----
Confidence            446788775 577777765542  34566766555544443   35667777788889999999877 5432  22    


Q ss_pred             CCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE
Q 019543          238 HPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS  317 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis  317 (339)
                                  +.+..+++.+.+. ...++.+.|...|+.++.|..      +                 -.++.+|||
T Consensus       291 ------------~~~~~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~~------~-----------------~~~~~iRis  334 (360)
T 3hdo_A          291 ------------SQGNYLFATPPDR-DGKRVYDGLYARKVLVRHFSD------P-----------------LLAHGMRIS  334 (360)
T ss_dssp             ------------CSSSEEEEECTTC-CHHHHHHHHHHTTEECBCCCS------T-----------------TTTTSEEEE
T ss_pred             ------------CCccEEEEECCCC-CHHHHHHHHHHCCEEEEECCC------C-----------------CCCCEEEEE
Confidence                        1456778876532 345677777777888775432      1                 034789999


Q ss_pred             eccCCHHHHHHHHHHHHhc
Q 019543          318 VGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       318 vg~e~~~~li~~l~~al~~  336 (339)
                      ++   .++.++.|.++|++
T Consensus       335 ~~---~~~e~~~l~~al~~  350 (360)
T 3hdo_A          335 IG---TREEMEQTLAALKE  350 (360)
T ss_dssp             CC---CHHHHHHHHHHHHH
T ss_pred             cC---CHHHHHHHHHHHHH
Confidence            98   34555667777664

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.85  E-value=1.2e-19  Score=171.38  Aligned_cols=249  Identities=11%  Similarity=0.139  Sum_probs=165.6

Q ss_pred             CCcccCCCCchHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           46 PYDYTRSGNPTRDALESLLAKLDK----ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      .+.|+....+..+++++.+++++|    .+++++++||++|+.++ ..++++||+|+++.+.|.+....+.         
T Consensus        62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~  141 (391)
T 4dq6_A           62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIIS  141 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEee
Confidence            355666556778889999998887    45788899999999854 4578999999999987765432111         


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cc-c
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PL-E  141 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~-~  141 (339)
                                                                   ++|+++|++||+++|+|++|+..... .   ++ .
T Consensus       142 ~~~~~~~~~~~~d~~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  221 (391)
T 4dq6_A          142 PLQKLENGNYIMDYEDIENKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMAS  221 (391)
T ss_dssp             CCEECTTSCEECCHHHHHHHCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             eeeecCCCceEeeHHHHHHHhhcCCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHH
Confidence                                                         88999999999999999999764331 1   11 1


Q ss_pred             C-----CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHHHHHHHhchhh----HHHHHHHHH
Q 019543          142 L-----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGVKT----MALRVEKQQ  211 (339)
Q Consensus       142 ~-----~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l~~----~~~r~~~~~  211 (339)
                      .     +..+++.|+||.++.+| ...|+++++++++.+.++......+ ...++...+.+...++.    ++.+.++.+
T Consensus       222 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  300 (391)
T 4dq6_A          222 ISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLE  300 (391)
T ss_dssp             SCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            2     22389999999997655 4567888876578888877655443 35566554444443332    556677777


Q ss_pred             HHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcc-eeecccCCcccce
Q 019543          212 DNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYF-SITVSFGSVKSLI  288 (339)
Q Consensus       212 ~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~-~i~v~~G~~~s~~  288 (339)
                      ++.+++.+.|++ +|++..+ .|                ..+.++++.+.. .....++.+.|... |+.++.|..+.. 
T Consensus       301 ~~~~~l~~~l~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-  362 (391)
T 4dq6_A          301 SNIDFAIKYINENMPKLKVR-KP----------------EGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGI-  362 (391)
T ss_dssp             HHHHHHHHHHHHHCTTSEEC-CC----------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCT-
T ss_pred             HHHHHHHHHHHhhCCCCEec-CC----------------CccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCC-
Confidence            888899999987 6776432 11                023344566642 12345677777665 888876643210 


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                          ..++.+|||++.  +++.++.+.++|+
T Consensus       363 --------------------~~~~~iRis~~~--~~~~i~~~l~~l~  387 (391)
T 4dq6_A          363 --------------------GGSGYQRINLAC--PRSMLEEALIRIK  387 (391)
T ss_dssp             --------------------TCTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred             --------------------CCCCeEEEEEcC--CHHHHHHHHHHHH
Confidence                                135789999994  3344444444443

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.84  E-value=3.4e-20  Score=177.22  Aligned_cols=254  Identities=18%  Similarity=0.152  Sum_probs=161.9

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hc----CCCCEEEEcCCCccchHHHH---H-----------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LL----GTGEEIVAGDDLYGGTDRLL---S-----------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll----~~GD~Vi~~~~~y~~~~~~~---~-----------  111 (339)
                      ..+..+++++++++++|.+  ++++++||++|+.+++. +.    +|||+|+++++.|++....+   .           
T Consensus        66 ~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~  145 (423)
T 3lvm_A           66 AEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP  145 (423)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEecc
Confidence            3456789999999999987  78899999999985443 44    38999999999988764332   1           


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++|++||++||+|++|+.+.. ......+.|++++|+||
T Consensus       146 ~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK  225 (423)
T 3lvm_A          146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHK  225 (423)
T ss_dssp             CTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTT
T ss_pred             CCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHH
Confidence                                                 8999999999999999999988755 23334578999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHh
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~  222 (339)
                      .+++.+   .|++++++ +..+.+....       .......++...+.+...++.    ++...++..++++++.+.|+
T Consensus       226 ~~g~~g---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (423)
T 3lvm_A          226 IYGPKG---IGALYVRR-KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK  301 (423)
T ss_dssp             TTSCSS---CEEEEECB-TTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCC---eEEEEEec-cccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877543   46777765 3333332211       011223344333322222222    35567777888999999999


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +++++..+..+.              ...++++.|.+.+. ...++.+.|..  +.++.|..+......        +..
T Consensus       302 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~l~~~l~~--i~v~~g~~~~~~~~~--------~~~  356 (423)
T 3lvm_A          302 DIEEVYLNGDLE--------------HGAPNILNVSFNYV-EGESLIMALKD--LAVSSGSACTSASLE--------PSY  356 (423)
T ss_dssp             TSTTEEEESCST--------------TBCTTEEEEEETTS-CHHHHHHHTTT--EECBCCCC-----CC--------CCH
T ss_pred             cCCCEEEeCCcc--------------ccCCCeEEEEeCCC-CHHHHHHHHhh--heeccCccccCCCcc--------ccH
Confidence            888875432111              11345777777432 34567777766  777766532221000        011


Q ss_pred             HHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          303 VRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       303 ~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ....+|+.    ++.|||+++...+++.++.+.++|+
T Consensus       357 ~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~  393 (423)
T 3lvm_A          357 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVR  393 (423)
T ss_dssp             HHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence            22234443    4789999997665555555555544

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.84  E-value=2.4e-19  Score=167.65  Aligned_cols=238  Identities=12%  Similarity=0.089  Sum_probs=164.0

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++...+++++++++++.  +++++++||++|+.+++..+   |+|+++.+.|.+....+.                   
T Consensus        59 ~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~---d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  135 (361)
T 3ftb_A           59 PDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF---EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDY  135 (361)
T ss_dssp             CCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC---SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCH
T ss_pred             CCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc---CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCH
Confidence            456678999999999985  46778888899998777655   999999998887654332                   


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---Cccc----CCCeEEEecccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---RPLE----LGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~---~~~~----~~~Di~~~S~sK  153 (339)
                                                     ++|+++|++||+++|+|++|+.....   ....    .+.+++++|+||
T Consensus       136 ~~l~~~l~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  215 (361)
T 3ftb_A          136 EDIISKIDDVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTK  215 (361)
T ss_dssp             HHHHHHTTTCSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSS
T ss_pred             HHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChh
Confidence                                           78899999999999999999754331   1111    233588999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      .++.+| ...|++++.++++.+.++....  ....++...+.+...++   .++.+.++..++.+++.+.|+++|++..+
T Consensus       216 ~~~~~G-~r~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  292 (361)
T 3ftb_A          216 FFAMPG-IRFGYGITNNKEIAAKIKAKQN--PWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRV  292 (361)
T ss_dssp             TTSCGG-GCCEEEEESCHHHHHHHHTTSC--TTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred             hcCCCC-cceeEEEeCCHHHHHHHHhhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee
Confidence            998655 4457777445677777665432  34566666665555554   34566777788899999999988876523


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                      ..|                 .++++++.+.+ ....++.+.|...|+.++.|..+.                     +..
T Consensus       293 ~~~-----------------~~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~g~~~~---------------------~~~  333 (361)
T 3ftb_A          293 FSP-----------------HANFVLCRLEN-ISGEKLYDSLLKEDIVIRRCCNFI---------------------GLD  333 (361)
T ss_dssp             ECC-----------------SSSEEEEEESS-SCHHHHHHHHHTTTEECEECTTST---------------------TCC
T ss_pred             cCC-----------------CCeEEEEEcCC-CCHHHHHHHHHHCCeEEeeCccCC---------------------CCC
Confidence            322                 45678888754 234567777766688887664321                     024


Q ss_pred             CCeEEEEeccCCH-HHHHHHHHHHHh
Q 019543          311 EDLVRISVGIEDV-NDLISDLDKALR  335 (339)
Q Consensus       311 ~~~lRisvg~e~~-~~li~~l~~al~  335 (339)
                      ++.+|+|++.++. +++++.|.+.++
T Consensus       334 ~~~iRis~~~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          334 DSFVRFAIKDEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             TTEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            5789999995432 445555544443

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.84  E-value=6e-20  Score=174.56  Aligned_cols=255  Identities=16%  Similarity=0.080  Sum_probs=169.1

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-h---cCCCCEEEEcCCCccchHHHH-------H--
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-L---LGTGEEIVAGDDLYGGTDRLL-------S--  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-l---l~~GD~Vi~~~~~y~~~~~~~-------~--  111 (339)
                      |.|++...+..+++++.+++++|.+  .++++++|++|+.+++. +   +++||+|+++++.|++....+       .  
T Consensus        61 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~  140 (406)
T 3cai_A           61 HPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK  140 (406)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence            3343334567899999999999975  57777777888876554 5   789999999999887643211       0  


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeE
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADI  146 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di  146 (339)
                                                                  ++|.++|++||+++|+|++|+.|... +....+.|+
T Consensus       141 v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~  220 (406)
T 3cai_A          141 VKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADV  220 (406)
T ss_dssp             EEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSE
T ss_pred             EEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCE
Confidence                                                        99999999999999999999877542 222347899


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---------hcCCCCChHHHHH---HHhchh-------------
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---------AEGSGLAPFDCWI---CLRGVK-------------  201 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---------~~~~~~~~~~a~~---~~~~l~-------------  201 (339)
                      +++|+||+++ ++  .||++++++ ++.+.++....         ......++...+.   ++..++             
T Consensus       221 ~~~s~~K~~g-~~--~G~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  296 (406)
T 3cai_A          221 VTVNAHAWGG-PP--IGAMVFRDP-SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER  296 (406)
T ss_dssp             EEEEGGGGTS-CS--CEEEEESCH-HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred             EEeehhhhcC-CC--cCeEEEEeh-HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence            9999999876 32  343888764 56555543211         1122334332221   222222             


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          202 ---TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       202 ---~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                         .++...++..++++++.+.|+++++++ +..|.              ...+++++|.+.+. ...++.+.|...|+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~L~~~gi~  360 (406)
T 3cai_A          297 LAVSMQSADAYLNRVFDYLMVSLRSLPLVM-LIGRP--------------EAQIPVVSFAVHKV-PADRVVQRLADNGIL  360 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCTTEE-ECCCC--------------SSBCSEEEEEETTB-CHHHHHHHHHHTTEE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCCeE-EcCCc--------------cccCCEEEEEECCc-CHHHHHHHHHHCCcE
Confidence               245556667788999999999887764 22221              11356888887532 245677777677888


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCC--CCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLT--EDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~--~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++.|.....                ...+|..  .+.+|||++..++++.++.+.++|+++
T Consensus       361 v~~g~~~~~----------------~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          361 AIANTGSRV----------------LDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             CEECCSCHH----------------HHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             EecCChHHH----------------HHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence            876641110                0122332  478999999988888889999998764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.84  E-value=2.4e-20  Score=174.41  Aligned_cols=211  Identities=13%  Similarity=0.068  Sum_probs=147.1

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCC--EEEEcCCCccchH----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGE--EIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD--~Vi~~~~~y~~~~----------------------  107 (339)
                      .++...+||+++++++|.+..++++||++|+.+ +..++.+||  +|+++++.+....                      
T Consensus        45 ~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  124 (357)
T 3lws_A           45 TGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADRL  124 (357)
T ss_dssp             EETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTSC
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCCC
Confidence            357899999999999999999999999999875 445778888  7777654322110                      


Q ss_pred             ---HHHH---------------------------HHHHHHHHHcCCEEEEeCCcCC---CCCcC---cccCCCeEEEecc
Q 019543          108 ---RLLS---------------------------RKIAEMAHAHGALLLVDNSIMS---PVLSR---PLELGADIVMHSA  151 (339)
Q Consensus       108 ---~~~~---------------------------~~I~~la~~~g~~livD~a~a~---g~~~~---~~~~~~Di~~~S~  151 (339)
                         ..+.                           ++|+++|++||++||+|++|..   +..+.   .+....|+++.|+
T Consensus       125 ~d~~~l~~~~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~  204 (357)
T 3lws_A          125 MTLDEIKALPDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISF  204 (357)
T ss_dssp             CCHHHHHTCCSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEES
T ss_pred             cCHHHHhcCcCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEec
Confidence               0000                           8899999999999999999862   11111   1223578999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      ||+++++.   ||+++++ +++++.++..+..++..+  ....+..+..+++...+++++..++++++.+.|+++++++.
T Consensus       205 sK~~~~~~---gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  280 (357)
T 3lws_A          205 YKGLGGIA---GAILAGP-AAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGVHT  280 (357)
T ss_dssp             SSTTCCSS---CEEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             cccCCCCc---eEEEEcC-HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCee
Confidence            99997653   4788776 478888877665554332  23333344455666555666677888999999999988754


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      ...|.                .+.++++.+.+.  ....++.+.|.+.|+.++.|.
T Consensus       281 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~  320 (357)
T 3lws_A          281 TPEVP----------------VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYL  320 (357)
T ss_dssp             ESSSC----------------SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCC
T ss_pred             ccCCC----------------cceEEEEEecCChHHHHHHHHHHHHhcCeEEeccc
Confidence            33332                467888887432  335677788888899888663

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.84  E-value=1.7e-19  Score=170.80  Aligned_cols=247  Identities=18%  Similarity=0.183  Sum_probs=164.4

Q ss_pred             CchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHH-Hh----cCCCCEEEEcCCCccchHHH----HH----------
Q 019543           54 NPTRDALESLLAKLDKA---DRALCFTSGMAALAAVT-HL----LGTGEEIVAGDDLYGGTDRL----LS----------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il-~l----l~~GD~Vi~~~~~y~~~~~~----~~----------  111 (339)
                      .+..+++++++++++|.   +.+++++||++|+.+++ .+    +++||+|+++++.|++....    ..          
T Consensus        66 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~  145 (406)
T 1kmj_A           66 TEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIP  145 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEe
Confidence            45678999999999998   46778888899998654 46    78999999999998765321    11          


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccc
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSAT  152 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~s  152 (339)
                                                            ++|.++|++||+++|+|++|+.|... +....+.|++++|+|
T Consensus       146 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~  225 (406)
T 1kmj_A          146 LNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH  225 (406)
T ss_dssp             BCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGG
T ss_pred             cCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEch
Confidence                                                  99999999999999999999877542 212346899999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHH---------------------hcCCCCChHHHHHHH-hchhh-----HHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQN---------------------AEGSGLAPFDCWICL-RGVKT-----MAL  205 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---------------------~~~~~~~~~~a~~~~-~~l~~-----~~~  205 (339)
                      |.++++|   .|+++++ +++.+.++....                     .+..+.++..+++++ ..++.     ++.
T Consensus       226 K~~g~~G---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~  301 (406)
T 1kmj_A          226 KLYGPTG---IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNN  301 (406)
T ss_dssp             GTTSCTT---CEEEEEC-HHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hccCCCC---cEEEEEe-HHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence            9996544   4788886 466666543220                     111223444333322 23332     335


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcc
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  285 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~  285 (339)
                      ..++..++++++.+.|+++++++.+ .|.               +.++++.|.+.+. ...++.+.|...|+.++.|...
T Consensus       302 ~~~~~~~~~~~l~~~L~~~~~~~~~-~~~---------------~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~  364 (406)
T 1kmj_A          302 IAEYEQNLMHYALSQLESVPDLTLY-GPQ---------------NRLGVIAFNLGKH-HAYDVGSFLDNYGIAVRTGHHC  364 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTEEEE-SCT---------------TCCSEEEEEETTC-CHHHHHHHHHHTTEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeEEe-cCC---------------CcCCEEEEEECCC-CHHHHHHHHhhCCcEEEecccc
Confidence            5666778889999999988776532 221               1467888877532 2345667777778887765421


Q ss_pred             cceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          286 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       286 s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +   .|           ....+|. ++.+|||++..++++.++.+.++|++
T Consensus       365 ~---~~-----------~~~~~g~-~~~iRis~~~~~t~~~i~~~~~~l~~  400 (406)
T 1kmj_A          365 A---MP-----------LMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQR  400 (406)
T ss_dssp             C---HH-----------HHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             c---hH-----------HHHhcCC-CCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            1   01           0112232 47899999987666666666666653

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.84  E-value=5.8e-19  Score=167.70  Aligned_cols=240  Identities=18%  Similarity=0.144  Sum_probs=166.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-h--cCCCCEEEEcCCCccchHHHHH------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L--LGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-l--l~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..+..+++++++++++|.++.++++||++++.+++. +  ..|||+|+++.+.|++....++                  
T Consensus        89 ~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~le  168 (401)
T 2bwn_A           89 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLR  168 (401)
T ss_dssp             CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCCCHHHHH
Confidence            346789999999999999999999999887765544 3  3699999999988876542221                  


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc----c--CCCeEEEecccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL----E--LGADIVMHSATK  153 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~----~--~~~Di~~~S~sK  153 (339)
                                                   ++|.++|++||+++|+|++|+.|.++.   ..    .  ...|++++|+||
T Consensus       169 ~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK  248 (401)
T 2bwn_A          169 ELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAK  248 (401)
T ss_dssp             HHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSS
T ss_pred             HHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechh
Confidence                                         999999999999999999998665421   11    1  135899999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---H--HHHHHHHHHHHHHHHHHHhCCCC
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---M--ALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~--~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      +++++    ||+++++ +++.+.++....  .++...++...+.+...++.   .  +...++..++.+++.+.|+++ +
T Consensus       249 ~~~~~----GG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  322 (401)
T 2bwn_A          249 AYGVF----GGYIAAS-ARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-G  322 (401)
T ss_dssp             TTCSC----CEEEEEC-HHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred             hccCC----CCEEecC-HHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-C
Confidence            99954    4888876 467777665322  23444556544444444433   2  556777778888899988875 4


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      ++.+  +                ..+++++|.+++.....++.+.|. ..|+.++.+..      +..      +     
T Consensus       323 ~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~------~~~------~-----  367 (401)
T 2bwn_A          323 MPII--D----------------HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINF------PTV------P-----  367 (401)
T ss_dssp             CCBC--C----------------CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECT------TTS------C-----
T ss_pred             Cccc--C----------------CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCC------CCC------C-----
Confidence            4311  1                134689999876555677888884 67888764321      100      0     


Q ss_pred             hCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          306 ARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         -..+.+|+|++..++++.++.+.++|++
T Consensus       368 ---~~~~~iRis~~~~~t~~~i~~~~~~l~~  395 (401)
T 2bwn_A          368 ---RGTERLRFTPSPVHDLKQIDGLVHAMDL  395 (401)
T ss_dssp             ---TTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             ---CCCceEEEEeeCCCCHHHHHHHHHHHHH
Confidence               0235899999987777777777777654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.83  E-value=3.2e-19  Score=167.11  Aligned_cols=234  Identities=13%  Similarity=0.124  Sum_probs=162.5

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .++...++++++++++|.  +++++++||++|+.+++ .++++||+|+++++.|.+....+.                  
T Consensus        65 ~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  144 (363)
T 3ffh_A           65 PDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHD  144 (363)
T ss_dssp             ----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCC
T ss_pred             CCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcC
Confidence            345678999999999985  57888899999998654 578999999999999887654433                  


Q ss_pred             ------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCcC---cc----cCCCeEEEeccc
Q 019543          112 ------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLSR---PL----ELGADIVMHSAT  152 (339)
Q Consensus       112 ------------------------------~~I~~la~~~--g~~livD~a~a~g~~~~---~~----~~~~Di~~~S~s  152 (339)
                                                    ++|.++++.+  |+++|+|++|+......   ..    ....++++.|+|
T Consensus       145 ~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  224 (363)
T 3ffh_A          145 LEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFS  224 (363)
T ss_dssp             HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESS
T ss_pred             HHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeech
Confidence                                          7788888777  99999999998433211   11    123358899999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+|. ..|+++++ +++.+.++....  ....++...+.+...+   +.++.+.++..++.+++.+.|++++++..
T Consensus       225 K~~g~~G~-r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~  300 (363)
T 3ffh_A          225 KIYGLASA-RVGYGIAD-KEIIRQLNIVRP--PFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKL  300 (363)
T ss_dssp             STTCCSSC-CCEEEEEC-HHHHHHHHHTCC--SCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred             hhhcCchh-ceeeeecC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCCCceE
Confidence            99986653 45677775 467777765432  4456776665555555   44566777778889999999988666642


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                        +|.                .+.++++.++.  ...++.+.|...|+.++.|..+                      | 
T Consensus       301 --~~~----------------~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~----------------------~-  337 (363)
T 3ffh_A          301 --YPA----------------NGNFVLIDLGI--EAGTIFSYLEKNGYITRSGAAL----------------------G-  337 (363)
T ss_dssp             --CCC----------------CSSEEEEECSS--CHHHHHHHHHHTTEECEETTTT----------------------T-
T ss_pred             --CCC----------------CCeEEEEECCC--CHHHHHHHHHHCCeEEEeCccC----------------------C-
Confidence              231                35678888764  3456777777778887765421                      1 


Q ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          310 TEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       310 ~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .++.+|||++   +++.++.+.++|++
T Consensus       338 ~~~~iRis~~---~~~~i~~~~~~l~~  361 (363)
T 3ffh_A          338 FPTAVRITIG---KEEDNSAVIALLEK  361 (363)
T ss_dssp             CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred             CCCeEEEECC---CHHHHHHHHHHHHH
Confidence            1478999998   44455666666654

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.83  E-value=7.7e-20  Score=178.53  Aligned_cols=251  Identities=18%  Similarity=0.163  Sum_probs=151.7

Q ss_pred             CCcccCC--CCchHHHHH----HHHHhHhCCCe----EEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchH------
Q 019543           46 PYDYTRS--GNPTRDALE----SLLAKLDKADR----ALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD------  107 (339)
Q Consensus        46 ~~~y~r~--~~~~~~~le----~~la~~~g~~~----~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~------  107 (339)
                      +|..+|.  +++.+++||    +++++++|++.    +.++ +||++||.+ +.++++|||+|+++++.|++..      
T Consensus        85 G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~  164 (490)
T 2a7v_A           85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS  164 (490)
T ss_dssp             C------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC---------------
T ss_pred             CCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhh
Confidence            4455553  557778888    89999999986    5554 599999985 5569999999999887653210      


Q ss_pred             --------------------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCC
Q 019543          108 --------------------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPV  135 (339)
Q Consensus       108 --------------------------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~  135 (339)
                                                      ..+.                    ++|.++|++||++|++|++|+.|.
T Consensus       165 ~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~gl  244 (490)
T 2a7v_A          165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGL  244 (490)
T ss_dssp             ----------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHH
T ss_pred             cchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEcccccccc
Confidence                                            0000                    999999999999999999996543


Q ss_pred             -----CcCcccCCCeEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHHHHhc-CCCCChH-HHH
Q 019543          136 -----LSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAE-GSGLAPF-DCW  194 (339)
Q Consensus       136 -----~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~--------------~l~~~l~~~~~~~-~~~~~~~-~a~  194 (339)
                           ...++. ++|++++|+||+|+|+   .||+++++++              ++.++++...... ..+.++. .++
T Consensus       245 v~~g~~~~~~~-~aDiv~~S~hK~l~Gp---~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaA  320 (490)
T 2a7v_A          245 VAAKVIPSPFK-HADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAA  320 (490)
T ss_dssp             HHTTSSCCGGG-TCSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHH
T ss_pred             ccCCcCCCCCC-CCCEEEECCcccCccc---cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHH
Confidence                 233443 6899999999999865   4799998864              2455555443211 1122222 222


Q ss_pred             H--HHh-ch-hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHH
Q 019543          195 I--CLR-GV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVV  269 (339)
Q Consensus       195 ~--~~~-~l-~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~  269 (339)
                      +  ++. .+ +.++++.++..+|++++++.|++. +++.+. +               ...++++++.+.+.. ...++.
T Consensus       321 la~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~-~---------------~t~t~lv~vdl~~~g~~~~~~~  383 (490)
T 2a7v_A          321 VAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVS-G---------------GTDNHLVLVDLRPKGLDGARAE  383 (490)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG-G---------------SCSSSEEEEECTTTTCCHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-CcEEec-C---------------CCCCeEEEEEeCCCCCCHHHHH
Confidence            2  122 12 345678888899999999999886 443221 1               113578888875321 344566


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALR  335 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg--------~e~~~~li~~l~~al~  335 (339)
                      +.|++.||.++.+... ....|                 ..++.|||+..        .+|.+.+++.|.++++
T Consensus       384 ~~L~~~GI~v~~~~~p-~d~~p-----------------~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          384 RVLELVSITANKNTCP-GDRSA-----------------ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHTTEECEEECCT-TCCCS-----------------SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEecCccC-CCCCC-----------------CCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            6677778888754210 00011                 13467999763        3556666666666654

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.83  E-value=5.4e-20  Score=172.55  Aligned_cols=259  Identities=15%  Similarity=0.098  Sum_probs=162.0

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc----CCCCEEEEcCCCccchHHHHH--------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL----GTGEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll----~~GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      |.+++...+..+++++++++++|.+  ++++++||++|+.+++ .+.    +|||+|+++++.|++....+.        
T Consensus        35 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~  114 (382)
T 4hvk_A           35 HSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFE  114 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCE
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCE
Confidence            4455555678889999999999975  4777888899997644 455    899999999988876543211        


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-ccCCCeEE
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIV  147 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-~~~~~Di~  147 (339)
                                                                 ++|.++|++||+ +++|++|+.+..... ...++|++
T Consensus       115 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~  193 (382)
T 4hvk_A          115 VEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGADML  193 (382)
T ss_dssp             EEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEE
T ss_pred             EEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEE
Confidence                                                       999999999999 999999987754322 23478999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHH
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQK  216 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~  216 (339)
                      ++|+||++|+.|   .|+++++++.   .++...       .......+....+.+...+    +.++...++..+++++
T Consensus       194 ~~s~~K~~g~~g---~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~  267 (382)
T 4hvk_A          194 TISSNDIYGPKG---VGALWIRKEA---KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDR  267 (382)
T ss_dssp             EEESGGGTSCTT---CEEEEEETTC---CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeHHHhcCCCc---eEEEEEcCcc---CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999876443   3555555432   111110       0112233443333222222    2345667777888999


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.+.|+++++++.. .|.  .           ...++++.|.+.+. ...++.+.|...|+.++.|..++.....     
T Consensus       268 l~~~L~~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~~-----  327 (382)
T 4hvk_A          268 IIDNVLKIEESYLN-GHP--E-----------KRLPNNVNVRFSYI-EGESIVLSLDMAGIQASTGSACSSKTLQ-----  327 (382)
T ss_dssp             HHHHHTTSTTEEEC-SCS--S-----------SBCTTEEEEEETTC-CHHHHHHHHHHTTCBCBCC--------C-----
T ss_pred             HHHHHhcCCCeEEe-CCc--c-----------ccCCCEEEEEECCC-CHHHHHHHHHHCCEEEeeCCccCCCCCc-----
Confidence            99999988876532 221  0           11245788877532 2456777787789998887543321110     


Q ss_pred             CCCCHHHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          297 ASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       297 ~~~~~~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                         +......+|++    ++.||||++..++++.++.+.++|+
T Consensus       328 ---~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~  367 (382)
T 4hvk_A          328 ---PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP  367 (382)
T ss_dssp             ---CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ---chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence               11122334443    5789999996655555555554443

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.83  E-value=4e-20  Score=173.43  Aligned_cols=247  Identities=15%  Similarity=0.120  Sum_probs=160.3

Q ss_pred             ccCCCCchHHHHHHH-HHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH----------------
Q 019543           49 YTRSGNPTRDALESL-LAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL----------------  110 (339)
Q Consensus        49 y~r~~~~~~~~le~~-la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~----------------  110 (339)
                      +++...+..+++++. +++++|.+.++++++|++|+.+++ .+++|||+|+++++.|++....+                
T Consensus        47 ~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  126 (371)
T 2e7j_A           47 LDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP  126 (371)
T ss_dssp             ------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC
Confidence            334456789999999 999999885555556689998644 57899999999998775432111                


Q ss_pred             -------------------H--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEec
Q 019543          111 -------------------S--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHS  150 (339)
Q Consensus       111 -------------------~--------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S  150 (339)
                                         .                    ++|.++|++||+++|+|++|+.+... .....+.|++++|
T Consensus       127 ~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s  206 (371)
T 2e7j_A          127 DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGS  206 (371)
T ss_dssp             TCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEE
T ss_pred             CCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEec
Confidence                               1                    99999999999999999999887642 2233468999999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHH-HHHHHH--hc-----CCCCChHHHHHHHhchhhHH-HHHHHH--HHHHHHHHH
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQN--AE-----GSGLAPFDCWICLRGVKTMA-LRVEKQ--QDNAQKIAE  219 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~-l~~~~~--~~-----~~~~~~~~a~~~~~~l~~~~-~r~~~~--~~~a~~l~~  219 (339)
                      +||+++++.  .+|++++++ ++++. ++....  ..     ....++...+.+...++.+. ...++.  .++++++.+
T Consensus       207 ~sK~~~~~~--~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~  283 (371)
T 2e7j_A          207 GHKSMAASG--PIGVMGMKE-EWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAA  283 (371)
T ss_dssp             HHHHSSCCS--SCEEEEECT-TTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred             CCcCCCCCC--CcEEEEEec-hhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998753  468888876 45555 543322  11     23344544444444444443 345555  678889999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|+++ +++.+ .|.              .+.+++++|.++   ...++.+.|...|+.+.. .      .+..      
T Consensus       284 ~L~~~-~~~~~-~~~--------------~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~-~------~~~~------  331 (371)
T 2e7j_A          284 EMEKL-GIKQL-GDN--------------PHNHDLMFFHAE---VLYEISKKAKGGRFFLYR-E------LKSR------  331 (371)
T ss_dssp             HHHHT-TCEEE-SSS--------------SCCSSEEEEECH---HHHHHHHHSSSGGGHHHH-H------HHHT------
T ss_pred             HHHHc-CcEEe-cCC--------------CccCceEEEECC---CHHHHHHHHHHCCEEEEe-c------cccc------
Confidence            99877 55432 221              113678888875   456788888877776542 1      0000      


Q ss_pred             CHHHHHhCCCCCCeEE-EEeccC-CHHHHHHHHHHHHh
Q 019543          300 PVEVRQARGLTEDLVR-ISVGIE-DVNDLISDLDKALR  335 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lR-isvg~e-~~~~li~~l~~al~  335 (339)
                      .     ..|..++.+| +|++.. .+++.++.+.++|+
T Consensus       332 ~-----~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~  364 (371)
T 2e7j_A          332 K-----IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFK  364 (371)
T ss_dssp             T-----EECSCTTCCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred             c-----ccCCCCCceEEEEeeccCCCHHHHHHHHHHHH
Confidence            0     0023357899 999976 55555566555554

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.83  E-value=2.6e-19  Score=168.36  Aligned_cols=238  Identities=12%  Similarity=0.046  Sum_probs=157.7

Q ss_pred             CchHHHHHHHHHhHhCCCe----EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccch--HHHHH---------------
Q 019543           54 NPTRDALESLLAKLDKADR----ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGT--DRLLS---------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~----~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~--~~~~~---------------  111 (339)
                      .+..+++++++++++|.+.    +++++||++|+. ++ .+++|||+|+++++.|.+.  ..+..               
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  112 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGD  112 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCCC
Confidence            4578899999999999764    788888999999 55 4789999999999888652  22111               


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-cccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-PLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++|+|++|+.+.... ....+.|++++|+||+++
T Consensus       113 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~  192 (384)
T 3zrp_A          113 YVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALG  192 (384)
T ss_dssp             CCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTC
T ss_pred             CCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccccc
Confidence                                              999999999999999999998775432 234578999999999997


Q ss_pred             cCCCceEEEEEEcChhHHHHH-------------HHHHH---h----cC---CCCChHHHHHHHhchhh-----HHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKEL-------------YFLQN---A----EG---SGLAPFDCWICLRGVKT-----MALRVE  208 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l-------------~~~~~---~----~~---~~~~~~~a~~~~~~l~~-----~~~r~~  208 (339)
                      |+.+  .|++++++ ++++.+             ..+..   .    .+   ...+....+.+...++.     ++...+
T Consensus       193 ~~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~  269 (384)
T 3zrp_A          193 SAAG--LGLLLLSP-KALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIK  269 (384)
T ss_dssp             CCSS--EEEEEECH-HHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCCc--eEEEEECH-HHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            6533  57887765 566665             32221   1    11   13344333322222322     456677


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccce
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      +..++++++.+.|+++ +++. ..|    .+.        ...+.+++|.+.+ ....++.+.|...|+.++.|..    
T Consensus       270 ~~~~~~~~l~~~L~~~-g~~~-~~~----~~~--------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~----  330 (384)
T 3zrp_A          270 RHTMVASAIRAGLEAL-GLEI-VAR----RPE--------SYSNTVTGVILKV-ADPQKVLAGTVNEGVEFAPGVH----  330 (384)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCB-SCS----SGG--------GBCSSEEEEECSS-SCHHHHHHHHHTTTCCCEECCC----
T ss_pred             HHHHHHHHHHHHHHHC-CCeE-ccC----ccc--------ccCccEEEEECCC-CCHHHHHHHHHHCCEEEecCCC----
Confidence            7778889999999887 5432 111    000        1135677888865 3456777777777887765431    


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                       .+                  . +.+|||++...+++.++.+.++|
T Consensus       331 -~~------------------~-~~iRi~~~~~~~~e~i~~~~~~l  356 (384)
T 3zrp_A          331 -PA------------------F-KYFRIGHMGWVTPNDAIIAISVI  356 (384)
T ss_dssp             -TT------------------C-CEEEEECCSSCCHHHHHHHHHHH
T ss_pred             -CC------------------c-CEEEEeccccCCHHHHHHHHHHH
Confidence             00                  1 67999998655444444444444

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.83  E-value=5.5e-19  Score=166.42  Aligned_cols=238  Identities=15%  Similarity=0.041  Sum_probs=160.6

Q ss_pred             chHHHHHHHHHhHh----CC----C-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD----KA----D-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g~----~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +...+|++.+++++    |.    + +++++++|++|+.+++ .+++|||+|+++++.|++....+.             
T Consensus        63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~  142 (376)
T 2dou_A           63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLRE  142 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCC
Confidence            35778999999887    75    3 6777888899997544 578899999999998877654322             


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Cccc----CCCe
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPLE----LGAD  145 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~~----~~~D  145 (339)
                                                            ++|+++|++||+++|+|++|+.+...    ....    .+.+
T Consensus       143 ~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~  222 (376)
T 2dou_A          143 DGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERV  222 (376)
T ss_dssp             TSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTE
T ss_pred             CCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcE
Confidence                                                  78999999999999999999764321    1122    2457


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L  221 (339)
                      ++++|+||+++.+| ...|+++++ +++++.++......+...++...+.+...|+.    ++...++..++.+++.+.|
T Consensus       223 i~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  300 (376)
T 2dou_A          223 VELFSLSKSYNLAG-FRLGFALGS-EEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEAL  300 (376)
T ss_dssp             EEEEEHHHHHTCGG-GCCEEEEEC-HHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcCChh-heeEEEecC-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998655 446788776 47888887766655555666655544444433    4555666778888899999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      +++  +. +..|                ..+.++++.+.+.....++.+.|...|+.++.|..+.    +          
T Consensus       301 ~~~--~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~----~----------  347 (376)
T 2dou_A          301 KGV--LS-LLPP----------------RATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFG----P----------  347 (376)
T ss_dssp             TTT--SE-ECCC----------------CBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGC----G----------
T ss_pred             HHh--cC-ccCC----------------CeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhC----C----------
Confidence            876  32 2111                1234577777533234567777766688877654321    0          


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             -.++.+|||++.  +++.++.+.++|++
T Consensus       348 -------~~~~~~Ris~~~--~~~~i~~~l~~l~~  373 (376)
T 2dou_A          348 -------GGKGFVRIALVR--PLEELLEAAKRIRE  373 (376)
T ss_dssp             -------GGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             -------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence                   024689999986  34444555555543

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.83  E-value=3.7e-19  Score=167.25  Aligned_cols=233  Identities=12%  Similarity=0.109  Sum_probs=159.4

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...+|++.++++++        .+++++++||++|+.+++ .+++|||+|+++++.|++....+.               
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~d~~~  146 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCDFTVES  146 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeCCCHHH
Confidence            46678888888764        257889999999998654 478999999999999987654322               


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---ccc----CCCeEEEeccccccc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PLE----LGADIVMHSATKFIA  156 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~~----~~~Di~~~S~sK~l~  156 (339)
                                                 + |.++|++||+++|+|++|+.+... .   ...    .+.|++++|+||+++
T Consensus       147 l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~  225 (370)
T 2z61_A          147 LEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA  225 (370)
T ss_dssp             HHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT
T ss_pred             HHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC
Confidence                                       6 999999999999999999865431 1   112    256899999999997


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-----HHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                      .+| ...|++++++ ++++.++......+...++...+.+...|+.     ++...++..++.+++.+.|+++ +++.+ 
T Consensus       226 ~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-  301 (370)
T 2z61_A          226 MTG-WRIGYVISND-EIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-GWEVN-  301 (370)
T ss_dssp             CGG-GCCEEEECCH-HHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCC-
T ss_pred             Ccc-ceEEEEEECH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-CCeec-
Confidence            555 4567888775 7888887766655566777766666666653     3445566677888888888876 44321 


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                      .|                ..+.++++.+.+  ...++.+.|. ..|+.++.|..+..   .                  .
T Consensus       302 ~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~f~~---~------------------~  342 (370)
T 2z61_A          302 NP----------------IGAYYVFPNIGE--DGREFAYKLLKEKFVALTPGIGFGS---K------------------G  342 (370)
T ss_dssp             CC----------------CBTTEECCBCSS--CHHHHHHHHHHHHCEECEEGGGGCG---G------------------G
T ss_pred             CC----------------CcceEEEEecCC--CHHHHHHHHHHhCCEEEeCchhhCC---C------------------C
Confidence            11                123455666654  3456777775 67888876643210   0                  2


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHH
Q 019543          311 EDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      ++.+|||++.  +++.++.+.++|
T Consensus       343 ~~~~Ri~~~~--~~~~i~~~~~~l  364 (370)
T 2z61_A          343 KNYIRISYAN--SYENIKEGLERI  364 (370)
T ss_dssp             SSBEEEECCS--CHHHHHHHHHHH
T ss_pred             CCEEEEEEeC--CHHHHHHHHHHH
Confidence            4679999993  333344444443

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.83  E-value=6.3e-19  Score=169.09  Aligned_cols=213  Identities=17%  Similarity=0.181  Sum_probs=154.4

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      .+...+||+.+++++|.+++++++||++|+.+++..+.+||+|+++++.|.+....+.                      
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~  130 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQ  130 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHH
Confidence            4778999999999999999999999999998766544689999999999887654332                      


Q ss_pred             ------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--CcccCCCeEEEeccc--cccccCCCceE
Q 019543          112 ------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RPLELGADIVMHSAT--KFIAGHSDVMA  163 (339)
Q Consensus       112 ------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~~~~~~Di~~~S~s--K~l~g~~~~~g  163 (339)
                                              ++|.++|++||+++|+|++|+.|...  ..+....|++++|||  |.+++   ..+
T Consensus       131 l~~~i~~~~~~v~~~~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~l~~---~~~  207 (424)
T 2po3_A          131 VAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVNA---FEG  207 (424)
T ss_dssp             HGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC---SSC
T ss_pred             HHHhhCcCCcEEEEECCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCCccC---CCC
Confidence                                    99999999999999999999865432  223323589999998  87775   357


Q ss_pred             EEEEEcChhHHHHHHHHHHhc------------CCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          164 GVLAVKGERLAKELYFLQNAE------------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       164 G~v~~~~~~l~~~l~~~~~~~------------~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                      |+++++++++++.++......            +..+++..+++++..++.++...+++.++++++.+.|+++++++.+.
T Consensus       208 G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~  287 (424)
T 2po3_A          208 GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVAD  287 (424)
T ss_dssp             EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred             eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence            899887557777777654321            12456777777776777777788888889999999999887764322


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCH---HHHHHHHccCCcceeeccc
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---ALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---~~~~~~~~~L~~~~i~v~~  281 (339)
                      .|.-            ......++++.+++.   ....++.+.|...|+.++.
T Consensus       288 ~~~~------------~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~  328 (424)
T 2po3_A          288 HDRH------------GLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRA  328 (424)
T ss_dssp             GGGG------------SCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBC
T ss_pred             CCCC------------CccccEEEEEEECCccchhhHHHHHHHHHHCCCceec
Confidence            1100            001125777777531   1245677777777887764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.83  E-value=4.9e-20  Score=171.51  Aligned_cols=235  Identities=17%  Similarity=0.155  Sum_probs=157.5

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH------------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD------------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~------------------------  107 (339)
                      .++...+||+++++++|.+++++++||++|+.+ +..+++|||+|+++++.|..+.                        
T Consensus        36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d  115 (347)
T 1jg8_A           36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD  115 (347)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEEC
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEecCCCCccC
Confidence            567889999999999999999999999999875 4457899999999988764311                        


Q ss_pred             -----HHH--------H-----------------------HHHHHHHHHcCCEEEEeCCcCCC------CCcCcccCCCe
Q 019543          108 -----RLL--------S-----------------------RKIAEMAHAHGALLLVDNSIMSP------VLSRPLELGAD  145 (339)
Q Consensus       108 -----~~~--------~-----------------------~~I~~la~~~g~~livD~a~a~g------~~~~~~~~~~D  145 (339)
                           ..+        +                       ++|+++|++||+++++|++|..+      .....+..++|
T Consensus       116 ~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d  195 (347)
T 1jg8_A          116 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYAD  195 (347)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCS
T ss_pred             HHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhccccc
Confidence                 010        1                       68999999999999999987432      11111223578


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhC
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      .++.|+||+++++   .||+++.+ ++++++++..+..++..+  +...++++..+++....++++..++++++.+.|++
T Consensus       196 ~~~~s~sK~l~~~---~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  271 (347)
T 1jg8_A          196 SVMFCLSKGLCAP---VGSVVVGD-RDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  271 (347)
T ss_dssp             EEEEESSSTTCCS---SCEEEEEC-HHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccccCCC---ceEEEEcC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999853   46666665 567787776665555433  44555555555554433455555677888888877


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      + ++. +..+               ...++++++.+++ .....+|.+.|...|+.++.+                    
T Consensus       272 ~-~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~--------------------  314 (347)
T 1jg8_A          272 I-GYS-VNPE---------------DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV--------------------  314 (347)
T ss_dssp             H-TCB-CCGG---------------GCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE--------------------
T ss_pred             c-Cce-eccC---------------CCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC--------------------
Confidence            6 443 1111               1145688888753 223567888887778776521                    


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                             .++.+|+|++...+++.++.+.++|+
T Consensus       315 -------~~~~iRl~~~~~~~~e~i~~~~~~l~  340 (347)
T 1jg8_A          315 -------SDTEIRLVTHKDVSRNDIEEALNIFE  340 (347)
T ss_dssp             -------ETTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             -------CCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence                   12569999976555555555555544

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.83  E-value=2.8e-20  Score=176.40  Aligned_cols=261  Identities=17%  Similarity=0.089  Sum_probs=155.8

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hc----CCCC-EEEEcCCCccchHHHHH-------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LL----GTGE-EIVAGDDLYGGTDRLLS-------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll----~~GD-~Vi~~~~~y~~~~~~~~-------  111 (339)
                      +.+++...+..+++++++++++|.+  .+++++||++|+.+++. ++    +||| +|+++++.|++....+.       
T Consensus        55 ~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~  134 (400)
T 3vax_A           55 HEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGF  134 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTC
T ss_pred             chhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCC
Confidence            3344444567899999999999975  68888888999986554 55    8999 99999887776532211       


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-cCCCeE
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADI  146 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~~~~Di  146 (339)
                                                                  ++|.++|++||++||+|++|+.+...... .. +|+
T Consensus       135 ~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~  213 (400)
T 3vax_A          135 EVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDM  213 (400)
T ss_dssp             EEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSE
T ss_pred             eEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcE
Confidence                                                        99999999999999999999877543222 23 899


Q ss_pred             EEeccccccccCCCceEEEEE-EcChhHH---HHHHHHH-------HhcCCCCChHHHHHHHhchh----hHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLA-VKGERLA---KELYFLQ-------NAEGSGLAPFDCWICLRGVK----TMALRVEKQQ  211 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~-~~~~~l~---~~l~~~~-------~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~  211 (339)
                      +++|+||.+++.+   .|+++ ++++.+.   ..+....       .......++...+.+...++    .++...++..
T Consensus       214 ~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  290 (400)
T 3vax_A          214 ISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQ  290 (400)
T ss_dssp             EEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             EEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999665332   35555 5552111   1111110       11123334443333323333    2455677777


Q ss_pred             HHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecc
Q 019543          212 DNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       212 ~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                      ++++++.+.|+ .++++.. .|.  .           ...+++++|.+.+. ...++.+.|. .|+.++.|..++....+
T Consensus       291 ~~~~~l~~~L~-~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~-~~~~l~~~L~-~gi~v~~g~~~~~~~~~  353 (400)
T 3vax_A          291 DLRSRLLAGLA-STSFQVN-GDQ--D-----------HVVPHILNLSFEDV-DAEAFLVTLK-DLVAVATGSASTSASFT  353 (400)
T ss_dssp             HHHHHHHHHHT-TTTCEEC-SCT--T-----------SBCTTEEEEECTTC-CHHHHHHHHH-HHHHHTTTTEEEEEEEC
T ss_pred             HHHHHHHHhhC-CCCEEEe-CCc--c-----------cCCCCEEEEEeCCC-CHHHHHHHHh-cCcEEEecccccCCCCC
Confidence            88889999998 7776432 121  0           11346888877542 3457788888 89999988654332111


Q ss_pred             ccccCCCCCHHHHHhCCCC----CCeEEEEe-ccCCHHHHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLT----EDLVRISV-GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~----~~~lRisv-g~e~~~~li~~l~~al~~  336 (339)
                      .        ......+|++    ++.||||+ +...+++.++.+.++|++
T Consensus       354 ~--------~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~  395 (400)
T 3vax_A          354 P--------SHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAK  395 (400)
T ss_dssp             C--------HHHHHTTTCCHHHHTSEEEEEEEEC----------------
T ss_pred             c--------cHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHH
Confidence            1        1222334544    48999999 876666666666666654

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.83  E-value=6.5e-19  Score=165.33  Aligned_cols=236  Identities=14%  Similarity=0.104  Sum_probs=160.7

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      .+...++++.+++++|.+  .++++++|++|+.+++..+ +||+|+++.+.|++....+.                    
T Consensus        58 ~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l  136 (364)
T 1lc5_A           58 DADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL-KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT  136 (364)
T ss_dssp             CTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC
T ss_pred             CCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchh
Confidence            345789999999999864  6777788899998766544 78999999988875432211                    


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c-Ccc----cCCCeEEEecccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S-RPL----ELGADIVMHSATK  153 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~-~~~----~~~~Di~~~S~sK  153 (339)
                                                      ++|+++|++||+++|+|++|+.+.. . ..+    ..+.+++++|+||
T Consensus       137 ~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  216 (364)
T 1lc5_A          137 DAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTK  216 (364)
T ss_dssp             TTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTT
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECch
Confidence                                            8899999999999999999975443 1 112    1356899999999


Q ss_pred             ccccCCCceEEEEE-EcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          154 FIAGHSDVMAGVLA-VKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       154 ~l~g~~~~~gG~v~-~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      +++.+| ...|+++ ++ +++++.++...  .....++...+.+...|+.   ++...++..++.+++.+.|+++|+++.
T Consensus       217 ~~~~~G-~r~G~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  292 (364)
T 1lc5_A          217 FYAIPG-LRLGYLVNSD-DAAMARMRRQQ--MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTV  292 (364)
T ss_dssp             TTTCTT-TCCEEEECCC-HHHHHHHHHHS--CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             hhcCCc-cceEEEEECC-HHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence            998655 4457887 55 57777776543  2445677766666666654   455666677888899999998877642


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                        +|.                .+.++++.+.+.  ..++.+.|...|+.++.|..+.    +                 .
T Consensus       293 --~~~----------------~g~~~~~~~~~~--~~~l~~~l~~~gi~v~~g~~~~----~-----------------~  331 (364)
T 1lc5_A          293 --YPG----------------RANYLLLRCERE--DIDLQRRLLTQRILIRSCANYP----G-----------------L  331 (364)
T ss_dssp             --CCC----------------SSSEEEEEESCT--TCCHHHHHHTTTEECEECTTST----T-----------------C
T ss_pred             --CCC----------------CCeEEEEECCCc--HHHHHHHHHHCCcEEeeCcccC----C-----------------C
Confidence              231                356777877532  2345666656688877654321    0                 1


Q ss_pred             CCCeEEEEeccC-CHHHHHHHHHHHHh
Q 019543          310 TEDLVRISVGIE-DVNDLISDLDKALR  335 (339)
Q Consensus       310 ~~~~lRisvg~e-~~~~li~~l~~al~  335 (339)
                      .++.+|||++.+ +.+.+++.|.+.++
T Consensus       332 ~~~~iRis~~~~~~~~~l~~~l~~~~~  358 (364)
T 1lc5_A          332 DSRYYRVAIRSAAQNERLLAALRNVLT  358 (364)
T ss_dssp             CTTEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            357899999852 23445555555444

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.82  E-value=3.6e-19  Score=166.91  Aligned_cols=231  Identities=12%  Similarity=0.110  Sum_probs=157.0

Q ss_pred             CchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH------------------H-
Q 019543           54 NPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL------------------S-  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~------------------~-  111 (339)
                      ++...+|++++++++|.  +++++++||++|+.+++ .+++|||+|+++.+.|.+....+                  . 
T Consensus        64 ~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~  143 (365)
T 3get_A           64 DDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEF  143 (365)
T ss_dssp             CTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCHHHH
T ss_pred             CCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCCCCH
Confidence            34447999999999994  57888899999998654 57899999999999886543211                  1 


Q ss_pred             -----------------------------HHHHHHHH--HcCCEEEEeCCcCCCC---C----cCcc----cCCCeEEEe
Q 019543          112 -----------------------------RKIAEMAH--AHGALLLVDNSIMSPV---L----SRPL----ELGADIVMH  149 (339)
Q Consensus       112 -----------------------------~~I~~la~--~~g~~livD~a~a~g~---~----~~~~----~~~~Di~~~  149 (339)
                                                   ++|.++++  ++|+++|+|++|+.+.   .    ....    ..+.+++++
T Consensus       144 ~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  223 (365)
T 3get_A          144 KKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLG  223 (365)
T ss_dssp             HHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEE
T ss_pred             HHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEe
Confidence                                         66667766  6799999999997333   1    1111    124579999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      |+||+++.+|. ..|+++++ +++.+.++.....  ...++...+.+...+   +.++.+.++..++.+++.+.|+++ +
T Consensus       224 s~sK~~~~~G~-r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-g  298 (365)
T 3get_A          224 TFSKLYGLGGL-RIGYGIAN-ANIISAFYKLRAP--FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH-N  298 (365)
T ss_dssp             ESSSTTSCTTT-CCEEEEEC-HHHHHHHHHHSCT--TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ecchHhcCcch-heEEEEcC-HHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence            99999986653 45777775 5777777665433  345666555444443   345667777888899999999887 5


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ++.  +|.                .+.++++.+.+. ...++.+.|...|+.++.|..+                     
T Consensus       299 ~~~--~~~----------------~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~---------------------  338 (365)
T 3get_A          299 IKI--IDS----------------YTNFITYFFDEK-NSTDLSEKLLKKGIIIRNLKSY---------------------  338 (365)
T ss_dssp             CEE--CCC----------------SSSEEEEECSSS-CHHHHHHHHHTTTEECEECGGG---------------------
T ss_pred             CEE--CCC----------------CCeEEEEECCCC-CHHHHHHHHHHCCEEEEECccC---------------------
Confidence            432  221                456788887543 4567777777778887765421                     


Q ss_pred             CCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          307 RGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                       |  ++.+|||++.   ++.++.+.++|+
T Consensus       339 -~--~~~iRis~~~---~~~i~~l~~~l~  361 (365)
T 3get_A          339 -G--LNAIRITIGT---SYENEKFFTEFD  361 (365)
T ss_dssp             -T--CSEEEEECCC---HHHHHHHHHHHH
T ss_pred             -C--CCEEEEEcCC---HHHHHHHHHHHH
Confidence             1  4789999983   333444444444

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.82  E-value=1.1e-19  Score=170.99  Aligned_cols=241  Identities=13%  Similarity=0.082  Sum_probs=153.9

Q ss_pred             HHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           58 DALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        58 ~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .++++.++++++        .+++++++||++|+.+++ .+++|||+|+++.+.|.+....+.                 
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~  140 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGGINL  140 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTSCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCCCCH
Confidence            345555555543        457889999999998644 578999999999998887653322                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cc-c---CCCeEEEec
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL-E---LGADIVMHS  150 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~-~---~~~Di~~~S  150 (339)
                                                      ++|+++|++||+++|+|++|+......     ++ .   .+.++++.|
T Consensus       141 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s  220 (377)
T 3fdb_A          141 HDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA  220 (377)
T ss_dssp             HHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred             HHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence                                            788888999999999999997643321     11 1   133599999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHHhC-CC
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFLAS-HP  225 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~-~~  225 (339)
                      +||++|.+| ...|++++.++++.+.++......+...++...+.+...++.    ++.+.++..++.+++.+.|++ +|
T Consensus       221 ~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  299 (377)
T 3fdb_A          221 PSKAWNIAG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIP  299 (377)
T ss_dssp             STTTTTCGG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ChHhccCcc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999997655 345676665567777777655444456677665554444443    456677778888899999987 67


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCCCHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                      ++..+ .|                ..+.++++.+.+.....++++.|. ..|+.++.|..+..                 
T Consensus       300 ~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------  345 (377)
T 3fdb_A          300 GAKIT-PM----------------QATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGE-----------------  345 (377)
T ss_dssp             TCEEC-CC----------------SBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCG-----------------
T ss_pred             CceEe-cC----------------CeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccC-----------------
Confidence            66421 12                123344676643211123444443 34888776643211                 


Q ss_pred             HhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhcC
Q 019543          305 QARGLTEDLVRISVGIE--DVNDLISDLDKALRTG  337 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~~  337 (339)
                          ..++.+|||++..  +.++.++.|.+++++.
T Consensus       346 ----~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~~  376 (377)
T 3fdb_A          346 ----DGTGFCRLNFATSREVLEEAIDRMAKAVSHH  376 (377)
T ss_dssp             ----GGTTEEEEECCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ----CCCCEEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence                0347899999962  2334455566666543

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.82  E-value=3.6e-19  Score=167.85  Aligned_cols=239  Identities=18%  Similarity=0.107  Sum_probs=166.7

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-h-cCCCCEEEEcCCCccchHHHH----H---------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-L-LGTGEEIVAGDDLYGGTDRLL----S---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-l-l~~GD~Vi~~~~~y~~~~~~~----~---------------  111 (339)
                      +..+++++.+++++|.+  ++++++||++|+.+++. + +++||+|+++++.|++....+    +               
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            56889999999999976  68888999999986554 6 789999999999998754211    1               


Q ss_pred             -----------------------------------HHHHHHHH----HcCCEEEEeCCcCCCCCcCcc-cCCCeEEEecc
Q 019543          112 -----------------------------------RKIAEMAH----AHGALLLVDNSIMSPVLSRPL-ELGADIVMHSA  151 (339)
Q Consensus       112 -----------------------------------~~I~~la~----~~g~~livD~a~a~g~~~~~~-~~~~Di~~~S~  151 (339)
                                                         ++|.++|+    +||+++|+|++|+.|.....+ ..+.|++++|+
T Consensus       139 ~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~  218 (390)
T 1elu_A          139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG  218 (390)
T ss_dssp             SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred             CccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccc
Confidence                                               99999999    999999999999876542212 34679999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHH----------------------HHhcCCCCChHHHH---HHHhchhh---H
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCW---ICLRGVKT---M  203 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~a~---~~~~~l~~---~  203 (339)
                      +|++.++.+  .|++++++ ++.+.++..                      ........++...+   .++..++.   +
T Consensus       219 ~K~~~~~~g--~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~  295 (390)
T 1elu_A          219 HKWFAGPAG--VGGLYIHG-DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  295 (390)
T ss_dssp             SSTTCCCTT--CEEEEECT-TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             cccccCCCc--eEEEEECH-HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            996654422  47888875 565554321                      11112233443322   22333323   5


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      +...++..++++++.+.|+++++++.+ .|.              .+.++++.|.+.......++.+.|...|+.++.|.
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~  360 (390)
T 1elu_A          296 EERYQAICQRSEFLWRGLNQLPHVHCL-ATS--------------APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA  360 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEES-CSS--------------CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcEEe-cCc--------------cccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC
Confidence            566777888899999999988776432 221              12567888887422234567777766677765432


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                                .++.+|||++...+++.++.+.++|+++
T Consensus       361 --------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          361 --------------------------DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             --------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             --------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence                                      1367999999888888899999999864

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.82  E-value=1.6e-18  Score=162.61  Aligned_cols=233  Identities=15%  Similarity=0.109  Sum_probs=159.9

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCC-CEEEEcCCCccchHHHHH------------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTG-EEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~G-D~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .+...+|++.+|+++|.+  ++++++++++|+.+++ .+++|| |+|+++.+.|++....+.                  
T Consensus        57 ~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d  136 (356)
T 1fg7_A           57 ECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLD  136 (356)
T ss_dssp             CSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred             CccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence            344789999999999864  5666666689997644 578899 999999998887654322                  


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcc----cCCCeEEEeccccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPL----ELGADIVMHSATKF  154 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~----~~~~Di~~~S~sK~  154 (339)
                                                      ++|+++|+ +|+++|+|++|+.... ....    ..+.++++.|+||+
T Consensus       137 ~~~l~~~i~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  215 (356)
T 1fg7_A          137 LQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKA  215 (356)
T ss_dssp             HHHHHTSCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSST
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHh
Confidence                                            56666677 9999999999975431 1111    13457999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-----HHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      ++.+|. ..|+++++ +++++.++..+.  .+..++...+.+...|+.     ++.+.++..++.+++.+.|++++++..
T Consensus       216 ~g~~G~-r~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~  291 (356)
T 1fg7_A          216 FALAGL-RCGFTLAN-EEVINLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQ  291 (356)
T ss_dssp             TCCGGG-CCEEEEEC-HHHHHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             hcCchh-hhEEEEeC-HHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence            986553 45788775 467777765432  235666665555554543     455566677888899999988875422


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc-CCcccceeccccccCCCCCHHHHHhCC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~-G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                       ..|.                .+..+++.++   ...++.+.|...|+.++. |..+                      |
T Consensus       292 -~~~~----------------~~~~~~~~~~---~~~~l~~~L~~~gI~v~~~g~~~----------------------~  329 (356)
T 1fg7_A          292 -VFDS----------------ETNYILARFK---ASSAVFKSLWDQGIILRDQNKQP----------------------S  329 (356)
T ss_dssp             -ECCC----------------SSSEEEEEET---THHHHHHHHHHTTEECEECTTST----------------------T
T ss_pred             -ECCC----------------CCeEEEEECC---CHHHHHHHHHHCCEEEEECCCCC----------------------C
Confidence             2332                3567788776   345677777777888775 4321                      1


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                       .++.+|||++.   ++.++.+.++|+++
T Consensus       330 -~~~~iRis~~~---~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          330 -LSGCLRITVGT---REESQRVIDALRAE  354 (356)
T ss_dssp             -CTTEEEEECCC---HHHHHHHHHHHHTC
T ss_pred             -CCCeEEEEeCC---HHHHHHHHHHHHhh
Confidence             13589999983   45677888888764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.82  E-value=3.8e-19  Score=168.22  Aligned_cols=242  Identities=14%  Similarity=0.123  Sum_probs=159.5

Q ss_pred             hHHHHHHHHHhHh----C----CCe-EEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           56 TRDALESLLAKLD----K----ADR-ALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~----g----~~~-~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ...+|++.+++++    |    .++ +++++||++|+.+++. ++++||+|+++++.|++....+.              
T Consensus        64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~  143 (389)
T 1gd9_A           64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEE  143 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGG
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCc
Confidence            3567777777776    6    356 8888899999986554 78999999999998877643222              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cc-c----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PL-E----LG  143 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~-~----~~  143 (339)
                                                             ++|+++|++||+++|+|++|+.+... .   .+ .    .+
T Consensus       144 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  223 (389)
T 1gd9_A          144 DEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFE  223 (389)
T ss_dssp             GTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred             cCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCC
Confidence                                                   88999999999999999999865432 1   11 1    24


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQKI  217 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~~a~~l  217 (339)
                      .|++++|+||+++.+| ...|+++++ +++++.++......+...++...+.+...|+.      ++...++..++.+++
T Consensus       224 ~~i~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l  301 (389)
T 1gd9_A          224 RTITVNGFSKTFAMTG-WRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLV  301 (389)
T ss_dssp             GEEEEEESTTTTTCGG-GCCEEEECC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecChhhcCCcc-cceEEEEEC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            6899999999998655 445788876 47778777665444455566554444444432      344566667888888


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCC-cceeecccCCcccceecccccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTK-YFSITVSFGSVKSLISMPCFMS  295 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~  295 (339)
                      .+.|+++ +++.+ .|                ..+.++++.+.+ .....++.+.|. ..|+.+..|..+.    +    
T Consensus       302 ~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~----  355 (389)
T 1gd9_A          302 WKRLNEM-GLPTV-KP----------------KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFG----K----  355 (389)
T ss_dssp             HHHHHHT-TCCCC-CC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGC----G----
T ss_pred             HHHHHHc-CCeec-CC----------------CeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC----C----
Confidence            8888876 44321 11                123345666632 123456777775 6788877654321    0    


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhcCC
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTGP  338 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~~~  338 (339)
                                   ..++.+|||++.  ++.++.++.|.+++++.+
T Consensus       356 -------------~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~~~  387 (389)
T 1gd9_A          356 -------------AGEGYVRISYATAYEKLEEAMDRMERVLKERK  387 (389)
T ss_dssp             -------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             -------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence                         024679999986  223344556666665543

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.82  E-value=2.6e-19  Score=167.07  Aligned_cols=235  Identities=11%  Similarity=0.086  Sum_probs=161.1

Q ss_pred             CCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           53 GNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .++...+|++++++++|.  +++++++||++|+.+++ .++++||+|+++.+.|.+....++                  
T Consensus        49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d  128 (354)
T 3ly1_A           49 AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFD  128 (354)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCC
T ss_pred             CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCC
Confidence            346778999999999995  57888888899998654 478999999999999887654332                  


Q ss_pred             --------------------------------HHHHHHHHH--cCCEEEEeCCcCCCCCcC----cc----cC-CCeEEE
Q 019543          112 --------------------------------RKIAEMAHA--HGALLLVDNSIMSPVLSR----PL----EL-GADIVM  148 (339)
Q Consensus       112 --------------------------------~~I~~la~~--~g~~livD~a~a~g~~~~----~~----~~-~~Di~~  148 (339)
                                                      ++|.++++.  ||+++|+|++|+......    ..    .. +.++++
T Consensus       129 ~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~  208 (354)
T 3ly1_A          129 IEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILL  208 (354)
T ss_dssp             HHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEE
T ss_pred             HHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEE
Confidence                                            566666666  999999999997543321    11    12 456999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +|+||+++.+| ...|+++++ +++.+.++.....  ...++...+.+...++   .+..+.++..++.+++.+.|+++ 
T Consensus       209 ~s~sK~~g~~G-~r~G~~~~~-~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-  283 (354)
T 3ly1_A          209 KTFSKIHAMAG-MRVGYAVAH-PTVIALMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL-  283 (354)
T ss_dssp             EESSSTTCCGG-GCCEEEECC-HHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             eeChhhccChh-hhheeeecC-HHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            99999997555 456788775 4677776654432  4556665554444443   35666777788888999988876 


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      ++..  +|                +.+.++++.+.+  ...++.+.|...|+.++ |.+.     .              
T Consensus       284 ~~~~--~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~-g~~~-----~--------------  323 (354)
T 3ly1_A          284 KLPY--LP----------------SEGNFVFHQLVV--PLKDYQTHMADAGVLIG-RAFP-----P--------------  323 (354)
T ss_dssp             TCCB--CC----------------CCSSEEEEECSS--CHHHHHHHHHHTTEECC-CCCT-----T--------------
T ss_pred             CCeE--CC----------------CCceEEEEECCC--CHHHHHHHHHHCCEEEe-ecCC-----C--------------
Confidence            3321  12                145678888764  34567777777788887 5421     0              


Q ss_pred             hCCCCCCeEEEEeccC-CHHHHHHHHHHHHhc
Q 019543          306 ARGLTEDLVRISVGIE-DVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e-~~~~li~~l~~al~~  336 (339)
                          .++.+|||++.+ +.+.+++.|.+++++
T Consensus       324 ----~~~~iRis~~~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          324 ----ADNWCRISLGTPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             ----CTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             ----CCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence                347899999842 345556666666554

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.82  E-value=1.2e-18  Score=166.17  Aligned_cols=240  Identities=13%  Similarity=0.064  Sum_probs=159.7

Q ss_pred             chHHHHHHHHHhHh----CC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD----KA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +...+|++.+++++    |.     +.++++++|++|+.+++ .+++|||+|+++.+.|++....+.             
T Consensus        85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~  164 (404)
T 2o1b_A           85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP  164 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc
Confidence            34677888888877    74     36777778899998644 578999999999998887654332             


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cccC----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PLEL----GA  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~~~----~~  144 (339)
                                                             ++|+++|++||++||+|++|+.+... .   ....    +.
T Consensus       165 ~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  244 (404)
T 2o1b_A          165 PHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDV  244 (404)
T ss_dssp             TTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHH
T ss_pred             ccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCC
Confidence                                                   78999999999999999999865431 1   1222    34


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~  220 (339)
                      +++++|+||+++.+| ...|+++++ +++++.++......+...++...+.+...|+.    ++...++..++.+++.+.
T Consensus       245 ~i~~~s~sK~~g~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  322 (404)
T 2o1b_A          245 AIEIYSLSKGYNMSG-FRVGFAVGN-KDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAM  322 (404)
T ss_dssp             EEEEEESTTTTTCGG-GCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecchhccCch-hheEeEecC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999998655 446788776 47888887766655556676665555444443    455566677788889899


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      |+++ +++. ..|                ..+.++++.+.+.....++++.|. ..|+.++.|..+..            
T Consensus       323 L~~~-g~~~-~~~----------------~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~------------  372 (404)
T 2o1b_A          323 LAKA-DLPF-VHA----------------KGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGE------------  372 (404)
T ss_dssp             HHHT-TCCE-ECC----------------CBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCG------------
T ss_pred             HHhc-CCee-cCC----------------CcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCc------------
Confidence            9876 4432 212                023347777753323456777654 56888876643210            


Q ss_pred             CHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          300 PVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                               ..++.+|||++..  +.++.++.|.++++
T Consensus       373 ---------~~~~~iRis~~~~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          373 ---------NGNRYVRISLALDDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             ---------GGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred             ---------CCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                     0246899999962  23333444444443

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.82  E-value=1.3e-18  Score=166.11  Aligned_cols=241  Identities=11%  Similarity=0.031  Sum_probs=159.7

Q ss_pred             chHHHHHHHHHhHh----CC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD----KA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +...+|++.+++++    |.     +++++++||++|+.+++ .+++|||+|+++++.|++....+.             
T Consensus        75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T 2x5d_A           75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVP  154 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECST
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCC
Confidence            34678888888877    63     47888999999998654 478999999999998876543221             


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---c-cc----C
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---P-LE----L  142 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~-~~----~  142 (339)
                                                              ++|+++|++||+++|+|++|+.+.+ +.   . ..    .
T Consensus       155 ~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  234 (412)
T 2x5d_A          155 GIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAK  234 (412)
T ss_dssp             TSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGG
T ss_pred             ccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCcc
Confidence                                                    7899999999999999999986543 11   1 11    2


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIA  218 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~  218 (339)
                      +.|++++|+||+++.+|. ..|+++++ +++++.+.......+...++...+.+...|+.    ++...++..++.+++.
T Consensus       235 ~~~i~~~s~sK~~~~~G~-r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  312 (412)
T 2x5d_A          235 DIAVEFFTLSKSYNMAGW-RIGFMVGN-PELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLV  312 (412)
T ss_dssp             GTEEEEEECC-CCSCTTS-CCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCccccCCccc-ceEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            568999999999986553 45788776 47888887766555566676655544444432    4556666778888888


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH---HHHHHHccCC-cceeecccCCcccceeccccc
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETTK-YFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~---~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +.|+++ ++..  ++.               ..+.++++.++...   ...++++.|. ..|+.++.|..+.    +   
T Consensus       313 ~~L~~~-g~~~--~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~----~---  367 (412)
T 2x5d_A          313 KGLREA-GWMV--ENP---------------KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFG----D---  367 (412)
T ss_dssp             HHHHHH-TCCC--CCC---------------SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGC----G---
T ss_pred             HHHHHC-CCEe--cCC---------------CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhC----C---
Confidence            888875 3321  110               02346777774321   3456777774 4688887664321    0   


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~  336 (339)
                                    ..++.+|||++..  +.++.++.|.+++++
T Consensus       368 --------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~~  397 (412)
T 2x5d_A          368 --------------YGDDHVRFALIENRDRLRQAVRGIKAMFRA  397 (412)
T ss_dssp             --------------GGTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence                          0247899999972  223334555555543

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.82  E-value=1.4e-18  Score=168.15  Aligned_cols=241  Identities=14%  Similarity=0.120  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHhHh----CC---CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH-----------------
Q 019543           56 TRDALESLLAKLD----KA---DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL-----------------  110 (339)
Q Consensus        56 ~~~~le~~la~~~----g~---~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~-----------------  110 (339)
                      ...+|++.+++++    |.   ++++++++|++|+..++ .+++|||+|+++.+.|.+....+                 
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~  198 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGM  198 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCCC
Confidence            4567888888877    75   57778888899998654 47899999999999886543111                 


Q ss_pred             -----------------H-----------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cc-c---C
Q 019543          111 -----------------S-----------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PL-E---L  142 (339)
Q Consensus       111 -----------------~-----------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~-~---~  142 (339)
                                       +                       ++|+++|++||++||+|++|+.+.+. .   .+ .   .
T Consensus       199 d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~  278 (448)
T 3aow_A          199 KVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE  278 (448)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred             CHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence                             1                       78999999999999999999865431 1   11 1   2


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQDNAQK  216 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~~a~~  216 (339)
                      +.++++.||||+++ +| ...|+++++ +++++.+...........+++..+++...|+.      +....++..++.++
T Consensus       279 ~~vi~~~S~SK~~~-~G-lriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~  355 (448)
T 3aow_A          279 GRVIYLGTFSKILA-PG-FRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDA  355 (448)
T ss_dssp             SCEEEEEESTTTTC-GG-GCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEccchhhcc-cc-ccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            45799999999998 55 456788887 47888887665443344466555444444432      34445556677888


Q ss_pred             HHHHHhC-CC-CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          217 IAEFLAS-HP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       217 l~~~L~~-~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      +.+.|++ .| +++. ..|                ..|..+++.+.+.....++++.|...|+.+..|..+.    +.  
T Consensus       356 l~~~L~~~~~~g~~~-~~p----------------~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~----~~--  412 (448)
T 3aow_A          356 MLEALEEFMPEGVKW-TKP----------------EGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFY----AH--  412 (448)
T ss_dssp             HHHHHHHHCCTTCEE-CCC----------------SBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGS----TT--
T ss_pred             HHHHHHHhCCCCeEE-eCC----------------CccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhc----CC--
Confidence            8888876 45 4542 222                1355778887532234567777766688877664321    10  


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHh
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  335 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~  335 (339)
                                   +..++.+|||++..   +.++.++.|.++++
T Consensus       413 -------------~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~  443 (448)
T 3aow_A          413 -------------RDVKNTMRLNFTYVDEDKIMEGIKRLAETIK  443 (448)
T ss_dssp             -------------CCCCSEEEEECSSSCTHHHHHHHHHHHHHHH
T ss_pred             -------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence                         01347899999863   34555666666654

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.82  E-value=3.5e-18  Score=161.79  Aligned_cols=242  Identities=14%  Similarity=0.103  Sum_probs=158.9

Q ss_pred             chHHHHHHHHHhHhC-----CC-eEEEcCcHHHHHHHHH-HhcCCC-----CEEEEcCCCccchHHHHH-----------
Q 019543           55 PTRDALESLLAKLDK-----AD-RALCFTSGMAALAAVT-HLLGTG-----EEIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g-----~~-~~l~~~sG~~A~~~il-~ll~~G-----D~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      +.++++.+.+++.+|     .+ +++++++|++|+.+++ .++++|     |+|+++.+.|++....+.           
T Consensus        70 ~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~  149 (396)
T 3jtx_A           70 ELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC  149 (396)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec
Confidence            344555555555545     44 7888888899998654 578897     799999999887654432           


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc--------
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL--------  140 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~--------  140 (339)
                                                               ++|+++|++||+++|+|++|+......  +.        
T Consensus       150 ~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  229 (396)
T 3jtx_A          150 PAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQ  229 (396)
T ss_dssp             CTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHH
T ss_pred             CCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhh
Confidence                                                     679999999999999999997644321  11        


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNA  214 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a  214 (339)
                         ..+.++++.|+||.++.+| ...|+++++ +++.+.+.......+...++...+++...+   +.+..+.++..++.
T Consensus       230 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  307 (396)
T 3jtx_A          230 LGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGD-AELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKF  307 (396)
T ss_dssp             TTCCCTTEEEEEESTTTSSCGG-GCCEEEEEC-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cccccCcEEEEeccccccCCcc-cceEEEEeC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               1456799999999987665 445678775 478888887776666777776655544444   34566667777888


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceecccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~  293 (339)
                      +++.+.|+.+..   +..|                ..+.++++.+.+ ....++++.| +..|+.++.|..+..-     
T Consensus       308 ~~l~~~l~~~~~---~~~~----------------~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~-----  362 (396)
T 3jtx_A          308 ERVIPILQQVFD---VKLP----------------DASFYIWLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARD-----  362 (396)
T ss_dssp             HHHHHHHTTTSC---CCCC----------------SSSSEEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCC-----
T ss_pred             HHHHHHHHhcCC---ccCC----------------CeeEEEEEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCc-----
Confidence            888888876521   1111                135577787754 2345666666 4568988877543221     


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                       .+..         +..++.+|||++.  +++.++.+.++|+
T Consensus       363 -~~~~---------~~~~~~iRis~~~--~~~~i~~~l~~l~  392 (396)
T 3jtx_A          363 -TEQG---------NPGEGYVRIALVA--DVATCVKAAEDIV  392 (396)
T ss_dssp             -CTTC---------CTTTTEEEEECCS--CHHHHHHHHHHHH
T ss_pred             -cccc---------CCCCCeEEEEEcC--CHHHHHHHHHHHH
Confidence             0100         1245789999987  3343444444443

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.82  E-value=7e-19  Score=164.14  Aligned_cols=238  Identities=14%  Similarity=0.114  Sum_probs=162.1

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++...+|++++++++|.+  +++++++|++|+.+++..+. ||+|+++.+.|.+....++                   
T Consensus        48 ~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~  126 (350)
T 3fkd_A           48 PEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEAD  126 (350)
T ss_dssp             CCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSC
T ss_pred             CCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCc
Confidence            3444579999999999864  67788888999987665444 9999999999987765443                   


Q ss_pred             ----------------------HHHHHHHHHcC-CEEEEeCCcCCCCCcCc-----c-cCCCeEEEeccccccccCCCce
Q 019543          112 ----------------------RKIAEMAHAHG-ALLLVDNSIMSPVLSRP-----L-ELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 ----------------------~~I~~la~~~g-~~livD~a~a~g~~~~~-----~-~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                            ++|.++++.++ .+||+|++|+.......     . ..+.+++++|+||+++.+| ..
T Consensus       127 ~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r  205 (350)
T 3fkd_A          127 FSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPG-LR  205 (350)
T ss_dssp             CTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGG-GC
T ss_pred             cCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcc-hh
Confidence                                  77888888876 79999999975433211     1 2244699999999998655 45


Q ss_pred             EEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCC
Q 019543          163 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  239 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~  239 (339)
                      .|+++++ +++.+.++....  ....++...+++...|+.   +.+++++..++.+++.+.|+++|++..  +|.     
T Consensus       206 ~G~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~-----  275 (350)
T 3fkd_A          206 IGYIVAN-KDFMKRVAAFST--PWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEV--HPS-----  275 (350)
T ss_dssp             CEEEECC-HHHHHHHHTTCC--TTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEE--CCC-----
T ss_pred             eEeEEeC-HHHHHHHHHhCC--CCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE--CCC-----
Confidence            6788774 577777665432  345666665555444443   334455555888899999988877653  231     


Q ss_pred             chHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          240 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       240 ~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                                 .+..+++.++.. ...++.+.|.. .|+.++.|..+.    +                 ..++.+|||+
T Consensus       276 -----------~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~~g~~f~----~-----------------~~~~~iRis~  322 (350)
T 3fkd_A          276 -----------GTTFFLLRLKKG-TAAELKKYMLEEYNMLIRDASNFR----G-----------------LDESYVRITT  322 (350)
T ss_dssp             -----------SSSEEEEEESSS-CHHHHHHHHHHTTCEECEECTTST----T-----------------CCTTEEEEEC
T ss_pred             -----------CCcEEEEECCCC-CHHHHHHHHHHHCCEEEEeCccCC----C-----------------CCCCEEEEEc
Confidence                       456777777543 45678888876 899888775321    0                 2457899999


Q ss_pred             ccCC-HHHHHHHHHHHHh
Q 019543          319 GIED-VNDLISDLDKALR  335 (339)
Q Consensus       319 g~e~-~~~li~~l~~al~  335 (339)
                      +.++ .+.+++.|.+.++
T Consensus       323 ~~~~~~~~l~~al~~~~~  340 (350)
T 3fkd_A          323 QRPAQNQLFIKALETFLE  340 (350)
T ss_dssp             CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            9533 3455555555443

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.82  E-value=8.9e-19  Score=165.57  Aligned_cols=208  Identities=14%  Similarity=0.117  Sum_probs=139.7

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..++++.+++++    |    .+++++++||++|+.+++ .+++|||+|+++++.|++....++                
T Consensus        69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  148 (388)
T 1j32_A           69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQ  148 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGT
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccC
Confidence            556777777665    3    246777888899998654 478999999999998876543322                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C----ccc-----CCC
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R----PLE-----LGA  144 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~----~~~-----~~~  144 (339)
                                                           ++|+++|++||+++|+|++|+.+... .    ...     .+.
T Consensus       149 ~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~  228 (388)
T 1j32_A          149 FKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYER  228 (388)
T ss_dssp             TCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHT
T ss_pred             CCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCC
Confidence                                                 89999999999999999999765431 1    111     346


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~  220 (339)
                      |+++.|+||+++.+| ...|++++++ ++.+.++......+...++...+.+...|+    .++...++..++.+++.+.
T Consensus       229 ~~~~~s~sK~~~~~G-~r~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  306 (388)
T 1j32_A          229 SVVCSGFAKTYAMTG-WRVGFLAGPV-PLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDA  306 (388)
T ss_dssp             EEEEEESTTTTTCTT-TCCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeechhccCCcc-cceEEEEeCH-HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            899999999997665 3457887764 677877776655455666665544433333    3556677777888999999


Q ss_pred             HhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCc-ceeecccCC
Q 019543          221 LASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY-FSITVSFGS  283 (339)
Q Consensus       221 L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~-~~i~v~~G~  283 (339)
                      |+++++++.+ .|                ..+.++++.+.. .....++.+.|.. .|+.++.|.
T Consensus       307 L~~~~g~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~  354 (388)
T 1j32_A          307 LNAMPGLECP-KP----------------DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGA  354 (388)
T ss_dssp             HHTCTTCBCC-CC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGG
T ss_pred             HhhCCCCccc-CC----------------CeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChh
Confidence            9988765421 11                012334444431 1134567777754 688877553

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.81  E-value=9.1e-19  Score=168.11  Aligned_cols=244  Identities=16%  Similarity=0.104  Sum_probs=160.8

Q ss_pred             HHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-Hhc--CCCC--EEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLL--GTGE--EIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll--~~GD--~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..++++.++++++        .++++++++|++|+.+++ .++  ++||  +|+++.+.|.+....+.            
T Consensus        84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~  163 (437)
T 3g0t_A           84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF  163 (437)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec
Confidence            4788888888876        457888888899998655 477  9999  99999998876543222            


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc--------
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL--------  140 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~--------  140 (339)
                                                               ++|+++|++||++||+|++|+...+..  +.        
T Consensus       164 ~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  243 (437)
T 3g0t_A          164 EYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQP  243 (437)
T ss_dssp             GGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCC
T ss_pred             CCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhh
Confidence                                                     778999999999999999997543321  11        


Q ss_pred             ----cCCCeEEEeccccccccCCCceEEEEEEcChhHHH-H-----------------HHHHHHhcCCCCChHHHHHHHh
Q 019543          141 ----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK-E-----------------LYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       141 ----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~-~-----------------l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                          ..+.+++++|+||.++.+| ...|++++++ ++++ .                 +...........++...+++..
T Consensus       244 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  321 (437)
T 3g0t_A          244 SVANYTDNYILALSSSKAFSYAG-QRIGVLMISG-KLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAA  321 (437)
T ss_dssp             CGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECH-HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHH
T ss_pred             ccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECH-HHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHH
Confidence                1345699999999998655 4467888764 6776 6                 6555544455666666555544


Q ss_pred             chhh-------HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHcc
Q 019543          199 GVKT-------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET  271 (339)
Q Consensus       199 ~l~~-------~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~  271 (339)
                      .|+.       ++.+.++..++.+++.+.|+++ ++..+ +|.-...|         ...+.++++.+.+ ....++.+.
T Consensus       322 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~---------~~~~~~~~~~~~~-~~~~~l~~~  389 (437)
T 3g0t_A          322 MLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIV-YDKDGNEP---------LADGFYFTVGYKG-MDSSKLIEK  389 (437)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEES-SCEETTEE---------CCSSSEEEEEETT-CCHHHHHHH
T ss_pred             HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEe-ccccCCCC---------CceeEEEEEecCC-CCHHHHHHH
Confidence            4433       5566777888899999999987 55432 10000000         0145677777752 234567777


Q ss_pred             CCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Q 019543          272 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALR  335 (339)
Q Consensus       272 L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~---e~~~~li~~l~~al~  335 (339)
                      |...|+.++.|..+.      .               ..++.+|||++.   ++.+.+++.|.++++
T Consensus       390 L~~~gi~v~~~~~~~------~---------------~~~~~iRis~~~~~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          390 FVRYGMCAITLKTTG------S---------------KRNEAMRICTSLLPESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             HHHTTEECEESTTTT------C---------------CCTTCEEEECSSSCGGGHHHHHHHHHHHHH
T ss_pred             HHHcCeEEeeccccC------C---------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            777788877553211      0               023679999995   334444555555443

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.81  E-value=2.8e-19  Score=168.15  Aligned_cols=262  Identities=15%  Similarity=0.104  Sum_probs=161.7

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hhc----CCCCEEEEcCCCccchHHHHH--------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLL----GTGEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll----~~GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      |.+++...+..+++++++++++|.+  ++++++||++|+.+++ .+.    +|||+|+++++.|++....+.        
T Consensus        35 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~  114 (382)
T 4eb5_A           35 HSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFE  114 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcE
Confidence            3333334567899999999999976  6777888899998644 455    899999999998876543221        


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-cCCCeEE
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIV  147 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~~~~Di~  147 (339)
                                                                 ++|.++|++||++ |+|++|+.|.....+ ..+.|++
T Consensus       115 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~  193 (382)
T 4eb5_A          115 VEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADML  193 (382)
T ss_dssp             EEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEE
T ss_pred             EEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEE
Confidence                                                       9999999999999 999999876432112 2367999


Q ss_pred             EeccccccccCCCceEEEEEEcChh-HHHHHHH---HHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHH
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGER-LAKELYF---LQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~-l~~~l~~---~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~  219 (339)
                      ++|+||+++..|   .|+++++++. +...+..   .........+....+.+...++    .++.+.++..++++++.+
T Consensus       194 ~~s~sK~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  270 (382)
T 4eb5_A          194 TISSNDIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIID  270 (382)
T ss_dssp             EEETGGGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeehHHhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999866433   2566666532 1111000   0111122334333222222222    245567777888999999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|+++++++. ..|.  .           ...+++++|.+.+. ...++.+.|...|+.++.|..++...      +.  
T Consensus       271 ~L~~~~~~~~-~~~~--~-----------~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~------~~--  327 (382)
T 4eb5_A          271 NVLKIEESYL-NGHP--E-----------KRLPNNVNVRFSYI-EGESIVLSLDMAGIQASTGSACSSKT------LQ--  327 (382)
T ss_dssp             HHTTSTTEEE-CSCS--S-----------SBCTTEEEEEETTS-CHHHHHHHHHHHTCBCBCCCGGGTSS------CC--
T ss_pred             HHhhCCCeEE-eCCc--c-----------cCCCCEEEEEeCCc-CHHHHHHHHHHCCEEEeccccccCCC------Cc--
Confidence            9998877642 2121  0           01256888887532 34567777777888888775432110      00  


Q ss_pred             CHHHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          300 PVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       300 ~~~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +......+|++    ++.+|||++...+++.++.+.++|+
T Consensus       328 ~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~  367 (382)
T 4eb5_A          328 PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLP  367 (382)
T ss_dssp             CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            11122334543    5789999996555554555544443

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.81  E-value=4.3e-18  Score=161.74  Aligned_cols=261  Identities=14%  Similarity=0.094  Sum_probs=172.9

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ++..++||+.+++++|.+++++++||++|+.+++ .+ +++||+|+++++.|.+....+.                    
T Consensus        31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~  110 (394)
T 1o69_A           31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVD  110 (394)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHH
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHH
Confidence            5779999999999999999999999999998654 46 7999999999998876532221                    


Q ss_pred             ----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc---c-CCCeEEEeccccccccCC
Q 019543          112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL---E-LGADIVMHSATKFIAGHS  159 (339)
Q Consensus       112 ----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~---~-~~~Di~~~S~sK~l~g~~  159 (339)
                                                  ++|.++|++||+++|+|++|+.|......   . ..+|+.++|.+|.++|. 
T Consensus       111 ~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~-  189 (394)
T 1o69_A          111 LLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS-  189 (394)
T ss_dssp             HHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-
T ss_pred             HHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCC-
Confidence                                        89999999999999999999876432211   1 24567777778998753 


Q ss_pred             CceEEEEEEcChhHHHHHHHHHHhcC--------------CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          160 DVMAGVLAVKGERLAKELYFLQNAEG--------------SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~~~~~--------------~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                        .+|+++++++++.+.++..+....              ..+++..+++++..++.++++.++.+++++++.+.|++. 
T Consensus       190 --~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-  266 (394)
T 1o69_A          190 --GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-  266 (394)
T ss_dssp             --SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             --CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence              378998875677777766532110              015667777666667778888888899999999999876 


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---------------------HHHHHHHccCCcceeecccCCc
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------------------ALSKHVVETTKYFSITVSFGSV  284 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---------------------~~~~~~~~~L~~~~i~v~~G~~  284 (339)
                       ++ + ++. ...         ..+...+++|.+++.                     ....++.+.|...||.++.|..
T Consensus       267 -~~-~-~~~-~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~  333 (394)
T 1o69_A          267 -FS-F-LDE-LEN---------SRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWK  333 (394)
T ss_dssp             -EE-C-CCC-CTT---------EECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCC
T ss_pred             -cc-c-cCC-CCC---------CcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCC
Confidence             32 1 221 100         001123677777521                     1456788888778998886642


Q ss_pred             ccceeccccccC--CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          285 KSLISMPCFMSH--ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       285 ~s~~~~p~~~~h--~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       .....|.....  ..++....    +..+.+|+..+...+++.++.+.++|++
T Consensus       334 -~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~t~edi~~~~~~l~~  382 (394)
T 1o69_A          334 -AMHTQEVFKGAKAYLNGNSEL----FFQKGICLPSGTAMSKDDVYEISKLILK  382 (394)
T ss_dssp             -CGGGCGGGTTCEEEECSHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             -ccccchhhhccCCCCChHHHH----HhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence             11111211000  00111100    1124566667888888888888888764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.81  E-value=1.8e-18  Score=160.80  Aligned_cols=238  Identities=13%  Similarity=0.003  Sum_probs=157.6

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--HHHH------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--RLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--~~~~------------------  111 (339)
                      +..+++++++++++|.+  .+++++||++|+.+++ .+++|||+|+++++.|++..  .++.                  
T Consensus        34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  113 (352)
T 1iug_A           34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPR  113 (352)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCC
Confidence            45789999999999976  5777888899998644 57899999999999887753  2221                  


Q ss_pred             ---------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                 ++|.++|++|  |+++|+|++|+.+... +....+.|++++|+||+++++.+ 
T Consensus       114 ~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g-  192 (352)
T 1iug_A          114 PEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG-  192 (352)
T ss_dssp             TTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC-
T ss_pred             HHHHhccCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCc-
Confidence                                       9999999999  9999999999876432 21234689999999998776533 


Q ss_pred             eEEEEEEcChhHHHH---------HHHHH-----HhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhC
Q 019543          162 MAGVLAVKGERLAKE---------LYFLQ-----NAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~---------l~~~~-----~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                       .|++++++ ++.+.         ++...     .......+....+.+...++    .++...++..++++++.+.|++
T Consensus       193 -~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  270 (352)
T 1iug_A          193 -LGFVALSP-RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE  270 (352)
T ss_dssp             -EEEEEECH-HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eeEEEECH-HHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             36777765 44443         22111     11223344433322222222    2456677778888999999987


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  303 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~  303 (339)
                      + +++. ..|.               ..+.+++|.+.+.....++.+.|...|+.++.|.      .+            
T Consensus       271 ~-g~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~------~~------------  315 (352)
T 1iug_A          271 G-GLRP-VPKR---------------FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQ------GP------------  315 (352)
T ss_dssp             T-TCEE-SCSS---------------BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECC------GG------------
T ss_pred             C-CCcc-cccc---------------cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCC------Cc------------
Confidence            6 5542 2120               1356888887532234567777777788877553      11            


Q ss_pred             HHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          304 RQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       304 ~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                           ..++.+|||++...+++.++.+.++|+
T Consensus       316 -----~~~~~iRi~~~~~~~~~~i~~~~~~l~  342 (352)
T 1iug_A          316 -----LKGKVFRLSLMGAYDRYEALGVAGMFR  342 (352)
T ss_dssp             -----GTTTEEEECCCSSCCHHHHHHHHHHHH
T ss_pred             -----cCCCEEEEEccccCCHHHHHHHHHHHH
Confidence                 034789999997655555555555544

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.81  E-value=3.6e-18  Score=164.12  Aligned_cols=240  Identities=13%  Similarity=0.015  Sum_probs=158.2

Q ss_pred             CchHHHHHHHHHhHhC-------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           54 NPTRDALESLLAKLDK-------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g-------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      .+...++++.++++++       .+++++++||++|+.+++ .+++|||+|+++++.|.+....+.              
T Consensus        95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~  174 (427)
T 3dyd_A           95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPE  174 (427)
T ss_dssp             TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred             CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccc
Confidence            3457899999999987       457888999999998644 578999999999999987654433              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---c-ccCCC---
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---P-LELGA---  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~-~~~~~---  144 (339)
                                                             ++|+++|++||+++|+|++|+.... +.   . ...+.   
T Consensus       175 ~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~  254 (427)
T 3dyd_A          175 KSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVP  254 (427)
T ss_dssp             GTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCC
T ss_pred             cCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCc
Confidence                                                   8999999999999999999975332 11   1 11222   


Q ss_pred             eEEEeccccccccCCCceEEEEEEcC------hhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKG------ERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDN  213 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~------~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~  213 (339)
                      .++++|+||.++.+|.. .|++++++      +++.+.+...... ....++...+.+...|+     .+..+.++..++
T Consensus       255 vi~~~S~sK~~~~~G~r-iG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~  332 (427)
T 3dyd_A          255 ILSCGGLAKRWLVPGWR-LGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSN  332 (427)
T ss_dssp             EEEEEESTTTSSCGGGC-CEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             EEEEeeccccCCCcCcc-eEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            37789999998877654 45666664      2455566554432 23455555444444443     356667777888


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHccC-CcceeecccCCcccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYFSITVSFGSVKSL  287 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~L-~~~~i~v~~G~~~s~  287 (339)
                      ++++.+.|+++|+++. ..|.                .+..+++.+...     ....++++.| ++.|+.+..|..+. 
T Consensus       333 ~~~l~~~L~~~~g~~~-~~p~----------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~-  394 (427)
T 3dyd_A          333 ADLCYGALAAIPGLRP-VRPS----------------GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFE-  394 (427)
T ss_dssp             HHHHHHHHHHSTTEEE-ECCS----------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGT-
T ss_pred             HHHHHHHHhcCCCcee-cCCC----------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccC-
Confidence            8999999998887743 3331                234555555411     2235666666 46788877654211 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                                            .++.+|||++..  +.++.++.|.++++
T Consensus       395 ----------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~  422 (427)
T 3dyd_A          395 ----------------------YPNFIRVVITVPEVMMLEACSRIQEFCE  422 (427)
T ss_dssp             ----------------------CTTEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence                                  247899999842  22333444444443

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.81  E-value=1.4e-18  Score=164.65  Aligned_cols=207  Identities=16%  Similarity=0.135  Sum_probs=142.9

Q ss_pred             chHHHHHHHHHhHh----CC----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLD----KA----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g~----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      +...+|++.+++++    |.    +++++++||++|+..++ .+++|||+|+++++.|++....+.              
T Consensus        78 ~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~  157 (389)
T 1o4s_A           78 RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMS  157 (389)
T ss_dssp             TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGG
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCc
Confidence            34677888888876    53    46888888899998644 478999999999998877653322              


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C--c-cc----CCC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R--P-LE----LGA  144 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~--~-~~----~~~  144 (339)
                                                             ++|+++|++||+++|+|++|+.+... .  . ..    .+.
T Consensus       158 ~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~  237 (389)
T 1o4s_A          158 KNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR  237 (389)
T ss_dssp             GTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTT
T ss_pred             cCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCc
Confidence                                                   89999999999999999999865442 1  1 11    357


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-HHHHHHHHHHHHHHHHHHHhC
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      |++++|+||+++.+| ...|++++++ ++.+.+...........++...+.+...|+. ++...++..++.+++.+.|++
T Consensus       238 ~i~~~s~sK~~~~~G-~r~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~L~~  315 (389)
T 1o4s_A          238 IVYINGFSKSHSMTG-WRVGYLISSE-KVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKK  315 (389)
T ss_dssp             EEEEEESTTTTTCGG-GCCEEEECCH-HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeechhhcCCcc-cceEEEEeCH-HHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999997555 4568888864 6888887766555555666655544444433 455566667788888888887


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCC
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGS  283 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~  283 (339)
                      + +++.+ .|                ..+.++++.+.  ....++.+.|. ..|+.++.|.
T Consensus       316 ~-g~~~~-~~----------------~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~  356 (389)
T 1o4s_A          316 M-GVKFV-EP----------------EGAFYLFFKVR--GDDVKFCERLLEEKKVALVPGS  356 (389)
T ss_dssp             T-TCCCC-CC----------------SBSSEEEEECS--SCHHHHHHHHHHHHCEECEEGG
T ss_pred             c-CCeee-cC----------------CcceEEEEeCC--CCHHHHHHHHHHHCCEEEeCch
Confidence            6 44321 11                12345666664  23456777775 6788776553

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.81  E-value=2.7e-18  Score=161.44  Aligned_cols=233  Identities=12%  Similarity=0.041  Sum_probs=155.3

Q ss_pred             HHHHHHHHHhH----hCC----CeEEEcCcHHHHHHHH-HHhcCC--CCEEEEcCCCccchHHHHH--------------
Q 019543           57 RDALESLLAKL----DKA----DRALCFTSGMAALAAV-THLLGT--GEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        57 ~~~le~~la~~----~g~----~~~l~~~sG~~A~~~i-l~ll~~--GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ..++++.++++    +|.    ++++++++|++|+..+ ..++++  ||+|+++.+.|.+....+.              
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~  140 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKE  140 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCC
Confidence            34555555554    463    5788888889999854 457899  9999999999887654332              


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c---c---------cC
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P---L---------EL  142 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~---~---------~~  142 (339)
                                                          ++|+++|++||+++|+|++|+...... +   .         ..
T Consensus       141 ~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (376)
T 3ezs_A          141 NDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAF  220 (376)
T ss_dssp             GTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTC
T ss_pred             CCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccccccccc
Confidence                                                788899999999999999997644321 1   1         24


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~  219 (339)
                      +.++++.|+||++|.+| ...|+++++ +++++.+.......+...++...+.+...++   .++...++..++.+++.+
T Consensus       221 ~~~i~~~s~sK~~g~~G-~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~  298 (376)
T 3ezs_A          221 KNVLVIHSLSKRSSAPG-LRSGFIAGD-SRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARK  298 (376)
T ss_dssp             TTEEEEEESTTTTTCGG-GCCEEEEEC-HHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecchhccCCcc-ceeEEEeeC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            56799999999997555 445777775 4788888776655566677766555444443   355566667777788888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccceeccccccCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      .|+   ++.   .|                +.+.++++.+.   ...++.+.|.. .|+.++.|..+..   .       
T Consensus       299 ~l~---~~~---~~----------------~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~---~-------  343 (376)
T 3ezs_A          299 IFK---NTL---IY----------------PYSFYVYLPVQ---NGENFAKTLYQNEGIITLPALYLGR---N-------  343 (376)
T ss_dssp             HST---TCC---CC----------------SBSSEEEEECS---CHHHHHHHHHHHHCCBCEEGGGGCS---T-------
T ss_pred             Hhc---CCC---CC----------------CcceEEEEECC---CHHHHHHHHHHhCCEEEeCcHHhCC---C-------
Confidence            776   221   22                14567788776   23566776755 7888876653221   0       


Q ss_pred             CCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Q 019543          299 IPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  335 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~  335 (339)
                               +..++.+|||++.  ++.+..++.|.++++
T Consensus       344 ---------~~~~~~iRis~~~~~~~i~~~l~~l~~~l~  373 (376)
T 3ezs_A          344 ---------RIGADYVRLALVYDTPLLEKPLEIIETYRE  373 (376)
T ss_dssp             ---------TTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             ---------CCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence                     0145789999975  223344455555554

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.81  E-value=1.9e-18  Score=163.24  Aligned_cols=239  Identities=12%  Similarity=0.070  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhH----hC----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKL----DK----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~----~g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.++++    +|    .+ +++++++|++|+.+++ .+++|||+|+++++.|++....++               
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~  148 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPH  148 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCccc
Confidence            56677777776    35    34 7888888899998654 478999999999998887654332               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cc-----cCCCe
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PL-----ELGAD  145 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~-----~~~~D  145 (339)
                                                           ++|+++|++||+++|+|++|+...+ +.   ++     ..+.|
T Consensus       149 ~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  228 (386)
T 1u08_A          149 FRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA  228 (386)
T ss_dssp             CCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred             CcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcE
Confidence                                                 8899999999999999999976432 11   11     13579


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh----HHHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT----MALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L  221 (339)
                      ++++|+||+++.+| ...|+++++ +++++.++......+...++...+.+...|+.    ++...++..++.+++.+.|
T Consensus       229 i~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  306 (386)
T 1u08_A          229 VAVSSFGKTYHMTG-WKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL  306 (386)
T ss_dssp             EEEEEHHHHTTCGG-GCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHT
T ss_pred             EEEecchhhcCCcc-cceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998655 345788876 47888887766544555565544444434432    4455666778888899999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCC-cceeecccCCcccceeccccccCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      +++ ++. +..|                ..+.++++.+.+.  ....++.+.|. ..|+.++.|..+..  .+       
T Consensus       307 ~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~-------  359 (386)
T 1u08_A          307 NES-RLE-ILPC----------------EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--DP-------  359 (386)
T ss_dssp             TSS-SCE-ECCC----------------CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--SC-------
T ss_pred             HHC-CCe-ecCC----------------CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC--CC-------
Confidence            876 443 2112                1245788877542  23456776664 56888776543210  00       


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                ..++.+|||++.  +++.++.+.++|++
T Consensus       360 ----------~~~~~iRis~~~--~~~~i~~~~~~l~~  385 (386)
T 1u08_A          360 ----------FPHKLIRLCFAK--KESTLLAAAERLRQ  385 (386)
T ss_dssp             ----------CCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             ----------CCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence                      134789999985  45656677776654

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.81  E-value=1.8e-18  Score=163.71  Aligned_cols=240  Identities=15%  Similarity=0.112  Sum_probs=158.7

Q ss_pred             HHHHHHHHHhHh--------CCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD--------KADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~--------g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..++++.+++++        ..+++++++||++|+.+++ .+++|||+|+++.+.|.+....+.                
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~  149 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENR  149 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccC
Confidence            456677777665        2357889999999998644 588999999999998877654332                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cccC-CCeEEEeccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PLEL-GADIVMHSAT  152 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~~~-~~Di~~~S~s  152 (339)
                                                        ++|+++|++||+++|+|++|+......    .... ..+++++|+|
T Consensus       150 ~~~d~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~s  229 (391)
T 3h14_A          150 LQPVPADFAGLDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFS  229 (391)
T ss_dssp             TSCCHHHHTTSCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESS
T ss_pred             CCCCHHHHHhcCCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEech
Confidence                                              889999999999999999997543321    1122 3469999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR---GVKTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~---~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |.++.+| ...|++++++ ++.+.+......++...++...+.+..   ..+.+..+.++..++.+++.+.|++++.+. 
T Consensus       230 K~~g~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-  306 (391)
T 3h14_A          230 KYFSMTG-WRVGWMVVPE-DQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKAGFTR-  306 (391)
T ss_dssp             STTCCTT-SCCEEEECCG-GGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred             hccCCcc-ceeEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcCCCc-
Confidence            9997655 4567887765 688888877766666667665444433   334456667777888888999888764321 


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCc-ceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKY-FSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~-~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                      +..|                ..+.++++.+.. .....++++.|.. .|+.++.|..+..   +                
T Consensus       307 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~----------------  351 (391)
T 3h14_A          307 IAPP----------------DGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP---E----------------  351 (391)
T ss_dssp             BCCC----------------CBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT---T----------------
T ss_pred             ccCC----------------CeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC---C----------------
Confidence            1111                123456666643 2234567777544 5888876653211   0                


Q ss_pred             CCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          308 GLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       308 g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                       ..++.+|||++..  +.++.++.|.++++
T Consensus       352 -~~~~~iRis~~~~~~~i~~~l~~l~~~~~  380 (391)
T 3h14_A          352 -RGAGTLRFSYARATADIEEGLDRLEAFMQ  380 (391)
T ss_dssp             -TGGGEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             -CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence             1347899999982  22333444444443

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.81  E-value=2.3e-18  Score=164.27  Aligned_cols=242  Identities=17%  Similarity=0.184  Sum_probs=155.8

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...++++.++++++        .+++++++||++|+.+++ .++++||+|+++++.|++....+.               
T Consensus        80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  159 (409)
T 2gb3_A           80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE  159 (409)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCC
Confidence            45788888888764        257888899999998644 578999999999988865432111               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C--c-cc--CCCeEEE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R--P-LE--LGADIVM  148 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~--~-~~--~~~Di~~  148 (339)
                                                           ++|+++|++||+++|+|++|+.+... .  + +.  .+.|+++
T Consensus       160 ~~~~~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~  239 (409)
T 2gb3_A          160 GFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVI  239 (409)
T ss_dssp             TSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEE
T ss_pred             CCccHHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEE
Confidence                                                 88999999999999999999865431 1  1 21  2569999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      +|+||+++.+| ...|+++++++++.+.++....... ..++...+.+...|+    .++...++..++.+++.+.|+++
T Consensus       240 ~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  317 (409)
T 2gb3_A          240 DSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  317 (409)
T ss_dssp             EESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999997655 4568888876467788877665544 566665544444442    24555666777888888888876


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc------eeecccCCcccceeccccccCCC
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF------SITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~------~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                       ++..+..|                ..+.++++.+.+ ....++.+.|...      |+.++.|..+..  .+       
T Consensus       318 -g~~~~~~~----------------~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~--~~-------  370 (409)
T 2gb3_A          318 -GLKRFTKP----------------SGAFYITAELPV-EDAEEFARWMLTDFNMDGETTMVAPLRGFYL--TP-------  370 (409)
T ss_dssp             -TCCCBCCC----------------SBSSEEEEECSS-SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS--ST-------
T ss_pred             -CceeeeCC----------------CeeEEEEEEeCC-CCHHHHHHHHHhccccccCcEEEeCchHhCC--CC-------
Confidence             44321111                123455556642 1245666666543      888775542210  00       


Q ss_pred             CCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Q 019543          299 IPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  335 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~  335 (339)
                               +..++.+|||++.  ++.+..++.|.++++
T Consensus       371 ---------~~~~~~iRis~~~~~e~i~~~~~~l~~~l~  400 (409)
T 2gb3_A          371 ---------GLGKKEIRIACVLEKDLLSRAIDVLMEGLK  400 (409)
T ss_dssp             ---------TTTSSEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence                     1135789999993  122333444444443

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.81  E-value=3.7e-18  Score=163.82  Aligned_cols=245  Identities=15%  Similarity=0.159  Sum_probs=154.8

Q ss_pred             CchHHHHHHHHHhHhCCC-----------eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--------------
Q 019543           54 NPTRDALESLLAKLDKAD-----------RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~-----------~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--------------  107 (339)
                      .+.++++.+.+++.+|.+           ++++++++++|+..++ .+++|||+|+++++.|.+..              
T Consensus        81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~  160 (425)
T 2r2n_A           81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVA  160 (425)
T ss_dssp             HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeC
Confidence            355667777777766742           4566666689998644 57899999999999875432              


Q ss_pred             ------------HHH-------------H------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c
Q 019543          108 ------------RLL-------------S------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S  137 (339)
Q Consensus       108 ------------~~~-------------~------------------------~~I~~la~~~g~~livD~a~a~g~~-~  137 (339)
                                  ..+             .                        ++|+++|++||++||+|++|+...+ +
T Consensus       161 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g  240 (425)
T 2r2n_A          161 SDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNK  240 (425)
T ss_dssp             EETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS
T ss_pred             cCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCC
Confidence                        111             1                        6999999999999999999974322 1


Q ss_pred             C---c-cc---CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh--------
Q 019543          138 R---P-LE---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT--------  202 (339)
Q Consensus       138 ~---~-~~---~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~--------  202 (339)
                      .   . ..   .+.+++++|+||+++ +| ...|++++++ ++++.+.......+...++...+++...|+.        
T Consensus       241 ~~~~~~~~~~~~~~~i~~~s~SK~~~-~G-lRiG~~~~~~-~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~  317 (425)
T 2r2n_A          241 FRVPTFLSMDVDGRVIRADSFSKIIS-SG-LRIGFLTGPK-PLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA  317 (425)
T ss_dssp             SCCCCTGGGCTTSCEEEEEESTTTTC-ST-TCCEEEEEEH-HHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCCCCEEEEccchhhcc-Cc-cceEEEecCH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHH
Confidence            1   1 11   234699999999997 55 4567887775 6888887776655566677665554444443        


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHH-HHccCCcceeec
Q 019543          203 -MALRVEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKH-VVETTKYFSITV  279 (339)
Q Consensus       203 -~~~r~~~~~~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~-~~~~L~~~~i~v  279 (339)
                       +....++..++.+++.+.|++ .+++..+..|.                .|..+++.+.+.....+ +.+.|...|+.+
T Consensus       318 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~----------------~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v  381 (425)
T 2r2n_A          318 HVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA----------------AGMFLWIKVKGINDVKELIEEKAVKMGVLM  381 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS----------------BSSEEEEEETTCSCCHHHHHTHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC----------------ceEEEEEEeCCCCCHHHHHHHHHHHCCcEE
Confidence             333445566777888888876 46553333331                35677887753212233 456666778888


Q ss_pred             ccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHh
Q 019543          280 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  335 (339)
Q Consensus       280 ~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~  335 (339)
                      +.|..+..   +.               +...+.+|||++..   +.++.++.|.++++
T Consensus       382 ~pg~~f~~---~~---------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          382 LPGNAFYV---DS---------------SAPSPYLRASFSSASPEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             EEGGGGSS---ST---------------TSCCCEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             echhhhcC---CC---------------CCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            76653221   00               01247899999742   23444555555544

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.81  E-value=1e-18  Score=165.93  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=159.9

Q ss_pred             chHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           55 PTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      +...+|++.+++++|.  ++++++++|++|+.+++ .++++||+|+++.+.|++....+.                    
T Consensus        74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~~~  153 (397)
T 2zyj_A           74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDA  153 (397)
T ss_dssp             TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHH
T ss_pred             CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCCCCHHH
Confidence            3578999999999985  35677777788998544 578999999999998876543322                    


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCc----ccCC------CeEEE
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRP----LELG------ADIVM  148 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~----~~~~------~Di~~  148 (339)
                                                      ++|+++|++||+++|+|++|+.+.. +..    ..++      ..+++
T Consensus       154 l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~  233 (397)
T 2zyj_A          154 LEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYL  233 (397)
T ss_dssp             HHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEE
T ss_pred             HHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEE
Confidence                                            5899999999999999999986543 111    1222      23899


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHHHHHHHHHHHHHHHhC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +|+||+++ +| ...|+++++ +++.+.++.....+....++...+.+...|+     .+....++..++.+++.+.|++
T Consensus       234 ~s~sK~~~-~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~  310 (397)
T 2zyj_A          234 GSFSKVLS-PG-LRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDR  310 (397)
T ss_dssp             EESTTTTC-GG-GCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccccc-cc-ceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 44 456788876 4788877765544333346655544444343     2445566667788888888876


Q ss_pred             -CC-CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          224 -HP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       224 -~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                       .| ++.. ..|                +.+.++++.+.+.....++.+.|...|+.++.|..+..  .           
T Consensus       311 ~~~~g~~~-~~~----------------~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~--~-----------  360 (397)
T 2zyj_A          311 EVPKEVRY-TRP----------------KGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFA--N-----------  360 (397)
T ss_dssp             HSCTTSEE-CCC----------------SBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCT--T-----------
T ss_pred             HCCCCeEE-ccC----------------CccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcC--C-----------
Confidence             45 4532 222                13567788875322345677777666888776543210  0           


Q ss_pred             HHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHh
Q 019543          302 EVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  335 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~  335 (339)
                            +..++.+|||++..   +.++.++.|.++++
T Consensus       361 ------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  391 (397)
T 2zyj_A          361 ------GGGENTLRLSYATLDREGIAEGVRRLGRALK  391 (397)
T ss_dssp             ------SCCTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence                  01347899999975   33444555555554

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.81  E-value=2.2e-18  Score=163.09  Aligned_cols=234  Identities=14%  Similarity=0.135  Sum_probs=150.5

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..+|++.+++++    |    .++++++++|++|+.+++ .+++|||+|+++++.|.+....++                
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~  149 (385)
T 1b5p_A           70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEG  149 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGT
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccC
Confidence            456666666655    4    246788888899998654 578999999999999876654332                


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----CcccC--CCeEEE
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPLEL--GADIVM  148 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~~~--~~Di~~  148 (339)
                                                           ++|+++|++||++||+|++|+...+.    .....  +.++++
T Consensus       150 ~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~  229 (385)
T 1b5p_A          150 FVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTV  229 (385)
T ss_dssp             TCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEE
T ss_pred             CCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEE
Confidence                                                 88999999999999999999865431    11122  457999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-------hHHHHHHHHHHHHHHHHHHH
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-------TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-------~~~~r~~~~~~~a~~l~~~L  221 (339)
                      +||||.++.+| ...|+++++ +++.+.++..+.......+.....++...|+       .++...++..++.+++.+.|
T Consensus       230 ~s~SK~~~~~G-~RiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  307 (385)
T 1b5p_A          230 NGAAKAFAMTG-WRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGL  307 (385)
T ss_dssp             EESTTTTTCGG-GCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EechhhcCCcc-cceEEEEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998766 446788776 4687888776554444556554444333332       24445566667778888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      +++ +++. ..|                ..+..+++.+.. .....++.+.|...|+.++.|..+.              
T Consensus       308 ~~~-g~~~-~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~--------------  355 (385)
T 1b5p_A          308 TAL-GLKA-VRP----------------SGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA--------------  355 (385)
T ss_dssp             HHH-TCCB-CCC----------------SBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT--------------
T ss_pred             HHC-CCee-cCC----------------CeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccC--------------
Confidence            765 4431 111                022345555531 1134567777767788877664321              


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                               .++.+|||++ .+ ++.++...+.|+
T Consensus       356 ---------~~~~iRis~~-~~-~~~i~~~l~~l~  379 (385)
T 1b5p_A          356 ---------AFGHVRLSYA-TS-EENLRKALERFA  379 (385)
T ss_dssp             ---------CTTEEEEECC-SC-HHHHHHHHHHGG
T ss_pred             ---------CCCeEEEEec-CC-HHHHHHHHHHHH
Confidence                     1367999999 33 333444444443

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.81  E-value=4.4e-18  Score=161.41  Aligned_cols=239  Identities=13%  Similarity=0.141  Sum_probs=157.6

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..++++.+++++    |    .++++++++|++|+.+++ .+++|||+|+++.+.|++....+.                
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g  147 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDG  147 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETT
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCC
Confidence            667777777763    5    356888888899998654 578999999999998876543221                


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cc-c-----C
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PL-E-----L  142 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~-~-----~  142 (339)
                                                             ++|+++|++||+++|+|++|+.... +.   .+ .     .
T Consensus       148 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  227 (399)
T 1c7n_A          148 YYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA  227 (399)
T ss_dssp             EEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred             CEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence                                                   8899999999999999999976432 11   11 1     2


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-CCChHHHHHHHhchh----hHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVK----TMALRVEKQQDNAQKI  217 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l  217 (339)
                      +.++++.|+||+++.+| ...|+++++++++.+.++.....++. ..++...+.+...++    .++...++..++.+++
T Consensus       228 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  306 (399)
T 1c7n_A          228 DKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIV  306 (399)
T ss_dssp             TTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34689999999998655 44678888765688888776655543 456655544443332    3455566677888889


Q ss_pred             HHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCH-HHHHHHHccCC-cceeecccCCcccceecccc
Q 019543          218 AEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       218 ~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~-~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+.|++ +|++..+  +                +.++ ++++.+.+. ....++.+.|. ..|+.++.|..+.    +  
T Consensus       307 ~~~L~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~----~--  362 (399)
T 1c7n_A          307 KDFFEVNHPEIKAP--L----------------IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFG----D--  362 (399)
T ss_dssp             HHHHHHHCTTSBCC--C----------------CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGC----G--
T ss_pred             HHHHHhhCCCCeEe--c----------------CCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccC----C--
Confidence            999987 6765421  1                1234 446776421 13456777775 6788877654321    1  


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                                     ..++.+|||++..  +.++.++.|.++++
T Consensus       363 ---------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~  391 (399)
T 1c7n_A          363 ---------------GGIGFERINLAAPSSVIQESLERLNKALK  391 (399)
T ss_dssp             ---------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCeEEEEeccCHHHHHHHHHHHHHHHH
Confidence                           0347899999975  22333445555544

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.81  E-value=2.7e-18  Score=163.55  Aligned_cols=240  Identities=14%  Similarity=0.092  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           56 TRDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...++++.++++++        .+++++++||++|+.+++ .+++|||+|+++++.|++....+.               
T Consensus        79 g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  158 (406)
T 1xi9_A           79 GLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE  158 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGG
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCc
Confidence            35677777777762        257888888899998654 478999999999998876543322               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c--c-c--CCC-eE
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P--L-E--LGA-DI  146 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-~--~-~--~~~-Di  146 (339)
                                                            ++|+++|++||+++|+|++|+.+.... .  + .  .+. |+
T Consensus       159 ~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i  238 (406)
T 1xi9_A          159 DWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVI  238 (406)
T ss_dssp             TSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEE
T ss_pred             CCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEE
Confidence                                                  899999999999999999998654321 1  1 1  245 89


Q ss_pred             EEeccccccccCCCceEEEEE--EcCh---hHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLA--VKGE---RLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKI  217 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~--~~~~---~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l  217 (339)
                      +++|+||+++.+|. ..|+++  +++.   ++++.++...... ...++...+.+...|    +.++...++..++.+++
T Consensus       239 ~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  316 (406)
T 1xi9_A          239 VMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYI  316 (406)
T ss_dssp             EEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            99999999986553 346666  5431   6778777665543 455555444433333    23455566677888889


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCC--HHHHHHHHccCC-cceeecccCCcccceecccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGS--LALSKHVVETTK-YFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~--~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+.|+++|++..+ .|                 .++ ++++.+..  .....++.+.|. ..|+.++.|..+..      
T Consensus       317 ~~~L~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~------  372 (406)
T 1xi9_A          317 YKRLNEIPGISTT-KP-----------------QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE------  372 (406)
T ss_dssp             HHHHHTSTTEECC-CC-----------------CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG------
T ss_pred             HHHHHhCCCCeee-cC-----------------CeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC------
Confidence            9999888765421 11                 233 33445542  123456777774 77888776543210      


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                                     ..++.+|||++.  ++.++.++.|.+++++
T Consensus       373 ---------------~~~~~lRis~~~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          373 ---------------YGAGHFRAVFLPPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             ---------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence                           024679999982  1123334445555443

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.81  E-value=1.4e-18  Score=167.20  Aligned_cols=238  Identities=13%  Similarity=0.110  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHhHhC----------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH--------------
Q 019543           56 TRDALESLLAKLDK----------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL--------------  110 (339)
Q Consensus        56 ~~~~le~~la~~~g----------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~--------------  110 (339)
                      ...+|+++++++++          .+++++++||++|+.+++ .++++||+|+++.+.|.+....+              
T Consensus        87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~  166 (435)
T 3piu_A           87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCT  166 (435)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECC
T ss_pred             CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCC
Confidence            35789999999887          567889999999998654 58899999999988776543111              


Q ss_pred             ------------------------H----------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-c----
Q 019543          111 ------------------------S----------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-P----  139 (339)
Q Consensus       111 ------------------------~----------------------~~I~~la~~~g~~livD~a~a~g~~~~-~----  139 (339)
                                              +                      ++|+++|++||++||+|++|+.+.+.. .    
T Consensus       167 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~  246 (435)
T 3piu_A          167 SSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISV  246 (435)
T ss_dssp             GGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCH
T ss_pred             CccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCH
Confidence                                    0                      889999999999999999997643321 1    


Q ss_pred             c----c---------CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH---Hhchh--
Q 019543          140 L----E---------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC---LRGVK--  201 (339)
Q Consensus       140 ~----~---------~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~---~~~l~--  201 (339)
                      .    .         ....++++|+||.+|.+| ...|+++++++.+.+.++.....+  ..++...+.+   +...+  
T Consensus       247 ~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~  323 (435)
T 3piu_A          247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFG--LVSSQTQHLLSAMLSDKKLT  323 (435)
T ss_dssp             HHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGS--CCCHHHHHHHHHHHHCHHHH
T ss_pred             HHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhcChHHH
Confidence            0    1         112388999999997555 456788886666766666544322  2334333222   22222  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH------HHHHHHHccCC
Q 019543          202 --TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETTK  273 (339)
Q Consensus       202 --~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~------~~~~~~~~~L~  273 (339)
                        .+..+.++..++.+++.+.|+++ ++..  .+.               ..+.++++.+++.      ....++++.|.
T Consensus       324 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~---------------~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~  385 (435)
T 3piu_A          324 KNYIAENHKRLKQRQKKLVSGLQKS-GISC--LNG---------------NAGLFCWVDMRHLLRSNTFEAEMELWKKIV  385 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-TCEE--CCC---------------CSSSEEEEECGGGSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCcc--cCC---------------CeeEEEEEEcccccccCCchhHHHHHHHHH
Confidence              23445566677888888989876 4432  111               1346788877532      13456777664


Q ss_pred             -cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHh
Q 019543          274 -YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  335 (339)
Q Consensus       274 -~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~  335 (339)
                       ..|+.++.|..+.    +                 ..++.+||+++..   +.++.++.|.++++
T Consensus       386 ~~~gi~v~~g~~~~----~-----------------~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~  430 (435)
T 3piu_A          386 YEVHLNISPGSSCH----C-----------------TEPGWFRVCFANLPERTLDLAMQRLKAFVG  430 (435)
T ss_dssp             HTSCEECEEGGGGT----C-----------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHCCEEEeCCcccC----C-----------------CCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence             3488877654321    1                 1357899999863   33444555555554

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.80  E-value=3.9e-19  Score=166.19  Aligned_cols=229  Identities=17%  Similarity=0.085  Sum_probs=155.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCE--EEEcCCCccch-----H-HH--------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEE--IVAGDDLYGGT-----D-RL--------------  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~--Vi~~~~~y~~~-----~-~~--------------  109 (339)
                      .++..++||+++++++|.+..++++||++|+.++ ..++.+||+  |+++++.+...     . ..              
T Consensus        46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  125 (359)
T 3pj0_A           46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQL  125 (359)
T ss_dssp             BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTSC
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCcCCC
Confidence            4678999999999999999889999999998754 457788887  55554432110     0 00              


Q ss_pred             -----HH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---c-C--cccCCCeEEEec
Q 019543          110 -----LS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL---S-R--PLELGADIVMHS  150 (339)
Q Consensus       110 -----~~----------------------------~~I~~la~~~g~~livD~a~a~g~~---~-~--~~~~~~Di~~~S  150 (339)
                           +.                            ++|+++|++||++||+|++|..+..   + .  .+..+.|+++.|
T Consensus       126 ~d~~~l~~~~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s  205 (359)
T 3pj0_A          126 LTIDDIKSLREPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS  205 (359)
T ss_dssp             CCHHHHHTCSSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEE
T ss_pred             cCHHHHHhccCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEe
Confidence                 00                            6679999999999999999864431   1 1  122467999999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      +||+++++   .||+++.+ +++++.++..+..++..+  ....+..+...++....++++..++++++.+.|+++++++
T Consensus       206 ~sK~~~~~---~gg~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~  281 (359)
T 3pj0_A          206 FYKGIGGI---AGAILAGN-DDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVK  281 (359)
T ss_dssp             SSSTTCCS---SCEEEEEC-HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ccccCCCc---ceEEEECC-HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCce
Confidence            99999875   34777765 578888887665554322  2222333334555555566777888999999999988875


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ....|.                .++.+++.+..  ......+.+.|.+.|+.++.|..+.   .+               
T Consensus       282 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~---~~---------------  327 (359)
T 3pj0_A          282 TVPEVP----------------VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEK---SA---------------  327 (359)
T ss_dssp             EESSSC----------------SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEE---ET---------------
T ss_pred             eeccCC----------------cceEEEEEecCccchhHHHHHHHHHhcCcEecCCcccc---CC---------------
Confidence            432332                45677777643  2345678888888899888764311   11               


Q ss_pred             CCCCCCeEEEEeccCC
Q 019543          307 RGLTEDLVRISVGIED  322 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~  322 (339)
                         ..+.+|++++...
T Consensus       328 ---~~~~~r~~i~~~~  340 (359)
T 3pj0_A          328 ---DVCAFEVSVGDAF  340 (359)
T ss_dssp             ---TEEEEEEECCTTG
T ss_pred             ---CceEEEEEecCcc
Confidence               3467999998654

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.80  E-value=1.4e-18  Score=164.46  Aligned_cols=241  Identities=17%  Similarity=0.131  Sum_probs=161.0

Q ss_pred             CchHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccc--hHHHHH----------------
Q 019543           54 NPTRDALESLLAKLDKAD---RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGG--TDRLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~--~~~~~~----------------  111 (339)
                      .+..+++++.+++++|.+   .+++++||++|+.++ ..++++||+|+++++.|.+  ....++                
T Consensus        66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  145 (393)
T 1vjo_A           66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEV  145 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCC
Confidence            367889999999999975   577888889999854 4578999999999999887  443222                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-ccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|++||+++|+|++|+.|..... ...+.|++++|+||++++
T Consensus       146 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~  225 (393)
T 1vjo_A          146 FSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGC  225 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCS
T ss_pred             CCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccC
Confidence                                             8999999999999999999986643211 234679999999999987


Q ss_pred             CCCceEEEEEEcChhHHHHHHHH----HH---------------hcCC-CCChHHHHHHHhchhh-----HHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELYFL----QN---------------AEGS-GLAPFDCWICLRGVKT-----MALRVEKQQD  212 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~----~~---------------~~~~-~~~~~~a~~~~~~l~~-----~~~r~~~~~~  212 (339)
                      ++  ..|++++++ ++.+.++..    ..               .+.. ..++...+.+...++.     ++...++..+
T Consensus       226 ~~--~~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  302 (393)
T 1vjo_A          226 SP--GASPFTMSS-RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQK  302 (393)
T ss_dssp             CS--SCEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CC--ceEEEEECH-HHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            65  247888765 566665321    00               1112 4555544444444443     3456677778


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceecc
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMP  291 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p  291 (339)
                      +.+++.+.|++. +++. ..|     +.+        ..+.+++|.+++.....++.+.|... |+.++.|..      +
T Consensus       303 ~~~~l~~~L~~~-g~~~-~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~------~  361 (393)
T 1vjo_A          303 NVEYLWERLEDI-GLSL-HVE-----KEY--------RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLG------E  361 (393)
T ss_dssp             HHHHHHHHHHHT-TCCB-SSC-----GGG--------BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCG------G
T ss_pred             HHHHHHHHHHHc-CCcc-cCC-----ccc--------cCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCcc------c
Confidence            889999999876 4431 111     000        13467888774323356778888665 888876542      1


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEE-eccCCHHHHHHHHHHHHh
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRIS-VGIEDVNDLISDLDKALR  335 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRis-vg~e~~~~li~~l~~al~  335 (339)
                      .                 .++.+||| ++....++.++.+.++|+
T Consensus       362 ~-----------------~~~~iRis~~~~~~~~~~i~~~~~~l~  389 (393)
T 1vjo_A          362 L-----------------AGKVWRVGLMGFNSRKESVDQLIPALE  389 (393)
T ss_dssp             G-----------------TTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred             c-----------------CCCEEEEeCCccCChHHHHHHHHHHHH
Confidence            0                 24789999 465555555555555554

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.80  E-value=1.4e-18  Score=165.08  Aligned_cols=241  Identities=12%  Similarity=0.115  Sum_probs=156.0

Q ss_pred             chHHHHHHHHHhHhCCCe---EEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccc--hHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKADR---ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGG--TDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~---~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~--~~~~~~-----------------  111 (339)
                      +..+++++++++++|.+.   +++++||++|+.+ +..+++|||+|+++++.|.+  ....+.                 
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  125 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVF  125 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            567899999999998753   4556678999985 44588999999999998876  332222                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|++||+++|+|++|+.+... +....++|++++|++|+++++
T Consensus       126 d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~  205 (411)
T 3nnk_A          126 TPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGP  205 (411)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCC
T ss_pred             CHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCC
Confidence                                            89999999999999999999876542 223457899999999997765


Q ss_pred             CCceEEEEEEcChhHHHHHHHHH------------------------------------HhcCCCCChHHHHHHHhchhh
Q 019543          159 SDVMAGVLAVKGERLAKELYFLQ------------------------------------NAEGSGLAPFDCWICLRGVKT  202 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~a~~~~~~l~~  202 (339)
                      .+  .|++++++ ++.+.++...                                    .....+.+....+.+...++.
T Consensus       206 ~g--~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  282 (411)
T 3nnk_A          206 SG--TSPITLSA-RMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL  282 (411)
T ss_dssp             SS--EEEEEECH-HHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH
T ss_pred             Cc--eEEEEECH-HHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH
Confidence            42  57887765 6666665432                                    001122333332222222322


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ce
Q 019543          203 -----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FS  276 (339)
Q Consensus       203 -----~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~  276 (339)
                           ++...++..++++++.+.|++. +++.+ .|.             ....+.+++|.+.+.....++.+.|.. .|
T Consensus       283 ~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g  347 (411)
T 3nnk_A          283 ILQEGLDYGIARHKLHGDALVKGIQAM-GLETF-GDL-------------KHKMNNVLGVVIPQGINGDQARKLMLEDFG  347 (411)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC-SCG-------------GGBCSSEEEEECCTTCCHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeC-CCc-------------ccccccEEEEECCCCCCHHHHHHHHHHhcC
Confidence                 4556677778888999999876 43321 110             012457888887533334567777755 48


Q ss_pred             eecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe-ccCCHH----HHHHHHHHHHhc
Q 019543          277 ITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GIEDVN----DLISDLDKALRT  336 (339)
Q Consensus       277 i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~e~~~----~li~~l~~al~~  336 (339)
                      +.++.|.      .+                 ..++.+|||+ +...++    .+++.|.+++++
T Consensus       348 i~v~~g~------~~-----------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  389 (411)
T 3nnk_A          348 IEIGTSF------GP-----------------LHGKVWRIGTMGYNARKDCVMTTLSALEAVLNY  389 (411)
T ss_dssp             EEEEECC------GG-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEeCcc------CC-----------------CCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHH
Confidence            8877552      11                 1346899998 755444    444555555443

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.80  E-value=2e-18  Score=165.39  Aligned_cols=248  Identities=14%  Similarity=0.161  Sum_probs=161.2

Q ss_pred             CCcccCCCCchHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           46 PYDYTRSGNPTRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      .+.|+....+..+++.+.+++.+|    .+.+++++||++|+.+++ .++++||+|++..+.|++....+.         
T Consensus        91 ~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~  170 (421)
T 3l8a_A           91 IFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVEN  170 (421)
T ss_dssp             CSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEE
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEec
Confidence            355665555667777777777776    346778888888998644 578999999999998876553322         


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c---Ccc-
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S---RPL-  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~---~~~-  140 (339)
                                                                    ++|+++|++||++||+|++|+.... +   .++ 
T Consensus       171 ~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~  250 (421)
T 3l8a_A          171 SLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLN  250 (421)
T ss_dssp             ECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             cccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHH
Confidence                                                          8899999999999999999965322 1   111 


Q ss_pred             c-----CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-CCChHHHHHHHhchh----hHHHHHHHH
Q 019543          141 E-----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVK----TMALRVEKQ  210 (339)
Q Consensus       141 ~-----~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-~~~~~~a~~~~~~l~----~~~~r~~~~  210 (339)
                      .     .+.++++.|+||+++.+| ...|+++++++++.+.+.......+. ..++...+.+...++    .++.+.++.
T Consensus       251 ~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~  329 (421)
T 3l8a_A          251 TLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVI  329 (421)
T ss_dssp             GSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            1     234599999999998555 45678887756788877766543433 566665444443333    245666777


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCC-cceeecccCCcccce
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLI  288 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~-~~~i~v~~G~~~s~~  288 (339)
                      .++.+++.+.|+++|++..+. |.                .+.++++.+... ....++.+.|. ..|+.++.|..+.  
T Consensus       330 ~~~~~~l~~~L~~~~~i~~~~-~~----------------~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~--  390 (421)
T 3l8a_A          330 EGNIKLVIKELEAKTKIKVME-PE----------------GTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFG--  390 (421)
T ss_dssp             HHHHHHHHHHHHHHCSCEEEC-CS----------------BSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGC--
T ss_pred             HHHHHHHHHHHHhCCCceEeC-CC----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhC--
Confidence            788888999998777765432 20                223445666421 12345666663 5688887664321  


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                        +                 ..++.+||+++.  +++.++.+.+.|
T Consensus       391 --~-----------------~~~~~iRi~~~~--~~~~i~~~l~~l  415 (421)
T 3l8a_A          391 --K-----------------EGKYFARLNVAT--PKNTVQEALSRI  415 (421)
T ss_dssp             --G-----------------GGTTEEEEECCS--CHHHHHHHHHHH
T ss_pred             --C-----------------CCCCEEEEEecC--CHHHHHHHHHHH
Confidence              0                 135789999994  334344444443

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.80  E-value=2.6e-18  Score=160.16  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=163.3

Q ss_pred             chHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccch-HHHHH------------------
Q 019543           55 PTRDALESLLAKLDKA---DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGT-DRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~-~~~~~------------------  111 (339)
                      +..+++++++++++|.   +.+++++||++|+.++ .++++| +.|++..+.|... .....                  
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  121 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFY  121 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCC
Confidence            5678999999999986   3477888889999864 457777 5565555544411 11111                  


Q ss_pred             ----------------------------HHHHHHHHHc-CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCce
Q 019543          112 ----------------------------RKIAEMAHAH-GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 ----------------------------~~I~~la~~~-g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                                  ++|.++|++| |+++|+|++|+.+........ +|++++|+||+++++.+  
T Consensus       122 ~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~~~~G--  198 (362)
T 3ffr_A          122 PADITVPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFGLPAG--  198 (362)
T ss_dssp             GGGCCCCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTCCCSC--
T ss_pred             HHHHhccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccCCCCc--
Confidence                                        9999999999 999999999987754322222 79999999999995543  


Q ss_pred             EEEEEEcChhHHHHHHHHHH--------------------hc-CCCCChHHHHHHHhchh---h--HHHHHHHHHHHHHH
Q 019543          163 AGVLAVKGERLAKELYFLQN--------------------AE-GSGLAPFDCWICLRGVK---T--MALRVEKQQDNAQK  216 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~--------------------~~-~~~~~~~~a~~~~~~l~---~--~~~r~~~~~~~a~~  216 (339)
                      +|+++.++ ++.++++....                    .. ....+....+.+...++   .  ++.+.++..+++++
T Consensus       199 ~g~~~~~~-~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  277 (362)
T 3ffr_A          199 LGVWILND-RVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAAL  277 (362)
T ss_dssp             CEEEEEEH-HHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eEEEEECH-HHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            36777764 67777765442                    00 22333333222222332   1  46677888899999


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.+.|+++|+++.+. |.    +.        ...+.+++|.+.+  ...+|.+.|...|+.++.|.      .+     
T Consensus       278 l~~~L~~~~g~~~~~-~~----~~--------~~~~~~~~~~~~~--~~~~~~~~l~~~gi~~~~g~------~~-----  331 (362)
T 3ffr_A          278 INTYIESSKVFSFGV-ED----AK--------LRSMTTIVANTTM--LPGEINKILEPFDMAVGAGY------GS-----  331 (362)
T ss_dssp             HHHHHHHCSSEEESS-SC----GG--------GBCSSEEEEEESS--CHHHHHHHHGGGTEEEEECS------GG-----
T ss_pred             HHHHHHHccCceecc-CC----hh--------hcCCceEEEecCC--CHHHHHHHHHHCCeEEecCc------cc-----
Confidence            999999988865321 11    00        1135788888865  56678888887788887552      11     


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                  ..++.||||++..++++.++++.++|++
T Consensus       332 ------------~~~~~iRis~~~~~~~e~i~~l~~~l~~  359 (362)
T 3ffr_A          332 ------------KKETQIRIANFPAHSLEQVHKLVQTLKE  359 (362)
T ss_dssp             ------------GTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------------cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                        1347899999998888889999998875

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.80  E-value=1.3e-18  Score=165.23  Aligned_cols=246  Identities=23%  Similarity=0.186  Sum_probs=161.1

Q ss_pred             CCchHHHHHH----HHHhHhCCCeE-EEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH-------------------
Q 019543           53 GNPTRDALES----LLAKLDKADRA-LCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD-------------------  107 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~~~-l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~-------------------  107 (339)
                      +++..+.+|+    ++++++|.+.. ++++||++|+.+++ .++++||+|+++++.|++..                   
T Consensus        63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  142 (407)
T 2dkj_A           63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYG  142 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecC
Confidence            4565556664    99999998876 56789998987644 47899999999988765441                   


Q ss_pred             --------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----CcccCCCeEEE
Q 019543          108 --------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVM  148 (339)
Q Consensus       108 --------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~~~~~Di~~  148 (339)
                                    ..+.                    ++|.++|++||+++|+|++|+.|...     .... ..|+++
T Consensus       143 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~  221 (407)
T 2dkj_A          143 VRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVT  221 (407)
T ss_dssp             CCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEE
T ss_pred             CCcccCccCHHHHHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEE
Confidence                          0000                    99999999999999999999764321     1122 379999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHHHh
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      +|+||+++|+   .||+++++++++.+.++.....+. ...++...+.+...+     +.++...++..++.+++.+.|+
T Consensus       222 ~s~sK~l~g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~  298 (407)
T 2dkj_A          222 STTHKTLRGP---RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELA  298 (407)
T ss_dssp             EESSGGGCCC---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCCCC---CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999853   368998874577777776553332 233443222222222     3346667778888999999998


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      ++ +++.+ .|               .+.++++++.+.+. ....++.+.|...|+.++.|....         |...+ 
T Consensus       299 ~~-g~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~---------~~~~~-  351 (407)
T 2dkj_A          299 RR-GYRIV-TG---------------GTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPF---------DPKPP-  351 (407)
T ss_dssp             HT-TCEEG-GG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTT---------CSSCT-
T ss_pred             hC-Cceee-cC---------------CCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcc---------ccccc-
Confidence            87 54321 11               12467888887521 134567777777788887664210         10000 


Q ss_pred             HHHHhCCCCCCeEEEEec--------cCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg--------~e~~~~li~~l~~al~~  336 (339)
                             ..++.+|+|++        .++.+.+++.|.+++++
T Consensus       352 -------~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          352 -------RVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             -------TTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             -------cCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence                   12467999984        45667777777776654

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.80  E-value=8.6e-19  Score=166.31  Aligned_cols=239  Identities=15%  Similarity=0.145  Sum_probs=158.0

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hc-------CCCCEEEEcCCCccchHH----------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LL-------GTGEEIVAGDDLYGGTDR----------  108 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll-------~~GD~Vi~~~~~y~~~~~----------  108 (339)
                      +.+++..++..++|++++++++|.+++++++||++|+..++. +.       .++|+|++.++.|++...          
T Consensus        70 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~  149 (395)
T 3nx3_A           70 HTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEK  149 (395)
T ss_dssp             CCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHH
T ss_pred             ccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcc
Confidence            445556688999999999999999999999999999985443 32       468999999988865320          


Q ss_pred             ---------------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCc
Q 019543          109 ---------------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLS  137 (339)
Q Consensus       109 ---------------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~  137 (339)
                                           .++                             ++|.++|++||+++|+||+|. .|..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g  229 (395)
T 3nx3_A          150 YQKPFKPLISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG  229 (395)
T ss_dssp             HHGGGCSCCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             cccccCCCCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC
Confidence                                 011                             889999999999999999986 33222


Q ss_pred             Cc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhH-HHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHH
Q 019543          138 RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEK  209 (339)
Q Consensus       138 ~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l-~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~  209 (339)
                      ..     .....|++  |+||++++ | ...|++++++ ++ .+.++......+...+++.++.+...++.+  +...++
T Consensus       230 ~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~  304 (395)
T 3nx3_A          230 KFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQ-KVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILEN  304 (395)
T ss_dssp             SSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECH-HHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchhHHhcCCCCCEE--EecccccC-C-CceEEEEEch-hhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHH
Confidence            11     12234554  67899986 4 4567887765 55 555543222234556777777666666543  233455


Q ss_pred             HHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcc
Q 019543          210 QQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  285 (339)
Q Consensus       210 ~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~  285 (339)
                      .+++.+++.+.|++    ++.+..+                  ++.+.+++|.+.+...+.++.+.|...|+.++.+   
T Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---  363 (395)
T 3nx3_A          305 VNKLTPYLEQSLDELINEFDFCKKR------------------KGLGFMQGLSLDKSVKVAKVIQKCQENALLLISC---  363 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEECTTSCHHHHHHHHHHTTEECEEE---
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEE------------------EeEEEEEEEEeCCcchHHHHHHHHHHCCCEEecC---
Confidence            55566666665543    3433211                  2256788998865445667888887777765532   


Q ss_pred             cceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          286 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       286 s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                              .++.+||++++..+++.++.+.++|+
T Consensus       364 ------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~  389 (395)
T 3nx3_A          364 ------------------------GENDLRFLPPLILQKEHIDEMSEKLR  389 (395)
T ss_dssp             ------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence                                    23689999887766665555555554

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.80  E-value=9e-18  Score=158.37  Aligned_cols=222  Identities=15%  Similarity=0.046  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------------  111 (339)
                      ...+|++.++++++.+  ++++++||++|+.+++ .++++||+|+++++.|++....++                     
T Consensus        62 ~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d  141 (381)
T 1v2d_A           62 GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD  141 (381)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECC
T ss_pred             CCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcC
Confidence            5789999999999864  7888889999998654 578999999999988876542211                     


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c-c--cCCCeEEEeccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P-L--ELGADIVMHSAT  152 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~-~--~~~~Di~~~S~s  152 (339)
                                                       ++|+++|++||+++|+|++|+.+.++.   . .  ..+.|++++|+|
T Consensus       142 ~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~s  221 (381)
T 1v2d_A          142 LSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAG  221 (381)
T ss_dssp             HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHH
T ss_pred             HHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeech
Confidence                                             889999999999999999997654321   1 1  236799999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh------hHHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~------~~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      |+++.+| ...|++++++ ++++.++......+...++...+.+...|+      .++...++..++.+++.+.|++. +
T Consensus       222 K~~~~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g  298 (381)
T 1v2d_A          222 KRLEATG-YRVGWIVGPK-EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-G  298 (381)
T ss_dssp             HHTTCGG-GCCEEEECCT-TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             hhcCCcc-cceEEEEeCH-HHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence            9998655 4567888865 678887766554455556654443333333      23455666778888898888874 4


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ++. ..|                ..+.++++.+.+.+    +.+.++..|+.++.|..+..  .+               
T Consensus       299 ~~~-~~~----------------~~~~~~~~~~~~~~----~~~~l~~~gi~v~~g~~~~~--~~---------------  340 (381)
T 1v2d_A          299 LRV-YVP----------------EGTYFLMAELPGWD----AFRLVEEARVALIPASAFYL--ED---------------  340 (381)
T ss_dssp             CCE-ECC----------------SBSSEEEEECTTCC----HHHHHHHTCEECEEGGGGCS--SS---------------
T ss_pred             CEe-cCC----------------CcceEEEEecChHh----HHHHHHhCCEEEecchHhCC--CC---------------
Confidence            432 212                02456777775332    33445566887765542210  00               


Q ss_pred             CCCCCCeEEEEecc
Q 019543          307 RGLTEDLVRISVGI  320 (339)
Q Consensus       307 ~g~~~~~lRisvg~  320 (339)
                        ..++.+|||++.
T Consensus       341 --~~~~~iRi~~~~  352 (381)
T 1v2d_A          341 --PPKDLFRFAFCK  352 (381)
T ss_dssp             --CCTTEEEEECCS
T ss_pred             --CCCCEEEEEeCC
Confidence              134789999997

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.80  E-value=1.8e-18  Score=162.58  Aligned_cols=254  Identities=13%  Similarity=0.067  Sum_probs=158.4

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hc----CCCCEEEEcCCCccchHHHH---H------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LL----GTGEEIVAGDDLYGGTDRLL---S------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll----~~GD~Vi~~~~~y~~~~~~~---~------------  111 (339)
                      .+..++|++.+++++|.+  ++++++||++|+.+++. +.    ++||+|+++++.|++....+   .            
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  122 (384)
T 1eg5_A           43 NLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD  122 (384)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC
Confidence            456789999999999975  78888899999986544 54    79999999999987654322   1            


Q ss_pred             ------------------------------------HHHHHHHHHcC--CEEEEeCCcCCCCCc-CcccCCCeEEEeccc
Q 019543          112 ------------------------------------RKIAEMAHAHG--ALLLVDNSIMSPVLS-RPLELGADIVMHSAT  152 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g--~~livD~a~a~g~~~-~~~~~~~Di~~~S~s  152 (339)
                                                          ++|.++|++||  ++||+|++|+.+... +....+.|++++|+|
T Consensus       123 ~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~s  202 (384)
T 1eg5_A          123 SRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAH  202 (384)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGG
T ss_pred             CCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHH
Confidence                                                99999999999  999999999865432 212346899999999


Q ss_pred             cccccCCCceEEEEEEcChhH--HHHHHHH---HHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhC
Q 019543          153 KFIAGHSDVMAGVLAVKGERL--AKELYFL---QNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l--~~~l~~~---~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      |+++.+|   .|+++++++ +  ...+...   ........++...+.+...++    .++...++..++++++.+.|++
T Consensus       203 K~~g~~G---~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~  278 (384)
T 1eg5_A          203 KFHGPKG---VGITYIRKG-VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN  278 (384)
T ss_dssp             GGTSCTT---CEEEEECTT-SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCc---eEEEEEcCC-CccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence            9977544   378888763 3  1111110   011223445544433333333    3455677778889999999987


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccccee-ccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLIS-MPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~-~p~~~~h~~~~~~  302 (339)
                       ++++. ..|.  .           .+.+.+++|.+.+. ...++.+.|...|+.++.|..+.... .|.         .
T Consensus       279 -~g~~~-~~~~--~-----------~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~---------~  333 (384)
T 1eg5_A          279 -LGAHI-ITPL--E-----------ISLPNTLSVSFPNI-RGSTLQNLLSGYGIYVSTSSACTSKDERLR---------H  333 (384)
T ss_dssp             -TTCEE-CSCT--T-----------SBCTTEEEEECTTC-CHHHHHHHHHHTTEECBC---------------------C
T ss_pred             -CCeEE-eCCc--c-----------cCCCCEEEEEeCCC-CHHHHHHHHhhCCeEEeccccccCCCCcch---------H
Confidence             56542 2221  0           11345777876432 34567777777899888765322110 010         1


Q ss_pred             HHHhCCCC----CCeEEEEeccCCH----HHHHHHHHHHHhc
Q 019543          303 VRQARGLT----EDLVRISVGIEDV----NDLISDLDKALRT  336 (339)
Q Consensus       303 ~~~~~g~~----~~~lRisvg~e~~----~~li~~l~~al~~  336 (339)
                      ....+|++    ++.+|||++...+    +.+++.|.+++++
T Consensus       334 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          334 VLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             HHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            12233433    4689999995444    4445555555443

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.80  E-value=3.5e-18  Score=162.63  Aligned_cols=242  Identities=14%  Similarity=0.104  Sum_probs=158.1

Q ss_pred             CchHHHHHHHHHhHhCCCe--EE-EcCcHHHHHHHH-HHhcCCCCEEEEcCCCccc--hHHHHH----------------
Q 019543           54 NPTRDALESLLAKLDKADR--AL-CFTSGMAALAAV-THLLGTGEEIVAGDDLYGG--TDRLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~--~l-~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~--~~~~~~----------------  111 (339)
                      .+..+++++++++++|.+.  .+ +++||++|+.++ ..+++|||+|+++++.|.+  ....++                
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  122 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTV  122 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCC
Confidence            4568899999999999753  44 567888999854 4589999999999998876  322222                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|++||+++|+|++|+.+... +....++|++++|++|+++|
T Consensus       123 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g  202 (416)
T 3isl_A          123 FDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSV  202 (416)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCC
T ss_pred             CCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCC
Confidence                                             99999999999999999999877543 22345789999999999776


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHH--------------------------------H------hcCCCCChHHHHHHHhc
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQ--------------------------------N------AEGSGLAPFDCWICLRG  199 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~--------------------------------~------~~~~~~~~~~a~~~~~~  199 (339)
                      +.+  .|++++++ ++++.+....                                .      ......+....+.+...
T Consensus       203 ~~g--~g~~~~~~-~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a  279 (416)
T 3isl_A          203 PSG--MAPITYNE-RVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREG  279 (416)
T ss_dssp             CSS--EEEEEECH-HHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHH
T ss_pred             CCC--eEEEEECH-HHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHH
Confidence            543  57777764 6766665211                                0      01122333332222222


Q ss_pred             hh---h--HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc
Q 019543          200 VK---T--MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY  274 (339)
Q Consensus       200 l~---~--~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~  274 (339)
                      ++   .  ++...++..++++++.+.|++. +++.. .|.             ....+.+++|.+.+.....++.+.|..
T Consensus       280 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~L~~  344 (416)
T 3isl_A          280 VRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLF-GDD-------------SCKMPVVTCVEIPGGIDGESVRDMLLA  344 (416)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC-SCG-------------GGBCTTEEEEECCTTCCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEec-cCc-------------cccCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            22   2  4566777778888999999874 44321 110             011357888887533345677887755


Q ss_pred             c-eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc----CC-HHHHHHHHHHHHhc
Q 019543          275 F-SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----ED-VNDLISDLDKALRT  336 (339)
Q Consensus       275 ~-~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~-~~~li~~l~~al~~  336 (339)
                      . |+.++.|.      .+                 ..++.+|||++.    ++ .+.+++.|.+++++
T Consensus       345 ~~gi~v~~g~------~~-----------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          345 QFGIEIASSF------GP-----------------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             HHCEECBCCC------ST-----------------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             hCCEEEecCC------CC-----------------CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            4 88887653      11                 145789999933    23 45555666665554

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.79  E-value=4.4e-18  Score=161.83  Aligned_cols=242  Identities=16%  Similarity=0.147  Sum_probs=159.3

Q ss_pred             hHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHH-----------------
Q 019543           56 TRDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRL-----------------  109 (339)
Q Consensus        56 ~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~-----------------  109 (339)
                      ...+|++.+++++    |    .++++++++|++|+.+++ .++++||+|+++.+.|++....                 
T Consensus        76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~  155 (407)
T 2zc0_A           76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDG  155 (407)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCCC
Confidence            4678888888887    7    346777777799998654 4789999999999887654311                 


Q ss_pred             ----------H-------H-----------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCc---c-cC--
Q 019543          110 ----------L-------S-----------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRP---L-EL--  142 (339)
Q Consensus       110 ----------~-------~-----------------------~~I~~la~~~g~~livD~a~a~g~~-~~~---~-~~--  142 (339)
                                -       +                       ++|+++|++||+++|+|++|+.+.. +..   + ..  
T Consensus       156 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  235 (407)
T 2zc0_A          156 MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN  235 (407)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred             CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC
Confidence                      1       1                       5999999999999999999986543 111   1 11  


Q ss_pred             -CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------HHHHHHHHHHHH
Q 019543          143 -GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MALRVEKQQDNA  214 (339)
Q Consensus       143 -~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------~~~r~~~~~~~a  214 (339)
                       +.+++++|+||+++ +| ..+|+++++ +++.+.++......+...++....++...++.       ++...++..++.
T Consensus       236 ~~~~i~~~s~sK~~~-~G-~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  312 (407)
T 2zc0_A          236 EGRVIVAGTLSKVLG-TG-FRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKR  312 (407)
T ss_dssp             SCCEEEEEESTTTTC-TT-SCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHH
T ss_pred             CCCEEEEcccccccC-CC-cceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence             34689999999999 44 457888886 57888777665444444566554444333332       233455566777


Q ss_pred             HHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceeccc
Q 019543          215 QKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPC  292 (339)
Q Consensus       215 ~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~  292 (339)
                      +++.+.|++ .+++.. ..|                ..+.++++.+.+.....++.+.|... |+.++.|..+..   + 
T Consensus       313 ~~l~~~L~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~---~-  371 (407)
T 2zc0_A          313 DIMLKALENHLPNAEF-TKP----------------IAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYT---D-  371 (407)
T ss_dssp             HHHHHHHHHHCTTSCB-CCC----------------SBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCS---S-
T ss_pred             HHHHHHHHHhCCCCEE-ecC----------------CCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccC---C-
Confidence            888888876 455432 112                13457788875322345677777666 888876643210   0 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEecc---CCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~---e~~~~li~~l~~al~~  336 (339)
                                     +..++.+|||++.   ++.+..++.|.+++++
T Consensus       372 ---------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~  403 (407)
T 2zc0_A          372 ---------------ESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE  403 (407)
T ss_dssp             ---------------SCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence                           0134789999986   4456666777766654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.79  E-value=2e-18  Score=161.02  Aligned_cols=240  Identities=18%  Similarity=0.164  Sum_probs=156.2

Q ss_pred             chHHHHHHHHHhHhCCC----eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCC-ccchH-HHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD----RALCFTSGMAALAAVT-HLLGTGEEIVAGDDL-YGGTD-RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~----~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~-y~~~~-~~~~----------------  111 (339)
                      +..+++++++++++|.+    ++++++||++|+.+++ .++++||+|++.++. |+... ....                
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  116 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  116 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCC
Confidence            67899999999999943    5888899999998654 477899998776543 33221 1111                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-cCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++|+|++|+.+.....+ ..+.|++++|+||+++
T Consensus       117 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~  196 (366)
T 1m32_A          117 PDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ  196 (366)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             CCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCccccc
Confidence                                              99999999999999999999876543222 3468999999999986


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHH------------HHh--c-C---CCCChHHHHHHHhchhh------HHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFL------------QNA--E-G---SGLAPFDCWICLRGVKT------MALRVEKQQD  212 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~------------~~~--~-~---~~~~~~~a~~~~~~l~~------~~~r~~~~~~  212 (339)
                      ++.+  .|++++++ ++.+.++..            ...  . +   ...++...+.+...++.      ++...++.++
T Consensus       197 ~~~g--~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  273 (366)
T 1m32_A          197 GVPG--FAFVIARE-QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQ  273 (366)
T ss_dssp             CCSS--EEEEEEEH-HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCc--eEEEEECH-HHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHH
Confidence            5532  38888875 555443221            000  0 1   24454443333333333      3456677778


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceec
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      +++++.+.|+++ +++. ..|.   .          ...+.+++|.+.+  .....++.+.|...|+.++.|..      
T Consensus       274 ~~~~l~~~L~~~-~~~~-~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~------  332 (366)
T 1m32_A          274 NQRSLVAGMRAL-GFNT-LLDD---E----------LHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV------  332 (366)
T ss_dssp             HHHHHHHHHHHT-TCCB-SSCG---G----------GBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC------
T ss_pred             HHHHHHHHHHHC-CCee-ccCc---h----------hcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcC------
Confidence            889999999876 4431 1110   0          0123488888753  23356677777777887765431      


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +                  .++.+|+|++..++++.++.+.++|++
T Consensus       333 ~------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~  360 (366)
T 1m32_A          333 S------------------QSDCFRIGNIGEVYAADITALLTAIRT  360 (366)
T ss_dssp             S------------------SSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred             C------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1                  236899999987666666666666653

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.79  E-value=4.7e-18  Score=162.22  Aligned_cols=240  Identities=9%  Similarity=0.052  Sum_probs=153.8

Q ss_pred             chHHHHHHHHHhHhC--------------CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH--------
Q 019543           55 PTRDALESLLAKLDK--------------ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g--------------~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      ....+|++.++++++              .++++++++|++|+.+++ .+++|||+|+++++.|++....+.        
T Consensus        75 ~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~  154 (416)
T 1bw0_A           75 VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHF  154 (416)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEE
Confidence            346788888888877              457888888899998644 578999999999998887653322        


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC-------
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR-------  138 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~-------  138 (339)
                                                                   ++|+++|++||++||+|++|+...+ +.       
T Consensus       155 v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  234 (416)
T 1bw0_A          155 YNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT  234 (416)
T ss_dssp             EEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCC
T ss_pred             eecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCcc
Confidence                                                         8899999999999999999976322 11       


Q ss_pred             cc-cC---CCeEEEeccccccccCCCceEEEEEEcCh-hHHHHHHH-HHH--hcCCCCChHHHHHHHhchh-----hHHH
Q 019543          139 PL-EL---GADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYF-LQN--AEGSGLAPFDCWICLRGVK-----TMAL  205 (339)
Q Consensus       139 ~~-~~---~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~l~~~l~~-~~~--~~~~~~~~~~a~~~~~~l~-----~~~~  205 (339)
                      .+ ..   +.+++++|+||+++.+| ...|+++++++ ++.+.+.. .+.  ......++...+.+...|+     .++.
T Consensus       235 ~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  313 (416)
T 1bw0_A          235 SVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQ  313 (416)
T ss_dssp             CTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHH
Confidence            11 11   22588899999998765 44578877764 34443331 111  1233456655544444343     3456


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----HHHHHHHccC-Ccceeec
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----ALSKHVVETT-KYFSITV  279 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----~~~~~~~~~L-~~~~i~v  279 (339)
                      ..++.+++.+++.+.|+++|++.. ..|.                .+..+++.+...     ....++++.| +..|+.+
T Consensus       314 ~~~~~~~~~~~l~~~L~~~~g~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v  376 (416)
T 1bw0_A          314 IVAKIEESAMYLYNHIGECIGLAP-TMPR----------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQV  376 (416)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTEEE-CCCC----------------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEEC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcc-cCCC----------------eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEE
Confidence            677778889999999998877642 2221                245666666421     2345677766 4678887


Q ss_pred             ccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHh
Q 019543          280 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALR  335 (339)
Q Consensus       280 ~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~  335 (339)
                      +.|..+.                       .++.+|||++..  +.++.++.|.++++
T Consensus       377 ~~g~~f~-----------------------~~~~iRis~~~~~e~l~~~l~~l~~~l~  411 (416)
T 1bw0_A          377 LPGTIFH-----------------------APGFTRLTTTRPVEVYREAVERIKAFCQ  411 (416)
T ss_dssp             EEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ecccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence            7554211                       136899999742  22333444444443

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.79  E-value=7.7e-18  Score=161.67  Aligned_cols=225  Identities=14%  Similarity=0.099  Sum_probs=149.3

Q ss_pred             chHHHHHHHHHhHh----CC--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHH-----------------H
Q 019543           55 PTRDALESLLAKLD----KA--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLL-----------------S  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~-----------------~  111 (339)
                      +...+|++.+++++    +.  +.+++++++++++.++..+++|||+|+++++.|.+....+                 +
T Consensus        98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  177 (432)
T 3ei9_A           98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGN  177 (432)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETT
T ss_pred             CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHHHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCc
Confidence            45678999999985    43  3566666667888776678899999999999987654321                 1


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---cc-c---
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PL-E---  141 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~-~---  141 (339)
                                                                 ++|+++|++||++||+|++|+.+....   .+ .   
T Consensus       178 ~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~  257 (432)
T 3ei9_A          178 IEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPG  257 (432)
T ss_dssp             CEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTT
T ss_pred             eEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCC
Confidence                                                       788889999999999999998543321   11 1   


Q ss_pred             -CCCeEEEeccccccccCCCceEEEEEEcChh-------HHHHHHHHHHhcCCCCChHHHHHHHhch-----hhHHHHHH
Q 019543          142 -LGADIVMHSATKFIAGHSDVMAGVLAVKGER-------LAKELYFLQNAEGSGLAPFDCWICLRGV-----KTMALRVE  208 (339)
Q Consensus       142 -~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~-------l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----~~~~~r~~  208 (339)
                       .+.+++++|+||++|.+|. ..|+++++++.       +.+.+...........++....++...+     +.++...+
T Consensus       258 ~~~~~i~~~S~SK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  336 (432)
T 3ei9_A          258 AEEVAMETASFSNYAGFTGV-RLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAMHKVIG  336 (432)
T ss_dssp             GGGTEEEEEESHHHHCTTTT-CCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEecchhccCCccc-ceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHH
Confidence             1346999999999986664 45788877643       1566665554444455665444333333     33566677


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccc
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSL  287 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~  287 (339)
                      +..++.+++.+.|+++ ++.... |                ..+.++++.+++. ...++++.| +..|+.++.|..+. 
T Consensus       337 ~~~~~~~~l~~~L~~~-g~~~~~-~----------------~~~~~~~~~~~~~-~~~~~~~~ll~~~gv~v~~g~~f~-  396 (432)
T 3ei9_A          337 FYKENTNIIIDTFTSL-GYDVYG-G----------------KNAPYVWVHFPNQ-SSWDVFAEILEKTHVVTTPGSGFG-  396 (432)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCEEE-C----------------SSSSEEEEECTTS-CHHHHHHHHHHHHCEECEEGGGGC-
T ss_pred             HHHHHHHHHHHHHHHC-CceecC-C----------------CcceEEEEECCCC-CHHHHHHHHHHHCCEEEeCchHhC-
Confidence            7888899999999876 443221 1                1356788888632 234555554 34588877664321 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEecc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI  320 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~  320 (339)
                         +                 ..++.+|||++.
T Consensus       397 ---~-----------------~~~~~iRis~~~  409 (432)
T 3ei9_A          397 ---P-----------------GGEGFVRVSAFG  409 (432)
T ss_dssp             ---G-----------------GGTTEEEEECCS
T ss_pred             ---C-----------------CCCCEEEEEecC
Confidence               1                 035789999865

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.79  E-value=9.1e-19  Score=165.85  Aligned_cols=234  Identities=14%  Similarity=0.161  Sum_probs=160.2

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcCC----------CCEEEEcCCCccchH-------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLGT----------GEEIVAGDDLYGGTD-------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~~----------GD~Vi~~~~~y~~~~-------------  107 (339)
                      +.++..+++++++++++|.+++++++||++|+.+++. +..+          ||+|++..+.|++..             
T Consensus        75 ~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~  154 (392)
T 3ruy_A           75 FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYK  154 (392)
T ss_dssp             SEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTT
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhc
Confidence            4568899999999999999999999999999975443 3333          789999988885321             


Q ss_pred             ------------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc
Q 019543          108 ------------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP  139 (339)
Q Consensus       108 ------------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~  139 (339)
                                        ..++                             ++|.++|++||+++|+|++|+ .+..+..
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~  234 (392)
T 3ruy_A          155 RGFGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKV  234 (392)
T ss_dssp             TTCCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSS
T ss_pred             cccCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccc
Confidence                              0111                             889999999999999999995 3322221


Q ss_pred             c-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHH
Q 019543          140 L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQD  212 (339)
Q Consensus       140 ~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~  212 (339)
                      .     ....|++  |+||+++| |...+|++++++ ++.+.+.......+...++..++.+...++.+  +...++.++
T Consensus       235 ~~~~~~~~~~d~~--~~SK~l~g-G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  310 (392)
T 3ruy_A          235 FACDWDNVTPDMY--ILGKALGG-GVFPISCAAANR-DILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQ  310 (392)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEECH-HHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hhhhccCCCCCEE--EEchhhhC-ChhhhEEEEECH-HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            1     2335766  56799986 314567888864 56655544333334566777777666666654  345666778


Q ss_pred             HHHHHHHHHhCCC--CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceec
Q 019543          213 NAQKIAEFLASHP--RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~--~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      +.+++.+.|+++.  .+..+                  .+.++++++.+++  ...++.+.|...|+.++.|        
T Consensus       311 ~~~~l~~~L~~~~~~~~~~~------------------~~~g~~~~~~~~~--~~~~l~~~l~~~gi~v~~~--------  362 (392)
T 3ruy_A          311 LGEKLVGQLKEIDNPMITEV------------------RGKGLFIGIELNE--PARPYCEQLKAAGLLCKET--------  362 (392)
T ss_dssp             HHHHHHHHHTTCCCTTEEEE------------------EEETTEEEEEESS--CSHHHHHHHHTTTEECCCB--------
T ss_pred             HHHHHHHHHHHhcCCCceEE------------------EeeeeEEEEEEcc--hHHHHHHHHHHCCcEEecC--------
Confidence            8888999998763  22111                  1246788888754  4456777777778776533        


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                         .++.+|++++...+++.++.+.++|++
T Consensus       363 -------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~  389 (392)
T 3ruy_A          363 -------------------HENVIRIAPPLVISEEDLEWAFQKIKA  389 (392)
T ss_dssp             -------------------TTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             -------------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                               136799998877777766766666654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.79  E-value=4.4e-18  Score=160.76  Aligned_cols=242  Identities=13%  Similarity=0.056  Sum_probs=155.4

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--HHHH------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--RLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--~~~~------------------  111 (339)
                      +..+++++.+++++|.+  .+++++||++|+.+++ .+++|||+|+++++.|++..  .+..                  
T Consensus        42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d  121 (392)
T 2z9v_A           42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAID  121 (392)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCC
Confidence            45789999999999974  6777788899998654 47899999999988876542  1111                  


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|++||+++|+|++|+.|... +....+.|++++|+||+++++
T Consensus       122 ~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~  201 (392)
T 2z9v_A          122 PQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAP  201 (392)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCC
T ss_pred             HHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCC
Confidence                                            99999999999999999999876542 222346899999999988765


Q ss_pred             CCceEEEEEEcChhHHHHHHHHH--------------------HhcCCCCChHHHHHHHhchhh-----HHHHHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYFLQ--------------------NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDN  213 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~~--------------------~~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~  213 (339)
                      .+.  |++++++ ++++.++...                    .......+....+.+...++.     ++...++..++
T Consensus       202 ~g~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  278 (392)
T 2z9v_A          202 PGL--TMMGVSE-RAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALT  278 (392)
T ss_dssp             SCC--EEEEECH-HHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             Cce--eEEEECH-HHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            332  7887764 6666665311                    011122333322222222322     34556777788


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~  292 (339)
                      ++++.+.|+++ +++. ..|.   ..         ...+++++|.+++.....++.+.|... |+.++.|..      + 
T Consensus       279 ~~~l~~~L~~~-g~~~-~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~------~-  337 (392)
T 2z9v_A          279 AKAMRAGVTAM-GLSV-WAAS---DS---------IASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRG------E-  337 (392)
T ss_dssp             HHHHHHHHHHT-TCCB-SSSS---GG---------GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCG------G-
T ss_pred             HHHHHHHHHHc-CCee-ccCC---cc---------ccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCC------C-
Confidence            88898988876 5432 1111   00         013568888875322345677777765 888775531      1 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEe-cc----CCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISV-GI----EDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisv-g~----e~~~~li~~l~~al~~  336 (339)
                                      ..++.+|||+ +.    ++.+.+++.|.+++++
T Consensus       338 ----------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          338 ----------------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA  370 (392)
T ss_dssp             ----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence                            0347899995 52    3344445555555543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.79  E-value=4.9e-18  Score=157.17  Aligned_cols=230  Identities=13%  Similarity=0.078  Sum_probs=152.3

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .++...+|++.+++++|.+  +.++++++++++.+++..+ +||+|+++++.|.+....++                   
T Consensus        49 ~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~  127 (337)
T 3p1t_A           49 PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDP  127 (337)
T ss_dssp             CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCH
T ss_pred             CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCH
Confidence            4678899999999999975  4555555578888766655 99999999999987765443                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--ccc-CCCeEEEeccccccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLE-LGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~-~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                 ++|.++|+++++ +|+|++|+......  ... .+.+++++|+||+++.+|. 
T Consensus       128 ~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-  205 (337)
T 3p1t_A          128 NDLAQVSRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGL-  205 (337)
T ss_dssp             HHHTTCCTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTT-
T ss_pred             HHHHhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcch-
Confidence                                       899999999997 66799997422111  111 2457999999999986554 


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch---hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCC
Q 019543          162 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV---KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH  238 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l---~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~  238 (339)
                      ..|++++++ ++.+.++...  .....++.....+...+   +.+..++++..++.+++.+.|+++ ++..  +|     
T Consensus       206 r~G~~~~~~-~~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~-----  274 (337)
T 3p1t_A          206 RLGALFGPS-ELIAAMKRKQ--WFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GYRV--AS-----  274 (337)
T ss_dssp             CCEEEECCH-HHHHHHHTTS--CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TCCB--CC-----
T ss_pred             heEEEEeCH-HHHHHHHhhc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cCEE--CC-----
Confidence            457887764 6777665432  22344554433333333   345566777777888899999876 4321  12     


Q ss_pred             CchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          239 PGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                                 ..++++++...+.+   .+.+.|+..|+.++.|..+.                       .++.+|||+
T Consensus       275 -----------~~~~~~~~~~~~~~---~~~~~l~~~gi~v~~g~~~~-----------------------~~~~iRis~  317 (337)
T 3p1t_A          275 -----------SEANFVLVENAAGE---RTLRFLRERGIQVKDAGQFG-----------------------LHHHIRISI  317 (337)
T ss_dssp             -----------CSSSEEEEECTTTH---HHHHHHHHTTEECEEGGGGT-----------------------CCSEEEEEC
T ss_pred             -----------CCCeEEEEEcCCHH---HHHHHHHHCCeEEEECccCC-----------------------CCCeEEEec
Confidence                       14567888765433   34445666788887664321                       136899999


Q ss_pred             ccCCHHHHHHHHHHHHhc
Q 019543          319 GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       319 g~e~~~~li~~l~~al~~  336 (339)
                      +.   ++.++.|.++|++
T Consensus       318 ~~---~~~~~~l~~al~~  332 (337)
T 3p1t_A          318 GR---EEDNDRLLAALAE  332 (337)
T ss_dssp             CC---HHHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHHH
Confidence            94   3444555555553

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.79  E-value=5.9e-18  Score=161.20  Aligned_cols=245  Identities=19%  Similarity=0.163  Sum_probs=151.5

Q ss_pred             CCchHHHHHH----HHHhHhCCCeE-EEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH------------------
Q 019543           53 GNPTRDALES----LLAKLDKADRA-LCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR------------------  108 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~~~-l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~------------------  108 (339)
                      +++.++.+|+    .+++++|.+.. ++++||++|+.++ ..+++|||+|+++++.|++...                  
T Consensus        65 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  144 (417)
T 3n0l_A           65 GCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYG  144 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEEC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEecc
Confidence            3455566665    88999998876 8899999999854 4589999999999987654221                  


Q ss_pred             --------------HHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCC-----cCcccCCCeEEEe
Q 019543          109 --------------LLS--------------------RKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMH  149 (339)
Q Consensus       109 --------------~~~--------------------~~I~~la~~~g~~livD~a~a~g~~-----~~~~~~~~Di~~~  149 (339)
                                    .+.                    ++|.++|++||++||+|++|+.|..     ...+. ..|++++
T Consensus       145 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~  223 (417)
T 3n0l_A          145 VELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSS  223 (417)
T ss_dssp             CCTTSSCCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEE
T ss_pred             CCCCCCcCHHHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEe
Confidence                          000                    9999999999999999999865533     11222 4699999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHH-HHH--HHhc-h-hhHHHHHHHHHHHHHHHHHHHhC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFD-CWI--CLRG-V-KTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~-a~~--~~~~-l-~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      |+||+++|+   .||+++++++++.+.++....... ...++.. +++  ++.. + +.+..+.++..++++++.+.|++
T Consensus       224 s~sK~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (417)
T 3n0l_A          224 TTHKTLRGP---RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD  300 (417)
T ss_dssp             ESSTTTCSC---SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCccccCCC---CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999653   378999886677777765543221 1222222 221  1111 1 34567777888888999999987


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                       .++..+. +               ...++++++.+.+. .....+.+.|+..|+.++.+... ....|.          
T Consensus       301 -~g~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~-~~~~~~----------  352 (417)
T 3n0l_A          301 -RKFKLVS-D---------------GTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVP-GEIRSP----------  352 (417)
T ss_dssp             -TTCEEGG-G---------------SCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCT-TCCSCT----------
T ss_pred             -CCceecc-C---------------CCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccC-CCCccc----------
Confidence             4443211 1               12356777776421 12344555566678877643210 000010          


Q ss_pred             HHHhCCCCCCeEEEEecc--------CCHHHHHHHHHHHHh
Q 019543          303 VRQARGLTEDLVRISVGI--------EDVNDLISDLDKALR  335 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~--------e~~~~li~~l~~al~  335 (339)
                            ..+..+|++...        ++.+.+++.|.++++
T Consensus       353 ------~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~  387 (417)
T 3n0l_A          353 ------FITSGLRLGTPALTARGFKEKEMEIVSNYIADILD  387 (417)
T ss_dssp             ------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence                  134679998752        555666666666664

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.79  E-value=1.4e-18  Score=163.62  Aligned_cols=234  Identities=15%  Similarity=0.091  Sum_probs=155.7

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCC-------------CCEEEEcCCCccchHHHHH------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGT-------------GEEIVAGDDLYGGTDRLLS------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~-------------GD~Vi~~~~~y~~~~~~~~------  111 (339)
                      .+..+++++++++++|.+  +.++++||++|+.+++ .+..+             ||+|+++++.|.++...+.      
T Consensus        68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~  147 (397)
T 3f9t_A           68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEY  147 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCcee
Confidence            345678999999999875  5588999999997544 45554             9999999999887654332      


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cC-------
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL---SR-------  138 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~---~~-------  138 (339)
                                                                 ++|.++|++||+++|+|++|+.+..   ..       
T Consensus       148 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~  227 (397)
T 3f9t_A          148 IYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGV  227 (397)
T ss_dssp             EEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTC
T ss_pred             EEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccc
Confidence                                                       9999999999999999999975432   11       


Q ss_pred             --cccC--CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc---------CCCC--ChHHHHHHHhch--h
Q 019543          139 --PLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE---------GSGL--APFDCWICLRGV--K  201 (339)
Q Consensus       139 --~~~~--~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~---------~~~~--~~~~a~~~~~~l--~  201 (339)
                        +...  ++|+++.|++|+++++.  ..|+++++++.+.+.++......         ++..  +....+.++..+  .
T Consensus       228 ~~~~~~~~~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  305 (397)
T 3f9t_A          228 NYKFDFSLGVDSITIDPHKMGHCPI--PSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGRE  305 (397)
T ss_dssp             CCCCSGGGTCSEEECCTTTTTCCCS--SCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCeEEEccccccCCCC--CceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHH
Confidence              1111  78999999999997543  24566666655544432211111         1111  223333333322  3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          202 TMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      .++.+.++..++++++.+.|+++ ++..+. |                ..+++++|.+.+   ..++.+.|...|+.++.
T Consensus       306 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~----------------~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~  364 (397)
T 3f9t_A          306 GQRKIVNECMENTLYLYKKLKEN-NFKPVI-E----------------PILNIVAIEDED---YKEVCKKLRDRGIYVSV  364 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-TCCBSS-C----------------CSSSEEEEECTT---HHHHHHHHHHTTCBCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-CCEEEc-C----------------CCccEEEEEeCC---HHHHHHHHHhCCeEEec
Confidence            45667777888899999999887 543221 1                146788888765   34566667666776654


Q ss_pred             CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          282 GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       282 G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      |.                          .++.+||+++...+++.++.+.++|++
T Consensus       365 ~~--------------------------~~~~~Ri~~~~~~~~e~i~~~~~~l~~  393 (397)
T 3f9t_A          365 CN--------------------------CVKALRIVVMPHIKREHIDNFIEILNS  393 (397)
T ss_dssp             CS--------------------------SSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             cC--------------------------CCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence            32                          136899999987777777777777654

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.78  E-value=5.1e-18  Score=162.80  Aligned_cols=241  Identities=14%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             hHHHHHHHHHhHh----C---C--CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHH-----------------
Q 019543           56 TRDALESLLAKLD----K---A--DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDR-----------------  108 (339)
Q Consensus        56 ~~~~le~~la~~~----g---~--~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~-----------------  108 (339)
                      ...+|++.+++++    |   .  ++++++++|++|+.+++ .+++|||+|+++.+.|.+...                 
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~  165 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD  165 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC
Confidence            4567888888877    7   2  35666667789997544 578999999999987754321                 


Q ss_pred             ---------HH----------H-----------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---cc--
Q 019543          109 ---------LL----------S-----------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---PL--  140 (339)
Q Consensus       109 ---------~~----------~-----------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~~--  140 (339)
                               .+          +                       ++|+++|++||+++|+|++|+.+.+ +.   .+  
T Consensus       166 ~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  245 (425)
T 1vp4_A          166 GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK  245 (425)
T ss_dssp             EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH
T ss_pred             CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH
Confidence                     00          2                       6899999999999999999986543 11   11  


Q ss_pred             --cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHHHHHHHHH
Q 019543          141 --ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEKQQD  212 (339)
Q Consensus       141 --~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~  212 (339)
                        ..+.+++++|+||+++ +| ...|+++++ +++++.++.....++...++...+++...|+.      ++...++..+
T Consensus       246 ~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  322 (425)
T 1vp4_A          246 IGGPERVVLLNTFSKVLA-PG-LRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRR  322 (425)
T ss_dssp             HHCTTTEEEEEESTTTTC-GG-GCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHH
T ss_pred             hCCCCCEEEEeccccccc-cc-cceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence              1245799999999998 54 567888887 47888887665544444566655555444433      3444555667


Q ss_pred             HHHHHHHHHhCC-C---CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccce
Q 019543          213 NAQKIAEFLASH-P---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       213 ~a~~l~~~L~~~-~---~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      +.+++.+.|+++ +   ++.. ..|                +.+.++++.+.+.....++++.|...|+.++.|..+.. 
T Consensus       323 ~~~~l~~~L~~~~~~~~g~~~-~~~----------------~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~-  384 (425)
T 1vp4_A          323 KRTVMLNALEEYFSDIPGVKW-VKS----------------EGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKV-  384 (425)
T ss_dssp             HHHHHHHHHHHHSTTSTTCEE-CCC----------------SBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCT-
T ss_pred             HHHHHHHHHHHhCCCCCceEE-ecC----------------CccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcC-
Confidence            788888888763 4   3432 112                13567888875322234566666666887776543210 


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEeccC---CHHHHHHHHHHHHh
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGIE---DVNDLISDLDKALR  335 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e---~~~~li~~l~~al~  335 (339)
                         .               +..++.+|||++..   +.++.++.|.++++
T Consensus       385 ---~---------------~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~  416 (425)
T 1vp4_A          385 ---Y---------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVL  416 (425)
T ss_dssp             ---T---------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             ---C---------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence               0               01347899999974   34455555655554

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.78  E-value=1e-17  Score=161.57  Aligned_cols=239  Identities=16%  Similarity=0.082  Sum_probs=155.8

Q ss_pred             chHHHHHHHHHhHh----C--CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLD----K--ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~----g--~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +...+|++++++++    +  .+.+++++++++|+..+..+++|||+|+++++.|.+....+.                 
T Consensus       111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~  190 (449)
T 3qgu_A          111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIE  190 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEE
T ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeE
Confidence            44789999999997    3  346777777788988666688999999999998875542210                 


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-cc----
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-LE----  141 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~-~~----  141 (339)
                                                               ++|+++|++||+++|+|++|+......    . ..    
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~  270 (449)
T 3qgu_A          191 YMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA  270 (449)
T ss_dssp             EEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTG
T ss_pred             EEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCC
Confidence                                                     889999999999999999997643321    1 11    


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHH--------HHHHHHHhcCCCCChHHHHHHHhchh-----hHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK--------ELYFLQNAEGSGLAPFDCWICLRGVK-----TMALRVE  208 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~--------~l~~~~~~~~~~~~~~~a~~~~~~l~-----~~~~r~~  208 (339)
                      .+.++++.|+||++|.+|. ..|++++++ ++++        .+...........++...+++...++     .++...+
T Consensus       271 ~~~~i~~~s~sK~~g~~G~-r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  348 (449)
T 3qgu_A          271 DEVAIETCSFSKYAGFTGV-RLGWTVVPK-ALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIK  348 (449)
T ss_dssp             GGTEEEEEECSGGGTCTTC-CCEEEECCT-TCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             CCcEEEEecchhhcCCccc-eeEEEecCH-HHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            2457999999999986554 457888775 4443        33333333333456655444443333     3556677


Q ss_pred             HHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccc
Q 019543          209 KQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSL  287 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~  287 (339)
                      +..++.+++.+.|+++ ++... .|                ..+.++++.++ .....++++.|.. .|+.++.|..+. 
T Consensus       349 ~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~-  408 (449)
T 3qgu_A          349 FYKENAQILKTTFTEM-GFSVY-GG----------------DDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYG-  408 (449)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCEE-ES----------------SSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGC-
T ss_pred             HHHHHHHHHHHHHHHC-CCeee-CC----------------CCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhC-
Confidence            7788889999999876 44322 12                13567888776 2234566666544 488877664321 


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  335 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~  335 (339)
                         +                 ..++.||||+..  ++.++.++.|.++++
T Consensus       409 ---~-----------------~~~~~iRis~~~~~e~i~~~l~~l~~~~~  438 (449)
T 3qgu_A          409 ---P-----------------AGEGFVRASAFGSRENILEAVRRFKEAYG  438 (449)
T ss_dssp             ---G-----------------GGTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             ---C-----------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence               1                 135789999754  333444555555554

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.78  E-value=3e-17  Score=155.26  Aligned_cols=224  Identities=13%  Similarity=0.127  Sum_probs=147.1

Q ss_pred             HHH-HHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDA-LESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~-le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+ |++.+++++    |    .++++++++|++|+.+++ .+++|||+|+++.+.|++....+.               
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~  144 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQA  144 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECS
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCC
Confidence            345 666666654    4    356888888899998654 578899999999988875542221               


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---c-ccC--CC
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---P-LEL--GA  144 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~-~~~--~~  144 (339)
                                                              ++|+++|++||+++|+|++|+.+... .   . ...  ..
T Consensus       145 ~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  224 (390)
T 1d2f_A          145 DGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGD  224 (390)
T ss_dssp             SSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSS
T ss_pred             CccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhh
Confidence                                                    88999999999999999999864331 1   1 112  22


Q ss_pred             -eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-hcCC-CCChHHHHHHHhchh----hHHHHHHHHHHHHHHH
Q 019543          145 -DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AEGS-GLAPFDCWICLRGVK----TMALRVEKQQDNAQKI  217 (339)
Q Consensus       145 -Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~~~~-~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l  217 (339)
                       |+ +.|+||+++.+| ...|+++++++++.+.++.... ..+. ..++...+.+...++    .++...++..++.+++
T Consensus       225 ~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (390)
T 1d2f_A          225 WAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI  302 (390)
T ss_dssp             EEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence             77 999999998555 4567888865577777776654 3332 556655444444343    2455566667788888


Q ss_pred             HHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCH-HHHHHHHccCC-cceeecccCCcccceecccc
Q 019543          218 AEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       218 ~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~-~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+.|++ +|++..+  +                +.++ ++++.+.+. ....++.+.|. ..|+.++.|..+.    +  
T Consensus       303 ~~~L~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~----~--  358 (390)
T 1d2f_A          303 ADKMNAAFPELNWQ--I----------------PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYG----E--  358 (390)
T ss_dssp             HHHHHHHCSSCCCC--C----------------CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGC----G--
T ss_pred             HHHHHhhCCCCEEe--c----------------CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccC----C--
Confidence            888887 6665321  1                1233 446776432 13456777776 5788887664321    0  


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                                     ..++.+|||++..
T Consensus       359 ---------------~~~~~~Ris~~~~  371 (390)
T 1d2f_A          359 ---------------EGRGFVRLNAGCP  371 (390)
T ss_dssp             ---------------GGTTEEEEECCSC
T ss_pred             ---------------CCCCeEEEEecCC
Confidence                           0246899999974

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.78  E-value=1e-17  Score=159.85  Aligned_cols=248  Identities=15%  Similarity=0.072  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+++++    |    .+ ++++++||++|+.+++ .+++|||+|+++++.|++....+.               
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~  143 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDG  143 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccc
Confidence            456777777764    5    23 6778888899998644 578999999999998876543221               


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cc-c----CC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PL-E----LG  143 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~-~----~~  143 (339)
                                                             ++|+++|++||+++|+|++|+.+... .   .+ .    .+
T Consensus       144 ~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  223 (411)
T 2o0r_A          144 RGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAE  223 (411)
T ss_dssp             TEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred             cCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCC
Confidence                                                   88999999999999999999765431 1   11 1    35


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh----hHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK----TMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~----~~~~r~~~~~~~a~~l~~  219 (339)
                      .|++++|+||.++.+| ...|+++++ +++++.+.......+...++...+.+...|+    .++...++..++.+++.+
T Consensus       224 ~~i~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  301 (411)
T 2o0r_A          224 RTITISSAAKMFNCTG-WKIGWACGP-AELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAA  301 (411)
T ss_dssp             GEEEEEEHHHHTTCTT-TCEEEEECC-HHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhcCCcc-ceEEEEeeC-HHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            6999999999998665 456888876 5788887766554443444433333333332    244556666777888888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCC-cceeecccCCcccceeccccccC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      .|+++ ++.. ..|                ..+.++++.+.+.  ....++.+.|. ..|+.+..|..+...  .....|
T Consensus       302 ~L~~~-g~~~-~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~--~~~~~~  361 (411)
T 2o0r_A          302 GLTEI-GFAV-HDS----------------YGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDP--AAGQAS  361 (411)
T ss_dssp             HHHHH-TCEE-CCC----------------CBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCC--C-----
T ss_pred             HHHHc-CCEe-cCC----------------CeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCC--cccccc
Confidence            88765 4432 111                1244777877431  12456777664 568888766432110  000011


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ...        +..++.+|||++.  +++.++.+.++|++
T Consensus       362 ~~~--------~~~~~~iRis~~~--~~e~i~~~~~~l~~  391 (411)
T 2o0r_A          362 QQA--------DVWNHLVRFTFCK--RDDTLDEAIRRLSV  391 (411)
T ss_dssp             -----------CCGGGCEEEECCS--CHHHHHHHHHHHGG
T ss_pred             ccc--------cCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            100        0124679999985  34445555555543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.78  E-value=5.9e-18  Score=160.74  Aligned_cols=240  Identities=16%  Similarity=0.168  Sum_probs=159.2

Q ss_pred             cCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC-------CC-CEEEEcCCCccchHH------------
Q 019543           50 TRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG-------TG-EEIVAGDDLYGGTDR------------  108 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~-------~G-D~Vi~~~~~y~~~~~------------  108 (339)
                      .+..++..+++++++++++|.+++++++||++|+.+++. +..       +| |+|++.++.|++...            
T Consensus        76 ~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~  155 (406)
T 4adb_A           76 NGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS  155 (406)
T ss_dssp             TTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT
T ss_pred             CCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc
Confidence            344578899999999999999999999999999986544 433       65 999999998876521            


Q ss_pred             -------------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc
Q 019543          109 -------------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP  139 (339)
Q Consensus       109 -------------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~  139 (339)
                                         .++                             ++|.++|++||++||+|++|+ .+..+.+
T Consensus       156 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~  235 (406)
T 4adb_A          156 QDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGEL  235 (406)
T ss_dssp             GGGCSCCSSEEEECTTCHHHHHTTCSTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             ccCCCCCCCceEeCCCcHHHHHHHhcCCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence                               011                             899999999999999999996 3222222


Q ss_pred             -----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHH
Q 019543          140 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQD  212 (339)
Q Consensus       140 -----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~  212 (339)
                           .....|++  ||||+++ +| ..+|++++++ ++++.+.......+...++..++.+...++.+  +...++.++
T Consensus       236 ~~~~~~~~~~d~~--t~sK~~~-~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  310 (406)
T 4adb_A          236 YAYMHYGVTPDLL--TTAKALG-GG-FPVGALLATE-ECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQ  310 (406)
T ss_dssp             SHHHHHTCCCSEE--EECGGGG-TT-SCCEEEEECH-HHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred             HHHHhcCCCCCEE--Eechhhc-CC-CCeEEEEEcH-HHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                 12345766  6799999 34 5677888764 66665554332334566777766666666544  555666777


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH--HHHHHHccCCcceeecccCCcccceec
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA--LSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~--~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      +.+++.+.|+....    .++....          .++.+.+++|.+.+..  ...++++.|...|+.++.+        
T Consensus       311 ~~~~l~~~l~~~~~----~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~--------  368 (406)
T 4adb_A          311 RHDWFVERLNTINH----RYGLFSE----------VRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA--------  368 (406)
T ss_dssp             HHHHHHHHHHHHHH----HHCCEEE----------EEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES--------
T ss_pred             HHHHHHHHHHHHHH----hCCCceE----------EEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec--------
Confidence            78888887775421    0110000          1235678899885432  3567777777777766532        


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                         .++.+|++++...+++.++.+.++|+
T Consensus       369 -------------------~~~~iRi~~~~~~~~e~i~~~~~~l~  394 (406)
T 4adb_A          369 -------------------GGNVVRFAPALNVSEEEVTTGLDRFA  394 (406)
T ss_dssp             -------------------STTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             -------------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence                               23679998777665555555554443

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.78  E-value=1e-17  Score=158.36  Aligned_cols=241  Identities=14%  Similarity=0.136  Sum_probs=154.0

Q ss_pred             CchHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--HHHH----------------
Q 019543           54 NPTRDALESLLAKLDKAD---RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--RLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--~~~~----------------  111 (339)
                      .+..+++++.+++++|.+   .+++++||++|+.+++ .+++|||+|+++++.|++..  .+.+                
T Consensus        51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  130 (393)
T 2huf_A           51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKVGQS  130 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCC
Confidence            356889999999999975   3556788899998644 57899999999998887632  1111                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|++||+++|+|++|+.+... +....+.|++++|+||+++|
T Consensus       131 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g  210 (393)
T 2huf_A          131 LSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA  210 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCC
T ss_pred             CCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCccccc
Confidence                                             89999999999999999999876432 22234689999999999875


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHH----H-h---------cC---------CCCChHHHHHHHhchhh-----HHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQ----N-A---------EG---------SGLAPFDCWICLRGVKT-----MALRVEK  209 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~----~-~---------~~---------~~~~~~~a~~~~~~l~~-----~~~r~~~  209 (339)
                      +.+.  |+++++ +++.+.++...    . .         ++         ...+....+.+...++.     ++...++
T Consensus       211 ~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  287 (393)
T 2huf_A          211 PPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIAR  287 (393)
T ss_dssp             CSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            5433  777776 46777665320    0 0         11         12233322222222222     4556677


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCcccce
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLI  288 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~  288 (339)
                      ..++++++.+.|+++ +++. ..|.    .         ...+.+++|.+.......++.+.|.. .|+.++.|..    
T Consensus       288 ~~~~~~~l~~~L~~~-g~~~-~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~----  348 (393)
T 2huf_A          288 HEDCAKRLYRGLQDA-GFEL-YADP----K---------DRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLG----  348 (393)
T ss_dssp             HHHHHHHHHHHHHHT-TCCB-SSCG----G---------GBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCG----
T ss_pred             HHHHHHHHHHHHHHc-CCee-ccCc----c---------ccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcc----
Confidence            778889999999876 4431 1110    0         00234888877422234567777754 5888776542    


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEe-ccC----CHHHHHHHHHHHHh
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISV-GIE----DVNDLISDLDKALR  335 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~e----~~~~li~~l~~al~  335 (339)
                        +                 ..++.+|||+ +..    +.+.+++.|.++++
T Consensus       349 --~-----------------~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~  381 (393)
T 2huf_A          349 --P-----------------TAGQVFRIGLMGQNATTERVDRVLQVFQEAVA  381 (393)
T ss_dssp             --G-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             --c-----------------ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence              1                 0347899999 643    24445555555554

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.77  E-value=3.6e-17  Score=160.47  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHHH-hc-CCCCEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDK----ADRALCFTSGMAALAAVTH-LL-GTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il~-ll-~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .++++.+.+.+..|    .++++++++|++|+..++. ++ ++||+|+++.+.|......+.                  
T Consensus       139 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  218 (500)
T 3tcm_A          139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWG  218 (500)
T ss_dssp             HHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSB
T ss_pred             HHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCC
Confidence            34444444444333    4578888888999986554 66 799999999998876543322                  


Q ss_pred             -----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cc--------
Q 019543          112 -----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PL--------  140 (339)
Q Consensus       112 -----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~--------  140 (339)
                                                               ++|+++|++||+++|+|++|+...+..  +.        
T Consensus       219 ~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~  298 (500)
T 3tcm_A          219 LETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVR  298 (500)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHH
Confidence                                                     788889999999999999998755421  11        


Q ss_pred             cC-----CC-eEEEeccccccccCCCceEEEEEEc--ChhHHHHHHHHHHhcCCCCChHHHHHH---Hh-----------
Q 019543          141 EL-----GA-DIVMHSATKFIAGHSDVMAGVLAVK--GERLAKELYFLQNAEGSGLAPFDCWIC---LR-----------  198 (339)
Q Consensus       141 ~~-----~~-Di~~~S~sK~l~g~~~~~gG~v~~~--~~~l~~~l~~~~~~~~~~~~~~~a~~~---~~-----------  198 (339)
                      ..     .. .++++|+||.+.|..+..+|++++.  ++++++.+...+.. ....+....+++   +.           
T Consensus       299 ~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~  377 (500)
T 3tcm_A          299 SLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMNPPKASDESYAS  377 (500)
T ss_dssp             HTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHSCCCSSSTHHHH
T ss_pred             HhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhcCccccchhHHH
Confidence            01     11 3778899999943333567788761  34688888776643 333344333222   22           


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE-eeCCHHH------------H
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLAL------------S  265 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~-~~~~~~~------------~  265 (339)
                      ..+..+..+++++++++++.+.|+++++++.+ .|                 .++++.+ .+..+..            .
T Consensus       378 ~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~-----------------~g~~~~~~~~~lp~~~~~~~~~~g~~~~  439 (500)
T 3tcm_A          378 YKAEKDGILASLARRAKALEHAFNKLEGITCN-EA-----------------EGAMYVFPQICLPQKAIEAAKAANKAPD  439 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CC-----------------CBTTEECCEECCCHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cC-----------------CeEEEEeeeecCchhhHHHHHhcCCCcH
Confidence            12334556677788899999999998876532 11                 3455544 2321111            1


Q ss_pred             HHH-HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          266 KHV-VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       266 ~~~-~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                      ..+ .+.|++.||.+..|..+..   +                 ..++.+|+|++.  ++.++.++.|.+++++
T Consensus       440 ~~~~~~ll~~~gI~v~pg~~f~~---~-----------------~g~~~iRis~~~~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          440 AFYALRLLESTGIVVVPGSGFGQ---V-----------------PGTWHFRCTILPQEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             HHHHHHHHHHHCEECEESTTTCC---C-----------------TTCCBEEEESCSCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEEeCcccCC---C-----------------CCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            122 2445667888887754321   0                 134689999983  3455667777766653

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.77  E-value=2.6e-17  Score=155.99  Aligned_cols=236  Identities=14%  Similarity=0.119  Sum_probs=147.6

Q ss_pred             hHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCC-CEEEEcCCCccchHHHHH------------------
Q 019543           56 TRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTG-EEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~G-D~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      .++++.+.+++.+|    .++++++++|++|+..++ .+++|| |+|+++++.|.+....+.                  
T Consensus        81 lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~  160 (398)
T 3ele_A           81 TRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQI  160 (398)
T ss_dssp             HHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSC
T ss_pred             HHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcC
Confidence            34444444444444    357888888899998654 578999 999999999987664433                  


Q ss_pred             ----------------------------------HHHHHHHHH------cCCEEEEeCCcCCCCCcC-cc-----cCCCe
Q 019543          112 ----------------------------------RKIAEMAHA------HGALLLVDNSIMSPVLSR-PL-----ELGAD  145 (339)
Q Consensus       112 ----------------------------------~~I~~la~~------~g~~livD~a~a~g~~~~-~~-----~~~~D  145 (339)
                                                        ++|+++|++      ||+++|+|++|+...... ..     ..+.+
T Consensus       161 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  240 (398)
T 3ele_A          161 DFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNT  240 (398)
T ss_dssp             CHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSE
T ss_pred             CHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCe
Confidence                                              778899999      999999999997643311 11     12457


Q ss_pred             EEEeccccccccCCCceEEEEEEcCh-----hHHHHHHHHHHhcC-CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGE-----RLAKELYFLQNAEG-SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~-----~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~  219 (339)
                      +++.|+||+++.+|. ..|+++++++     .+.+.+.......+ ...++...+.+...++... ..++..++.+++.+
T Consensus       241 i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~l~~  318 (398)
T 3ele_A          241 LVCYSYSKSLSLPGE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKENRDLLYE  318 (398)
T ss_dssp             EEEEESTTTSSCTTT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHHHHHHHHH
T ss_pred             EEEEehhhcCCCccc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHH
Confidence            999999999986664 4578877763     12333333333333 3445555555555554322 34556677778888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|+++ ++. +..|.                .+..+++.+.+. ...++.+.|+..|+.++.|..+.             
T Consensus       319 ~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~-~~~~~~~~l~~~gi~v~~g~~~~-------------  366 (398)
T 3ele_A          319 GLTRI-GYH-CFKPD----------------GAFYMFVKALED-DSNAFCEKAKEEDVLIVAADGFG-------------  366 (398)
T ss_dssp             HHHHH-TCC-EECCS----------------BSSEEEEECSSS-CHHHHHHHHHTTTEECEESGGGT-------------
T ss_pred             HHHHc-CCe-ecCCC----------------eeEEEEEEcCCC-CHHHHHHHHHHCCEEEeCccccC-------------
Confidence            88765 333 22221                233477777532 34567777777888887664321             


Q ss_pred             CHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Q 019543          300 PVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALR  335 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~  335 (339)
                                .++.+|||++.  |+.++.++.|.++++
T Consensus       367 ----------~~~~iRis~~~~~e~i~~~l~~l~~~l~  394 (398)
T 3ele_A          367 ----------CPGWVRISYCVDREMIKHSMPAFEKIYK  394 (398)
T ss_dssp             ----------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence                      13689999984  122334455555554

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.77  E-value=3.3e-17  Score=157.08  Aligned_cols=240  Identities=18%  Similarity=0.106  Sum_probs=153.2

Q ss_pred             HHHHHHHHHhHh----C----CC-eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHH-----------------
Q 019543           57 RDALESLLAKLD----K----AD-RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRL-----------------  109 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~-~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~-----------------  109 (339)
                      ..+|++.+++++    |    .+ +++++++|++|+.+++ .++++||+|+++.+.|++....                 
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~  158 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNK  158 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCccc
Confidence            456777777664    5    34 6778888899998654 4789999999998877643210                 


Q ss_pred             ----------------HH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC---c--
Q 019543          110 ----------------LS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR---P--  139 (339)
Q Consensus       110 ----------------~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~~---~--  139 (339)
                                      +.                            ++|+++|++||+++|+|++|+...+ +.   +  
T Consensus       159 ~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~  238 (429)
T 1yiz_A          159 TGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRIC  238 (429)
T ss_dssp             SSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGG
T ss_pred             ccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChh
Confidence                            11                            8899999999999999999975332 11   1  


Q ss_pred             -c--cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-----------HHH
Q 019543          140 -L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-----------MAL  205 (339)
Q Consensus       140 -~--~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-----------~~~  205 (339)
                       +  ..+.|+++.|+||.++++| ...|+++++ +++++.+...........++...+.+...|+.           +..
T Consensus       239 ~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  316 (429)
T 1yiz_A          239 TLPGMWERTITIGSAGKTFSLTG-WKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNS  316 (429)
T ss_dssp             GSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESC-HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred             hccCCcCceEEEecchhccCCCC-cceEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHH
Confidence             1  2357899999999998665 445788876 46888777665544555566544443333333           445


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH------------HHHHHHHccCC
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------------ALSKHVVETTK  273 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~------------~~~~~~~~~L~  273 (339)
                      ..++..++.+++.+.|+++ ++.. ..|.                .+.++++.+.+.            ....++++.|.
T Consensus       317 ~~~~~~~~~~~l~~~L~~~-g~~~-~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  378 (429)
T 1yiz_A          317 ISGELMAKRDYMASFLAEV-GMNP-TVPQ----------------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT  378 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TCEE-EECS----------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcc-cCCC----------------cceEEEEEcccccccccccccccCCCHHHHHHHHH
Confidence            5566667788888888776 4432 2221                345788877532            23456777664


Q ss_pred             -cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          274 -YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       274 -~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                       ..|+.++.|..+..  .+    +          .+..++.+|||++.  +++.++.+.+.|
T Consensus       379 ~~~gv~v~~g~~f~~--~~----~----------~~~~~~~iRis~~~--~~e~i~~~l~~l  422 (429)
T 1yiz_A          379 KSVGLQGIPPSAFYS--EP----N----------KHLGEDFVRYCFFK--KDENLQKAAEIL  422 (429)
T ss_dssp             HHTSEECBCGGGGSC--GG----G----------GGGTTTEEEEECCS--CHHHHHHHHHHH
T ss_pred             HhCCEEEeCchHhCC--Cc----c----------cCCCCCeEEEEecC--CHHHHHHHHHHH
Confidence             67888876643211  00    0          00125789999985  344444444444

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.77  E-value=2.2e-17  Score=157.73  Aligned_cols=244  Identities=14%  Similarity=0.102  Sum_probs=154.1

Q ss_pred             HHHHHHHHHhHh----CC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHH-----------------
Q 019543           57 RDALESLLAKLD----KA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRL-----------------  109 (339)
Q Consensus        57 ~~~le~~la~~~----g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~-----------------  109 (339)
                      ..++++.+++++    |.     +++++++||++|+..++ .+++|||+|+++.+.|.+....                 
T Consensus        69 ~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~  148 (422)
T 3fvs_A           69 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGP  148 (422)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccc
Confidence            345555555554    32     46888888899998654 5789999999998877654311                 


Q ss_pred             ------------------HH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c
Q 019543          110 ------------------LS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P  139 (339)
Q Consensus       110 ------------------~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~  139 (339)
                                        +.                            ++|+++|++||+++|+|++|+...+..    .
T Consensus       149 ~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~  228 (422)
T 3fvs_A          149 IQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHIS  228 (422)
T ss_dssp             CCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCC
T ss_pred             ccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCC
Confidence                              11                            889999999999999999997543211    1


Q ss_pred             c-c----CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----------hH
Q 019543          140 L-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----------TM  203 (339)
Q Consensus       140 ~-~----~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----------~~  203 (339)
                      + .    .+.++++.|+||.++.+| ...|++++++ ++++.+...........++...+.+...++           .+
T Consensus       229 ~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  306 (422)
T 3fvs_A          229 IASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPD-HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYF  306 (422)
T ss_dssp             GGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHH
T ss_pred             hhhcccccCcEEEEecchhccCCcc-ceEEEEEeCH-HHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHH
Confidence            1 1    234699999999998655 3457887764 677877766655555566665554444443           24


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHH-------------HHHHHc
Q 019543          204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLAL-------------SKHVVE  270 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~-------------~~~~~~  270 (339)
                      +...++..++.+++.+.|+++ ++. +..|.                .+..+++.+.....             ..++++
T Consensus       307 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (422)
T 3fvs_A          307 VQFPQAMQRCRDHMIRSLQSV-GLK-PIIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVK  368 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----------------eeeEEEEechhhcccccccccccccccHHHHHH
Confidence            566777788889999999887 553 23331                34566666532110             335565


Q ss_pred             c-CCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhc
Q 019543          271 T-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRT  336 (339)
Q Consensus       271 ~-L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~  336 (339)
                      . +++.|+.++.|..+..  .+.            .  ...++.+|||++.  ++.++.++.|.+++++
T Consensus       369 ~ll~~~gv~v~~g~~f~~--~~~------------~--~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          369 WMIKNKGLVAIPVSIFYS--VPH------------Q--KHFDHYIRFCFVKDEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             HHHHHHCEECEEGGGGSC--HHH------------H--TTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCEEEeCcHHhcC--CcC------------C--CCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence            5 3457888877653211  000            0  0145889999987  2223445555555543

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.77  E-value=8.2e-18  Score=158.53  Aligned_cols=243  Identities=16%  Similarity=0.191  Sum_probs=157.7

Q ss_pred             CchHHHHHHHHHhHhCCC---eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccch--HHHHH----------------
Q 019543           54 NPTRDALESLLAKLDKAD---RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGT--DRLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~--~~~~~----------------  111 (339)
                      .+..+++++++++++|.+   .+++++||++|+.+ +..+++|||+|+++.+.|.+.  .....                
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  134 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEH  134 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCC
Confidence            356789999999999865   36677888999975 445889999999988776432  11111                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|++||+++|+|++|+.|... .....+.|+++.|+||+++|
T Consensus       135 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~  214 (393)
T 3kgw_A          135 YTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNA  214 (393)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCC
T ss_pred             CCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccC
Confidence                                             89999999999999999999866432 22345789999999999875


Q ss_pred             CCCceEEEEEEcChhHHHHHHHHH--------------Hhc---------CCCCChHHHHHHHhchh---h--HHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELYFLQ--------------NAE---------GSGLAPFDCWICLRGVK---T--MALRVEK  209 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~~~~--------------~~~---------~~~~~~~~a~~~~~~l~---~--~~~r~~~  209 (339)
                      +.+  .|++++++ ++++.+....              ..+         ....+....+.+...++   .  ++...++
T Consensus       215 ~~g--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  291 (393)
T 3kgw_A          215 PPG--ISLISFND-KAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRR  291 (393)
T ss_dssp             CSS--CEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CCc--eeEEEECH-HHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            543  47777764 6666664311              011         12334433333323333   2  4566777


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccce
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLI  288 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~  288 (339)
                      ..++++++.+.|+++ +++. ..|.    +.        ...+.+++|.+.+.....++.+.|... |+.++.|..    
T Consensus       292 ~~~~~~~l~~~L~~~-g~~~-~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~----  353 (393)
T 3kgw_A          292 HREATAHLHKHLQEM-GLKF-FVKD----PE--------IRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLG----  353 (393)
T ss_dssp             HHHHHHHHHHHHHHT-TCCB-SSSS----GG--------GBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCG----
T ss_pred             HHHHHHHHHHHHHHc-CCee-ccCC----hh--------hcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcc----
Confidence            788899999999887 4432 1111    00        112456677775333456777777665 888876531    


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEe-cc----CCHHHHHHHHHHHHhc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISV-GI----EDVNDLISDLDKALRT  336 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~----e~~~~li~~l~~al~~  336 (339)
                        +                 ..++.+||++ +.    ++.+.+++.|.+++++
T Consensus       354 --~-----------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          354 --P-----------------TEERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             --G-----------------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             --c-----------------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence              1                 1347899998 64    4455666666666654

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.77  E-value=1.2e-17  Score=157.85  Aligned_cols=157  Identities=23%  Similarity=0.290  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHH---H-------------------
Q 019543           56 TRDALESLLAKLDKA---DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRL---L-------------------  110 (339)
Q Consensus        56 ~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~---~-------------------  110 (339)
                      ..+++++.+++++|+   +++++++||++|+..++..+ |||+|+++++.|++....   +                   
T Consensus        59 ~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v~d~~~l~~~  137 (374)
T 2aeu_A           59 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-KPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNK  137 (374)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-CCCEEEEecCCCCccHHHHHHHHHcCcEEEEeCCHHHHHhc
Confidence            346777777888898   78999999999998655544 999999999977653210   0                   


Q ss_pred             -------H----------------HHHHHHHHHcCCEEEEeCCcCCCCC---cC--cccCCCeEEEeccccccccCCCce
Q 019543          111 -------S----------------RKIAEMAHAHGALLLVDNSIMSPVL---SR--PLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       111 -------~----------------~~I~~la~~~g~~livD~a~a~g~~---~~--~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                             -                ++|.++|++||+++|+|++|+.+..   ..  +...+.|++++|+||+++|+   .
T Consensus       138 ~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~---~  214 (374)
T 2aeu_A          138 IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---R  214 (374)
T ss_dssp             CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC---S
T ss_pred             CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc---c
Confidence                   0                8999999999999999999976531   11  34457799999999998853   5


Q ss_pred             EEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH-HHHHHHHHHHHH
Q 019543          163 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKI  217 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~-r~~~~~~~a~~l  217 (339)
                      +|++++++ ++++.++.....++..+++..++++..+++.+.. +++++.++++.+
T Consensus       215 ~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~  269 (374)
T 2aeu_A          215 GGLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF  269 (374)
T ss_dssp             CEEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             eEEEEECH-HHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            78888875 7888888777667777788877777666665433 555555555555

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.77  E-value=1.7e-17  Score=157.79  Aligned_cols=243  Identities=17%  Similarity=0.083  Sum_probs=157.6

Q ss_pred             HHHHHHHHHhHhC--------C-CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH----------------
Q 019543           57 RDALESLLAKLDK--------A-DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL----------------  110 (339)
Q Consensus        57 ~~~le~~la~~~g--------~-~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~----------------  110 (339)
                      ..++++.++++++        . ++++++++|++|+..++ .++++||+|+++.+.|.+....+                
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~  142 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKP  142 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccc
Confidence            5677777777765        2 57888888899998644 57899999999998876543211                


Q ss_pred             ------------------H----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc
Q 019543          111 ------------------S----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL  140 (339)
Q Consensus       111 ------------------~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~  140 (339)
                                        .                            ++|+++|++||+++|+|++|+......    .+
T Consensus       143 ~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~  222 (410)
T 3e2y_A          143 TDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKI  222 (410)
T ss_dssp             CCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCH
Confidence                              1                            889999999999999999997543211    11


Q ss_pred             -c----CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh-----------hHH
Q 019543          141 -E----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK-----------TMA  204 (339)
Q Consensus       141 -~----~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-----------~~~  204 (339)
                       .    .+.++++.|+||.++.+| ...|++++++ ++++.++......+...++...+.+...++           .+.
T Consensus       223 ~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  300 (410)
T 3e2y_A          223 ATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPA-HLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFN  300 (410)
T ss_dssp             GGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCH-HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHH
T ss_pred             HHcCCccCeEEEEecchhhcCCCC-ceEEEEEECH-HHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHH
Confidence             1    133599999999998665 4567887764 677887776655555666665554444433           245


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----------HHHHHHHccC-
Q 019543          205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----------ALSKHVVETT-  272 (339)
Q Consensus       205 ~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----------~~~~~~~~~L-  272 (339)
                      ...++..++.+++.+.|+++ ++. +..|.                .+.++++.+...           ....++++.+ 
T Consensus       301 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  362 (410)
T 3e2y_A          301 SLPKELEVKRDRMVRLLNSV-GLK-PIVPD----------------GGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMT  362 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------ccEEEEEEchhhhcccccccccccCHHHHHHHHH
Confidence            66677778889999999887 553 23331                344555554211           0123455543 


Q ss_pred             CcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          273 KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       273 ~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++.|+.++.|..+..  .+        +.+      ..++.+|||++.  +++.++.+.++|+++
T Consensus       363 ~~~gv~v~~g~~f~~--~~--------~~~------~~~~~iRis~~~--~~e~l~~~l~~l~~~  409 (410)
T 3e2y_A          363 KHKKLTAIPVSAFCD--SK--------SKP------HFEKLVRFCFIK--KDSTLDAAEEIFRAW  409 (410)
T ss_dssp             HHHSEECEEGGGGSC--TT--------THH------HHTTEEEEECCC--CHHHHHHHHHHHHTC
T ss_pred             HHcCEEEeCchhhCC--CC--------CCC------CCCCEEEEEEcC--CHHHHHHHHHHHHhc
Confidence            567888876653221  00        000      024789999987  556666676766653

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.77  E-value=1.2e-17  Score=158.52  Aligned_cols=247  Identities=19%  Similarity=0.195  Sum_probs=157.4

Q ss_pred             CCchHHHHH----HHHHhHhCCCeEEE-cCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH---------H--------
Q 019543           53 GNPTRDALE----SLLAKLDKADRALC-FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR---------L--------  109 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~~~l~-~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~---------~--------  109 (339)
                      +++...++|    +++++++|.+...+ ++||++|+.++ ..++++||+|+++++.|+....         .        
T Consensus        63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  142 (405)
T 2vi8_A           63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEEC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecc
Confidence            345666776    59999999887655 68999999854 4578999999999876543210         0        


Q ss_pred             ----------------HH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---ccc-CCCeEEEe
Q 019543          110 ----------------LS--------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---PLE-LGADIVMH  149 (339)
Q Consensus       110 ----------------~~--------------------~~I~~la~~~g~~livD~a~a~g~~~~---~~~-~~~Di~~~  149 (339)
                                      +.                    ++|.++|++||+++|+|++|+.|....   ... ...|++++
T Consensus       143 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~  222 (405)
T 2vi8_A          143 VDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTT  222 (405)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEE
T ss_pred             cccccCCcCHHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEE
Confidence                            00                    999999999999999999998543211   111 15799999


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-CCCChHHHHHHHhch-----hhHHHHHHHHHHHHHHHHHHHhC
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-SGLAPFDCWICLRGV-----KTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-~~~~~~~a~~~~~~l-----~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      |+||+++|+.   ||+++++ +++.+.++.....+. ...++...+.+...+     +.++...++..++.+++.+.|++
T Consensus       223 s~sK~~~g~~---gG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~  298 (405)
T 2vi8_A          223 TTHKTLRGPR---GGMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN  298 (405)
T ss_dssp             ESSSTTCCCS---CEEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccCCCCC---CeEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998543   4888887 467777766543222 222343322222222     23456677778889999999987


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      + ++. +..|               .+.+.++++.+.+. .....+.+.|...|+.++.|..      |.   |.. +. 
T Consensus       299 ~-g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~------~~---~~~-~~-  350 (405)
T 2vi8_A          299 E-GFT-LVSG---------------GTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTI------PY---DPE-SP-  350 (405)
T ss_dssp             T-TCE-EGGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECC------TT---CSS-CT-
T ss_pred             C-CCe-EecC---------------CCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcC------cc---ccC-CC-
Confidence            7 543 2222               12467888877421 1245667777777888776541      10   000 00 


Q ss_pred             HHHhCCCCCCeEEEEecc--------CCHHHHHHHHHHHHhcC
Q 019543          303 VRQARGLTEDLVRISVGI--------EDVNDLISDLDKALRTG  337 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~--------e~~~~li~~l~~al~~~  337 (339)
                            ..++.+|+|++.        ++.+.+++.|.+++++.
T Consensus       351 ------~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~  387 (405)
T 2vi8_A          351 ------FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             ------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             ------CCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence                  123579999995        44555666666666543

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.77  E-value=2.8e-17  Score=154.56  Aligned_cols=201  Identities=11%  Similarity=0.042  Sum_probs=136.9

Q ss_pred             HHHHHHHHHhH------hCC--CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           57 RDALESLLAKL------DKA--DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        57 ~~~le~~la~~------~g~--~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ..++++.++++      .+.  +.++++++|++|+.++ ..++++||+|+++++.|++....+.                
T Consensus        71 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~  150 (369)
T 3cq5_A           71 AVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFR  150 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSS
T ss_pred             HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCC
Confidence            46899999888      443  3566666668888754 4578999999999998876643322                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Cccc----CC-CeEEEeccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLE----LG-ADIVMHSAT  152 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~----~~-~Di~~~S~s  152 (339)
                                                       ++|.++|+.+++++|+|++|+.+... ....    .+ .+++++|+|
T Consensus       151 ~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  230 (369)
T 3cq5_A          151 IDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMS  230 (369)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESS
T ss_pred             CCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEech
Confidence                                             89999999999999999999765431 2221    24 569999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      |+++.+| ...|++++++ ++.+.++....  ....++...+.+...++   .++.+.++..++.+++.+.|++. +++.
T Consensus       231 K~~~~~G-~r~G~~~~~~-~~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  305 (369)
T 3cq5_A          231 KAFDFAG-GRLGYFVANP-AFIDAVMLVRL--PYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-GYAV  305 (369)
T ss_dssp             STTSCGG-GCCEEEEECT-HHHHHHHTTSC--TTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-TCEE
T ss_pred             HhcCCcc-cceEEEEeCH-HHHHHHHHcCC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE
Confidence            9998655 4567888875 67666654332  23456665555544444   34556667778888888888763 4432


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccC
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G  282 (339)
                      +  |.                .++++++.++  ....++.+.|...|+.++.|
T Consensus       306 ~--~~----------------~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~~  338 (369)
T 3cq5_A          306 V--PS----------------ESNFVFFGDF--SDQHAAWQAFLDRGVLIRDV  338 (369)
T ss_dssp             E--CC----------------SSSEEEEECC--SSHHHHHHHHHHTTEECBCC
T ss_pred             C--CC----------------CCeEEEEECC--CCHHHHHHHHHHCCEEEEEC
Confidence            2  31                3567888775  23456677776778877644

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.77  E-value=1.3e-17  Score=160.02  Aligned_cols=242  Identities=12%  Similarity=0.047  Sum_probs=153.9

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHH--HHH-HhcC--C----------CCEEEEcCCCccchHHHHH------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA--AVT-HLLG--T----------GEEIVAGDDLYGGTDRLLS------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~--~il-~ll~--~----------GD~Vi~~~~~y~~~~~~~~------  111 (339)
                      ....+|++.++++++.+  ++++++++++|+.  .++ .++.  |          ||+|+++++.|.+....++      
T Consensus        78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~  157 (427)
T 3ppl_A           78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEM  157 (427)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEE
T ss_pred             CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEE
Confidence            45678999999998864  5667777788983  443 4566  6          9999999999987654433      


Q ss_pred             ----------------------------------------------HHHHHHH-HHcCCEEEEeCCcCCCCCcC-c----
Q 019543          112 ----------------------------------------------RKIAEMA-HAHGALLLVDNSIMSPVLSR-P----  139 (339)
Q Consensus       112 ----------------------------------------------~~I~~la-~~~g~~livD~a~a~g~~~~-~----  139 (339)
                                                                    ++|+++| ++||+++|+|++|+...+.. +    
T Consensus       158 ~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~  237 (427)
T 3ppl_A          158 ISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVI  237 (427)
T ss_dssp             EEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCC
T ss_pred             EEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCcc
Confidence                                                          5899999 99999999999997643311 1    


Q ss_pred             --c-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------H
Q 019543          140 --L-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------M  203 (339)
Q Consensus       140 --~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------~  203 (339)
                        .       ..+.+++++||||+ +++| ...|+++++ +++++.+.......+...++.....+...++.       +
T Consensus       238 ~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  314 (427)
T 3ppl_A          238 DIVGLGEAAGNPNRFWAFTSTSKI-TLAG-AGVSFFLTS-AENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVM  314 (427)
T ss_dssp             CHHHHHHHTTCTTSEEEEEESTTT-SCTT-SSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHH
T ss_pred             chhhhhhccCCCCcEEEEechhhc-cCcC-ccEEEEEcC-HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHHHHH
Confidence              1       22457999999999 5455 456788876 47888887776666666666654443333322       2


Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec
Q 019543          204 ALRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                      ....+...++.+.+.+.|++    .+++. +..|                ..+..+++.+.+. ...++.+.|.+.|+.+
T Consensus       315 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~-~~~p----------------~~g~~~~~~~~~~-~~~~~~~~l~~~gv~v  376 (427)
T 3ppl_A          315 RKHAASLAPKFNKVLEILDSRLAEYGVAQ-WTVP----------------AGGYFISLDVVPG-TASRVAELAKEAGIAL  376 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCCE-ECCC----------------SBSSCEEEECSTT-CHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCceE-EeCC----------------CccEEEEEECCcc-hHHHHHHHHHHCCCEE
Confidence            23333344455555555543    22332 2222                1356788887543 3456777777789998


Q ss_pred             ccCCc-ccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC---HHHHHHHHHHHHh
Q 019543          280 SFGSV-KSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED---VNDLISDLDKALR  335 (339)
Q Consensus       280 ~~G~~-~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~---~~~li~~l~~al~  335 (339)
                      +.|+. +...       +           +..++.+|||++..+   .++.++.|.++++
T Consensus       377 ~~~g~~~~~~-------~-----------~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~  418 (427)
T 3ppl_A          377 TGAGSSYPLR-------Q-----------DPENKNLRLAPSLPPVEELEVAMDGVATCVL  418 (427)
T ss_dssp             CCTTTTSGGG-------C-----------CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             ecCcCcCCCC-------C-----------CCCCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            87442 1110       0           013578999998753   3344555555554

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=5.8e-17  Score=156.62  Aligned_cols=243  Identities=10%  Similarity=0.044  Sum_probs=155.1

Q ss_pred             HHHHHHHHHhHh----CC----CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHH------------------
Q 019543           57 RDALESLLAKLD----KA----DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRL------------------  109 (339)
Q Consensus        57 ~~~le~~la~~~----g~----~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~------------------  109 (339)
                      ..+|++.+++++    |.    ++++++++|++|+.++ ..+++|||+|+++++.|++....                  
T Consensus        97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~  176 (447)
T 3b46_A           97 RPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKE  176 (447)
T ss_dssp             CHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccc
Confidence            456777777665    42    4677888889999864 45789999999998877654311                  


Q ss_pred             -----------------HH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c--
Q 019543          110 -----------------LS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P--  139 (339)
Q Consensus       110 -----------------~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~--  139 (339)
                                       +.                            ++|+++|++||++||+|++|+...+..   +  
T Consensus       177 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~  256 (447)
T 3b46_A          177 LDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIA  256 (447)
T ss_dssp             GGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG
T ss_pred             cccccccccCcccCHHHHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHH
Confidence                             11                            889999999999999999997543311   1  


Q ss_pred             -c---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHHHHHH
Q 019543          140 -L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MALRVEK  209 (339)
Q Consensus       140 -~---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~r~~~  209 (339)
                       +   ..+.+++++|+||+++.+|. ..|+++++++++++.+...........++...+++...|+.      ++...++
T Consensus       257 ~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~  335 (447)
T 3b46_A          257 TLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFEKMRQE  335 (447)
T ss_dssp             GSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Confidence             1   12578999999999987665 45788883457888877665444445555544444344433      3445566


Q ss_pred             HHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH---------------HHHHHHHccCC-
Q 019543          210 QQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL---------------ALSKHVVETTK-  273 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~---------------~~~~~~~~~L~-  273 (339)
                      ..++.+++.+.|+++ ++.. ..|.                .+..+++.+.+.               ....+|++.|. 
T Consensus       336 ~~~~~~~l~~~L~~~-g~~~-~~~~----------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~  397 (447)
T 3b46_A          336 YINKFKIFTSIFDEL-GLPY-TAPE----------------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLIN  397 (447)
T ss_dssp             HHHHHHHHHHHHHHH-TCCE-ECCS----------------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCee-cCCC----------------eeEEEEEecccccCccccccccccccCCCHHHHHHHHHH
Confidence            677788888888875 4432 2221                345666666421               23456777664 


Q ss_pred             cceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          274 YFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       274 ~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ..|+.+..|..+..  .+..              +..++.+|||++.  .++.++...+.|++
T Consensus       398 ~~gV~v~pg~~f~~--~~~~--------------~~~~~~iRls~~~--~~e~l~~~~~~l~~  442 (447)
T 3b46_A          398 ELGVVAIPPTEFYI--KEHE--------------KAAENLLRFAVCK--DDAYLENAVERLKL  442 (447)
T ss_dssp             HTCEECBCGGGGSC--GGGG--------------GGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred             hCCEEEECchHhCC--CCcc--------------CCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence            57888876643221  0000              0124789999985  34545666666554

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.76  E-value=3.7e-17  Score=156.84  Aligned_cols=234  Identities=13%  Similarity=0.118  Sum_probs=157.1

Q ss_pred             hHHHHHHHHHhHh-----CC--Ce---EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           56 TRDALESLLAKLD-----KA--DR---ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~-----g~--~~---~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ...+|++.+++++     +.  ++   ++++++|++|+.+++ .+++|||+|+++.+.|++....+.             
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~  168 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIF  168 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCB
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEecc
Confidence            3678999999988     54  46   777788899998654 578999999999987765432110             


Q ss_pred             -------------------------------------------HHHHHHHHH-----cCCEEEEeCCcCCCCCc-C---c
Q 019543          112 -------------------------------------------RKIAEMAHA-----HGALLLVDNSIMSPVLS-R---P  139 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~-----~g~~livD~a~a~g~~~-~---~  139 (339)
                                                                 ++|+++|++     ||+++|+|++|+..... .   +
T Consensus       169 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~  248 (430)
T 2x5f_A          169 DKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQS  248 (430)
T ss_dssp             CTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSC
T ss_pred             CccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchH
Confidence                                                       789999999     99999999999754331 1   1


Q ss_pred             c-----c-CCC---eEEEeccccccccCCCceEEEEEE--cChhHHHHHHHHHHh----cCCCCChHHHHHHHhchh-h-
Q 019543          140 L-----E-LGA---DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNA----EGSGLAPFDCWICLRGVK-T-  202 (339)
Q Consensus       140 ~-----~-~~~---Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~~~~~~----~~~~~~~~~a~~~~~~l~-~-  202 (339)
                      +     . .+.   +++++|+||+++.+|. ..|++++  +++++.+.+......    .....++...+.+...|+ . 
T Consensus       249 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  327 (430)
T 2x5f_A          249 LFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNK  327 (430)
T ss_dssp             HHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCH
T ss_pred             HHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccCh
Confidence            1     1 234   6889999999986654 4578877  234777877765543    445567766655555555 2 


Q ss_pred             --HHH---HHHHHHHHHHHHHHHHhCC---CCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCC
Q 019543          203 --MAL---RVEKQQDNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTK  273 (339)
Q Consensus       203 --~~~---r~~~~~~~a~~l~~~L~~~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~  273 (339)
                        .+.   ..++..++.+++.+.|+++   .+++.  .+                ..++ .+++.+.+ ....+|.+.|.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~----------------~~~g~~~~~~~~~-~~~~~~~~~l~  388 (430)
T 2x5f_A          328 QFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQA--YD----------------FNSGYFMAIKVHD-VDPEALRKHLI  388 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEE--CC----------------CCBSSEEEEEESS-SCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcee--eC----------------CCceEEEEeCCCC-CCHHHHHHHHH
Confidence              222   5666677888888888732   13321  11                1233 47777752 23456777776


Q ss_pred             c-ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec---cCCHHHHHHHHHHHHhc
Q 019543          274 Y-FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  336 (339)
Q Consensus       274 ~-~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg---~e~~~~li~~l~~al~~  336 (339)
                      . .|+.++.|                           .++.+|||++   .++.++.++.|.+++++
T Consensus       389 ~~~gi~v~~g---------------------------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          389 DKYSIGVIAL---------------------------NATDIRIAFSCVEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             HHHCEECEEC---------------------------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred             HhCCEEEecC---------------------------CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence            6 78876643                           1257999999   34566667777776654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.76  E-value=4.3e-17  Score=156.31  Aligned_cols=237  Identities=12%  Similarity=0.106  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhHhC----------CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH-----------------
Q 019543           57 RDALESLLAKLDK----------ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR-----------------  108 (339)
Q Consensus        57 ~~~le~~la~~~g----------~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~-----------------  108 (339)
                      ..+|++.++++++          .+..++++++++|+.++ ..+++|||+|+++++.|++...                 
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~  164 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCES  164 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCT
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCC
Confidence            6788888888875          34566666778898754 4578999999999987765431                 


Q ss_pred             -------------HH--------H----------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---c-c
Q 019543          109 -------------LL--------S----------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---P-L  140 (339)
Q Consensus       109 -------------~~--------~----------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~-~  140 (339)
                                   .+        +                      ++|+++|++||++||+|++|+.+.+. .   . .
T Consensus       165 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~  244 (428)
T 1iay_A          165 SNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIA  244 (428)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred             ccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHH
Confidence                         01        0                      88999999999999999999764321 1   1 1


Q ss_pred             c--CC-------Ce--EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------
Q 019543          141 E--LG-------AD--IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------  202 (339)
Q Consensus       141 ~--~~-------~D--i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------  202 (339)
                      .  ..       .|  +++.|+||.+|.+| ...|+++++++++++.++.....  ...++...+++...++.       
T Consensus       245 ~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~  321 (428)
T 1iay_A          245 EILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNF  321 (428)
T ss_dssp             HHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHH
Confidence            1  12       57  89999999998655 45678888555677777655432  23455544444433332       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH------HHHHHHHccCCc-c
Q 019543          203 MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL------ALSKHVVETTKY-F  275 (339)
Q Consensus       203 ~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~------~~~~~~~~~L~~-~  275 (339)
                      ++...++..++.+++.+.|+++ +++.  ++.               ..+.++++.+.+.      ....++.+.|.. .
T Consensus       322 ~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  383 (428)
T 1iay_A          322 LRESAMRLGKRHKHFTNGLEVV-GIKC--LKN---------------NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDV  383 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TCCB--CCC---------------SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCcc--cCC---------------CeeEEEEEechhhcCCCchhHHHHHHHHHHHhC
Confidence            3445556667788888888876 4431  121               1345677777432      244567777765 4


Q ss_pred             eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Q 019543          276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALR  335 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~---e~~~~li~~l~~al~  335 (339)
                      |+.++.|..+..                     ..++.+|||++.   ++.+.+++.|.++++
T Consensus       384 gi~v~~~~~~~~---------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~l~  425 (428)
T 1iay_A          384 KLNVSPGSSFEC---------------------QEPGWFRVCFANMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             CEECEEGGGGTC---------------------SSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             CEEEeCchhhCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence            888776542110                     024689999983   223344444544444

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.76  E-value=6.7e-18  Score=158.67  Aligned_cols=231  Identities=16%  Similarity=0.190  Sum_probs=156.7

Q ss_pred             CCchHHHHHHHHHhHhCC-CeEEEcCcHHHHHHHHHH----hc---CCC-CEEEEcCCCccchHH---------------
Q 019543           53 GNPTRDALESLLAKLDKA-DRALCFTSGMAALAAVTH----LL---GTG-EEIVAGDDLYGGTDR---------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~-~~~l~~~sG~~A~~~il~----ll---~~G-D~Vi~~~~~y~~~~~---------------  108 (339)
                      ..+...+|++++++++|. +++++++||++|+.+++.    +.   +|| |+|+++++.|++...               
T Consensus        68 ~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~  147 (375)
T 2eh6_A           68 ENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGF  147 (375)
T ss_dssp             CCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTT
T ss_pred             CCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCC
Confidence            356788999999999998 788899999999975442    34   788 999999988765310               


Q ss_pred             ----------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc--c
Q 019543          109 ----------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP--L  140 (339)
Q Consensus       109 ----------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~--~  140 (339)
                                      .++                             ++|.++|++||+++|+|++|+ .+.....  .
T Consensus       148 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~  227 (375)
T 2eh6_A          148 EPLVPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY  227 (375)
T ss_dssp             CSCCSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred             CCCCCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhh
Confidence                            011                             789999999999999999998 4332221  1


Q ss_pred             -cCC--CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 019543          141 -ELG--ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  217 (339)
Q Consensus       141 -~~~--~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l  217 (339)
                       ..+  .|++  |+||++++ | ...|++++++ ++++.++......+...++...+.+...|+.+....++..++++++
T Consensus       228 ~~~~~~~d~~--s~SK~~~~-g-~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l  302 (375)
T 2eh6_A          228 QHFNLKPDVI--ALAKGLGG-G-VPIGAILARE-EVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGNYF  302 (375)
T ss_dssp             GGGTCCCSEE--EECGGGGT-T-SCCEEEEEEH-HHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCEE--EEcccccC-C-CCeEEEEEcH-HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             223  6877  67799995 3 3456777764 5655554311112344567766666666766655667777888889


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCC
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .+.|++++. ..  .                .+.+.++++.+.+  ...++.+.|...|+.+..+               
T Consensus       303 ~~~L~~~~~-~~--~----------------~~~g~~~~~~~~~--~~~~~~~~l~~~gi~~~~~---------------  346 (375)
T 2eh6_A          303 KEKLKELGK-GK--V----------------KGRGLMLGLELER--ECKDYVLKALEKGLLINCT---------------  346 (375)
T ss_dssp             HHHHHHTTS-SE--E----------------EEETTEEEEECSS--CCHHHHHHHHHTTEECEEE---------------
T ss_pred             HHHHHHHhc-CC--c----------------eEEEEEEEEEEcC--cHHHHHHHHHHCCCEEecC---------------
Confidence            998887643 11  1                1246788888753  1345666665566655421               


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                  .++.+|||++...+++.++.+.++|++
T Consensus       347 ------------~~~~iRi~~~~~~~~~~i~~~~~~l~~  373 (375)
T 2eh6_A          347 ------------AGKVLRFLPPLIIQKEHIDRAISVLRE  373 (375)
T ss_dssp             ------------TTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                        136799999877777777777777764

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.75  E-value=2.6e-17  Score=160.81  Aligned_cols=171  Identities=20%  Similarity=0.180  Sum_probs=114.4

Q ss_pred             CCchHHHHH----HHHHhHhCCCe-----EEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------------
Q 019543           53 GNPTRDALE----SLLAKLDKADR-----ALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~~-----~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------------  107 (339)
                      +++..+++|    +++++++|.+.     .++++||++|+.+ +.++++|||+|+++++.|++..               
T Consensus        84 ~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G  163 (483)
T 1rv3_A           84 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATS  163 (483)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCccccc
Confidence            345566666    88999999873     4899999988876 5568999999999875443221               


Q ss_pred             -----------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCC-----cCc
Q 019543          108 -----------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVL-----SRP  139 (339)
Q Consensus       108 -----------------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~-----~~~  139 (339)
                                             ..+.                    ++|.++|++||++|++|++|+.|..     ..+
T Consensus       164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p  243 (483)
T 1rv3_A          164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP  243 (483)
T ss_dssp             HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG
T ss_pred             ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCC
Confidence                                   0110                    9999999999999999999975532     223


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHHHH--hcCCCCChHHHH--HHHhch-
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQN--AEGSGLAPFDCW--ICLRGV-  200 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~--------------~l~~~l~~~~~--~~~~~~~~~~a~--~~~~~l-  200 (339)
                      ++ ++|++++|+||+|+|+   .||+++++++              ++...+.....  ..|+...+..++  .++..+ 
T Consensus       244 ~~-~~div~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~  319 (483)
T 1rv3_A          244 FE-HCHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM  319 (483)
T ss_dssp             GG-TCSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT
T ss_pred             CC-CCcEEEecCcccCCCC---CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh
Confidence            33 6899999999999764   4689998864              12333322111  112222222222  122222 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          201 -KTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       201 -~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                       +.++.+.++..++++++.+.|+++ +++
T Consensus       320 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  347 (483)
T 1rv3_A          320 TPEFKEYQRQVVANCRALSAALVEL-GYK  347 (483)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhc-CCE
Confidence             245677888889999999999887 554

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.75  E-value=9.1e-17  Score=153.07  Aligned_cols=212  Identities=13%  Similarity=0.079  Sum_probs=135.2

Q ss_pred             CchHHHHHHHHHhHh------C--CCeEEEcCcHHHHHHHHH-HhcCCCC-----EEEEc-CCCccchHHHH--------
Q 019543           54 NPTRDALESLLAKLD------K--ADRALCFTSGMAALAAVT-HLLGTGE-----EIVAG-DDLYGGTDRLL--------  110 (339)
Q Consensus        54 ~~~~~~le~~la~~~------g--~~~~l~~~sG~~A~~~il-~ll~~GD-----~Vi~~-~~~y~~~~~~~--------  110 (339)
                      .....+|++.+++++      +  .++++++++|++|+.+++ .++++||     +|+++ .+.|++.....        
T Consensus        74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~  153 (417)
T 3g7q_A           74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS  153 (417)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence            344667888888775      2  357889999999998654 5789988     89987 77765543110        


Q ss_pred             ------------------------H------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----
Q 019543          111 ------------------------S------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----  137 (339)
Q Consensus       111 ------------------------~------------------------~~I~~la~~~g~~livD~a~a~g~~~-----  137 (339)
                                              .                        ++|+++|++||+++|+|++|+.+...     
T Consensus       154 ~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~  233 (417)
T 3g7q_A          154 ARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSE  233 (417)
T ss_dssp             CCCEEEEEGGGEEEEECCGGGCCCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSC
T ss_pred             ccCcccccCCcccccccCHHHhccccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccc
Confidence                                    0                        88999999999999999999753211     


Q ss_pred             -CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh------HHH-HHHH
Q 019543          138 -RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT------MAL-RVEK  209 (339)
Q Consensus       138 -~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~------~~~-r~~~  209 (339)
                       .+...+.+++++|+|| ++++| ...|+++++ +++.+.++......+...+++..+++...++.      ... ..+.
T Consensus       234 ~~~~~~~~~i~~~s~sK-~~~~G-~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  310 (417)
T 3g7q_A          234 ARPLWNPNIILCMSLSK-LGLPG-SRCGIIIAN-DKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPF  310 (417)
T ss_dssp             CCCCCCTTEEEEEESGG-GTCTT-SCCEEEECC-HHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHH
T ss_pred             cccCCCCCEEEEEechh-ccCCC-cceEEEEeC-HHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence             1112356899999999 56555 456788775 47888888777666655566554444333322      111 2334


Q ss_pred             HHHHHHHHHHHHhC-CCCce-EEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCc
Q 019543          210 QQDNAQKIAEFLAS-HPRVK-KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSV  284 (339)
Q Consensus       210 ~~~~a~~l~~~L~~-~~~i~-~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~  284 (339)
                      ..++.+.+.+.|++ ++.+. .+..|                ..+..+++.+.. .....++.+.|...|+.++.|..
T Consensus       311 ~~~~~~~~~~~l~~~l~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~  372 (417)
T 3g7q_A          311 YYQRVQQTIAIIRRYLSEERCLIHKP----------------EGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHY  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHCCTTTCEEECC----------------CBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGG
T ss_pred             HHHHHHHHHHHHHHhcccCCceeeCC----------------CcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchh
Confidence            45566667777765 44321 12222                135677777753 23355677777778998887653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.75  E-value=1.4e-16  Score=156.22  Aligned_cols=181  Identities=15%  Similarity=0.158  Sum_probs=119.5

Q ss_pred             CcccCCCCchHHHHHHHHHhHhC-----CCeEEEcCcHHHHHHHHH-HhcCCCC----EEEEcCCCccchHHHHH-----
Q 019543           47 YDYTRSGNPTRDALESLLAKLDK-----ADRALCFTSGMAALAAVT-HLLGTGE----EIVAGDDLYGGTDRLLS-----  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g-----~~~~l~~~sG~~A~~~il-~ll~~GD----~Vi~~~~~y~~~~~~~~-----  111 (339)
                      |..+.+..+.++++.+.+++..|     .+++++++++++|+..++ .++++||    +|+++.+.|......+.     
T Consensus       125 Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~  204 (498)
T 3ihj_A          125 YSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAI  204 (498)
T ss_dssp             ---CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCE
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCE
Confidence            33443333566677777766664     357888888899998655 4788875    99999998875543222     


Q ss_pred             -----------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 019543          112 -----------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR  138 (339)
Q Consensus       112 -----------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~  138 (339)
                                                                           ++|+++|++||++||+|++|+...+..
T Consensus       205 ~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~  284 (498)
T 3ihj_A          205 QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP  284 (498)
T ss_dssp             EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred             EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCC
Confidence                                                                 779999999999999999998765432


Q ss_pred             c--c-c-------CC------C-eEEEeccccccccCCCceEEEEEE--cChhHHHHHHHHHHhcCCCCChHHHHHHHhc
Q 019543          139 P--L-E-------LG------A-DIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       139 ~--~-~-------~~------~-Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~  199 (339)
                      .  . .       .+      . .|+++||||.+.|..+.++||++.  .++++++.+....... ...+....+++...
T Consensus       285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~q~a~~~~  363 (498)
T 3ihj_A          285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSGQAAMDIV  363 (498)
T ss_dssp             TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHH
Confidence            1  1 1       01      1 278899999995433456778774  4567888887766533 23333332222221


Q ss_pred             --------------hhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          200 --------------VKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       200 --------------l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                                    ++....+++++.++++++.+.|+++|+++
T Consensus       364 l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~  406 (498)
T 3ihj_A          364 VNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIH  406 (498)
T ss_dssp             TCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             hcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence                          22334556777888999999999888764

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.75  E-value=1.5e-16  Score=149.52  Aligned_cols=241  Identities=12%  Similarity=0.128  Sum_probs=151.9

Q ss_pred             hHHHHHHHHHhHhCC------CeEEEcCcHHHHHHHHH-Hhc---CCCCEEEEcC-CCccchH-HHHH------------
Q 019543           56 TRDALESLLAKLDKA------DRALCFTSGMAALAAVT-HLL---GTGEEIVAGD-DLYGGTD-RLLS------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~------~~~l~~~sG~~A~~~il-~ll---~~GD~Vi~~~-~~y~~~~-~~~~------------  111 (339)
                      ...+++++++++++.      +++++++||++|+.+++ .+.   ++||+|++.+ +.|+... ..+.            
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~  118 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL  118 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC
Confidence            456788889988875      35677788899998654 466   8999987763 3333221 1110            


Q ss_pred             --------------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-CcccCCCeEEEec
Q 019543          112 --------------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHS  150 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~~~~~~Di~~~S  150 (339)
                                                            ++|.++|++|  |+++|+|++|+.+... +....++|++++|
T Consensus       119 ~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  198 (385)
T 2bkw_A          119 KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA  198 (385)
T ss_dssp             STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred             CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEec
Confidence                                                  9999999999  9999999999876542 2223478999999


Q ss_pred             cccccccCCCceEEEEEEcChhHHH-HHH------------------HH-HHhc-C-----CCCChHHHHHHHhchhh--
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAK-ELY------------------FL-QNAE-G-----SGLAPFDCWICLRGVKT--  202 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~-~l~------------------~~-~~~~-~-----~~~~~~~a~~~~~~l~~--  202 (339)
                      +||+++|+.+.  |++++++ ++.+ .++                  .. .... +     ...+....+.+...++.  
T Consensus       199 ~~K~~~~~~G~--G~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  275 (385)
T 2bkw_A          199 SQKAIGAPAGL--SISLCSS-RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  275 (385)
T ss_dssp             SSSTTCCCSCE--EEEEECH-HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CccccccCCcc--eEEEEcH-HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99998865432  7787765 4554 431                  11 1111 1     23444433333333332  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHH-hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          203 ---MALRVEKQQDNAQKIAEFL-ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       203 ---~~~r~~~~~~~a~~l~~~L-~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                         ++...++.+++++++.+.| +++ +++. ..|. +..          ...+++++|.+.+   ..++.+.|...|+.
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~-~~~~-~~~----------~~~~~~~~~~~~~---~~~~~~~l~~~gi~  339 (385)
T 2bkw_A          276 EEGLHKRWDLHREMSDWFKDSLVNGL-QLTS-VSRY-PSN----------MSAHGLTAVYVAD---PPDVIAFLKSHGVV  339 (385)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTT-CCEE-SSCS-SST----------TBCSSCEEEECSC---HHHHHHHHHHTTEE
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHhc-Ccee-cccC-ccc----------ccCCceEEEecCC---HHHHHHHHHHCCeE
Confidence               3455677788899999999 876 5532 1111 000          0146789998865   45677777777888


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE-ec-------cCCHHHHHHHHHHHHhcC
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS-VG-------IEDVNDLISDLDKALRTG  337 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis-vg-------~e~~~~li~~l~~al~~~  337 (339)
                      ++.|..      +.                ..++.+||| ++       .|+.+.+++.|.++++++
T Consensus       340 v~~g~~------~~----------------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          340 IAGGIH------KD----------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQRK  384 (385)
T ss_dssp             CBCCCC------TT----------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC-
T ss_pred             EeCCCC------cc----------------cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHhc
Confidence            776532      10                124679999 66       355666677777766553

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.75  E-value=2.8e-17  Score=152.51  Aligned_cols=208  Identities=15%  Similarity=0.096  Sum_probs=135.4

Q ss_pred             chHHHHHHHHHhHhCCC----eEEEcCcHHHHHHHHHH-hcCCCCEEEEcCCCccch--HHHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD----RALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGT--DRLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~----~~l~~~sG~~A~~~il~-ll~~GD~Vi~~~~~y~~~--~~~~~----------------  111 (339)
                      +..+++++++++++|.+    .+++++||++|+..++. +++  |+|+++++.|++.  ....+                
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  110 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEP  110 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCC
Confidence            45789999999999973    45666778999987665 444  8999988877653  11111                


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-cCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|.++|++||+++|+|++|+.+.....+ ..+.|++++|++|++++
T Consensus       111 ~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~  190 (353)
T 2yrr_A          111 VDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA  190 (353)
T ss_dssp             CCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCC
T ss_pred             CCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccC
Confidence                                             99999999999999999999866432222 24679999999998876


Q ss_pred             CCCceEEEEEEcChhHHHHHH----------HH---H--HhcCCCCChHHHHHHHhchhh-----HHHHHHHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKELY----------FL---Q--NAEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKI  217 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l~----------~~---~--~~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~a~~l  217 (339)
                      +.+  .|++++++ ++.+.++          ..   .  .......+....+.+...++.     ++...++..++++++
T Consensus       191 ~~g--~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  267 (353)
T 2yrr_A          191 PPG--LAPIAASL-EARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWV  267 (353)
T ss_dssp             CSS--CEEEEECH-HHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCc--eEEEEECH-HHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            543  37888875 5665553          11   1  112233444433322233332     445567777888899


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      .+.|++. +++.+. |.              ...+.+++|.+++.....++.+.|...|+.++.|.
T Consensus       268 ~~~L~~~-g~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~  317 (353)
T 2yrr_A          268 LEELKAR-GFRPYP-KA--------------SPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGI  317 (353)
T ss_dssp             HHHHHHT-TCEESC-SS--------------SBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECC
T ss_pred             HHHHHHC-CCcccc-Cc--------------cCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCc
Confidence            9999876 554211 21              01356778887422234567777766788877554

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.75  E-value=3.9e-17  Score=155.75  Aligned_cols=206  Identities=21%  Similarity=0.213  Sum_probs=130.7

Q ss_pred             hHHHHH-HHHHhHhCCCeEE-EcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchH---H---------------------
Q 019543           56 TRDALE-SLLAKLDKADRAL-CFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTD---R---------------------  108 (339)
Q Consensus        56 ~~~~le-~~la~~~g~~~~l-~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~---~---------------------  108 (339)
                      ..+++. +.+++++|.+.+. +++||++|+..+ ..+++|||+|+++++.|++..   .                     
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTM  157 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTS
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccC
Confidence            445544 7789999998875 499999999754 457899999999999886611   0                     


Q ss_pred             ---------HHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----CcccCCCeEEEeccccc
Q 019543          109 ---------LLS--------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKF  154 (339)
Q Consensus       109 ---------~~~--------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~~~~~Di~~~S~sK~  154 (339)
                               .+.                    ++|.++|++||++||+|++|+.|...     ..+. .+|++++|+||+
T Consensus       158 ~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~  236 (425)
T 3ecd_A          158 LIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKT  236 (425)
T ss_dssp             SCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGG
T ss_pred             ccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcc
Confidence                     000                    99999999999999999998655331     2222 379999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHH--HH-hch-hhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWI--CL-RGV-KTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~--~~-~~l-~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ++|+   .||+++++++.+.+.+......  .+....+..+++  +. ..+ +.++...++..++.+++.+.|++. ++.
T Consensus       237 l~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  312 (425)
T 3ecd_A          237 LRGP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVD  312 (425)
T ss_dssp             GCCC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             cCCC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence            9753   4789988866666666554321  112222222222  11 112 345667777888888999999874 333


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G  282 (339)
                      . ..|               .+.+.++++.+.+. .....+.+.|+..|+.++.+
T Consensus       313 ~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~  351 (425)
T 3ecd_A          313 L-VTG---------------GTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKN  351 (425)
T ss_dssp             E-GGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEC
T ss_pred             e-ccC---------------CCCceEEEEEeCCCCCCHHHHHHHHHHcCCEeccc
Confidence            2 111               12466888876421 22345566666678887743

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.75  E-value=5.4e-17  Score=153.49  Aligned_cols=241  Identities=15%  Similarity=0.143  Sum_probs=153.4

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchH--HHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD--RLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~--~~~~-----------------  111 (339)
                      +..+++++.+++++|.+   .+++++||++|+.+++ .++++||+|+++++.|.+..  ...+                 
T Consensus        51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  130 (396)
T 2ch1_A           51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF  130 (396)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCC
Confidence            45789999999999975   3667788899998644 57899999999999888753  1211                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|++||+++|+|++|+.|... .....++|+++.|++|+++++
T Consensus       131 d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~  210 (396)
T 2ch1_A          131 SLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAP  210 (396)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCC
T ss_pred             CHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCC
Confidence                                            89999999999999999999866432 112346799999999998866


Q ss_pred             CCceEEEEEEcChhHHHHHHHH--------------HHhc---------CCCCChHHHHHHHhchh-----hHHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYFL--------------QNAE---------GSGLAPFDCWICLRGVK-----TMALRVEKQ  210 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~--------------~~~~---------~~~~~~~~a~~~~~~l~-----~~~~r~~~~  210 (339)
                      .+.  |++++++ ++++.+...              +..+         ..+.+......+...++     .++...++.
T Consensus       211 ~g~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~  287 (396)
T 2ch1_A          211 PGI--TPISISP-KALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRR  287 (396)
T ss_dssp             SSC--EEEEECH-HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             CCe--EEEEECH-HHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            433  6887765 566655321              1111         12233332222222232     245567777


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCc-ceeecccCCccccee
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKY-FSITVSFGSVKSLIS  289 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~-~~i~v~~G~~~s~~~  289 (339)
                      .++++++.+.|+++ +++. ..|    ...+        ..+.+++|.++......++.+.|.. .|+.++.|..     
T Consensus       288 ~~~~~~l~~~L~~~-g~~~-~~~----~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~-----  348 (396)
T 2ch1_A          288 IECAQILYEGLGKM-GLDI-FVK----DPRH--------RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLG-----  348 (396)
T ss_dssp             HHHHHHHHHHHHHH-TCCB-SSC----SGGG--------BCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCG-----
T ss_pred             HHHHHHHHHHHHHC-CCee-ccC----Cccc--------cCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCcc-----
Confidence            78888899988876 4431 111    0000        1234788887522234567777754 4887765431     


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEe-cc----CCHHHHHHHHHHHHh
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISV-GI----EDVNDLISDLDKALR  335 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~----e~~~~li~~l~~al~  335 (339)
                       +                 ..++.+|||+ +.    |+.+.+++.|.++++
T Consensus       349 -~-----------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~  381 (396)
T 2ch1_A          349 -P-----------------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK  381 (396)
T ss_dssp             -G-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             -c-----------------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence             1                 1347899999 54    334555566655554

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.75  E-value=3.4e-17  Score=158.34  Aligned_cols=245  Identities=22%  Similarity=0.190  Sum_probs=151.6

Q ss_pred             CCchHHHHH----HHHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccch--------H-----------
Q 019543           53 GNPTRDALE----SLLAKLDKADRALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGT--------D-----------  107 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~--------~-----------  107 (339)
                      +.+..+.+|    +++++++|.+.+.+ ++||+.|+.+ +..+++|||+|+++++.|++.        .           
T Consensus        85 g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (447)
T 3h7f_A           85 GCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYG  164 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcC
Confidence            344444444    89999999998887 9999999975 455899999999998765441        0           


Q ss_pred             --------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCC-----CcCcccCCCeEEE
Q 019543          108 --------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPV-----LSRPLELGADIVM  148 (339)
Q Consensus       108 --------------~~~~--------------------~~I~~la~~~g~~livD~a~a~g~-----~~~~~~~~~Di~~  148 (339)
                                    ..+.                    ++|.++|++||++||+|++|..|.     ...++. ++|+++
T Consensus       165 ~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~-~~di~~  243 (447)
T 3h7f_A          165 VDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP-HADVVS  243 (447)
T ss_dssp             CCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSEEE
T ss_pred             cCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC-CCcEEE
Confidence                          0110                    999999999999999999986542     222332 579999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhc--CCCCChHHHHH--HHh-ch-hhHHHHHHHHHHHHHHHHHHHh
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE--GSGLAPFDCWI--CLR-GV-KTMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~--~~~~~~~~a~~--~~~-~l-~~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      +|+||+++|+   .||++++++ ++.+.+......+  +....+..+++  ++. .+ +.++.+.++..++++++.+.|+
T Consensus       244 ~s~sK~l~G~---~gG~i~~~~-~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  319 (447)
T 3h7f_A          244 TTVHKTLGGG---RSGLIVGKQ-QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLM  319 (447)
T ss_dssp             EESSGGGCCC---SCEEEEECG-GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCcCCCCC---CeEEEEECH-HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999854   578998875 6777776553322  22222222222  222 22 2456778888899999999998


Q ss_pred             CC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccce-eccccccC
Q 019543          223 SH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLI-SMPCFMSH  296 (339)
Q Consensus       223 ~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~-~~p~~~~h  296 (339)
                      +.    +++..+. +               ...+.++++.+.+. .....+.+.|+..|+.++.... ... ..|     
T Consensus       320 ~~~~~~~g~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i-~~~~~~p-----  377 (447)
T 3h7f_A          320 APDVAKAGVSVVS-G---------------GTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAV-PNDPRPP-----  377 (447)
T ss_dssp             SHHHHHTTCEEGG-G---------------SCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC----------------
T ss_pred             hccccCCCeEEec-C---------------CCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccC-CCCCCCC-----
Confidence            75    3443221 1               11345677766321 1223334445556777662110 000 011     


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEec--------cCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVG--------IEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg--------~e~~~~li~~l~~al~~  336 (339)
                                  ..++.+||+..        .++.+.+++.|.++|+.
T Consensus       378 ------------~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          378 ------------MVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             ---------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             ------------CCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence                        12456999864        35566667777776653

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.74  E-value=4.7e-17  Score=152.83  Aligned_cols=237  Identities=16%  Similarity=0.098  Sum_probs=147.9

Q ss_pred             chHHHHHHHHHhHhCCC---eEEE-cCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHH--HHH----------------
Q 019543           55 PTRDALESLLAKLDKAD---RALC-FTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDR--LLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~-~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~--~~~----------------  111 (339)
                      +..+++++++++++|.+   +.++ ++||++|+.++ ..+++|||+|+++++.|.+...  ...                
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~  131 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKK  131 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCC
Confidence            56789999999999875   4555 56779999854 4578999999998876654321  111                


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-ccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|++||+++|+|++++.+..... ...++|++++|++|+++++
T Consensus       132 ~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~  211 (376)
T 3f0h_A          132 LTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACP  211 (376)
T ss_dssp             CCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCC
T ss_pred             CCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCC
Confidence                                            9999999999999999999987654222 2346899999999999954


Q ss_pred             CCceEEEEEEcChhHHHHHHHHH-------------Hh--c--CCCCChHHHHH---HHhchhh---HHHHHHHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYFLQ-------------NA--E--GSGLAPFDCWI---CLRGVKT---MALRVEKQQDNAQ  215 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~~-------------~~--~--~~~~~~~~a~~---~~~~l~~---~~~r~~~~~~~a~  215 (339)
                      .+  .|++++++ ++.+.+....             ..  .  ....+....+.   ++..++.   ++...++..++++
T Consensus       212 ~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  288 (376)
T 3f0h_A          212 PG--ISVIVLAP-RGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAA  288 (376)
T ss_dssp             SS--CEEEEECH-HHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             Cc--eEEEEECH-HHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33  36777764 6666654310             00  0  11222211122   2222222   4556666777888


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceeccccc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~~~  294 (339)
                      ++.+.|++++ +. + .+.   .           ....++.+...+ ....++.+.|... |+.++.|..      +   
T Consensus       289 ~l~~~L~~~~-~~-~-~~~---~-----------~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~------~---  341 (376)
T 3f0h_A          289 DFRAKIKDLP-FE-L-VSE---S-----------PANGVTSVHPTT-ANAYDIFLKLKDEYGIWICPNGG------E---  341 (376)
T ss_dssp             HHHHHTTTSS-EE-E-CCS---S-----------BBTTEEEEEESS-SCHHHHHHHHHHHSSEECEECCG------G---
T ss_pred             HHHHHHHHcC-Cc-c-Ccc---c-----------cCceEEEEeCCC-CCHHHHHHHHHHhCCEEEecCcc------c---
Confidence            8888888763 22 1 111   0           123455454322 2345677777666 888775521      1   


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                    ..++.+|||++...+++.++.+.++|+
T Consensus       342 --------------~~~~~lRis~~~~~t~e~i~~~~~~l~  368 (376)
T 3f0h_A          342 --------------MKDTIFRVGHIGALTHEDNTTLVNAFK  368 (376)
T ss_dssp             --------------GTTTCEEEECCSSCCHHHHHHHHHHHH
T ss_pred             --------------cCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence                          134689999987555555555544443

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.74  E-value=4.2e-17  Score=155.26  Aligned_cols=204  Identities=24%  Similarity=0.242  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhHhCCCeE-EEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchH---------------------------
Q 019543           57 RDALESLLAKLDKADRA-LCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTD---------------------------  107 (339)
Q Consensus        57 ~~~le~~la~~~g~~~~-l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~---------------------------  107 (339)
                      .+..++.+++++|.+.. ++++||++|+.++ ..+++|||+|+++.+.|++..                           
T Consensus        78 ~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  157 (420)
T 3gbx_A           78 EQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKID  157 (420)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCC
T ss_pred             HHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcC
Confidence            33455789999998866 4589999998754 558999999999887665411                           


Q ss_pred             -----HHHH--------------------HHHHHHHHHcCCEEEEeCCcCCCCC-----cCcccCCCeEEEecccccccc
Q 019543          108 -----RLLS--------------------RKIAEMAHAHGALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       108 -----~~~~--------------------~~I~~la~~~g~~livD~a~a~g~~-----~~~~~~~~Di~~~S~sK~l~g  157 (339)
                           ..+.                    ++|.++|++||+++|+|++|+.+..     ..... ..|++++|+||+++|
T Consensus       158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g  236 (420)
T 3gbx_A          158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAG  236 (420)
T ss_dssp             HHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCS
T ss_pred             HHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCC
Confidence                 0010                    9999999999999999999875543     11222 479999999999975


Q ss_pred             CCCceEEEEEEcC--hhHHHHHHHHHHh--cCCCCChHHHHH--HH-hch-hhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          158 HSDVMAGVLAVKG--ERLAKELYFLQNA--EGSGLAPFDCWI--CL-RGV-KTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       158 ~~~~~gG~v~~~~--~~l~~~l~~~~~~--~~~~~~~~~a~~--~~-~~l-~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      +   .||++++++  +.+.+.+......  .+....+..+++  +. ..+ +.++.+.++..++++++.+.|++. ++..
T Consensus       237 ~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  312 (420)
T 3gbx_A          237 P---RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKV  312 (420)
T ss_dssp             C---SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             C---CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCee
Confidence            4   368998876  2565655543211  122222222221  22 222 345667788888899999999873 4432


Q ss_pred             EecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeeccc
Q 019543          230 VNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       230 v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~  281 (339)
                      +. +               .+.++++++.+.+. .....+.+.|+..|+.++.
T Consensus       313 ~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~  349 (420)
T 3gbx_A          313 VS-G---------------GTENHLFLLDLVDKNLTGKEADAALGRANITVNK  349 (420)
T ss_dssp             GG-G---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEE
T ss_pred             cc-C---------------CCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEecc
Confidence            11 1               12466788876431 1234555566666877664

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.74  E-value=8.4e-17  Score=152.12  Aligned_cols=241  Identities=16%  Similarity=0.152  Sum_probs=149.4

Q ss_pred             chHHHHHHHHHhHhCCCeEEEc-CcHHHHHHHHHHhcCCCCEEEEcCCCccchH--------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCF-TSGMAALAAVTHLLGTGEEIVAGDDLYGGTD--------------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~-~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~--------------------------  107 (339)
                      ...+++++.+++++|.++.++| +||++|+.+++.++++||+|++.++.|++..                          
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~  114 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTE  114 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccc
Confidence            4678899999999998766655 5889999876677789999999776443210                          


Q ss_pred             --------------HHHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEE
Q 019543          108 --------------RLLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIV  147 (339)
Q Consensus       108 --------------~~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~  147 (339)
                                    ..+.                         ++|.++|++||+++++|++++ |.. .+...+++|++
T Consensus       115 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~  193 (379)
T 3ke3_A          115 APKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVL  193 (379)
T ss_dssp             SCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEE
T ss_pred             ccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEE
Confidence                          0111                         799999999999999999998 643 22223588999


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHH------------H----Hh------cCCCCChHHHHHHHhchhh---
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFL------------Q----NA------EGSGLAPFDCWICLRGVKT---  202 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~------------~----~~------~~~~~~~~~a~~~~~~l~~---  202 (339)
                      ++|++|+++++.+  +|++++++ ++.+.+...            +    ..      +..+.++...+.+..+++.   
T Consensus       194 ~~s~~K~l~~~~g--~g~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~  270 (379)
T 3ke3_A          194 ISAPQKGWSSTPC--AGLVMLSA-AAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE  270 (379)
T ss_dssp             EECTTTTTCSCCC--EEEEEECH-HHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             EecchhhcCCCCc--eEEEEECH-HHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999987643  57888775 566655421            0    00      1124444433333333332   


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCcceeec
Q 019543          203 --MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       203 --~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                        ++.+.++..++++++.+.|+++ +++.+. |.              ...++ +..+..++.+.  .+.+.|++.|+.+
T Consensus       271 ~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~-~~--------------~~~~~~i~~~~~~~~~~--~~~~~L~~~Gi~v  332 (379)
T 3ke3_A          271 IGFDILRDAQWELGNRVRKVLTDK-GIESVA-AE--------------GFEAPGVVVSYTERDDM--HKGSAFAEAGLQI  332 (379)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHT-TCCBSB-CT--------------TCBCSSEEEEECSCHHH--HSSHHHHHTTCCC
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHc-CCEecC-Cc--------------cccCceEEEEccCCcch--HHHHHHHHCCeEE
Confidence              3556667778888999999876 343211 10              01234 44444544332  2345566678877


Q ss_pred             ccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC----CHHHHHHHHHHHHh
Q 019543          280 SFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE----DVNDLISDLDKALR  335 (339)
Q Consensus       280 ~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e----~~~~li~~l~~al~  335 (339)
                      +.|..      |.. ..   +        ...+.+|||++..    +.+.+++.|.++++
T Consensus       333 ~~g~~------~~~-~~---~--------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~  374 (379)
T 3ke3_A          333 AAGVP------LKV-GE---P--------DNFKTFRLGLFGLDKLTDIDGTVERFEKALD  374 (379)
T ss_dssp             EECCC------CSS-CC---C--------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred             eCCcc------ccc-cc---c--------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence            65531      111 00   0        1357899999764    44555555555544

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.74  E-value=2.2e-17  Score=159.47  Aligned_cols=236  Identities=14%  Similarity=0.132  Sum_probs=155.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hc---------CCC-CEEEEcCCCccchHH-------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LL---------GTG-EEIVAGDDLYGGTDR-------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll---------~~G-D~Vi~~~~~y~~~~~-------------  108 (339)
                      .++...+|++++++++|.+.+++++||++|+.+++. +.         .+| |+|++.++.|++...             
T Consensus       116 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~  195 (439)
T 2oat_A          116 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD  195 (439)
T ss_dssp             EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence            357889999999999999999999999999985443 22         367 999998888765310             


Q ss_pred             ----------------------HH-H-------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc
Q 019543          109 ----------------------LL-S-------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP  139 (339)
Q Consensus       109 ----------------------~~-~-------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~  139 (339)
                                            .+ .                         ++|.++|++||++||+||+|. .+..+..
T Consensus       196 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~  275 (439)
T 2oat_A          196 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW  275 (439)
T ss_dssp             TSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcc
Confidence                                  01 0                         899999999999999999994 2211221


Q ss_pred             -----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHH
Q 019543          140 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQD  212 (339)
Q Consensus       140 -----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~  212 (339)
                           .....|++  |+||++++ |...+|++++++ ++++.+.......+...+|+.++.+...++.+.  ...++.++
T Consensus       276 ~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  351 (439)
T 2oat_A          276 LAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDD-DIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK  351 (439)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECH-HHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hhHHHhCCCCcEE--EecccccC-CCCCeEEEEECH-HHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence                 12245866  88999995 313467888874 566555432112234567877776666666553  34566677


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccCCcccceec
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      +.+++.+.|+++. ...+..               .++.|.++++.+.+.  ..+.++.+.|.+.|+.++.+        
T Consensus       352 ~~~~l~~~L~~l~-~~~~~~---------------~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~--------  407 (439)
T 2oat_A          352 LGIILRNELMKLP-SDVVTA---------------VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT--------  407 (439)
T ss_dssp             HHHHHHHHHTTSC-TTTEEE---------------EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS--------
T ss_pred             HHHHHHHHHHHhc-CCCcEE---------------EEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC--------
Confidence            8888888887752 111100               123577888887542  23456777776667765421        


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                         .++.+||++++..+++.++.+.++|+
T Consensus       408 -------------------~~~~iRi~~~~~~t~e~i~~~l~~l~  433 (439)
T 2oat_A          408 -------------------HGDIIRFAPPLVIKEDELRESIEIIN  433 (439)
T ss_dssp             -------------------SSSEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             -------------------CCCEEEEECccCCCHHHHHHHHHHHH
Confidence                               23679999987666665555555554

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.74  E-value=2e-16  Score=151.36  Aligned_cols=242  Identities=14%  Similarity=0.108  Sum_probs=151.1

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHH--HHH-HhcC--C---------CCEEEEcCCCccchHHHHH-------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALA--AVT-HLLG--T---------GEEIVAGDDLYGGTDRLLS-------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~--~il-~ll~--~---------GD~Vi~~~~~y~~~~~~~~-------  111 (339)
                      +...+|++.++++++.+  ++++++++++|+.  +++ .++.  |         ||+|+++++.|.+....+.       
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~  149 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELL  149 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEE
Confidence            44678999999999864  6777777788986  544 4667  7         5999999999877653322       


Q ss_pred             ----------------------------------------------HHHHHHH-HHcCCEEEEeCCcCCCCCcC------
Q 019543          112 ----------------------------------------------RKIAEMA-HAHGALLLVDNSIMSPVLSR------  138 (339)
Q Consensus       112 ----------------------------------------------~~I~~la-~~~g~~livD~a~a~g~~~~------  138 (339)
                                                                    ++|+++| ++||+++|+|++|+...+..      
T Consensus       150 ~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~  229 (423)
T 3ez1_A          150 TVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEP  229 (423)
T ss_dssp             EEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCC
T ss_pred             eccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCC
Confidence                                                          5899999 99999999999998432211      


Q ss_pred             --cc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------
Q 019543          139 --PL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------  202 (339)
Q Consensus       139 --~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------  202 (339)
                        ..       ..+.++++.||||+ .++| ...|++++++ ++++.++......+...++....++...++.       
T Consensus       230 ~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  306 (423)
T 3ez1_A          230 VNFVVLARDAGYPDRAFVFASTSKI-TFAG-AGLGFVASSE-DNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEG  306 (423)
T ss_dssp             CCHHHHHHHHTCTTSEEEEEESTTT-SCSS-SSCEEEEECH-HHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHHHH
T ss_pred             cchhhhhhccCCCCeEEEEeCchhh-ccCC-cceEEEEeCH-HHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchHHH
Confidence              11       22457999999998 3444 4567888764 7888888777666666676654444333332       


Q ss_pred             -HHHHHHHHHHHHHHHHHHH----hCCC-CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcce
Q 019543          203 -MALRVEKQQDNAQKIAEFL----ASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFS  276 (339)
Q Consensus       203 -~~~r~~~~~~~a~~l~~~L----~~~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~  276 (339)
                       +....+...++.+.+.+.|    ...+ .+. +..|                ..+..+++.+.+. ....+.+.|+..|
T Consensus       307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-~~~p----------------~~g~~~~~~~~~~-~~~~~~~~l~~~g  368 (423)
T 3ez1_A          307 LMRDHAAIIAPKFRAVDEVLRAELGEGGEYAT-WTLP----------------KGGYFISLDTAEP-VADRVVKLAEAAG  368 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEE-ECCC----------------SBSSCEEEEESSS-CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcCCCceE-EeCC----------------CccEEEEEECCCC-cHHHHHHHHHHCC
Confidence             2222333333444444444    3343 232 2223                1356778877532 3456667777789


Q ss_pred             eeccc-CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC---HHHHHHHHHHHHh
Q 019543          277 ITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED---VNDLISDLDKALR  335 (339)
Q Consensus       277 i~v~~-G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~---~~~li~~l~~al~  335 (339)
                      +.++. |..+..- .                 +..++.+|||++..+   .++.++.|.++++
T Consensus       369 v~v~~~g~~~~~~-~-----------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~  413 (423)
T 3ez1_A          369 VSLTPAGATYPAG-Q-----------------DPHNRNLRLAPTRPPVEEVRTAMQVVAACIR  413 (423)
T ss_dssp             EECCCTTTTSSTT-C-----------------CSSSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             cEEecCcccccCC-C-----------------CCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            98886 3322100 0                 013578999998643   3344555555554

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.73  E-value=7.4e-17  Score=154.69  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=150.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC-------CC-CEEEEcCCCccchHH---------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG-------TG-EEIVAGDDLYGGTDR---------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~-------~G-D~Vi~~~~~y~~~~~---------------  108 (339)
                      .++..++|+++|++++|.+++++++||++|+.+++. +..       +| |+|++.++.|++...               
T Consensus        97 ~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~  176 (420)
T 2pb2_A           97 TNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF  176 (420)
T ss_dssp             CCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred             CCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence            467899999999999999999999999999986554 433       77 589998888764310               


Q ss_pred             ----------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc---
Q 019543          109 ----------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP---  139 (339)
Q Consensus       109 ----------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~---  139 (339)
                                      .++                             ++|.++|++||++||+||+|. .+..+..   
T Consensus       177 ~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~  256 (420)
T 2pb2_A          177 GPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAY  256 (420)
T ss_dssp             SSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHH
T ss_pred             CCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHH
Confidence                            000                             889999999999999999994 2222222   


Q ss_pred             --ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHH
Q 019543          140 --LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQ  215 (339)
Q Consensus       140 --~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~  215 (339)
                        .....|++  |+||++++ | ...|++++++ ++++.++......+...+++.++.+...|+.+  +...++.+++.+
T Consensus       257 ~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~-~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~  331 (420)
T 2pb2_A          257 MHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQ-EIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQ  331 (420)
T ss_dssp             HHHTCCCSEE--EECGGGGT-T-SCCEEEEECH-HHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             HhcCCCCCeE--EecccccC-C-CceEEEEEhH-HHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              12346876  68999994 4 3456777764 56655543222223456787777666666554  345666677778


Q ss_pred             HHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH--HHHHHHccCCcceeecccCCccccee
Q 019543          216 KIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA--LSKHVVETTKYFSITVSFGSVKSLIS  289 (339)
Q Consensus       216 ~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~--~~~~~~~~L~~~~i~v~~G~~~s~~~  289 (339)
                      ++.+.|++.    +.+..+                  ++.|.+++|.+.+..  ...++.+.|...|+.++.|       
T Consensus       332 ~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~-------  386 (420)
T 2pb2_A          332 QFVQHLQAIDEQFDIFSDI------------------RGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA-------  386 (420)
T ss_dssp             HHHHHHHHHHHHHCCEEEE------------------EEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-------
T ss_pred             HHHHHHHHHHhcCCCeEEE------------------EecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-------
Confidence            888877653    222111                  225678888875432  3567777776677765532       


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                                          .++.+|||+.+..+++.++.+.++|
T Consensus       387 --------------------~~~~iRl~~~~~~t~eei~~~~~~l  411 (420)
T 2pb2_A          387 --------------------GADVMRFAPSLVVEEADIHEGMQRF  411 (420)
T ss_dssp             --------------------STTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             --------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence                                1367999976544444444444443

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.73  E-value=5.7e-17  Score=156.17  Aligned_cols=234  Identities=12%  Similarity=0.145  Sum_probs=151.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh----------cCCC-CEEEEcCCCccchHH-------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL----------LGTG-EEIVAGDDLYGGTDR-------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l----------l~~G-D~Vi~~~~~y~~~~~-------------  108 (339)
                      .++...+|+++|++++|.+.+++++||++|+.+++.+          +.+| |+|++.++.|++...             
T Consensus       105 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~  184 (433)
T 1z7d_A          105 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS  184 (433)
T ss_dssp             EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------------
T ss_pred             CCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccc
Confidence            3567899999999999999999999999999864432          2478 999999888765310             


Q ss_pred             ----------------------HH-H-------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc
Q 019543          109 ----------------------LL-S-------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP  139 (339)
Q Consensus       109 ----------------------~~-~-------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~  139 (339)
                                            .+ .                         ++|.++|++||++||+||+|. .+..+..
T Consensus       185 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~  264 (433)
T 1z7d_A          185 NFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL  264 (433)
T ss_dssp             -------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             cCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc
Confidence                                  11 0                         899999999999999999995 2221221


Q ss_pred             -----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHH
Q 019543          140 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQD  212 (339)
Q Consensus       140 -----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~  212 (339)
                           .....|++  |+||++++ |...+|++++++ ++++.+.......+...+|+.++.+...|+.+.  ...++..+
T Consensus       265 ~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~-~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          265 LCVHHYNVKPDVI--LLGKALSG-GHYPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             hhhHhcCCCCCEE--EECccccC-CCCCeEEEEECH-HHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence                 12345776  78999994 313467888774 566554432112234567777776666666543  24556667


Q ss_pred             HHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccc
Q 019543          213 NAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       213 ~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      +.+++.+.|++.    +.+..                  .++.|.+++|.+.+. ..+.++.+.|...|+.++.+     
T Consensus       341 ~~~~l~~~L~~l~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~-----  397 (433)
T 1z7d_A          341 LGGPFLENLKRELKDSKIVRD------------------VRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV-----  397 (433)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEE------------------EEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE-----
T ss_pred             HHHHHHHHHHHHHHhCCCeEE------------------EEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC-----
Confidence            777777777643    22111                  123577899988543 23557777776667765421     


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                                            ..+.+|+++++..+++.++.+.++|+
T Consensus       398 ----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~  423 (433)
T 1z7d_A          398 ----------------------HDKTIRLTPPLCITKEQLDECTEIIV  423 (433)
T ss_dssp             ----------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence                                  13679999887666555555555554

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.72  E-value=1.5e-16  Score=151.87  Aligned_cols=230  Identities=15%  Similarity=0.131  Sum_probs=141.8

Q ss_pred             HHHHHHHHHh----HhCCC---eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           57 RDALESLLAK----LDKAD---RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        57 ~~~le~~la~----~~g~~---~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ..+|++.+++    ..+.+   ++++++||++|+..+ ..+++|||+|+++++.|.+....+.                 
T Consensus        82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~  161 (418)
T 3rq1_A           82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNN  161 (418)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSS
T ss_pred             hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCC
Confidence            3455555555    44666   788888889999864 4588999999999998876542221                 


Q ss_pred             -----------------------------------------HHHHHHHH------HcCCEEEEeCCcCCCCCc-C---c-
Q 019543          112 -----------------------------------------RKIAEMAH------AHGALLLVDNSIMSPVLS-R---P-  139 (339)
Q Consensus       112 -----------------------------------------~~I~~la~------~~g~~livD~a~a~g~~~-~---~-  139 (339)
                                                               ++|+++|+      +||+++|+|++|...... .   . 
T Consensus       162 ~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~  241 (418)
T 3rq1_A          162 FNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAF  241 (418)
T ss_dssp             BCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGG
T ss_pred             cCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHH
Confidence                                                     67777777      899999999998532221 1   1 


Q ss_pred             cc----CCCe---EEEeccccccccCCCceEEEEEE--cChhHHHHHHHHHHhc----CCCCChHHHHHHHhchhh----
Q 019543          140 LE----LGAD---IVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYFLQNAE----GSGLAPFDCWICLRGVKT----  202 (339)
Q Consensus       140 ~~----~~~D---i~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~~~~~~~----~~~~~~~~a~~~~~~l~~----  202 (339)
                      ..    ...|   ++++|+||.++.+|.. .|++++  +++++++.+.......    ....+.....++...++.    
T Consensus       242 ~~~~~~~~~~~~~i~~~S~sK~~~~~G~r-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  320 (418)
T 3rq1_A          242 FNKFSHLPKEILTCVCYSLSKGFTMYGQR-VGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKF  320 (418)
T ss_dssp             GGGGTTCCTTEEEEEEEESTTTTTCCSSC-CEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhcCCCceEEEEEeCCCCCcCcCCc-ceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHH
Confidence            11    1123   7889999999877654 567766  2457888777654322    133455544444333322    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCcc
Q 019543          203 ------MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYF  275 (339)
Q Consensus       203 ------~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~~  275 (339)
                            .....++..++.+++.+.|+.+ ++..  ++                ..++ .+++.+.+   ..+|.+.|.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~--~~----------------~~~~~~~~~~~~~---~~~~~~~l~~~  378 (418)
T 3rq1_A          321 KEYEAERNCYYQLIRDRADIFKQEAAQV-GLPM--LP----------------YRGGFFITIPTDS---ANAICEELKKE  378 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCC--CC----------------CCSSSEEEEECTT---HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC--CC----------------CCceEEEEcCCCC---HHHHHHHHHhC
Confidence                  1233455566777788888765 3321  11                1233 44444543   34566667677


Q ss_pred             eeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc---CCHHHHHHHHHHHHhcC
Q 019543          276 SITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALRTG  337 (339)
Q Consensus       276 ~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~---e~~~~li~~l~~al~~~  337 (339)
                      |+.+..|                            .+.+|||++.   ++.+..++.|.++++++
T Consensus       379 gi~v~~g----------------------------~~~iRis~~~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          379 HIYVIAL----------------------------ANGIRIAACGIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             TEECEEC----------------------------SSEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred             CEEEecC----------------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            7766532                            2569999873   33455577777777654

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.72  E-value=4.4e-17  Score=154.40  Aligned_cols=234  Identities=17%  Similarity=0.198  Sum_probs=153.9

Q ss_pred             CCchHHHHHHHHHhHh--CCCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchHH-------------------
Q 019543           53 GNPTRDALESLLAKLD--KADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTDR-------------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~--g~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~~-------------------  108 (339)
                      ..+..+++++++++++  +.+++++++||++|+.+++. +.  .+||+|++.++.|++...                   
T Consensus        85 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~  164 (395)
T 1vef_A           85 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV  164 (395)
T ss_dssp             CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS
T ss_pred             CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCC
Confidence            4678999999999999  45678889999999986544 32  689999998887754210                   


Q ss_pred             ------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----cc
Q 019543          109 ------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LE  141 (339)
Q Consensus       109 ------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~  141 (339)
                                  .++                             ++|.++|++||++||+|++|+ .+..+..     ..
T Consensus       165 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~  244 (395)
T 1vef_A          165 EPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG  244 (395)
T ss_dssp             SCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred             CCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcC
Confidence                        000                             889999999999999999998 2222221     12


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAE  219 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~  219 (339)
                      ...|++  |+||++++ | ...|++++++ ++++.++......+...++..++.+...++.+.  ...++..++++++.+
T Consensus       245 ~~~d~~--s~sK~~~~-g-~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~  319 (395)
T 1vef_A          245 IVPDIL--TLAKALGG-G-VPLGVAVMRE-EVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFME  319 (395)
T ss_dssp             CCCSEE--EECGGGGT-T-SSCEEEEEEH-HHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCCEE--EEcccccC-C-CceEEEEehH-HHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            346866  78999996 4 3456777765 465555431112234567776666665665543  245666778888888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCC-cceeecccCCcccceeccccccCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTK-YFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      .|++.+. ..+..               ..+.+.+++|.+.+.  ..++.+.|. ..|+.++.+                
T Consensus       320 ~l~~~~~-~~~~~---------------~~~~g~~~~~~~~~~--~~~l~~~l~~~~gi~v~~~----------------  365 (395)
T 1vef_A          320 KLRAIPS-PKIRE---------------VRGMGLMVGLELKEK--AAPYIARLEKEHRVLALQA----------------  365 (395)
T ss_dssp             HHHTSCC-TTEEE---------------EEEETTEEEEEESSC--SHHHHHHHHHHHCEECEES----------------
T ss_pred             HHHHhhc-CceEE---------------EEEEEEEEEEEEcCh--HHHHHHHHHHHCCeEEecC----------------
Confidence            8887642 10100               012467889888532  346777776 677766532                


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                 .++.+|||++...+++.++.+.++|++
T Consensus       366 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~  392 (395)
T 1vef_A          366 -----------GPTVIRFLPPLVIEKEDLERVVEAVRA  392 (395)
T ss_dssp             -----------STTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             -----------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                       136799999877766666666666653

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.72  E-value=4.2e-16  Score=148.16  Aligned_cols=209  Identities=14%  Similarity=0.067  Sum_probs=134.3

Q ss_pred             chHHHHHHHHHhH--hC---CCeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKL--DK---ADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~--~g---~~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +...+|++.++++  .|   .+++++++++++|+.+++.+++|||+|+++++.|++....+.                  
T Consensus        75 ~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  154 (400)
T 3asa_A           75 FGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF  154 (400)
T ss_dssp             TCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTT
T ss_pred             CCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCc
Confidence            3567899999998  46   346777777789988766777999999999998876553322                  


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c----CcccC----CCeEEEecc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S----RPLEL----GADIVMHSA  151 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~-~----~~~~~----~~Di~~~S~  151 (339)
                                                     ++|+++|++||+++|+|++|+.... .    .....    ..++++.|+
T Consensus       155 ~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  234 (400)
T 3asa_A          155 FPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSF  234 (400)
T ss_dssp             CCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEEC
T ss_pred             ccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecc
Confidence                                           6899999999999999999973221 1    11122    235899999


Q ss_pred             ccccccCCCceEEEEEEcChhH-------HHHHHHHHH-hcCCCCChHHHHHHHhchhh--HHHHHHHHHHHHHHHHHHH
Q 019543          152 TKFIAGHSDVMAGVLAVKGERL-------AKELYFLQN-AEGSGLAPFDCWICLRGVKT--MALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l-------~~~l~~~~~-~~~~~~~~~~a~~~~~~l~~--~~~r~~~~~~~a~~l~~~L  221 (339)
                      ||++|.+|. ..|++++++ ++       ++.+..... ....+.++.....+...|+.  ++...++..++.+++.+.|
T Consensus       235 sK~~g~~Gl-riG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L  312 (400)
T 3asa_A          235 SKPLGFAGI-RLGWTVIPQ-ELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKAL  312 (400)
T ss_dssp             CGGGTTTTC-CCEEEECCT-TCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCcch-heeEEeeCh-hhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999986653 457887775 45       455543222 22223455444433333332  3445566667788888888


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe-eCCHHHHHHHHccCC-cceeecccCC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-TGSLALSKHVVETTK-YFSITVSFGS  283 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~-~~~~~~~~~~~~~L~-~~~i~v~~G~  283 (339)
                      ++. +++. ..|                ..+.++++. +++.....++++.|. ..|+.++.|.
T Consensus       313 ~~~-g~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~  358 (400)
T 3asa_A          313 LAT-GFEV-FGG----------------EHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGI  358 (400)
T ss_dssp             HHT-TCEE-EEC----------------SSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGG
T ss_pred             HHC-CCee-eCC----------------CCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChh
Confidence            876 4532 212                135678888 653222234555553 4588877664

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.72  E-value=1.8e-16  Score=150.64  Aligned_cols=247  Identities=14%  Similarity=0.090  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhHhC-------CC-eEEEcCcHHHHHHHHH-HhcCCCC----EEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLDK-------AD-RALCFTSGMAALAAVT-HLLGTGE----EIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g-------~~-~~l~~~sG~~A~~~il-~ll~~GD----~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+|++.+|++++       .+ ++++++++++|+..++ .+++|||    +|++++|.|......++            
T Consensus        70 ~~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d  149 (391)
T 3bwn_A           70 EPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGD  149 (391)
T ss_dssp             CHHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCC
Confidence            4789999999887       33 5666666688988654 5789999    99999999998776554            


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc--cCCCeEEEeccccccccCCCceEE
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL--ELGADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~--~~~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                               .+|++.++.++++||+|++|..+.. .++  ..+.+|+++||||.++.+|.+ .|
T Consensus       150 ~~~l~~~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~l~~~~~~~i~~~S~SK~~g~~GlR-iG  227 (391)
T 3bwn_A          150 AWGFDKKGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHY-TPITRRQDHDIMLFTFSKITGHAGSR-IG  227 (391)
T ss_dssp             STTCCCCSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTT-SCCCCCBCCSEEEEEHHHHHSCGGGC-EE
T ss_pred             HHHcCCCCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCC-CccccCCCCeEEEEechhhcCCCccc-eE
Confidence                                     4454422233399999999975321 122  234579999999999877644 56


Q ss_pred             EEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh--------------hHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 019543          165 VLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK--------------TMALRVEKQQDNAQKIAEFLASHPRVKKV  230 (339)
Q Consensus       165 ~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~--------------~~~~r~~~~~~~a~~l~~~L~~~~~i~~v  230 (339)
                      ++++.++++++.+...+.......+.....++...|+              .+...++...++.+++.+.|+++++++..
T Consensus       228 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~  307 (391)
T 3bwn_A          228 WALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLP  307 (391)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECC
T ss_pred             EEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            7776445788888877654444556554443333333              24445666678888899999988765321


Q ss_pred             ecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCC
Q 019543          231 NYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT  310 (339)
Q Consensus       231 ~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~  310 (339)
                       .|. .+  ............|..+++.+.+.+   .+.+.|+..|+.++.|..+.                      ..
T Consensus       308 -~p~-~~--~~~f~~~~~~~~g~~~~~~~~~~~---~~~~~l~~~gV~v~pg~~fg----------------------~~  358 (391)
T 3bwn_A          308 -KYP-EA--FCNYFGKSLESYPAFAWLGTKEET---DLVSELRRHKVMSRAGERCG----------------------SD  358 (391)
T ss_dssp             -CCC-CE--EETTTTEEECCCCSEEEEEESSSC---CHHHHHHHTTEECEEGGGGT----------------------CC
T ss_pred             -cCC-cc--ccccccccCCCcceEEEecCCcHH---HHHHHHHHCCEEEccCCCCC----------------------CC
Confidence             121 00  000000000112346777775422   23334455688877664321                      12


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          311 EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ++.+|||++.  .++.++.+.++|++
T Consensus       359 ~~~iRis~~~--~~e~i~~~~~~L~~  382 (391)
T 3bwn_A          359 KKHVRVSMLS--REDVFNVFLERLAN  382 (391)
T ss_dssp             TTEEEEESCS--CHHHHHHHHHHHHS
T ss_pred             CCEEEEEecC--CHHHHHHHHHHHHH
Confidence            4789999995  34445555555543

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.71  E-value=1.2e-16  Score=155.08  Aligned_cols=236  Identities=11%  Similarity=0.083  Sum_probs=147.1

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCE---EEEcCCCccchHH----H---------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEE---IVAGDDLYGGTDR----L---------------  109 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~---Vi~~~~~y~~~~~----~---------------  109 (339)
                      +..+++++++++++|++  ++++++|+++++.+++ ++++|||.   |+++++.|++...    .               
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            45688999999999975  6777888899998654 47666554   9999998865221    0               


Q ss_pred             -----------------H----H--------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-ccCCCeEE
Q 019543          110 -----------------L----S--------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIV  147 (339)
Q Consensus       110 -----------------~----~--------------------~~I~~la~~~g~~livD~a~a~g~~~~~-~~~~~Di~  147 (339)
                                       +    .                    ++|.++|++||+++++|++|+.|...-. ...++|++
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~  270 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA  270 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence                             1    0                    9999999999999999999998865322 24678999


Q ss_pred             Eeccccccc-cCCCceEEEEEEcChhHHHHHHHH----------HHh---------------cCCCCChHHHHHHHhchh
Q 019543          148 MHSATKFIA-GHSDVMAGVLAVKGERLAKELYFL----------QNA---------------EGSGLAPFDCWICLRGVK  201 (339)
Q Consensus       148 ~~S~sK~l~-g~~~~~gG~v~~~~~~l~~~l~~~----------~~~---------------~~~~~~~~~a~~~~~~l~  201 (339)
                      ++|++|+++ |++ .. |++++++ ++.+.+...          ..+               .....+....+.+..+++
T Consensus       271 ~~s~~K~l~~gp~-~~-g~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~  347 (465)
T 3e9k_A          271 CWCSYKYLNAGAG-GI-AGAFIHE-KHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE  347 (465)
T ss_dssp             EECSSSTTCCCTT-CC-CEEEECG-GGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred             EECcccccccCCC-ce-EEEEEcH-HHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence            999999995 443 23 4566654 454333210          000               011333333333333333


Q ss_pred             h-----HHHHHHHHHHHHHHHHHHHhCC----------CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHH
Q 019543          202 T-----MALRVEKQQDNAQKIAEFLASH----------PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK  266 (339)
Q Consensus       202 ~-----~~~r~~~~~~~a~~l~~~L~~~----------~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~  266 (339)
                      .     ++...++..++++++.+.|+++          ++++. ..|.   .+         ...+++++|.+..  ...
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~-~~p~---~~---------~~~g~~~~~~~~~--~~~  412 (465)
T 3e9k_A          348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNI-ITPS---HV---------EERGCQLTITFSV--PNK  412 (465)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEE-CSCS---SG---------GGBCSCEEEEECC--TTC
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEE-eCCC---CH---------hhcccEEEEEecC--CHH
Confidence            2     3555666677788888888764          55532 2221   01         1247889998752  233


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe-ccCCHHHHHHHHHHHHh
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GIEDVNDLISDLDKALR  335 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~e~~~~li~~l~~al~  335 (339)
                      ++.+.|...|+.++++                           .++.||||+ ++.++++.++.+.++|+
T Consensus       413 ~l~~~L~~~Gi~v~~~---------------------------~~~~iRis~~~~~~t~edi~~~~~~l~  455 (465)
T 3e9k_A          413 DVFQELEKRGVVCDKR---------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLT  455 (465)
T ss_dssp             CHHHHHHTTTEECEEE---------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEecC---------------------------CCCEEEEeCcccCCCHHHHHHHHHHHH
Confidence            4566666667766511                           237899998 55555554555544443

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.71  E-value=4.9e-16  Score=144.10  Aligned_cols=224  Identities=8%  Similarity=0.070  Sum_probs=153.9

Q ss_pred             chHHHHHHHHHhHhC---C--CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDK---A--DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g---~--~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +...++++.++++++   .  ++++++++|++|+..++..+  ||+|+++ +.|++....++                  
T Consensus        56 ~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d  132 (335)
T 1uu1_A           56 SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIP  132 (335)
T ss_dssp             SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred             CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCC
Confidence            347899999999998   3  46777788899998766655  9999999 99987654432                  


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---c-cCCCeEEEeccccccccCCCce
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---L-ELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~-~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                               ++|.++++.+| ++|+|++|+.......   . ..+.+++++|+||+++.+| ..
T Consensus       133 ~~~l~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r  210 (335)
T 1uu1_A          133 EVNVGEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAA-QR  210 (335)
T ss_dssp             CCCCCTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGG-GC
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcc-cC
Confidence                                     78888888889 9999999973211111   1 2345799999999998555 44


Q ss_pred             EEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCC
Q 019543          163 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  239 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~  239 (339)
                      .|+++++ +++.+.++....  ....++...+.+...|+.   ++.+.++..++.+++.+.|+++ ++. + +|.     
T Consensus       211 ~G~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~-----  279 (335)
T 1uu1_A          211 VGYVVAS-EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM-GYR-I-TDS-----  279 (335)
T ss_dssp             CEEEEEC-HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-B-CCC-----
T ss_pred             eEEEEeC-HHHHHHHHHhcC--CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CcE-E-cCC-----
Confidence            6788875 467777765432  235566655554444443   4556667778888888888876 442 1 231     


Q ss_pred             chHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec
Q 019543          240 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg  319 (339)
                                 .+..+++.+.+ ....++.+.|...|+.++.                            .++.+|||++
T Consensus       280 -----------~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~----------------------------~~~~iRis~~  319 (335)
T 1uu1_A          280 -----------RGNFVFVFMEK-EEKERLLEHLRTKNVAVRS----------------------------FREGVRITIG  319 (335)
T ss_dssp             -----------CSSEEEEECCT-HHHHHHHHHHHHHTEEEEE----------------------------ETTEEEEECC
T ss_pred             -----------CCeEEEEECCC-CCHHHHHHHHHHCCEEEEE----------------------------CCCeEEEEeC
Confidence                       35678888865 3456777777777776542                            1257999997


Q ss_pred             cCCHHHHHHHHHHHHhcC
Q 019543          320 IEDVNDLISDLDKALRTG  337 (339)
Q Consensus       320 ~e~~~~li~~l~~al~~~  337 (339)
                      .+   +.++.+.++|+++
T Consensus       320 ~~---~~i~~~~~~l~~~  334 (335)
T 1uu1_A          320 KR---EENDMILRELEVF  334 (335)
T ss_dssp             CH---HHHHHHHHHHHCC
T ss_pred             CH---HHHHHHHHHHHhh
Confidence            52   3477787777653

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.70  E-value=2.2e-16  Score=147.75  Aligned_cols=235  Identities=13%  Similarity=0.056  Sum_probs=147.8

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEc-CcHHHHHHHH-HHhcCCCCEEEEcCCCccchH--HHHH----------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCF-TSGMAALAAV-THLLGTGEEIVAGDDLYGGTD--RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~-~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~--~~~~----------------  111 (339)
                      +.++++++++++++|.+   +++++ +||++|+.++ .++++|||+|++.++.+.+..  ...+                
T Consensus        49 ~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  128 (362)
T 2c0r_A           49 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNY  128 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhCCeEEEeccccccc
Confidence            35789999999999976   45555 6779999864 458899999987654322211  1000                


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCC
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~  160 (339)
                                                     ..|.++   ||+++++|++|+.+...-.+. ..|++++|+||+++..| 
T Consensus       129 ~~~~~~~~~~i~~~t~~v~~~~~~n~tG~~~~~l~~i---~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~K~~g~~G-  203 (362)
T 2c0r_A          129 MTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDT---GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQKNLGPSG-  203 (362)
T ss_dssp             CSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCC---TTSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTCCSS-
T ss_pred             ccCCCHHHcccCCCcCEEEEeCCcCccceeccccccc---CCCEEEEEChhhccCCccchh-HCcEEEEeccccccCcC-
Confidence                                           222233   899999999998875422222 23999999999997443 


Q ss_pred             ceEEEEEEcChhHHHHHHHH------------HHhcCCCCChHHHHHHHhchh------hHHHHHHHHHHHHHHHHHHHh
Q 019543          161 VMAGVLAVKGERLAKELYFL------------QNAEGSGLAPFDCWICLRGVK------TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~------------~~~~~~~~~~~~a~~~~~~l~------~~~~r~~~~~~~a~~l~~~L~  222 (339)
                        .|++++++ ++++.++..            ......+.+....+.+..+++      .++.+.++.+++++++.+.|+
T Consensus       204 --~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~  280 (362)
T 2c0r_A          204 --VTVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAID  280 (362)
T ss_dssp             --CEEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEEcH-HHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence              47888875 454443220            001223445443333333333      246667778888999999999


Q ss_pred             CCCCc-eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          223 SHPRV-KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       223 ~~~~i-~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      +++++ ... .+     +.        ...+++++|.+++.....+|++.|...|+.+..|.       +          
T Consensus       281 ~~~~~~~~~-~~-----~~--------~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~-------~----------  329 (362)
T 2c0r_A          281 QSGGFYRGC-VD-----VD--------SRSDMNITFRLASEELEKEFVKASEQEGFVGLKGH-------R----------  329 (362)
T ss_dssp             TSTTSSEES-SC-----GG--------GBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCC-------T----------
T ss_pred             HcCCccccC-CC-----hH--------HcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCC-------C----------
Confidence            87633 321 11     10        01346788888655556788888877788665331       1          


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                              ..+.||||++..++++.++.+.++|++
T Consensus       330 --------~~~~iRis~~~~~~~e~i~~l~~~l~~  356 (362)
T 2c0r_A          330 --------SVGGLRASIYNAVPYESCEALVQFMEH  356 (362)
T ss_dssp             --------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             --------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                    124599999976666667777777654

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.70  E-value=2.2e-16  Score=152.02  Aligned_cols=211  Identities=13%  Similarity=0.047  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHhHh--------CCCeEEEcCcHHHHHHHHH-HhcCCCC--------------EEEEc-CCCccchH---
Q 019543           55 PTRDALESLLAKLD--------KADRALCFTSGMAALAAVT-HLLGTGE--------------EIVAG-DDLYGGTD---  107 (339)
Q Consensus        55 ~~~~~le~~la~~~--------g~~~~l~~~sG~~A~~~il-~ll~~GD--------------~Vi~~-~~~y~~~~---  107 (339)
                      ....+|++.+|+++        ..++++++++|++|+.+++ .++++||              +|+++ ++.|.+..   
T Consensus        83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~  162 (444)
T 3if2_A           83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH  162 (444)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence            34677888888876        3467889999999998654 5788998              78775 44443211   


Q ss_pred             -------------------------------H----H---HH------------------------HHHHHHHHHcCCEE
Q 019543          108 -------------------------------R----L---LS------------------------RKIAEMAHAHGALL  125 (339)
Q Consensus       108 -------------------------------~----~---~~------------------------~~I~~la~~~g~~l  125 (339)
                                                     .    .   +.                        ++|+++|++||+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~l  242 (444)
T 3if2_A          163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPL  242 (444)
T ss_dssp             SSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred             cccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEE
Confidence                                           0    1   11                        88999999999999


Q ss_pred             EEeCCcCCCCCc---Cc---ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc
Q 019543          126 LVDNSIMSPVLS---RP---LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       126 ivD~a~a~g~~~---~~---~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~  199 (339)
                      |+|++|+.+...   ..   ...+.+++++|+||. +++| ...|+++++ +++.+.+.......+...++...+++...
T Consensus       243 i~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  319 (444)
T 3if2_A          243 IIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVAD-AKVIEAVSAMNAVVNLAPTRFGAAIATPL  319 (444)
T ss_dssp             EEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECC-HHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred             EEECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEEC-HHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            999999753221   11   123568999999997 5444 456788776 47888887766555545555544433332


Q ss_pred             hhh------HHH-HHHHHHHHHHHHHHHHhC-CCCce-EEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHH
Q 019543          200 VKT------MAL-RVEKQQDNAQKIAEFLAS-HPRVK-KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVV  269 (339)
Q Consensus       200 l~~------~~~-r~~~~~~~a~~l~~~L~~-~~~i~-~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~  269 (339)
                      ++.      ... ..+...++.+.+.+.|++ ++.+. .+..|                ..+.++++.+.. .....+++
T Consensus       320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~l~  383 (444)
T 3if2_A          320 VANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKP----------------EGAIFLWLWFKDLPISTLDLY  383 (444)
T ss_dssp             HHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECC----------------CBSSEEEEEETTCSSCHHHHH
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecC----------------CccEEEEEEcCCCCCCHHHHH
Confidence            222      111 233445556666666654 34332 12222                135677777753 23355677


Q ss_pred             ccCCcceeecccCCc
Q 019543          270 ETTKYFSITVSFGSV  284 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~  284 (339)
                      +.|...|+.++.|..
T Consensus       384 ~~l~~~gi~v~~g~~  398 (444)
T 3if2_A          384 ERLKAKGTLIVPSEY  398 (444)
T ss_dssp             HHHHHTTEECEEGGG
T ss_pred             HHHHHCCeEEecchh
Confidence            778778998887653

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.70  E-value=4.4e-17  Score=154.62  Aligned_cols=235  Identities=16%  Similarity=0.161  Sum_probs=147.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-hcC------C-CCEEEEcCCCccchHH----------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-LLG------T-GEEIVAGDDLYGGTDR----------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-ll~------~-GD~Vi~~~~~y~~~~~----------------  108 (339)
                      ..+..+++++++++++|.+++++++||++|+.+++. +..      + +|+|++.++.|++...                
T Consensus        80 ~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~  159 (397)
T 2ord_A           80 WNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFE  159 (397)
T ss_dssp             EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGC
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccC
Confidence            357889999999999999999999999999986554 332      5 4788888887754211                


Q ss_pred             ---------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc---
Q 019543          109 ---------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRPL---  140 (339)
Q Consensus       109 ---------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~~---  140 (339)
                                     .++                             ++|.++|++||+++|+|++|+ .+..+.+.   
T Consensus       160 p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~  239 (397)
T 2ord_A          160 PLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQ  239 (397)
T ss_dssp             SCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHH
T ss_pred             CCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhh
Confidence                           000                             889999999999999999996 22112221   


Q ss_pred             --cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH--HHHHHHHHHHHHH
Q 019543          141 --ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQK  216 (339)
Q Consensus       141 --~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~  216 (339)
                        ....|++  |+||++++ | ...|++++++ ++. .++......+...++..++.+...|+.+  +...++.+++.++
T Consensus       240 ~~~~~~d~~--s~sK~~~~-G-~r~G~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  313 (397)
T 2ord_A          240 KYGVVPDVL--TTAKGLGG-G-VPIGAVIVNE-RAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNY  313 (397)
T ss_dssp             HHTCCCSEE--EECGGGGT-T-SCCEEEEECS-TTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred             hhCCCCCee--eeccccCC-C-cCeEEEEEch-Hhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence              1235765  77999994 3 3456777776 454 4432111223456777666666555544  2345666677778


Q ss_pred             HHHHHhCCC-CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecccccc
Q 019543          217 IAEFLASHP-RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMS  295 (339)
Q Consensus       217 l~~~L~~~~-~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~  295 (339)
                      +.+.|++.+ ++..+..               ..+.+.+++|.+.+.....++.+.|...|+.++.|             
T Consensus       314 l~~~L~~~~~~~~~~~~---------------~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~-------------  365 (397)
T 2ord_A          314 LMKKLQEMKEEYDVVAD---------------VRGMGLMIGIQFREEVSNREVATKCFENKLLVVPA-------------  365 (397)
T ss_dssp             HHHHHHHHHHHCTTEEE---------------EEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEE-------------
T ss_pred             HHHHHHHHHHhCCceEE---------------EEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccC-------------
Confidence            877776531 1100000               01246788888864323556777776667765532             


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEeccCCHH----HHHHHHHHHHh
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGIEDVN----DLISDLDKALR  335 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~e~~~----~li~~l~~al~  335 (339)
                                    .++.+|||++...++    ++++.|.++++
T Consensus       366 --------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          366 --------------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             --------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence                          136799997654444    44445555444

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.69  E-value=3.7e-16  Score=150.36  Aligned_cols=239  Identities=15%  Similarity=0.121  Sum_probs=151.3

Q ss_pred             CcccCCCCchHHHHHHHHHhHh--CC-CeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccch--------------
Q 019543           47 YDYTRSGNPTRDALESLLAKLD--KA-DRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGT--------------  106 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~--g~-~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~--------------  106 (339)
                      |.+.++.++..++|++++++++  +. +++++++||++|+..++.+   ..+++.|++.++.|++.              
T Consensus        78 ~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~  157 (439)
T 3dxv_A           78 ATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQA  157 (439)
T ss_dssp             SCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchh
Confidence            3445556688999999999998  55 6899999999999854432   34667777766655321              


Q ss_pred             -----------------------------H----HHH----H-------------------------HHHHHHHHHcCCE
Q 019543          107 -----------------------------D----RLL----S-------------------------RKIAEMAHAHGAL  124 (339)
Q Consensus       107 -----------------------------~----~~~----~-------------------------~~I~~la~~~g~~  124 (339)
                                                   .    ..+    .                         ++|.++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  237 (439)
T 3dxv_A          158 DAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGIL  237 (439)
T ss_dssp             ------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred             hccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence                                         1    122    1                         8999999999999


Q ss_pred             EEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          125 LLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       125 livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      ||+||+|+ .+..+..     .....|++  |+||++++ |. ..|++++++ ++++.+.......+. .+++..+.++.
T Consensus       238 li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~-riG~~~~~~-~~~~~~~~~~~~~t~-~~~~~~~aa~a  311 (439)
T 3dxv_A          238 VVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GL-PLSAVIAPA-EILDCASAFAMQTLH-GNPISAAAGLA  311 (439)
T ss_dssp             EEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TS-CCEEEEEEH-HHHTSCSSSSCCTTT-TCHHHHHHHHH
T ss_pred             EEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Cc-ceEEEEECH-HHHhhhcCCCcCCCc-ccHHHHHHHHH
Confidence            99999996 2222211     12234665  88999995 44 567888764 566655433212334 67777666666


Q ss_pred             chhhH--HHHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee--------CCHHH
Q 019543          199 GVKTM--ALRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--------GSLAL  264 (339)
Q Consensus       199 ~l~~~--~~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~--------~~~~~  264 (339)
                      .++.+  +...++.+++.+++.+.|++    ++.+..+                  .+.|.++++.+        ++...
T Consensus       312 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~  373 (439)
T 3dxv_A          312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI------------------RGRGLACGMELVCDRQSREPARAE  373 (439)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCCHHH
Confidence            66543  23355556666666666654    3433221                  12567888876        34555


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      +.++.+.|...|+.+..|+                         ...+.+||++++..+++.++.+.++|
T Consensus       374 ~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l  418 (439)
T 3dxv_A          374 TAKLIYRAYQLGLVVYYVG-------------------------MNGNVLEFTPPLTITETDIHKALDLL  418 (439)
T ss_dssp             HHHHHHHHHHHTEECEEES-------------------------TTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEeecC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            6778888877777665432                         12368999987765554444444443

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.69  E-value=2.7e-15  Score=139.47  Aligned_cols=232  Identities=14%  Similarity=0.106  Sum_probs=152.5

Q ss_pred             CCchHHHHHHHHHhHhCCCe-EEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccc------hH-----------------
Q 019543           53 GNPTRDALESLLAKLDKADR-ALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGG------TD-----------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~-~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~------~~-----------------  107 (339)
                      ..+..+++++++++++|.+. +++++||++|+.+++ .+++|||+|+++++.|..      ..                 
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  120 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAK  120 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGC
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCCCCe
Confidence            46788999999999999665 578899999997644 477899999998874321      10                 


Q ss_pred             -------H-HH---------H---------------------HHHHHHHHHcCCEEEEeCCcCCC------CCcCcc--c
Q 019543          108 -------R-LL---------S---------------------RKIAEMAHAHGALLLVDNSIMSP------VLSRPL--E  141 (339)
Q Consensus       108 -------~-~~---------~---------------------~~I~~la~~~g~~livD~a~a~g------~~~~~~--~  141 (339)
                             . .+         +                     ++|.++|++||+++++|++|+.+      ......  .
T Consensus       121 ~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~  200 (356)
T 1v72_A          121 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWK  200 (356)
T ss_dssp             CCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGG
T ss_pred             EcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhh
Confidence                   1 11         2                     88999999999999999998632      111111  1


Q ss_pred             CCCeEEEeccccccccCCCceE-EEEEEcChhHHHHHHHHHHhcCCCCC-h-HHHHHHHhchhh--HHHHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMA-GVLAVKGERLAKELYFLQNAEGSGLA-P-FDCWICLRGVKT--MALRVEKQQDNAQK  216 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~g-G~v~~~~~~l~~~l~~~~~~~~~~~~-~-~~a~~~~~~l~~--~~~r~~~~~~~a~~  216 (339)
                      .+.|+++.|+||+ ++   ..| |+++++ +++.+.++..+...+...+ . ..+......++.  +....++..++.++
T Consensus       201 ~~~d~~~~s~sK~-g~---~~G~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  275 (356)
T 1v72_A          201 AGVDALSFGATKN-GV---LAAEAIVLFN-TSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQR  275 (356)
T ss_dssp             GTCCEEEECCGGG-TC---SSCEEEEESS-GGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEecccC-CC---cCccEEEEEC-HHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3678999999999 43   345 688775 4777777665443343222 2 222112222322  33456667788899


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.+.|+++++++.+ .|.                .+.++++.+.+     ++.+.|...|+.++.|.+            
T Consensus       276 l~~~L~~~~g~~~~-~~~----------------~~~~~~~~~~~-----~~~~~l~~~gi~v~~g~~------------  321 (356)
T 1v72_A          276 LAQGLEGLGGVEVL-GGT----------------EANILFCRLDS-----AMIDALLKAGFGFYHDRW------------  321 (356)
T ss_dssp             HHHHHTTCTTEEEE-SCC----------------CSSEEEEEECH-----HHHHHHHHTTCBCBCSSS------------
T ss_pred             HHHHHhhCCCcEEc-cCC----------------CccEEEEEcCH-----HHHHHHHhcCeEEecccc------------
Confidence            99999888777533 331                35677777742     566666666776664420            


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                   .++.+|++++...+++.++.+.++|++
T Consensus       322 -------------~~~~iRi~~~~~~~~~~i~~~~~~l~~  348 (356)
T 1v72_A          322 -------------GPNVVRFVTSFATTAEDVDHLLNQVRL  348 (356)
T ss_dssp             -------------STTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             -------------CCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence                         136799999877666666666666654

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.69  E-value=6e-16  Score=147.31  Aligned_cols=235  Identities=16%  Similarity=0.122  Sum_probs=144.7

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHHhc------CCCCE-EEEcCCCccchHH----H----------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLL------GTGEE-IVAGDDLYGGTDR----L----------  109 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~ll------~~GD~-Vi~~~~~y~~~~~----~----------  109 (339)
                      .+..+++++++++++|.+  ++++++||++|+.+ +..++      +|||+ |++++..|+.+..    +          
T Consensus        70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~  149 (416)
T 1qz9_A           70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL  149 (416)
T ss_dssp             GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred             HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence            367789999999999975  67777788888864 43444      89997 5555555553211    0          


Q ss_pred             --------HH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-cCCCeEEEecccccc
Q 019543          110 --------LS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-ELGADIVMHSATKFI  155 (339)
Q Consensus       110 --------~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-~~~~Di~~~S~sK~l  155 (339)
                              ++                         ++|.++|++||+++|+|++|+.|.....+ ..++|++++|++|++
T Consensus       150 ~~v~~~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l  229 (416)
T 1qz9_A          150 RLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYL  229 (416)
T ss_dssp             EEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTT
T ss_pred             EEeCcHHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccC
Confidence                    11                         99999999999999999999876542222 346899999999998


Q ss_pred             ccCCCceE-EEEEEcChhHHHHHHHHH-----------------------HhcCCCCChHHHHHHHhchh-----hHHHH
Q 019543          156 AGHSDVMA-GVLAVKGERLAKELYFLQ-----------------------NAEGSGLAPFDCWICLRGVK-----TMALR  206 (339)
Q Consensus       156 ~g~~~~~g-G~v~~~~~~l~~~l~~~~-----------------------~~~~~~~~~~~a~~~~~~l~-----~~~~r  206 (339)
                      +++  ..+ |++++++ ++.+.++...                       .......++...+.+...++     .++..
T Consensus       230 ~~g--~~~~g~l~~~~-~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~  306 (416)
T 1qz9_A          230 NGG--PGSQAFVWVSP-QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASL  306 (416)
T ss_dssp             CCC--TTCCCEEEECT-TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             CCC--CCCeEEEEECH-HHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence            532  224 7888875 4544443210                       11112334433322222222     24556


Q ss_pred             HHHHHHHHHHHHHHHhCC-C--CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          207 VEKQQDNAQKIAEFLASH-P--RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~-~--~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      .++..++++++.+.|+++ +  ++.. ..|.   .+         ...+++++|.+.+   ..++.+.|...|+.+..  
T Consensus       307 ~~~~~~~~~~l~~~L~~~~~~~g~~~-~~~~---~~---------~~~~~~~~~~~~~---~~~l~~~l~~~gi~~~~--  368 (416)
T 1qz9_A          307 RRKSLALTDLFIELVEQRCAAHELTL-VTPR---EH---------AKRGSHVSFEHPE---GYAVIQALIDRGVIGDY--  368 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCEE-CSCS---SG---------GGBCSEEEEECTT---HHHHHHHHHTTTEECEE--
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCeEE-eCCC---CH---------HHcCCEEEEecCC---HHHHHHHHHhCCcEecc--
Confidence            777778888888888875 5  5532 2121   00         0135688888865   34566667666765421  


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEec-cCCHHHHHHHHHHHH
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-IEDVNDLISDLDKAL  334 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg-~e~~~~li~~l~~al  334 (339)
                             .                  .++.+|||++ +..+++.++.+.++|
T Consensus       369 -------~------------------~~~~lRis~~~~~~t~~~i~~~~~~l  395 (416)
T 1qz9_A          369 -------R------------------EPRIMRFGFTPLYTTFTEVWDAVQIL  395 (416)
T ss_dssp             -------E------------------TTTEEEEECCTTTCCHHHHHHHHHHH
T ss_pred             -------C------------------CCCeEEEeCcccCCCHHHHHHHHHHH
Confidence                   0                  2468999997 344444444444444

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.69  E-value=1.1e-15  Score=146.31  Aligned_cols=240  Identities=13%  Similarity=0.057  Sum_probs=148.1

Q ss_pred             HHHHHHHHHhHhCCC--eEEEcCcHHHHH--HHHHH-hcCC------------CCEEEEcCCCccchHHHHH--------
Q 019543           57 RDALESLLAKLDKAD--RALCFTSGMAAL--AAVTH-LLGT------------GEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~~--~~l~~~sG~~A~--~~il~-ll~~------------GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      ..+|++.++++++.+  ++++++++++|+  .+++. +..+            ||+|+++++.|.+....++        
T Consensus        78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~  157 (422)
T 3d6k_A           78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMIN  157 (422)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEE
T ss_pred             CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEe
Confidence            678999999999864  566666667786  44444 4455            3579999999987654332        


Q ss_pred             --------------------------------------------HHHHHHHH-HcCCEEEEeCCcCC-CCC--cC---cc
Q 019543          112 --------------------------------------------RKIAEMAH-AHGALLLVDNSIMS-PVL--SR---PL  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~-~~g~~livD~a~a~-g~~--~~---~~  140 (339)
                                                                  ++|+++|+ +||+++|+|++|+. +..  ..   .+
T Consensus       158 v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~  237 (422)
T 3d6k_A          158 VPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNV  237 (422)
T ss_dssp             EEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCH
T ss_pred             cCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcCh
Confidence                                                        58888898 99999999999974 221  11   11


Q ss_pred             --------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-------HHH
Q 019543          141 --------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-------MAL  205 (339)
Q Consensus       141 --------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-------~~~  205 (339)
                              ..+.++++.||||+ +++| ...|+++++ +++++.+......++...+++..+.+...|+.       +..
T Consensus       238 ~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~  314 (422)
T 3d6k_A          238 IEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASS-KENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLK  314 (422)
T ss_dssp             HHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECC-HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred             hhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHH
Confidence                    12457999999998 5555 456788876 47888888776666666676655544444432       222


Q ss_pred             HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeeccc
Q 019543          206 RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSF  281 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~  281 (339)
                      ..+...++.+++.+.|++    .+++. +..|                ..+..+++.+.+. ....+.+.|+..|+.++.
T Consensus       315 ~~~~~~~~~~~l~~~L~~~l~~~~~~~-~~~p----------------~~g~~~~~~~~~~-~~~~~~~~l~~~gV~v~~  376 (422)
T 3d6k_A          315 HAASLAPKFERVLEILDSRLSEYGVAK-WTSP----------------TGGYFISVDVVPG-TASRVVELAKEAGIALTG  376 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTCEE-ECCC----------------SBSSCEEEEESTT-CHHHHHHHHHHTTEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCceE-EeCC----------------CcceEEEEECCCC-CHHHHHHHHHHCCeEEEc
Confidence            333444555566666543    33332 2223                1355678887532 234566667778998887


Q ss_pred             CC-cccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Q 019543          282 GS-VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI---EDVNDLISDLDKALR  335 (339)
Q Consensus       282 G~-~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~---e~~~~li~~l~~al~  335 (339)
                      |+ .+..  .+    +            -.++.+|||++.   ++.++.++.|.++++
T Consensus       377 ~g~~f~~--~~----~------------~~~~~iRis~~~~~~e~i~~~~~~l~~~l~  416 (422)
T 3d6k_A          377 AGSSFPL--HN----D------------PNNENIRLAPSLPPVAELEVAMDGFATCVL  416 (422)
T ss_dssp             TTTTSGG--GC----C------------TTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred             CccccCC--CC----C------------CCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            43 2210  00    0            024789999985   233444555555544

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.69  E-value=1.5e-15  Score=147.06  Aligned_cols=251  Identities=16%  Similarity=0.158  Sum_probs=150.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcC----CCCE---EEEcCCCccchH-----------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLG----TGEE---IVAGDDLYGGTD-----------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~----~GD~---Vi~~~~~y~~~~-----------------  107 (339)
                      .++...+|+++++++++.+++++++||++|+.++ ..+++    |||+   |+++.+.|+.+.                 
T Consensus        74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~  153 (467)
T 1ax4_A           74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK  153 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGG
T ss_pred             cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccc
Confidence            4567889999999999999999999999999854 44667    9998   888744322110                 


Q ss_pred             ----------------H----HH------H-----------------------HHHHHHHHHcCCEEEEeCCcCC-----
Q 019543          108 ----------------R----LL------S-----------------------RKIAEMAHAHGALLLVDNSIMS-----  133 (339)
Q Consensus       108 ----------------~----~~------~-----------------------~~I~~la~~~g~~livD~a~a~-----  133 (339)
                                      .    .+      +                       ++|+++|++||++||+|+++..     
T Consensus       154 ~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~  233 (467)
T 1ax4_A          154 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF  233 (467)
T ss_dssp             GGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred             cccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchh
Confidence                            0    11      1                       7899999999999999998754     


Q ss_pred             ------CCCcCcc-c------CCCeEEEeccccccccCCCceEEEEEEcCh-hHHHHHHHHHHhcC-----CCCChHHHH
Q 019543          134 ------PVLSRPL-E------LGADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYFLQNAEG-----SGLAPFDCW  194 (339)
Q Consensus       134 ------g~~~~~~-~------~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~l~~~l~~~~~~~~-----~~~~~~~a~  194 (339)
                            +..+... .      ..+|++++|+||+++.+   .||+++++++ ++.+.+......++     ...+.....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (467)
T 1ax4_A          234 IKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMA  310 (467)
T ss_dssp             HHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHH
T ss_pred             ccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccchHHH
Confidence                  2222111 1      24789999999999753   4688888755 67777766544221     122222111


Q ss_pred             HHHhchhhH--HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe-------eCC-HHH
Q 019543          195 ICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-------TGS-LAL  264 (339)
Q Consensus       195 ~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~-------~~~-~~~  264 (339)
                      .+..+++..  ++++++..++.+++.+.|++ +++..+ .|.                .+..+++.       +.+ ...
T Consensus       311 a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~  372 (467)
T 1ax4_A          311 AMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE-AGIPIQ-YPT----------------GGHAVFVDCKKLVPQIPGDQFP  372 (467)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TTCCBC-SSC----------------CSSEEEEESTTTCTTSCGGGCH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-CCCCcc-cCC----------------CceEEEEehhhhccccccCCCC
Confidence            111123322  23455555777888888876 444321 221                34566666       321 123


Q ss_pred             HHHHHccC-Ccceeeccc-CCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC-CHHHHHHHHHHHHh
Q 019543          265 SKHVVETT-KYFSITVSF-GSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKALR  335 (339)
Q Consensus       265 ~~~~~~~L-~~~~i~v~~-G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e-~~~~li~~l~~al~  335 (339)
                      ..+|++.| +..|+.++. |... ....|...  ...+        ...+.||||+... .+++.++.+.++|+
T Consensus       373 ~~~l~~~L~~~~gv~v~~~g~~~-~~~~~~~g--~~~~--------~~~~~iRls~~~~~~t~e~i~~~~~~l~  435 (467)
T 1ax4_A          373 AQAVINALYLESGVRAVEIGSFL-LGRDPATG--EQKH--------ADMEFMRLTIARRVYTNDHMDYIADALI  435 (467)
T ss_dssp             HHHHHHHHHHHHCEECEEESHHH-HCBCTTTC--SBCC--------CSCCEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCceeeecCccc-cccccccc--cccc--------cccceEEEecccccCCHHHHHHHHHHHH
Confidence            56788888 778888876 4221 00001000  0000        0247899999832 44555555555554

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.68  E-value=3e-16  Score=154.00  Aligned_cols=245  Identities=15%  Similarity=0.132  Sum_probs=152.0

Q ss_pred             CCchHHHHHH----HHHhHhCCC-------eEEEcCcHHHHHHH-HHHhcCC--------CC-----EEEEcCCCccchH
Q 019543           53 GNPTRDALES----LLAKLDKAD-------RALCFTSGMAALAA-VTHLLGT--------GE-----EIVAGDDLYGGTD  107 (339)
Q Consensus        53 ~~~~~~~le~----~la~~~g~~-------~~l~~~sG~~A~~~-il~ll~~--------GD-----~Vi~~~~~y~~~~  107 (339)
                      ..|...++|+    .+++++|.+       ..+++++|++|+.. ++++..+        ||     +|+++++.|..+.
T Consensus        89 ~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~  168 (502)
T 3hbx_A           89 EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE  168 (502)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH
T ss_pred             cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH
Confidence            4555555554    578888876       45568899999874 4444443        77     9999988765443


Q ss_pred             HHHH-------------------------------------------------HHHHHHHHHc------CCEEEEeCCcC
Q 019543          108 RLLS-------------------------------------------------RKIAEMAHAH------GALLLVDNSIM  132 (339)
Q Consensus       108 ~~~~-------------------------------------------------~~I~~la~~~------g~~livD~a~a  132 (339)
                      ....                                                 ++|.++|+++      |+++++|+||+
T Consensus       169 ~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~  248 (502)
T 3hbx_A          169 KFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASG  248 (502)
T ss_dssp             HHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTG
T ss_pred             HHHHHcCceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCcc
Confidence            3222                                                 9999999999      99999999998


Q ss_pred             CCCC---cCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HHhcC---------CCCC---hH
Q 019543          133 SPVL---SRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEG---------SGLA---PF  191 (339)
Q Consensus       133 ~g~~---~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~~~---------~~~~---~~  191 (339)
                      .++.   ....     ..++|++++|++|++.++.+  .|+++++++......... ..+.+         ...+   .+
T Consensus       249 ~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g--~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~  326 (502)
T 3hbx_A          249 GFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG--IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVI  326 (502)
T ss_dssp             GGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHH
T ss_pred             chhhhhhCcccccccCCCCceEEEECcccccCCCCC--eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHH
Confidence            5431   1111     13789999999999976643  356666654433111100 01111         1111   12


Q ss_pred             HHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHH
Q 019543          192 DCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKH  267 (339)
Q Consensus       192 ~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~  267 (339)
                      ..+.++.  +.+.+..+.++..++++++.+.|+++++++.+.. .               ...++++|.+.+.  ....+
T Consensus       327 a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~-~---------------~~~~~v~f~~~~~~~~~~~~  390 (502)
T 3hbx_A          327 AQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK-D---------------EGVPLVAFSLKDSSCHTEFE  390 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC-S---------------SSSSEEEEEESSCSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC-C---------------CCceEEEEEecCCCcCCHHH
Confidence            2333333  3455678888999999999999999987764432 0               1357899987432  23446


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC----HHHHHHHHHHHHh
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED----VNDLISDLDKALR  335 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~----~~~li~~l~~al~  335 (339)
                      +.+.|...|+.++.      ...|...              -....+||+++...    .+.++++|.++++
T Consensus       391 l~~~L~~~Gi~v~~------~~~p~~~--------------~~~~~lRisv~~~~t~edid~li~~L~~~l~  442 (502)
T 3hbx_A          391 ISDMLRRYGWIVPA------YTMPPNA--------------QHITVLRVVIREDFSRTLAERLVIDIEKVMR  442 (502)
T ss_dssp             HHHHHHTTTCBCCE------EECCTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcEEee------ccCCccc--------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            77788777776642      1223210              02367999999544    4555555555554

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.51  E-value=2.4e-18  Score=163.15  Aligned_cols=225  Identities=14%  Similarity=0.168  Sum_probs=140.3

Q ss_pred             HHHHHHHHHhHh----C----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHH------------------
Q 019543           57 RDALESLLAKLD----K----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRL------------------  109 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~------------------  109 (339)
                      ..++++.+++++    |    .++++++++|++|+.+++ .++++||+|+++.+.|++....                  
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g  147 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENG  147 (392)
Confidence            556666666653    4    345677777789998644 4788999999998876543210                  


Q ss_pred             ---HH----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc----c--C
Q 019543          110 ---LS----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL----E--L  142 (339)
Q Consensus       110 ---~~----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~----~--~  142 (339)
                         +.                                  ++|+++|++||+++|+|++|+......    .+    .  .
T Consensus       148 ~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  227 (392)
T 3b1d_A          148 LFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFK  227 (392)
Confidence               00                                  789999999999999999997643311    11    1  2


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-CCChHHHHHHHhchhh----HHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLAPFDCWICLRGVKT----MALRVEKQQDNAQKI  217 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-~~~~~~a~~~~~~l~~----~~~r~~~~~~~a~~l  217 (339)
                      +.++++.|+||+++.+| ...|+++++++++++.++.....++. ..++...+.+...|+.    ++...++..++.+++
T Consensus       228 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  306 (392)
T 3b1d_A          228 DFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFA  306 (392)
Confidence            34588999999998555 45678877654577777765544432 3344444434333332    344455556777777


Q ss_pred             HHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCH-HHHHHHHccCC-cceeecccCCcccceecccc
Q 019543          218 AEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSL-ALSKHVVETTK-YFSITVSFGSVKSLISMPCF  293 (339)
Q Consensus       218 ~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~-~~~~~~~~~L~-~~~i~v~~G~~~s~~~~p~~  293 (339)
                      .+.|++ +|++..+  +                +.++ ++++.+... ....++.+.|. ..|+.+..|..+.    +  
T Consensus       307 ~~~l~~~~~~~~~~--~----------------~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~----~--  362 (392)
T 3b1d_A          307 VEYFAQEAPRLKVM--K----------------PQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYG----S--  362 (392)
Confidence            777776 5554321  1                1233 335666432 24567888884 6788877654321    0  


Q ss_pred             ccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          294 MSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       294 ~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                                     ..++.+||+++..
T Consensus       363 ---------------~~~~~iRi~~~~~  375 (392)
T 3b1d_A          363 ---------------EGELHARLNIAAP  375 (392)
Confidence                           0246799999863

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.68  E-value=6.4e-16  Score=149.72  Aligned_cols=241  Identities=17%  Similarity=0.195  Sum_probs=150.6

Q ss_pred             CcccCCCCchHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHHHHhc---CCCCEEEEcCCCccchH-------------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTHLL---GTGEEIVAGDDLYGGTD-------------  107 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g---~~~~l~~~sG~~A~~~il~ll---~~GD~Vi~~~~~y~~~~-------------  107 (339)
                      +.+.++.++...+|+++|+++++   .+.+++++||++|+.+++.++   ..++.|++.++.|++..             
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            33444567788999999999986   357899999999998654322   34588888766655210             


Q ss_pred             ------------------------------------HHHH------------------------------HHHHHHHHHc
Q 019543          108 ------------------------------------RLLS------------------------------RKIAEMAHAH  121 (339)
Q Consensus       108 ------------------------------------~~~~------------------------------~~I~~la~~~  121 (339)
                                                          ..++                              ++|.++|++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~  258 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN  258 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc
Confidence                                                1111                              8899999999


Q ss_pred             CCEEEEeCCcC-CCCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH
Q 019543          122 GALLLVDNSIM-SPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI  195 (339)
Q Consensus       122 g~~livD~a~a-~g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~  195 (339)
                      |++||+||+|. .+..+...     ....|++  ||||++++ |. ..|++++++ ++++.+.......+...+|+.++.
T Consensus       259 ~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G~-~~G~~~~~~-~i~~~~~~~~~~~t~~~~~~~~aa  333 (453)
T 4ffc_A          259 GVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-GM-PLSAVTGRA-ELMDAVYAGGLGGTYGGNPVTCAA  333 (453)
T ss_dssp             TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TS-SCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred             CCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-Cc-CeEEEEECH-HHHhhhcccCcCCCCCcCHHHHHH
Confidence            99999999985 33222211     1233554  67899986 54 456777764 666655433322345667877766


Q ss_pred             HHhchhhHH--HHHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-------CH
Q 019543          196 CLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------SL  262 (339)
Q Consensus       196 ~~~~l~~~~--~r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-------~~  262 (339)
                      ++..|+.+.  ...++.+++.+++.+.|+    .++.+..+                  ++.|.+++|.+.       +.
T Consensus       334 a~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~  395 (453)
T 4ffc_A          334 AVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV------------------RGRGAMLAIEIVKPGTLEPDA  395 (453)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE------------------EEETTEEEEEEBCTTSCCBCH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EeeceEEEEEEecCcccCCCH
Confidence            666665432  234445555555555554    34443322                  235678888762       34


Q ss_pred             HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       263 ~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.+.++.+.|.+.|+.+..++.                         ..+.+||++.+..+++.++.+.++|+
T Consensus       396 ~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~  443 (453)
T 4ffc_A          396 ALTKSIAAEALSQGVLILTCGT-------------------------FGNVIRLLPPLVIGDDLLDEGITALS  443 (453)
T ss_dssp             HHHHHHHHHHHHTTEECCEECT-------------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEecCCC-------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567788888777776653321                         23679999887665555554444443

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.67  E-value=2.2e-16  Score=152.58  Aligned_cols=235  Identities=16%  Similarity=0.200  Sum_probs=144.0

Q ss_pred             CCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hcC----CC----CEEEEcCCCccchH------------
Q 019543           51 RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LLG----TG----EEIVAGDDLYGGTD------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll~----~G----D~Vi~~~~~y~~~~------------  107 (339)
                      ++.++...+|+++|+++++  .+.+++++||++|+.+++. +..    +|    |+|++.++.|++..            
T Consensus        83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  162 (448)
T 3dod_A           83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELF  162 (448)
T ss_dssp             SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccc
Confidence            3456788999999999984  4689999999999985443 333    44    99999888775321            


Q ss_pred             -----------------------------------H----HHH-----------------------------HHHHHHHH
Q 019543          108 -----------------------------------R----LLS-----------------------------RKIAEMAH  119 (339)
Q Consensus       108 -----------------------------------~----~~~-----------------------------~~I~~la~  119 (339)
                                                         .    .+.                             ++|.++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~  242 (448)
T 3dod_A          163 HHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCT  242 (448)
T ss_dssp             ----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHH
T ss_pred             cccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHH
Confidence                                               0    110                             89999999


Q ss_pred             HcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH-------HHHhcCC
Q 019543          120 AHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-------LQNAEGS  186 (339)
Q Consensus       120 ~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~-------~~~~~~~  186 (339)
                      +||++||+||+|. .|..+..     .....|++  |+||++++ |....|++++++ ++++.+..       .....+.
T Consensus       243 ~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~-~~~~~~~~~~~~~~~~~~~~t~  318 (448)
T 3dod_A          243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAVTFATE-DIYKAFYDDYENLKTFFHGHSY  318 (448)
T ss_dssp             HTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEH-HHHHTTCSCGGGCCCCCCCCTT
T ss_pred             HhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEEEEECH-HHHHHhhhccccCCcccccCCC
Confidence            9999999999986 3322221     12234655  57899986 422456777764 67666643       1112345


Q ss_pred             CCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC---CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC
Q 019543          187 GLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS  261 (339)
Q Consensus       187 ~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~---~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~  261 (339)
                      ..+|+.+++++..|+.+.  ...++.+++.+++.+.|++   ++.+..+                  ++.|.++++.+.+
T Consensus       319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~  380 (448)
T 3dod_A          319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI------------------RQLGFMCGAELVR  380 (448)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECS
T ss_pred             CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EeeeEEEEEEEcc
Confidence            567877777777776542  3355556666666666654   3332211                  2346788888743


Q ss_pred             HHH-----------HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHH
Q 019543          262 LAL-----------SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDL  330 (339)
Q Consensus       262 ~~~-----------~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l  330 (339)
                      ...           +.++++.|...|+.+..+                            .+.|||++.+..+++.++.+
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------~~~iRi~~~~~~t~e~i~~~  432 (448)
T 3dod_A          381 SKETKEPYPADRRIGYKVSLKMRELGMLTRPL----------------------------GDVIAFLPPLASTAEELSEM  432 (448)
T ss_dssp             BTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----------------------------TTEEEECCCTTCCHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHHHHHCCcEEecc----------------------------CCEEEEECCCCCCHHHHHHH
Confidence            211           356777776666654311                            26799987776655555555


Q ss_pred             HHHHh
Q 019543          331 DKALR  335 (339)
Q Consensus       331 ~~al~  335 (339)
                      .++|+
T Consensus       433 l~~l~  437 (448)
T 3dod_A          433 VAIMK  437 (448)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.67  E-value=1.9e-15  Score=146.13  Aligned_cols=231  Identities=11%  Similarity=0.018  Sum_probs=139.4

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcH-HHHHHHH-HHhcCCCCEEEEcCCCccchHHHH-------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSG-MAALAAV-THLLGTGEEIVAGDDLYGGTDRLL-------------------  110 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~-------------------  110 (339)
                      ...+..+++|+.+++ +|.++.+++++| ++|+.++ .+++++||+|+++++.|.+....+                   
T Consensus        54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~  132 (446)
T 2x3l_A           54 HPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTN  132 (446)
T ss_dssp             SCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTS
T ss_pred             CcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccC
Confidence            355678999999999 998776766666 6888754 457899999999988765443211                   


Q ss_pred             -----------H--------------------HHHHHHHHHcCCEEEEeCCcCCCC-C----cCcccCCCeEEEeccccc
Q 019543          111 -----------S--------------------RKIAEMAHAHGALLLVDNSIMSPV-L----SRPLELGADIVMHSATKF  154 (339)
Q Consensus       111 -----------~--------------------~~I~~la~~~g~~livD~a~a~g~-~----~~~~~~~~Di~~~S~sK~  154 (339)
                                 .                    ++|+++|++||+++++|++|+... +    ......++|++++|+||+
T Consensus       133 ~~~~~d~~~l~~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K~  212 (446)
T 2x3l_A          133 HYNKVNLSRLNNDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKT  212 (446)
T ss_dssp             SEEEEEC-------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHHH
T ss_pred             cCCCCCHHHHcCCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCccc
Confidence                       1                    999999999999999999998622 1    122345789999999998


Q ss_pred             cccCCCceEEEEEEcChhHHH--HHHHHHHhc-CCCCChHHHHHHHhchhhHHH-----HHHHHHHHHHHHHHHHhCCCC
Q 019543          155 IAGHSDVMAGVLAVKGERLAK--ELYFLQNAE-GSGLAPFDCWICLRGVKTMAL-----RVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~--~l~~~~~~~-~~~~~~~~a~~~~~~l~~~~~-----r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      ++++.  .+|+++++++ +++  .+......+ .+..+....+.+...++.+..     ..++..++++++.+.     +
T Consensus       213 l~~~~--g~g~l~~~~~-~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~-----g  284 (446)
T 2x3l_A          213 LPALT--MGSVLYIHKN-APYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK-----G  284 (446)
T ss_dssp             SSSCT--TCEEEEEETT-CTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----T
T ss_pred             ccccc--ccEEEEEcCC-cCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-----C
Confidence            87653  3578888764 433  333222222 333344332222222333322     334444445555444     4


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ++.+. +.                ....++|.+.+ ....++.+.|...|+.+...                        
T Consensus       285 ~~~~~-~~----------------~~~~l~i~~~~-~~~~~l~~~L~~~GI~v~~~------------------------  322 (446)
T 2x3l_A          285 FEMLQ-VD----------------DPLKLLIKYEG-FTGHDIQNWFMNAHIYLELA------------------------  322 (446)
T ss_dssp             CEEEE-CS----------------STTEEEEECTT-SCHHHHHHHHHHTTEEESEE------------------------
T ss_pred             CEECc-CC----------------CCeEEEEEeCC-cCHHHHHHHHHHCCCEEEec------------------------
Confidence            43322 11                11246676642 12345666676557765411                        


Q ss_pred             CCCCCCeEEEEeccCCHH---HHHHHHHHHHhc
Q 019543          307 RGLTEDLVRISVGIEDVN---DLISDLDKALRT  336 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~~~---~li~~l~~al~~  336 (339)
                         ..+.+|++++..+++   .+++.|.+.++.
T Consensus       323 ---g~~~iRi~~~~~~t~e~i~l~~aL~~~~~~  352 (446)
T 2x3l_A          323 ---DDYQALAILPLWHHDDTYLFDSLLRKIEDM  352 (446)
T ss_dssp             ---CSSCEEEECCCCCTTCCCCHHHHHHHHHTC
T ss_pred             ---CCCEEEEEeecCCCHHHHHHHHHHHHHHHh
Confidence               124699999863332   556666666554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.67  E-value=7.8e-16  Score=148.57  Aligned_cols=238  Identities=15%  Similarity=0.156  Sum_probs=149.9

Q ss_pred             CCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hcC--------CCCEEEEcCCCccch-------------
Q 019543           51 RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LLG--------TGEEIVAGDDLYGGT-------------  106 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll~--------~GD~Vi~~~~~y~~~-------------  106 (339)
                      ++..+...+|+++++++++  .+.+++++||++|+.+++. +..        +||+|++.++.|++.             
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~  168 (449)
T 3a8u_X           89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN  168 (449)
T ss_dssp             SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence            3456778999999999995  4578899999999976543 332        689999977766431             


Q ss_pred             ------------------------------------HH----HH-----H------------------------HHHHHH
Q 019543          107 ------------------------------------DR----LL-----S------------------------RKIAEM  117 (339)
Q Consensus       107 ------------------------------------~~----~~-----~------------------------~~I~~l  117 (339)
                                                          ..    .+     .                        ++|.++
T Consensus       169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l  248 (449)
T 3a8u_X          169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI  248 (449)
T ss_dssp             HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence                                                11    11     1                        899999


Q ss_pred             HHHcCCEEEEeCCc-CCCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH---------H
Q 019543          118 AHAHGALLLVDNSI-MSPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---------N  182 (339)
Q Consensus       118 a~~~g~~livD~a~-a~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---------~  182 (339)
                      |++||++||+|++| +.|..+..     .....|++  |+||++++ |....|++++++ ++++.+....         .
T Consensus       249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~  324 (449)
T 3a8u_X          249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIAST-EIYQTFMNQPTPEYAVEFPH  324 (449)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEH-HHHHHHHTCSSCTTSCSSCC
T ss_pred             HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECH-HHHHHhhccCcccccccccc
Confidence            99999999999999 45533221     12235766  78899985 312345666664 6766665421         0


Q ss_pred             hcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC
Q 019543          183 AEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  260 (339)
Q Consensus       183 ~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~  260 (339)
                      ..+...+++.++.+...|+.+.  ...++.+++.+++.+.|++++.+..+..               .++.|.+++|.+.
T Consensus       325 ~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~---------------~~~~g~~~~i~~~  389 (449)
T 3a8u_X          325 GYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVID---------------IRNFGLAGAIQIA  389 (449)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEE---------------EEEETTEEEEEEC
T ss_pred             cCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCeEE---------------EeeeEEEEEEEEe
Confidence            1234557776666666666543  3466677778888888876432211100               0225678899875


Q ss_pred             CHH-----HHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          261 SLA-----LSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       261 ~~~-----~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +..     ...++.+.|...|+.++.|                           . +.+|||+.+..+++.++.+.++|+
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g-~~iRis~~~~~t~~~i~~~l~~l~  441 (449)
T 3a8u_X          390 PRDGDAIVRPFEAGMALWKAGFYVRFG---------------------------G-DTLQFGPTFNSKPQDLDRLFDAVG  441 (449)
T ss_dssp             CBTTBSSHHHHHHHHHHHHHTEECEEE---------------------------T-TEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             cCcccccccHHHHHHHHHHCCcEEecC---------------------------C-CEEEEECCCcCCHHHHHHHHHHHH
Confidence            321     2235777776667765421                           1 569999876555555555555443

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.67  E-value=1.2e-15  Score=147.56  Aligned_cols=240  Identities=16%  Similarity=0.188  Sum_probs=151.7

Q ss_pred             cccCCCCchHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchH--------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g---~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~--------------  107 (339)
                      .+.++.++...+|+++|+++++   .+.+++++||++|+.+++. +.  ..++.|++.++.|+|..              
T Consensus        97 ~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~  176 (451)
T 3oks_A           97 CFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYK  176 (451)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTT
T ss_pred             cCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccc
Confidence            3344567788999999999985   3579999999999986543 22  24578888666654210              


Q ss_pred             ----------------------------------------HHHH------------------------------HHHHHH
Q 019543          108 ----------------------------------------RLLS------------------------------RKIAEM  117 (339)
Q Consensus       108 ----------------------------------------~~~~------------------------------~~I~~l  117 (339)
                                                              ..++                              ++|.++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l  256 (451)
T 3oks_A          177 DGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDW  256 (451)
T ss_dssp             TTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred             cCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHH
Confidence                                                    0110                              899999


Q ss_pred             HHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChH
Q 019543          118 AHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  191 (339)
Q Consensus       118 a~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~  191 (339)
                      |++||++||+||+|. .+..+..     .....|++  ||||++++ |. ..|++++++ ++++.+.......+...+|+
T Consensus       257 ~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~-~iG~v~~~~-~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          257 CRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GL-PLSAVTGRA-EIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TS-SCEEEEEEH-HHHTCSCTTSBCCSSSSCHH
T ss_pred             HHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-Cc-ceEEEEECH-HHHhhhcCCCcCCCCCCCHH
Confidence            999999999999995 3322221     12234665  78899986 54 455777764 66665543322334566787


Q ss_pred             HHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-----
Q 019543          192 DCWICLRGVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-----  260 (339)
Q Consensus       192 ~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-----  260 (339)
                      .+++++..|+.+.  ...++.+++.+++.+.|++    ++.+..+                  ++.|.+++|.+.     
T Consensus       332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~G~~~~~~~~~~~~~  393 (451)
T 3oks_A          332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV------------------RGRGAMIAMELVKAGTT  393 (451)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEBSTTSC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EEeeEEEEEEEecCccC
Confidence            7777766666442  2345555556666665543    4443222                  235678888772     


Q ss_pred             --CHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          261 --SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       261 --~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                        +...+.++.+.|.+.|+.+..++.                         ..+.+||++.+..+++.++.+.++|+
T Consensus       394 ~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~  445 (451)
T 3oks_A          394 EPDADLTKALCAGAHAAGVIVLSCGT-------------------------YGNVVRFLPPLSIGDDLLNEGLDVLE  445 (451)
T ss_dssp             CBCHHHHHHHHHHHHHTTEECEEECT-------------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCcEEecCCC-------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence              345567788888777776543211                         23679999887766555555555443

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.67  E-value=3.2e-15  Score=144.91  Aligned_cols=238  Identities=13%  Similarity=0.083  Sum_probs=146.8

Q ss_pred             cCCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hc--------CCCCEEEEcCCCccch------------
Q 019543           50 TRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LL--------GTGEEIVAGDDLYGGT------------  106 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll--------~~GD~Vi~~~~~y~~~------------  106 (339)
                      .++.++..++|+++|+++.+  .+.+++++||++|+.+++. +.        .++|.|++.++.|++.            
T Consensus        90 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  169 (460)
T 3gju_A           90 VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDL  169 (460)
T ss_dssp             TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGG
T ss_pred             cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcc
Confidence            34456788999999999974  4678999999999986544 33        3568999877766421            


Q ss_pred             -------------------------------------HH----HH-----H------------------------HHHHH
Q 019543          107 -------------------------------------DR----LL-----S------------------------RKIAE  116 (339)
Q Consensus       107 -------------------------------------~~----~~-----~------------------------~~I~~  116 (339)
                                                           ..    .+     .                        ++|.+
T Consensus       170 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~  249 (460)
T 3gju_A          170 FHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA  249 (460)
T ss_dssp             GTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred             cccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence                                                 01    11     0                        89999


Q ss_pred             HHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH----HH---h
Q 019543          117 MAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QN---A  183 (339)
Q Consensus       117 la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----~~---~  183 (339)
                      +|++||++||+||+|. .|..+..     .....|++  +|||++++... ..|++++++ ++++.+...    ..   .
T Consensus       250 l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG~~-~lg~v~~~~-~i~~~~~~~~~~~~~~~~~  325 (460)
T 3gju_A          250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSAYA-PLSGVIVAD-RVWQVLVQGSDKLGSLGHG  325 (460)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTSS-CCEEEEEEH-HHHHHHHHHHHHHCSCSCC
T ss_pred             HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCCCC-CeEEEEECH-HHHHHHhcccccccccccC
Confidence            9999999999999996 4332221     12234655  57899986212 346777764 677777532    11   1


Q ss_pred             cCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHH----hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEE
Q 019543          184 EGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSF  257 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L----~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~  257 (339)
                      .+...+|+.++.++..|+.+.  ...++.+++.+++++.|    +.++.+..+.                  +.|.+++|
T Consensus       326 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~~g~~~~~  387 (460)
T 3gju_A          326 WTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR------------------GDGMLAAV  387 (460)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE------------------EETTEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe------------------eeeEEEEE
Confidence            235567877777766666432  23444555555555544    4555443322                  24667788


Q ss_pred             eeCCH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHH
Q 019543          258 LTGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL  326 (339)
Q Consensus       258 ~~~~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~l  326 (339)
                      .+.+.           +.+.++.+.|.+.|+.++.++                          .++.|||++.+..+++.
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------~~~~iRi~~~~~~t~e~  441 (460)
T 3gju_A          388 EFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------------------------QGDILGFAPPLCLTREQ  441 (460)
T ss_dssp             EECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------------------------SSCEEEECCCTTCCHHH
T ss_pred             EEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------------CCCEEEEECCCCCCHHH
Confidence            76421           124567777766677554221                          13679999776655555


Q ss_pred             HHHHHHHHh
Q 019543          327 ISDLDKALR  335 (339)
Q Consensus       327 i~~l~~al~  335 (339)
                      ++.+.++|+
T Consensus       442 i~~~l~~l~  450 (460)
T 3gju_A          442 ADIVVSKTA  450 (460)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444443

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.2e-16  Score=151.23  Aligned_cols=232  Identities=14%  Similarity=0.149  Sum_probs=149.2

Q ss_pred             HHHHHHHHhHhCCC----eEEEcCcHHHHHHHHH-HhcC-----CC---CEEEEcCCCccchHHHHH-------------
Q 019543           58 DALESLLAKLDKAD----RALCFTSGMAALAAVT-HLLG-----TG---EEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        58 ~~le~~la~~~g~~----~~l~~~sG~~A~~~il-~ll~-----~G---D~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      +++.+++++++|.+    .+++++||++|+.+++ ++.+     +|   |+|+++.+.|......+.             
T Consensus       110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~  189 (497)
T 3mc6_A          110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP  189 (497)
T ss_dssp             HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc
Confidence            45555677788865    6888888999997544 3433     56   999999998876654433             


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-------------cCcccC
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-------------SRPLEL  142 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~-------------~~~~~~  142 (339)
                                                          ++|.++|++||+++++|++|+.+..             .+....
T Consensus       190 ~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~  269 (497)
T 3mc6_A          190 TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVP  269 (497)
T ss_dssp             TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTST
T ss_pred             ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCC
Confidence                                                8999999999999999999973211             122235


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HH-hcCC---------CCC---hHHHHHHHhchh--hHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QN-AEGS---------GLA---PFDCWICLRGVK--TMALR  206 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~-~~~~---------~~~---~~~a~~~~~~l~--~~~~r  206 (339)
                      ++|+++.|++|++.++.  ..|+++++++.+ ...... .. ..+.         ..+   ....+.++..+.  .+.++
T Consensus       270 g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~  346 (497)
T 3mc6_A          270 GVTSISCDTHKYGFAPK--GSSVIMYRNSDL-RMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIES  346 (497)
T ss_dssp             TCCEEEEETTTTTCCCS--SCEEEECSSHHH-HTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEECchhhcCCCC--CceeEEecCHHH-HhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHH
Confidence            78999999999986543  357777776432 211100 00 0011         000   122334444333  34667


Q ss_pred             HHHHHHHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcc
Q 019543          207 VEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  285 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~  285 (339)
                      .++..++++++.+.|++ +++++.+..|                 .++++.|...+. ...++.+.|...|+.++.+.  
T Consensus       347 ~~~~~~~~~~l~~~L~~~~~g~~~~~~~-----------------~~~~v~~~~~~~-~~~~l~~~L~~~Gi~v~~~~--  406 (497)
T 3mc6_A          347 CQEIVGAAMKFKKYIQENIPDLDIMGNP-----------------RYSVISFSSKTL-NIHELSDRLSKKGWHFNALQ--  406 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCEECSCC-----------------CSSEEEEECTTT-THHHHHHHHHTTTCBCEECC--
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------CeeEEEEeCCCC-CHHHHHHHHHhCCEEEecCC--
Confidence            78888999999999998 5887543222                 456788876432 34567777777677654221  


Q ss_pred             cceeccccccCCCCCHHHHHhCCCCCCeEEEEec---cCCHHHHHHHHHHHHhc
Q 019543          286 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---IEDVNDLISDLDKALRT  336 (339)
Q Consensus       286 s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg---~e~~~~li~~l~~al~~  336 (339)
                          .                    +..+|++++   .++.++++++|.+++++
T Consensus       407 ----~--------------------~~~~ri~~~~~t~e~i~~~~~~L~~~l~~  436 (497)
T 3mc6_A          407 ----K--------------------PVALHMAFTRLSAHVVDEICDILRTTVQE  436 (497)
T ss_dssp             ----S--------------------SCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred             ----C--------------------CCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence                1                    134688875   46778888888887764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.66  E-value=9e-16  Score=147.03  Aligned_cols=258  Identities=16%  Similarity=0.108  Sum_probs=139.6

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH-hc--------CCCCEEEEcCCCccch-----------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH-LL--------GTGEEIVAGDDLYGGT-----------------  106 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~-ll--------~~GD~Vi~~~~~y~~~-----------------  106 (339)
                      +..+++++++++++|.+  +++++++|++|+.+++. ++        ++||+|++..|.|++.                 
T Consensus        61 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~  140 (432)
T 3a9z_A           61 DIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL  140 (432)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHH
Confidence            45689999999999974  67777888999976443 43        5899888877776532                 


Q ss_pred             HHHHH-------------------------------------------------HHHHHHHHHcC----------CEEEE
Q 019543          107 DRLLS-------------------------------------------------RKIAEMAHAHG----------ALLLV  127 (339)
Q Consensus       107 ~~~~~-------------------------------------------------~~I~~la~~~g----------~~liv  127 (339)
                      ..+.+                                                 ++|.++|++||          +++|+
T Consensus       141 ~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~liv  220 (432)
T 3a9z_A          141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHT  220 (432)
T ss_dssp             HHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             HHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEE
Confidence            11100                                                 89999999999          99999


Q ss_pred             eCCcCCCCCc-CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-------HHhcCCCCChHHHHHHHhc
Q 019543          128 DNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRG  199 (339)
Q Consensus       128 D~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-------~~~~~~~~~~~~a~~~~~~  199 (339)
                      |++|+.+... +....+.|+++.|+||++| +  . .|+++++++.....++..       ........++...+.+...
T Consensus       221 Dea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aa  296 (432)
T 3a9z_A          221 DAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--R-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKA  296 (432)
T ss_dssp             ECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--S-CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHH
T ss_pred             EchhhhCCcccChhhcCCCEEEEehhHhcC-C--c-ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHH
Confidence            9999876432 1123468999999999875 2  3 678888763212222110       1111223444433333233


Q ss_pred             hhh----HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCc
Q 019543          200 VKT----MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKY  274 (339)
Q Consensus       200 l~~----~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~  274 (339)
                      ++.    ++...++..++++++.+.|++++++.. .++.....         ....+.+++|.+.+. .....+.+.++ 
T Consensus       297 l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~-  365 (432)
T 3a9z_A          297 ADLVSENCETYEAHMRDIRDYLEERLEAEFGKRI-HLNSRFPG---------VERLPNTCNFSIQGSQLRGYMVLAQCQ-  365 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGE-EESSCCTT---------CCBCTTEEEEEECSTTCCHHHHHHHCS-
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcE-EEeCCCCc---------ccCCCCEEEEEeCCCCCcHHHHHHHhc-
Confidence            332    344556666778888888877554432 22111000         011345788877531 12345555553 


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT----EDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                       ++.++.|...... ++.     . +.......|+.    ++.||||++...+++.++.+.++|+
T Consensus       366 -~i~~~~G~~~~~~-~~~-----~-~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~  422 (432)
T 3a9z_A          366 -TLLASVGASCHSD-HED-----R-PSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLK  422 (432)
T ss_dssp             -SEECBSSCGGGGG-GTT-----S-CCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             -CeEEeccccccCC-CCC-----C-ccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHH
Confidence             5666666432210 000     0 01122334543    4789999996554444444444443

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.66  E-value=3.4e-15  Score=141.63  Aligned_cols=167  Identities=12%  Similarity=0.080  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhHhC--------CCeEEE--cCcHHHHHHHHH-H---hcCCCCEEEEcCCCccchHHHHH-----------
Q 019543           57 RDALESLLAKLDK--------ADRALC--FTSGMAALAAVT-H---LLGTGEEIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~~~l~--~~sG~~A~~~il-~---ll~~GD~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      ..++++.++++++        .++.++  +++|++|+..++ .   +++|||+|+++++.|.+....++           
T Consensus        73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~  152 (401)
T 7aat_A           73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRY  152 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeee
Confidence            5567777777654        456655  788899997543 2   34899999999998876653332           


Q ss_pred             ---------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc------c
Q 019543          112 ---------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP------L  140 (339)
Q Consensus       112 ---------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~------~  140 (339)
                                                                   ++|+++|++||+++|+|++|........      +
T Consensus       153 ~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~  232 (401)
T 7aat_A          153 YDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWAL  232 (401)
T ss_dssp             EETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred             eccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHH
Confidence                                                         8899999999999999999975543321      1


Q ss_pred             -----cCCCeEEEeccccccccCCCceEEEEEE--cChh----HHHHHHHHHHhcCCCCChHHHHHHHhc----------
Q 019543          141 -----ELGADIVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYFLQNAEGSGLAPFDCWICLRG----------  199 (339)
Q Consensus       141 -----~~~~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~----l~~~l~~~~~~~~~~~~~~~a~~~~~~----------  199 (339)
                           .....++++|+||.++.+|.++ |++++  .+++    +...++..........+...+..+...          
T Consensus       233 ~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  311 (401)
T 7aat_A          233 RHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEW  311 (401)
T ss_dssp             HHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHhcCCcEEEEecCCcccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence                 1233589999999999777654 55554  2334    334444433333333333333333222          


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          200 VKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       200 l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .+.+....++..++.+++.+.|+++
T Consensus       312 ~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          312 LVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2234555666677788888888765

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.66  E-value=7e-16  Score=151.68  Aligned_cols=237  Identities=16%  Similarity=0.149  Sum_probs=151.0

Q ss_pred             CCchHHHHH----HHHHhHhCCC----eE--EEcCcHHHHHHHHH-HhcCCC--------CEEEEcCCCccchHHHHH--
Q 019543           53 GNPTRDALE----SLLAKLDKAD----RA--LCFTSGMAALAAVT-HLLGTG--------EEIVAGDDLYGGTDRLLS--  111 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~----~~--l~~~sG~~A~~~il-~ll~~G--------D~Vi~~~~~y~~~~~~~~--  111 (339)
                      ..|...++|    +++++++|.+    .+  ++++||++|+..++ .+.++|        |+|+++.+.|.+....+.  
T Consensus       133 ~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~  212 (514)
T 3mad_A          133 LWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF  212 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHc
Confidence            344444444    5558888865    45  88999999998544 455665        999999999887654433  


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---------
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL---------  136 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~---------  136 (339)
                                                                    ++|.++|++||++|++|++|+.+..         
T Consensus       213 G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~  292 (514)
T 3mad_A          213 GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYP  292 (514)
T ss_dssp             TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCC
T ss_pred             CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCC
Confidence                                                          9999999999999999999976532         


Q ss_pred             ---cCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hh---------cCCCCCh---HHHHHHHhch
Q 019543          137 ---SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA---------EGSGLAP---FDCWICLRGV  200 (339)
Q Consensus       137 ---~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~---------~~~~~~~---~~a~~~~~~l  200 (339)
                         .+....++|++++|++|++.++.  ..|+++++++.+........ ..         .....+.   ..++.++..+
T Consensus       293 ~~~~~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l  370 (514)
T 3mad_A          293 VPPFDFRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSL  370 (514)
T ss_dssp             CCCCSTTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCcccccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHH
Confidence               11123478999999999976543  35677777643321110000 00         0111111   2233333333


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceee
Q 019543          201 --KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSIT  278 (339)
Q Consensus       201 --~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~  278 (339)
                        +.++++.++..++++++.+.|+++++++.+. +                 ..++++|...+. ...++.+.|...|+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~-----------------~~~~~~~~~~~~-~~~~l~~~L~~~Gi~  431 (514)
T 3mad_A          371 GEEGYLDATRRILQAADRLKAGVRAIPSLKILG-D-----------------PLWVIAVASDEL-NIYQVMEEMAGRGWR  431 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESS-C-----------------CSSEEEEECSSS-CHHHHHHHHHTTTCB
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeC-C-----------------CeEEEEEeCCCC-CHHHHHHHHHhcCCE
Confidence              3356778888899999999999987765322 1                 234788876432 245677777666665


Q ss_pred             cccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec-----cCCHHHHHHHHHHHHhc
Q 019543          279 VSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-----IEDVNDLISDLDKALRT  336 (339)
Q Consensus       279 v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg-----~e~~~~li~~l~~al~~  336 (339)
                      ++ |.      .                   .++.+|++++     .++.+++++.|.+++++
T Consensus       432 v~-g~------~-------------------~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          432 LN-GL------H-------------------RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             CE-EE------T-------------------TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             ec-cC------C-------------------CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            41 10      0                   1256999998     25667777777777653

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.66  E-value=1.6e-15  Score=146.96  Aligned_cols=239  Identities=15%  Similarity=0.160  Sum_probs=149.1

Q ss_pred             CcccCCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hcC--------CCCEEEEcCCCccch---------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LLG--------TGEEIVAGDDLYGGT---------  106 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll~--------~GD~Vi~~~~~y~~~---------  106 (339)
                      +.+.++.++..++|+++|+++++  .+.+++++||++|+..++. +.+        ++|.|++.++.|++.         
T Consensus        86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A           86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence            33445567889999999999984  5689999999999985443 433        578999877766531         


Q ss_pred             ---------------------------------------HH----HHH-----------------------------HHH
Q 019543          107 ---------------------------------------DR----LLS-----------------------------RKI  114 (339)
Q Consensus       107 ---------------------------------------~~----~~~-----------------------------~~I  114 (339)
                                                             ..    .+.                             ++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l  245 (459)
T 4a6r_A          166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI  245 (459)
T ss_dssp             CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence                                                   11    110                             899


Q ss_pred             HHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH---HHHhcC
Q 019543          115 AEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---LQNAEG  185 (339)
Q Consensus       115 ~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~---~~~~~~  185 (339)
                      .++|++||++||+||+|. .|..+..     .....|++  +|||++++.+.. .|+++++ +++++.+..   .....+
T Consensus       246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~--t~sK~l~gg~~~-lg~v~~~-~~i~~~~~~~~~~~~~~t  321 (459)
T 4a6r_A          246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLF--TAAKGLSSGYLP-IGAVFVG-KRVAEGLIAGGDFNHGFT  321 (459)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSSC-CEEEEEC-HHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--ehhhhhcCCCCC-ccceeeC-HHHHHHhhcCCCcccCCC
Confidence            999999999999999985 3332221     12234665  578999864334 4567676 467777762   222234


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHH-HHHHHHHHHH----hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEe
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQ-DNAQKIAEFL----ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL  258 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~-~~a~~l~~~L----~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~  258 (339)
                      ...+|+.+++++..|+.+.  ...++.+ ++.+++.+.|    +.++.+..+.                  +.|.++.|.
T Consensus       322 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------------------~~g~~~~~~  383 (459)
T 4a6r_A          322 YSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR------------------GVGMVQAFT  383 (459)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE------------------EETTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE------------------EEEEEEEEE
Confidence            4567877777766666442  2344444 4555555555    4444443222                  246677777


Q ss_pred             eCCH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHH
Q 019543          259 TGSL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  327 (339)
Q Consensus       259 ~~~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li  327 (339)
                      +.+.           +.+.++.+.|.+.|+.+..+                           . +.|||++.+..+++.+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g-~~iRi~~~~~~t~e~i  435 (459)
T 4a6r_A          384 LVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC---------------------------G-DHIVSAPPLVMTRAEV  435 (459)
T ss_dssp             ECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE---------------------------T-TEEEECCCTTCCHHHH
T ss_pred             EecCccccccccchHHHHHHHHHHHHHCCeEEecC---------------------------C-CEEEEECCCCCCHHHH
Confidence            6321           22566777776667655421                           1 5799997766555555


Q ss_pred             HHHHHHHh
Q 019543          328 SDLDKALR  335 (339)
Q Consensus       328 ~~l~~al~  335 (339)
                      +.+.++|+
T Consensus       436 ~~~l~~l~  443 (459)
T 4a6r_A          436 DEMLAVAE  443 (459)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444443

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.66  E-value=1.7e-15  Score=147.03  Aligned_cols=209  Identities=13%  Similarity=0.133  Sum_probs=135.0

Q ss_pred             cCCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hcC-------CC-CEEEEcCCCccchH-----------
Q 019543           50 TRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LLG-------TG-EEIVAGDDLYGGTD-----------  107 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll~-------~G-D~Vi~~~~~y~~~~-----------  107 (339)
                      +++.++...+|+++|+++++  .+.+++++||++|+.+++. +.+       +| +.|++.++.|++..           
T Consensus       113 ~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~  192 (457)
T 3tfu_A          113 GGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHG  192 (457)
T ss_dssp             SSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcc
Confidence            45567888999999999995  4688999999999986443 332       55 47887666654310           


Q ss_pred             ----------------------------H----HHH-----------------------------HHHHHHHHHcCCEEE
Q 019543          108 ----------------------------R----LLS-----------------------------RKIAEMAHAHGALLL  126 (339)
Q Consensus       108 ----------------------------~----~~~-----------------------------~~I~~la~~~g~~li  126 (339)
                                                  .    .+.                             ++|.++|++||++||
T Consensus       193 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI  272 (457)
T 3tfu_A          193 GMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLI  272 (457)
T ss_dssp             ---------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEE
T ss_pred             cccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence                                        0    110                             889999999999999


Q ss_pred             EeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-----HHhcCCCCChHHHHH
Q 019543          127 VDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-----QNAEGSGLAPFDCWI  195 (339)
Q Consensus       127 vD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-----~~~~~~~~~~~~a~~  195 (339)
                      +||++. .|..+..     .....|++  ||||.++|. ....|++++++ ++++.+...     ....+...+|+.++.
T Consensus       273 ~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG-~~~lG~v~~~~-~i~~~~~~~~~~~~~~~~t~~~n~~a~aa  348 (457)
T 3tfu_A          273 FDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGG-YLSLAATLCTA-DVAHTISAGAAGALMHGPTFMANPLACAV  348 (457)
T ss_dssp             EECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTT-SSCCEEEEEEH-HHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred             EEcCccCCccccchhHhHhcCCCceEE--EEChhhhCC-CcceEEEEEcH-HHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence            999985 3322221     12245766  789999862 12356777764 677766421     111234567877777


Q ss_pred             HHhchhhHH--HHHHHHHHHHHHHHHHHhCC---CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHc
Q 019543          196 CLRGVKTMA--LRVEKQQDNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVE  270 (339)
Q Consensus       196 ~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~  270 (339)
                      ++..|+.+.  ...++.+++.+++.+.|+++   +.+..+                  ++.|.+++|.+.+...+.++.+
T Consensus       349 a~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------r~~G~~~~i~l~~~~~~~~~~~  410 (457)
T 3tfu_A          349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDV------------------RVCGAIGVIECDRPVDLAVATP  410 (457)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEE------------------EECSSCEEEEESSCCCHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeee------------------ecCCeEEEEEECCcccHHHHHH
Confidence            776666542  33556667777888888764   232211                  2356788888754333567777


Q ss_pred             cCCcceeecc
Q 019543          271 TTKYFSITVS  280 (339)
Q Consensus       271 ~L~~~~i~v~  280 (339)
                      .|.+.|+.++
T Consensus       411 ~l~~~Gv~v~  420 (457)
T 3tfu_A          411 AALDRGVWLR  420 (457)
T ss_dssp             HHHHTTEECC
T ss_pred             HHHHCCeEEE
Confidence            7766677554

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.65  E-value=5.2e-15  Score=141.83  Aligned_cols=236  Identities=14%  Similarity=0.118  Sum_probs=149.5

Q ss_pred             CCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-h---cC----CCCEEEEcCCCccch--------------
Q 019543           51 RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-L---LG----TGEEIVAGDDLYGGT--------------  106 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-l---l~----~GD~Vi~~~~~y~~~--------------  106 (339)
                      ++.++...+++++++++++  .+++++++||++|+.+++. +   .+    |||+|++.++.|++.              
T Consensus        82 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~  161 (429)
T 1s0a_A           82 GITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSM  161 (429)
T ss_dssp             SEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTT
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhh
Confidence            3345678899999999994  5688899999999975443 2   23    699999988776531              


Q ss_pred             ---------------------------H------HHHH-----------------------------HHHHHHHHHcCCE
Q 019543          107 ---------------------------D------RLLS-----------------------------RKIAEMAHAHGAL  124 (339)
Q Consensus       107 ---------------------------~------~~~~-----------------------------~~I~~la~~~g~~  124 (339)
                                                 .      ..++                             ++|.++|++||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~  241 (429)
T 1s0a_A          162 HSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGIL  241 (429)
T ss_dssp             GGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCE
T ss_pred             cccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence                                       0      0110                             8899999999999


Q ss_pred             EEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-----HhcCCCCChHHH
Q 019543          125 LLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-----NAEGSGLAPFDC  193 (339)
Q Consensus       125 livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-----~~~~~~~~~~~a  193 (339)
                      +|+||+|+ .+..+.     ......|++  |+||.+++ |-...|++++++ ++++.+....     ...+...++...
T Consensus       242 li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~iG~~~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~  317 (429)
T 1s0a_A          242 LIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTLSATLTTR-EVAETISNGEAGCFMHGPTFMGNPLAC  317 (429)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCCEEEEECH-HHHHHHHTSTTSSCSCCCTTTTCHHHH
T ss_pred             EEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccceEEEeCH-HHHHHhhcCCCcccccCCCCCCCHHHH
Confidence            99999996 432221     112345765  68899985 313456777764 6666665310     011234566666


Q ss_pred             HHHHhchhhH--HHHHHHHHHHHHHHHHHHhCC---CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHH
Q 019543          194 WICLRGVKTM--ALRVEKQQDNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHV  268 (339)
Q Consensus       194 ~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~  268 (339)
                      +.+...++.+  +...++..++.+++.+.|+++   +.+..+                  .+.+.+++|.+.+.....++
T Consensus       318 ~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~l  379 (429)
T 1s0a_A          318 AAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV------------------RVLGAIGVVETTHPVNMAAL  379 (429)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEE------------------EEETTEEEEEESSCBCHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEEE------------------EEeeEEEEEEECCcccHHHH
Confidence            5555555543  234556667788888888764   333211                  12456788887532234466


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .+.|...|+.++.                            ..+.||||++...+++.++.+.++|++
T Consensus       380 ~~~l~~~Gi~v~~----------------------------~~~~iRis~~~~~t~e~i~~~~~~l~~  419 (429)
T 1s0a_A          380 QKFFVEQGVWIRP----------------------------FGKLIYLMPPYIILPQQLQRLTAAVNR  419 (429)
T ss_dssp             HHHHHHTTEECCC----------------------------BTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEec----------------------------cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6666666776541                            025799998877776666666666653

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.65  E-value=5.1e-15  Score=150.70  Aligned_cols=174  Identities=14%  Similarity=0.067  Sum_probs=120.0

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHH-HHHHH-HHHhcCCCCEEEEcCCCccch-------------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGM-AALAA-VTHLLGTGEEIVAGDDLYGGT-------------------------  106 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~-~A~~~-il~ll~~GD~Vi~~~~~y~~~-------------------------  106 (339)
                      .+.++++|+.+|+++|++.++++++|+ +|+.+ +.++++|||+|+++.+.|...                         
T Consensus       172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~  251 (730)
T 1c4k_A          172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFI  251 (730)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCE
T ss_pred             hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccCcc
Confidence            457899999999999999999888885 78875 556899999999987654211                         


Q ss_pred             -------------HHH----------H----H----------------HHHHHHHHHcCCEEEEeCCcCCCC-Cc-----
Q 019543          107 -------------DRL----------L----S----------------RKIAEMAHAHGALLLVDNSIMSPV-LS-----  137 (339)
Q Consensus       107 -------------~~~----------~----~----------------~~I~~la~~~g~~livD~a~a~g~-~~-----  137 (339)
                                   ...          .    +                ++|+++|++||++|++|++|+.+. +.     
T Consensus       252 g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g  331 (730)
T 1c4k_A          252 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN  331 (730)
T ss_dssp             EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGG
T ss_pred             CCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCC
Confidence                         111          1    3                999999999999999999997542 11     


Q ss_pred             -CcccC---CCe----EEEeccccccccCCCceEEEEEEcChhH--------HHHHHHHHH-hcCCCCChHHHHH---HH
Q 019543          138 -RPLEL---GAD----IVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQN-AEGSGLAPFDCWI---CL  197 (339)
Q Consensus       138 -~~~~~---~~D----i~~~S~sK~l~g~~~~~gG~v~~~~~~l--------~~~l~~~~~-~~~~~~~~~~a~~---~~  197 (339)
                       .++..   ++|    ++++|+||+++|+.  .||+++.+++.+        ...+..... ..++..+....+.   +.
T Consensus       332 ~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~  409 (730)
T 1c4k_A          332 SSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNA  409 (730)
T ss_dssp             GCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             cCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence             12322   677    99999999998653  478887765432        123333322 2344444433222   22


Q ss_pred             hchh--hHHHHHHHHHHHHHHHHHHHhC-CCCceE
Q 019543          198 RGVK--TMALRVEKQQDNAQKIAEFLAS-HPRVKK  229 (339)
Q Consensus       198 ~~l~--~~~~r~~~~~~~a~~l~~~L~~-~~~i~~  229 (339)
                      ..++  ...+++++..++++++++.|++ .++++.
T Consensus       410 ~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v  444 (730)
T 1c4k_A          410 AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRP  444 (730)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEE
Confidence            2222  2456788888999999999988 677653

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.65  E-value=6.1e-15  Score=141.06  Aligned_cols=167  Identities=15%  Similarity=0.086  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhHhC--------CC--eEEEcCcHHHHHHHH---HHhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLDK--------AD--RALCFTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~--~~l~~~sG~~A~~~i---l~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+|++.++++++        .+  +++++++|++|+..+   +++++|||+|+++++.|.+....+.            
T Consensus        94 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~  173 (420)
T 4f4e_A           94 IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYY  173 (420)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECE
T ss_pred             cHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeee
Confidence            4456666665542        23  567777779999754   3568999999999998876543332            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----c---
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----P---  139 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~---  139 (339)
                                                                  ++|+++|++||+++|+|++|+......     .   
T Consensus       174 ~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~  253 (420)
T 4f4e_A          174 DAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRL  253 (420)
T ss_dssp             ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHH
T ss_pred             ccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHH
Confidence                                                        789999999999999999996544321     1   


Q ss_pred             c--cCCCeEEEeccccccccCCCceEEEEE--EcChhHHHHHH-HHH---HhcCCCCChHHHHHHHhch----------h
Q 019543          140 L--ELGADIVMHSATKFIAGHSDVMAGVLA--VKGERLAKELY-FLQ---NAEGSGLAPFDCWICLRGV----------K  201 (339)
Q Consensus       140 ~--~~~~Di~~~S~sK~l~g~~~~~gG~v~--~~~~~l~~~l~-~~~---~~~~~~~~~~~a~~~~~~l----------~  201 (339)
                      +  ..+.+++++|+||.++.+|..+ |+++  .+++++++.+. ...   +......+...++.+...+          +
T Consensus       254 ~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  332 (420)
T 4f4e_A          254 FAAANLNVFVSSSFSKSFSLYGERV-GALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQ  332 (420)
T ss_dssp             HHHTTCCEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHhcCCCEEEEEeCCccCcCcCCCc-EEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence            1  1244699999999999766554 5553  33445554432 222   2222233444333322222          2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCC
Q 019543          202 TMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .++...++..++.+++.+.|+++
T Consensus       333 ~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          333 ELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            24555666778888888888876

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.65  E-value=7.9e-15  Score=140.62  Aligned_cols=242  Identities=13%  Similarity=0.118  Sum_probs=142.9

Q ss_pred             CCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hc--------CCCCEEEEcCCCccchH------------
Q 019543           51 RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LL--------GTGEEIVAGDDLYGGTD------------  107 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll--------~~GD~Vi~~~~~y~~~~------------  107 (339)
                      ++.++..++|+++++++++  .+++++++||++|+..++. +.        .++|+|++.++.|++..            
T Consensus        68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  147 (430)
T 3i4j_A           68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR  147 (430)
T ss_dssp             TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence            3456788999999999995  4688899999999985443 33        45789998877665321            


Q ss_pred             ---------------------------------HHH-----H-------------------------HHHHHHHHHcCCE
Q 019543          108 ---------------------------------RLL-----S-------------------------RKIAEMAHAHGAL  124 (339)
Q Consensus       108 ---------------------------------~~~-----~-------------------------~~I~~la~~~g~~  124 (339)
                                                       ..+     .                         ++|.++|++||++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~  227 (430)
T 3i4j_A          148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII  227 (430)
T ss_dssp             --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred             ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence                                             011     1                         8899999999999


Q ss_pred             EEEeCCcC-CCCCcCc-----c-cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH----HHhcCCCCChHHH
Q 019543          125 LLVDNSIM-SPVLSRP-----L-ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL----QNAEGSGLAPFDC  193 (339)
Q Consensus       125 livD~a~a-~g~~~~~-----~-~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----~~~~~~~~~~~~a  193 (339)
                      ||+||+|. .+..+..     . ....|++  +|||++++ |-...|+++++ +++++.+...    ....+...+++.+
T Consensus       228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~~~~~-~~i~~~~~~~~~~~~~~~t~~~~~~~~  303 (430)
T 3i4j_A          228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAGLLAA-PQVYETVMGGSGAFMHGFTYAGHPVSV  303 (430)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEEEEEC-HHHHHHHHHTTCBCCCCCTTTTCHHHH
T ss_pred             EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEEEEEC-HHHHHHHhccCCcccccCCCCCCHHHH
Confidence            99999986 3322211     1 2224555  57899995 40334677775 4677777653    1123355677776


Q ss_pred             HHHHhchhhH--HHHHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-----
Q 019543          194 WICLRGVKTM--ALRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-----  262 (339)
Q Consensus       194 ~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-----  262 (339)
                      ++++..|+.+  +...++.+++.+++.+.|+    .++.+..+.                  +.|.++++.+.+.     
T Consensus       304 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~g~~~~~~~~~~~~~~~  365 (430)
T 3i4j_A          304 AAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVR------------------GTGLLLGVVLGDLATGQA  365 (430)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE------------------EETTEEEEEEC-------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE------------------EEEEEEEEEeccccccCC
Confidence            6666666543  2234455555555555554    345443221                  2466888876432     


Q ss_pred             ----HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          263 ----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       263 ----~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                          +.+.++.+.|.+.|+.+..+..      +..              |..++.+||++.+..+++.++.+.++|
T Consensus       366 ~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~--------------~~~~~~iRi~~~~~~t~e~i~~~l~~l  421 (430)
T 3i4j_A          366 FETPGIASRIGAAALKRGLITYPGSG------AEP--------------NGRGDHLLLGPPLSITAAEVDGLLALL  421 (430)
T ss_dssp             -----CHHHHHHHHHHTTEECC-------------------------------CEEEECCCTTCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCCCEEEeccc------ccC--------------CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence                1235677777777887764321      100              113578999977555444444444433

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.64  E-value=9.1e-15  Score=139.93  Aligned_cols=231  Identities=14%  Similarity=0.118  Sum_probs=149.7

Q ss_pred             cCCCCchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHHH-hcC-CCCEEEEcCCCccc-------------------
Q 019543           50 TRSGNPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH-LLG-TGEEIVAGDDLYGG-------------------  105 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il~-ll~-~GD~Vi~~~~~y~~-------------------  105 (339)
                      +++.++...++++++++++|.   +++++++||++|+..++. +.. +||+|++.++.|++                   
T Consensus        81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            345567889999999999985   467888889999986543 322 39999998776641                   


Q ss_pred             --------------------------------------hH-HHH------H------------------------HHHHH
Q 019543          106 --------------------------------------TD-RLL------S------------------------RKIAE  116 (339)
Q Consensus       106 --------------------------------------~~-~~~------~------------------------~~I~~  116 (339)
                                                            .. ..+      .                        ++|.+
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence                                                  00 111      2                        89999


Q ss_pred             HHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCC-CceEEEEEEcChhHHHHHHHHHHhcCCCCC
Q 019543          117 MAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYFLQNAEGSGLA  189 (339)
Q Consensus       117 la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~-~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~  189 (339)
                      +|++||+++|+||+|. .+..+..     .....|++  ||||.+++ | .. .|++++++ +++ .+ ......+...+
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~r-iG~~~~~~-~~~-~~-~~~~~~t~~~n  313 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMP-IGATIFRK-DLD-FK-PGMHSNTFGGN  313 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSC-CEEEEEEG-GGC-CC-------CCCCC
T ss_pred             HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-Cccc-eEEEEEch-Hhh-cC-CcccCCCCCCC
Confidence            9999999999999996 4332221     12234655  78999995 4 44 46676765 455 44 21222345567


Q ss_pred             hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHHHHHH
Q 019543          190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLALSKHV  268 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~~~~~  268 (339)
                      +...+.+...|+.+....++.+++.+++.+.|+++  +..+                  .+.|.+++|.+. +..... +
T Consensus       314 ~~~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~------------------~~~g~~~~i~~~~~~~~~~-~  372 (419)
T 2eo5_A          314 ALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDV------------------RGIGLAWGLEYNEKKVRDR-I  372 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEE------------------EEETTEEEEECSCHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhe------------------EeeeEEEEEEEecCccHHH-H
Confidence            77776666667665556666778888888888765  2211                  124678888874 323355 7


Q ss_pred             HccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          269 VETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       269 ~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .+.|...|+.++.+                           .++.||||+++..+++.++.+.++|+
T Consensus       373 ~~~l~~~Gv~v~~~---------------------------~~~~lRis~~~~~t~e~i~~~l~~l~  412 (419)
T 2eo5_A          373 IGESFKRGLLLLPA---------------------------GRSAIRVIPPLVISEEEAKQGLDILK  412 (419)
T ss_dssp             HHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            77776777765532                           13679999887665555555555544

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.64  E-value=4.6e-15  Score=140.52  Aligned_cols=251  Identities=19%  Similarity=0.177  Sum_probs=152.5

Q ss_pred             CCCcccCC--CCchHHHHHH----HHHhHhCCCeE-----EEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH-----
Q 019543           45 GPYDYTRS--GNPTRDALES----LLAKLDKADRA-----LCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD-----  107 (339)
Q Consensus        45 ~~~~y~r~--~~~~~~~le~----~la~~~g~~~~-----l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~-----  107 (339)
                      .+|...|+  +...++++|.    +..++||++++     +=..||+.||.+ .+++++|||.|+..+...+|..     
T Consensus        84 EGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~  163 (490)
T 3ou5_A           84 EGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYM  163 (490)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC------------
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCccccccc
Confidence            34555554  5567777775    45678998875     556799999986 5569999999998776433321     


Q ss_pred             ----------HHHH-------------------------------------------HHHHHHHHHcCCEEEEeCCc---
Q 019543          108 ----------RLLS-------------------------------------------RKIAEMAHAHGALLLVDNSI---  131 (339)
Q Consensus       108 ----------~~~~-------------------------------------------~~I~~la~~~g~~livD~a~---  131 (339)
                                .+++                                           +++.++|++.|++|++|-+|   
T Consensus       164 ~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaG  243 (490)
T 3ou5_A          164 SDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISG  243 (490)
T ss_dssp             ----------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHH
T ss_pred             CCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhh
Confidence                      0001                                           99999999999999999999   


Q ss_pred             --CCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHHHHhcCCCCCh---HH
Q 019543          132 --MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAP---FD  192 (339)
Q Consensus       132 --a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~--------------~l~~~l~~~~~~~~~~~~~---~~  192 (339)
                        +.|.+.+|++. +||+++|.+|+|.||   +||+|.++++              ++.+++.... +.|..-.|   ..
T Consensus       244 LVA~g~~psP~~~-ADvVTtTTHKTLrGP---rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aV-FPg~qggp~~h~I  318 (490)
T 3ou5_A          244 LVAAKVIPSPFKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAV-FPSLQGGPHNHAI  318 (490)
T ss_dssp             HHHTTSSCCGGGT-CSEEEEESSSTTCSC---SCEEEEEECSEEEECC--CCEEECCCHHHHHHHH-TTTTCSSCCHHHH
T ss_pred             hhcccccCCcccc-ceEEeccccccccCC---CceEEEeccccccccccccchhHHHHHHHHHhhc-CccccccchHHHH
Confidence              45677888886 899999999999976   5899998863              3445554432 22322223   22


Q ss_pred             HHHHH----hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHH
Q 019543          193 CWICL----RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKH  267 (339)
Q Consensus       193 a~~~~----~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~  267 (339)
                      ++.+.    ..-..+....++..+|++.|++.|.+. +++.|.  +              ....+++.+.+.+.. ...+
T Consensus       319 AAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvs--G--------------gTdnHlvLvDl~~~g~tG~~  381 (490)
T 3ou5_A          319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVS--G--------------GTDNHLVLVDLRPKGLDGAR  381 (490)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG--G--------------SCSSSEEEEECGGGTCCHHH
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeec--C--------------CCCceEEEEeccccCCCHHH
Confidence            33222    122346778888899999999999876 333332  1              235678877763221 1223


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe--------ccCCHHHHHHHHHHHHh
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALR  335 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv--------g~e~~~~li~~l~~al~  335 (339)
                      ..+.|...+|.++--      ..|.-            +....++-|||..        +.++++++.+-|.++|.
T Consensus       382 ae~~Le~agItvNkN------~iP~D------------~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          382 AERVLELVSITANKN------TCPGD------------RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHTTEECEEE------CCTTC------------CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcEECCC------CCCCC------------CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            333444556665521      01210            0002345689875        44677777777777764

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.64  E-value=5.5e-15  Score=137.38  Aligned_cols=239  Identities=12%  Similarity=0.044  Sum_probs=151.1

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHH---------------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDR---------------  108 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~---------------  108 (339)
                      |.++++..+..+++++++++++|.+  ++++++||++|+..++ .++++||+|+++++.|++...               
T Consensus        41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~  120 (359)
T 1svv_A           41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAP  120 (359)
T ss_dssp             CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEEC
T ss_pred             ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEe
Confidence            5555566788999999999999864  5788889999998654 478899999999887654321               


Q ss_pred             -------------HH-----------H-------------------HHHHHHHHHcCCEEEEeCCc---CCCCCcCcc--
Q 019543          109 -------------LL-----------S-------------------RKIAEMAHAHGALLLVDNSI---MSPVLSRPL--  140 (339)
Q Consensus       109 -------------~~-----------~-------------------~~I~~la~~~g~~livD~a~---a~g~~~~~~--  140 (339)
                                   .+           +                   ++|.++|++||+++|+|++|   +.+......  
T Consensus       121 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  200 (359)
T 1svv_A          121 CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTL  200 (359)
T ss_dssp             CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCH
T ss_pred             CCCCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhh
Confidence                         00           0                   78999999999999999999   433322111  


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC--ChHHHHHHHhch--hhHHHHHHHHHHH
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL--APFDCWICLRGV--KTMALRVEKQQDN  213 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~--~~~~a~~~~~~l--~~~~~r~~~~~~~  213 (339)
                         ....|+++.|++|+ +++  ...|++++++ ++.+.++......+...  +..........+  +.++...++..++
T Consensus       201 ~~~~~~~d~~~~s~~K~-g~~--~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  276 (359)
T 1svv_A          201 ADIARLTDMFYIGATKA-GGM--FGEALIILND-ALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKM  276 (359)
T ss_dssp             HHHHHHCSEEEEECTTT-TCS--SCEEEEECSG-GGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             hhhhhcCCEEEEecccC-CCC--CceEEEEEcc-cHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHH
Confidence               13579999999997 432  2247887764 56666655432222211  211111111122  2345566777788


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcc-eeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYF-SITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~-~i~v~~G~~~s~~~~p~  292 (339)
                      .+++.+.| +.++++. ..|                ..+.++++.+.     .++.+.|... |+.+ +|.      .+ 
T Consensus       277 ~~~l~~~L-~~~~~~~-~~~----------------~~~~~~~~~~~-----~~~~~~l~~~~gi~v-~~~------~~-  325 (359)
T 1svv_A          277 AAILKAGL-EACGIRL-AWP----------------SASNQLFPILE-----NTMIAELNNDFDMYT-VEP------LK-  325 (359)
T ss_dssp             HHHHHHHH-HHTTCCB-SSC----------------CSSSEECBEEE-----HHHHHHHTTTEECEE-EEE------ET-
T ss_pred             HHHHHHHh-ccCCeEE-ccC----------------CccceEEEEcC-----HHHHHHHHHhcCEEE-Eec------cc-
Confidence            88888888 4555432 112                12445555553     2566666655 7766 221      01 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                      -.++.+|||++...+++.++.+.++|++
T Consensus       326 ----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~  353 (359)
T 1svv_A          326 ----------------DGTCIMRLCTSWATEEKECHRFVEVLKR  353 (359)
T ss_dssp             ----------------TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ----------------CCCceEEEEccCcCCHHHHHHHHHHHHH
Confidence                            0246799999887777767777776654

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.64  E-value=5.6e-15  Score=145.30  Aligned_cols=247  Identities=11%  Similarity=0.080  Sum_probs=154.6

Q ss_pred             CcccCCCCchHHHHHHHH----HhHhCCC----eEEEcCcHHHHHHH-HHHhcC--------------CCCEEEEcCCCc
Q 019543           47 YDYTRSGNPTRDALESLL----AKLDKAD----RALCFTSGMAALAA-VTHLLG--------------TGEEIVAGDDLY  103 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~l----a~~~g~~----~~l~~~sG~~A~~~-il~ll~--------------~GD~Vi~~~~~y  103 (339)
                      +.|.  .+|...++|+.+    ++++|.+    ..+++++|++|+.. +..+..              |+++|++++..|
T Consensus       125 ~~~~--~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H  202 (511)
T 3vp6_A          125 FTYE--IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH  202 (511)
T ss_dssp             SCTT--TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred             CCcc--cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence            4454  678877777765    5556754    57788888999864 333322              678999988766


Q ss_pred             cchHHHHH---------------------------------------------------------HHHHHHHHHcCCEEE
Q 019543          104 GGTDRLLS---------------------------------------------------------RKIAEMAHAHGALLL  126 (339)
Q Consensus       104 ~~~~~~~~---------------------------------------------------------~~I~~la~~~g~~li  126 (339)
                      ........                                                         ++|+++|++||++++
T Consensus       203 ~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh  282 (511)
T 3vp6_A          203 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH  282 (511)
T ss_dssp             THHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence            54332211                                                         999999999999999


Q ss_pred             EeCCcCCCCCcCc-----cc--CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hhc-C------------
Q 019543          127 VDNSIMSPVLSRP-----LE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAE-G------------  185 (339)
Q Consensus       127 vD~a~a~g~~~~~-----~~--~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~~-~------------  185 (339)
                      +|++|+.+....+     +.  .++|+++++++|+++++.+  .|+++.+++.+........ .++ .            
T Consensus       283 vD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g--~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~  360 (511)
T 3vp6_A          283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTG  360 (511)
T ss_dssp             EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCG
T ss_pred             EEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC--eEEEEEeCHHHHHHHhccCCccccCcccccccccCcc
Confidence            9999988765221     11  2569999999999987633  4667776655544432110 000 0            


Q ss_pred             -------CCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEe--cCCCCCCCchHhHhhhcCCCcce
Q 019543          186 -------SGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN--YAGLPEHPGHELHYSQAKGAGSV  254 (339)
Q Consensus       186 -------~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~--~p~~~~~~~~~~~~~~~~~~~~i  254 (339)
                             .....+..+.+++  +.+.+++++++..++++++++.|++.|+++.+.  .|                 ..++
T Consensus       361 ~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p-----------------~~~~  423 (511)
T 3vp6_A          361 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-----------------EHTN  423 (511)
T ss_dssp             GGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC-----------------SSSC
T ss_pred             CCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-----------------CeEE
Confidence                   0112233333333  445678889999999999999999998876443  12                 3467


Q ss_pred             EEEeeCCH----------------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe
Q 019543          255 LSFLTGSL----------------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV  318 (339)
Q Consensus       255 vs~~~~~~----------------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv  318 (339)
                      +.|.+.+.                ....++.+.|...|+.+..       ..+..               -..+.+|+++
T Consensus       424 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-------~~~~~---------------~~~~~lRi~~  481 (511)
T 3vp6_A          424 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-------YQPQG---------------DKANFFRMVI  481 (511)
T ss_dssp             EEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-------EEEET---------------TEEEEEEECC
T ss_pred             EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-------EEEeC---------------CceEEEEEEe
Confidence            77764211                1123566666665543210       01100               0124699999


Q ss_pred             -ccCCHHHHHHHHHHHHhc
Q 019543          319 -GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       319 -g~e~~~~li~~l~~al~~  336 (339)
                       +...+++.|+.+.+++++
T Consensus       482 ~~~~~t~~di~~ll~~i~~  500 (511)
T 3vp6_A          482 SNPAATQSDIDFLIEEIER  500 (511)
T ss_dssp             CCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHH
Confidence             566677777888877764

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.63  E-value=6.5e-15  Score=140.67  Aligned_cols=234  Identities=16%  Similarity=0.205  Sum_probs=146.3

Q ss_pred             CCchHHHHHHHHHhHh-C-C-CeEEEcCcHHHHHHHHH----HhcCCCCEEEEcCCCccchH------------------
Q 019543           53 GNPTRDALESLLAKLD-K-A-DRALCFTSGMAALAAVT----HLLGTGEEIVAGDDLYGGTD------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g-~-~~~l~~~sG~~A~~~il----~ll~~GD~Vi~~~~~y~~~~------------------  107 (339)
                      ..+...+|++.+++++ | . +++++++||++|+.+++    .+.++| +|++.++.|++..                  
T Consensus        82 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~  160 (426)
T 1sff_A           82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  160 (426)
T ss_dssp             ECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             CCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccC
Confidence            4577899999999999 5 4 56788888999997543    356676 7777776553210                  


Q ss_pred             ----------------------------HHH------H------------------------HHHHHHHHHcCCEEEEeC
Q 019543          108 ----------------------------RLL------S------------------------RKIAEMAHAHGALLLVDN  129 (339)
Q Consensus       108 ----------------------------~~~------~------------------------~~I~~la~~~g~~livD~  129 (339)
                                                  ..+      .                        ++|.++|++||++||+|+
T Consensus       161 ~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De  240 (426)
T 1sff_A          161 LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE  240 (426)
T ss_dssp             CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence                                        011      1                        889999999999999999


Q ss_pred             CcC-CCCCcCc--c---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH
Q 019543          130 SIM-SPVLSRP--L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM  203 (339)
Q Consensus       130 a~a-~g~~~~~--~---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~  203 (339)
                      +|+ .+..+..  +   ....|++  ||||++++ | ...|++++++ ++++.+.......+...++...+.+...|+.+
T Consensus       241 ~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~  315 (426)
T 1sff_A          241 VQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVF  315 (426)
T ss_dssp             TTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHH
T ss_pred             hhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcH-HHHhhhccCCcCcCCCCCHHHHHHHHHHHHHH
Confidence            997 2221211  1   2234654  88999996 5 4457888775 56655542111223455777666665555544


Q ss_pred             HH--HHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--------CHHHHHHHH
Q 019543          204 AL--RVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVV  269 (339)
Q Consensus       204 ~~--r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--------~~~~~~~~~  269 (339)
                      ..  ..++..++.+++.+.|+.    ++.+..+                  .+.|.++++.+.        +.....++.
T Consensus       316 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~l~  377 (426)
T 1sff_A          316 EQENLLQKANDLGQKLKDGLLAIAEKHPEIGDV------------------RGLGAMIAIELFEDGDHNKPDAKLTAEIV  377 (426)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE------------------EEETTEEEEEEBGGGCTTSBCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChHHHHHHH
Confidence            32  345556667777776654    3322111                  124678888873        234456788


Q ss_pred             ccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          270 ETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       270 ~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +.|...|+.++.|..                         .++.+|||+++..+++.++.+.++|+
T Consensus       378 ~~l~~~gi~v~~~~~-------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~  418 (426)
T 1sff_A          378 ARARDKGLILLSCGP-------------------------YYNVLRILVPLTIEDAQIRQGLEIIS  418 (426)
T ss_dssp             HHHHHTTEECEEEST-------------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHCCcEEecCCC-------------------------CCCEEEEECCccCCHHHHHHHHHHHH
Confidence            877777887664431                         13679999986555555555555543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.63  E-value=7.3e-15  Score=139.47  Aligned_cols=235  Identities=12%  Similarity=0.043  Sum_probs=143.0

Q ss_pred             chHHHHHHHHHhHhCCC---eEEE-cCcHHHHHHHHH-HhcCCC-CEEEEcCCCccc----hHHHH--H-----------
Q 019543           55 PTRDALESLLAKLDKAD---RALC-FTSGMAALAAVT-HLLGTG-EEIVAGDDLYGG----TDRLL--S-----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~-~~sG~~A~~~il-~ll~~G-D~Vi~~~~~y~~----~~~~~--~-----------  111 (339)
                      +..+++++++++++|.+   ++++ ++||++|+.+++ ++++|| |.|  ....|..    .....  .           
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g  155 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHL--TYGEFSAKFASAVSKNPFVGEPIIITSDPG  155 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSCEEEE--ECSHHHHHHHHHHHHCTTSCCCEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCCeEEE--eCCHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence            35789999999999975   4555 688899998644 578888 554  3333311    01111  0           


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCce
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                                   ++|.++   +|+++++|++|+.+...-.+. ++|++++|+||+++++++  
T Consensus       156 ~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg--  229 (398)
T 2fyf_A          156 SAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG--  229 (398)
T ss_dssp             CCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS--
T ss_pred             CCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc--
Confidence                                         556555   899999999998765422222 479999999999997643  


Q ss_pred             EEEEEEcChhHHHHHHHHH----------------H----hcC-CCCChHHHHHHHhchhh------HHHHHHHHHHHHH
Q 019543          163 AGVLAVKGERLAKELYFLQ----------------N----AEG-SGLAPFDCWICLRGVKT------MALRVEKQQDNAQ  215 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~----------------~----~~~-~~~~~~~a~~~~~~l~~------~~~r~~~~~~~a~  215 (339)
                      .|++++++ ++++.++..+                .    ... .+.+....+.+..+++.      ++.+.++..++++
T Consensus       230 ~g~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~  308 (398)
T 2fyf_A          230 LWLAIMSP-AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ  308 (398)
T ss_dssp             EEEEEECH-HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             eEEEEECH-HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46777764 6666664321                0    011 12333322222223322      4556777788899


Q ss_pred             HHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcc-eEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccc
Q 019543          216 KIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGS-VLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       216 ~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~-ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      ++.+.|+++++++. ..+.    |         .+.++ +++|.+++.....++.+.|...|+.++.|.       .   
T Consensus       309 ~l~~~L~~~~g~~~-~~~~----~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~-------~---  364 (398)
T 2fyf_A          309 RLYSWAQERPYTTP-FVTD----P---------GLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPY-------R---  364 (398)
T ss_dssp             HHHHHHHHSTTEEE-SCCS----G---------GGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCC-------T---
T ss_pred             HHHHHHHHcCCcee-ccCC----h---------hhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCc-------c---
Confidence            99999998877642 1110    1         01234 888888532234567777766687776431       0   


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                         .          ..++.+|||++...+++.++.+.++|+
T Consensus       365 ---~----------~~~~~iRis~~~~~t~e~i~~~~~~l~  392 (398)
T 2fyf_A          365 ---K----------LGRNQLRVAMFPAVEPDDVSALTECVD  392 (398)
T ss_dssp             ---T----------TCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ---c----------CCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence               0          124789999996555555555555554

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.63  E-value=2.2e-15  Score=149.01  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=73.7

Q ss_pred             CeEEEcCcHHHHHHHHH-H-----hcCCCCEEEEcCCCccchHHHHH---------------------------------
Q 019543           71 DRALCFTSGMAALAAVT-H-----LLGTGEEIVAGDDLYGGTDRLLS---------------------------------  111 (339)
Q Consensus        71 ~~~l~~~sG~~A~~~il-~-----ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------  111 (339)
                      ++++++++|++|+..++ .     +++|||+|+++++.|.+....+.                                 
T Consensus       165 ~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~  244 (533)
T 3f6t_A          165 TDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPS  244 (533)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTT
T ss_pred             ceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCC
Confidence            46777777799997544 3     68999999999998765432111                                 


Q ss_pred             ----------------------HHHHHHHH-HcCCEEEEeCCcCCCCCc-Ccc---cCCCeEEEeccccccccCCCceEE
Q 019543          112 ----------------------RKIAEMAH-AHGALLLVDNSIMSPVLS-RPL---ELGADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 ----------------------~~I~~la~-~~g~~livD~a~a~g~~~-~~~---~~~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                            ++|+++|+ +||+++|+|++|+..... ..+   ..+.+++++||||++|.+|. ..|
T Consensus       245 ~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG  323 (533)
T 3f6t_A          245 IKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW-RLG  323 (533)
T ss_dssp             EEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG-CEE
T ss_pred             CeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc-ceE
Confidence                                  68999999 589999999999754331 111   12346999999999987664 456


Q ss_pred             EEEEcChhHHH
Q 019543          165 VLAVKGERLAK  175 (339)
Q Consensus       165 ~v~~~~~~l~~  175 (339)
                      +++++++.+.+
T Consensus       324 ~l~~~~~~~~~  334 (533)
T 3f6t_A          324 VIALNEKNVFD  334 (533)
T ss_dssp             EEEEESSCHHH
T ss_pred             EEEECcHHHHH
Confidence            88887653333

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.63  E-value=9.6e-16  Score=143.00  Aligned_cols=236  Identities=14%  Similarity=0.080  Sum_probs=146.0

Q ss_pred             chHHHHHHHHHhHhCCC---eEEEcCcH-HHHHHH-HHHhcCC---CCEEEEcCCCccchH-------------------
Q 019543           55 PTRDALESLLAKLDKAD---RALCFTSG-MAALAA-VTHLLGT---GEEIVAGDDLYGGTD-------------------  107 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~~~sG-~~A~~~-il~ll~~---GD~Vi~~~~~y~~~~-------------------  107 (339)
                      +..+++++.+++++|.+   ++++++++ ++|+.+ +..++.+   ||+|+++.+.|....                   
T Consensus        48 ~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  127 (360)
T 1w23_A           48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSY  127 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTS
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHHHHHHhCCeEEeecccccCc
Confidence            35789999999999975   45566666 889875 4456654   677776654332110                   


Q ss_pred             -------H-HHH-------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCC
Q 019543          108 -------R-LLS-------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       108 -------~-~~~-------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~  160 (339)
                             . .+.                   .   +|+++||++||+|++|+.+.....+. ..|++++|+||++++.| 
T Consensus       128 ~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~---~i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~sK~~~~~G-  202 (360)
T 1w23_A          128 QSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ---NFPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQKNLGPSG-  202 (360)
T ss_dssp             CSCCCGGGCCCCTTEEEEEEESEETTTTEECS---SCCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETTTTTSCTT-
T ss_pred             CCccchHhhccCCCCCEEEEeCCCCCcceecc---cccccCCceEEEechhhcCCCCcCcc-cCCEEEEEcccccCCCC-
Confidence                   0 010                   3   45558999999999998775422222 23899999999998543 


Q ss_pred             ceEEEEEEcChhHHHHHHHHH-----------HhcC-CCCChHHHHHHHhchhh------HHHHHHHHHHHHHHHHHHHh
Q 019543          161 VMAGVLAVKGERLAKELYFLQ-----------NAEG-SGLAPFDCWICLRGVKT------MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~~~~-----------~~~~-~~~~~~~a~~~~~~l~~------~~~r~~~~~~~a~~l~~~L~  222 (339)
                        .|++++++ +++++++...           .... .+.+....+.+..+++.      ++.+.++..++++++.+.|+
T Consensus       203 --~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~  279 (360)
T 1w23_A          203 --VTVVIVKK-DLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTID  279 (360)
T ss_dssp             --CEEEEEEH-HHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cEEEEEcH-HHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence              36777764 4544433211           0011 23333333333333332      45567777888999999999


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +++++... +.    .+.        ...+.+++|.+++.....+|.+.|...|+.+..|..                  
T Consensus       280 ~~~~~~~~-~~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~------------------  328 (360)
T 1w23_A          280 ESNGFYVG-HA----EKG--------SRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHR------------------  328 (360)
T ss_dssp             TTTTSSEE-SS----CGG--------GBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCT------------------
T ss_pred             HccCcccc-cC----Cch--------hccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCC------------------
Confidence            87653111 10    010        002348999887655567788888777877653321                  


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             .++.||||++..++++.++.+.++|++
T Consensus       329 -------~~~~iRis~~~~~~~~~i~~~~~~l~~  355 (360)
T 1w23_A          329 -------SVGGCRASIYNAVPIDACIALRELMIQ  355 (360)
T ss_dssp             -------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -------CCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence                   136799999987777777777777754

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.62  E-value=5.9e-15  Score=142.69  Aligned_cols=242  Identities=12%  Similarity=0.004  Sum_probs=145.7

Q ss_pred             HHHHHHHHhHhCCCe-------EEEcCcHHHHHHH-HHHhcC--------CC-----CEEEEcCCCccchHHHHH-----
Q 019543           58 DALESLLAKLDKADR-------ALCFTSGMAALAA-VTHLLG--------TG-----EEIVAGDDLYGGTDRLLS-----  111 (339)
Q Consensus        58 ~~le~~la~~~g~~~-------~l~~~sG~~A~~~-il~ll~--------~G-----D~Vi~~~~~y~~~~~~~~-----  111 (339)
                      +++.+.+++++|.+.       ++++++|++|+.. +.++..        +|     |+|++++ .|..+.....     
T Consensus        84 ~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~  162 (452)
T 2dgk_A           84 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVE  162 (452)
T ss_dssp             HHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCce
Confidence            344555688888752       7888899999875 434432        55     6999988 6654432221     


Q ss_pred             --------------------------------------------HHHHHHHHHc------CCEEEEeCCcCCCCC---cC
Q 019543          112 --------------------------------------------RKIAEMAHAH------GALLLVDNSIMSPVL---SR  138 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~------g~~livD~a~a~g~~---~~  138 (339)
                                                                  ++|.++|++|      |+++++|++|+.++.   ..
T Consensus       163 v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~  242 (452)
T 2dgk_A          163 LREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP  242 (452)
T ss_dssp             EEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred             EEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc
Confidence                                                        9999999996      999999999986542   11


Q ss_pred             c--c---cCCCeEEEeccccccccCCCceEEEEEEcChhHH-HHHHHHHHhcC----------CCC--ChHHHHHHHhc-
Q 019543          139 P--L---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAEG----------SGL--APFDCWICLRG-  199 (339)
Q Consensus       139 ~--~---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~-~~l~~~~~~~~----------~~~--~~~~a~~~~~~-  199 (339)
                      .  .   ..++|++++|++|++.++.  ..|+++++++.+. +.+.....+.+          ...  .....+.++.. 
T Consensus       243 ~~~~~~~~~~~d~~~~~~hK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l  320 (452)
T 2dgk_A          243 DIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL  320 (452)
T ss_dssp             TCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH
T ss_pred             cchhhcCCCCCcEEEECcccccCCCC--CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH
Confidence            1  1   1268999999999876543  3678888764332 22211001111          111  11222333332 


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH----HHHHHHHccCCc
Q 019543          200 -VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL----ALSKHVVETTKY  274 (339)
Q Consensus       200 -l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~----~~~~~~~~~L~~  274 (339)
                       .+.+.++.++..++++++.+.|+++++++.+. |..+            ....+++.|.+.+.    ....++.+.|..
T Consensus       321 g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~~~------------~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~  387 (452)
T 2dgk_A          321 GREGYTKVQNASYQVAAYLADEIAKLGPYEFIC-TGRP------------DEGIPAVCFKLKDGEDPGYTLYDLSERLRL  387 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEE-ECCT------------TTBSSEEEEEECTTCCCSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEec-CCCC------------CCCeEEEEEEecCcccccCCHHHHHHHHHh
Confidence             24467778888899999999999998876543 3210            01457888887542    123567777776


Q ss_pred             ceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          275 FSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       275 ~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      .|+.++.      ...|..     +         -....+|+|++..++++.++.+.++|+
T Consensus       388 ~Gi~v~~------~~~~~~-----~---------~~~~~lRis~~~~~t~e~id~li~~l~  428 (452)
T 2dgk_A          388 RGWQVPA------FTLGGE-----A---------TDIVVMRIMCRRGFEMDFAELLLEDYK  428 (452)
T ss_dssp             TTCBCCE------EECSTT-----C---------TTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCeeee------eeCCcc-----c---------CCeEEEEEEecCCCCHHHHHHHHHHHH
Confidence            6765542      111211     0         024589999997555544555444443

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.62  E-value=6.3e-15  Score=143.53  Aligned_cols=237  Identities=15%  Similarity=0.111  Sum_probs=149.3

Q ss_pred             ccCCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hcC--------CCCEEEEcCCCccch-----------
Q 019543           49 YTRSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LLG--------TGEEIVAGDDLYGGT-----------  106 (339)
Q Consensus        49 y~r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll~--------~GD~Vi~~~~~y~~~-----------  106 (339)
                      +.++.++...+|+++|+++.+  .+.+++++||++|+..++. +..        +++.||+.++.|++.           
T Consensus        93 ~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~  172 (472)
T 3hmu_A           93 FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMA  172 (472)
T ss_dssp             SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCH
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCCh
Confidence            334567888999999999985  4588999999999985443 332        468888877766531           


Q ss_pred             ------------------------------------HH----HHH-----------------------------HHHHHH
Q 019543          107 ------------------------------------DR----LLS-----------------------------RKIAEM  117 (339)
Q Consensus       107 ------------------------------------~~----~~~-----------------------------~~I~~l  117 (339)
                                                          ..    .+.                             ++|.++
T Consensus       173 ~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l  252 (472)
T 3hmu_A          173 GMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRI  252 (472)
T ss_dssp             HHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHH
T ss_pred             hhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHH
Confidence                                                01    110                             899999


Q ss_pred             HHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH--HHhcCCCCC
Q 019543          118 AHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--QNAEGSGLA  189 (339)
Q Consensus       118 a~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~~~~~~~~~  189 (339)
                      |++||++||+||+|. .|..+..     .....|++  +++|+++|.+..+ |++++++ ++++.+...  ....+...+
T Consensus       253 ~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~--t~sK~l~gg~~pl-G~v~~~~-~i~~~~~~~~~~~~~t~~~n  328 (472)
T 3hmu_A          253 CDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIM--TIAKGLSSGYAPI-GGSIVCD-EVAHVIGKDEFNHGYTYSGH  328 (472)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTSSCC-EEEEEEH-HHHHHHTTSCBCCCCTTTTC
T ss_pred             HHHcCCEEEEEccccCCcccCccchhHHhCCCCcee--eechhhhcCCcce-EEEEECH-HHHHhcccCCccccCCCCCC
Confidence            999999999999995 4333221     12235776  4789998743344 5666664 677766211  111235567


Q ss_pred             hHHHHHHHhchhhHH--HHHHHHH-HHHHHHHHHHhCC---CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--
Q 019543          190 PFDCWICLRGVKTMA--LRVEKQQ-DNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--  261 (339)
Q Consensus       190 ~~~a~~~~~~l~~~~--~r~~~~~-~~a~~l~~~L~~~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--  261 (339)
                      |+.++.++..|+.+.  ...++.+ ++.+++.+.|+.+   +.+..+                  ++.|.++.|.+..  
T Consensus       329 p~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------r~~G~~~~i~~~~~~  390 (472)
T 3hmu_A          329 PVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEA------------------KIVGMMASIALTPNK  390 (472)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEE------------------EEETTEEEEEECSCG
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecCceEEEEEecCc
Confidence            887777777776542  3455566 6677777777654   333222                  2356788887642  


Q ss_pred             ----------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHH
Q 019543          262 ----------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLD  331 (339)
Q Consensus       262 ----------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~  331 (339)
                                ...+.++.+.|.+.|+.++.+                           . +.|||++.+..+++.++.+.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g-~~iRi~p~~~~t~e~i~~~l  442 (472)
T 3hmu_A          391 ASRAKFASEPGTIGYICRERCFANNLIMRHV---------------------------G-DRMIISPPLVITPAEIDEMF  442 (472)
T ss_dssp             GGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE---------------------------T-TEEEECCCTTCCHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHCCcEEEec---------------------------C-CEEEEECCCCCCHHHHHHHH
Confidence                      122556777776666644311                           1 67999977655555555554


Q ss_pred             HHHh
Q 019543          332 KALR  335 (339)
Q Consensus       332 ~al~  335 (339)
                      ++|+
T Consensus       443 ~~l~  446 (472)
T 3hmu_A          443 VRIR  446 (472)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.62  E-value=1.4e-14  Score=138.87  Aligned_cols=238  Identities=16%  Similarity=0.149  Sum_probs=149.4

Q ss_pred             CCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccch--------------------
Q 019543           52 SGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGT--------------------  106 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~--------------------  106 (339)
                      +.++...+|+++++++++  .+.+++++||++|+..++. +.  ..+|+|++.++.|++.                    
T Consensus        82 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  161 (433)
T 1zod_A           82 MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA  161 (433)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCC
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCC
Confidence            345678999999999996  4678889999999986543 22  3468899888776420                    


Q ss_pred             ---------------------------HH----HH-----H------------------------HHHHHHHHHcCCEEE
Q 019543          107 ---------------------------DR----LL-----S------------------------RKIAEMAHAHGALLL  126 (339)
Q Consensus       107 ---------------------------~~----~~-----~------------------------~~I~~la~~~g~~li  126 (339)
                                                 ..    .+     .                        ++|.++|++||++||
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li  241 (433)
T 1zod_A          162 VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI  241 (433)
T ss_dssp             TTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEE
T ss_pred             CCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEE
Confidence                                       11    11     1                        899999999999999


Q ss_pred             EeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--cCCCCChHHHHHHHh
Q 019543          127 VDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--EGSGLAPFDCWICLR  198 (339)
Q Consensus       127 vD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~~~~~~~~~a~~~~~  198 (339)
                      +||+|+ .+..+..     .....|+  .|+||++++ | ...|++++++ ++++.+......  .+...+++..+++..
T Consensus       242 ~DEv~~~~g~~g~~~~~~~~~~~~di--~s~sK~~~~-G-~~ig~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~a~~a  316 (433)
T 1zod_A          242 LDEAQTGVGRTGTMFACQRDGVTPDI--LTLSKTLGA-G-LPLAAIVTSA-AIEERAHELGYLFYTTHVSDPLPAAVGLR  316 (433)
T ss_dssp             EECTTTTTTTTSSSSTHHHHTCCCSE--EEECHHHHT-T-SSCEEEEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHHHH
T ss_pred             EeccccCCCcCchHhHHhhcCCCCCE--EEecccccC-C-CCeeEEEEhH-HHHHhhccCCCCCCCCCCcCHHHHHHHHH
Confidence            999997 4332221     1223465  478999996 4 4457887764 677766542111  234456776665555


Q ss_pred             chhhHH--HHHHHHHHHHHHHHHHHhC----CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--------HHH
Q 019543          199 GVKTMA--LRVEKQQDNAQKIAEFLAS----HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--------LAL  264 (339)
Q Consensus       199 ~l~~~~--~r~~~~~~~a~~l~~~L~~----~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--------~~~  264 (339)
                      .++.+.  ...++.+++.+++.+.|++    ++.+..+                  .+.|.+++|.+.+        ...
T Consensus       317 al~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~  378 (433)
T 1zod_A          317 VLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKEPADGL  378 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECTTH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChHH
Confidence            555432  2345556666777776654    2332211                  1246788887632        123


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      ..+|.+.|...|+.++.|..+                      + .++.+||++.+..+++.++.+.++|+
T Consensus       379 ~~~~~~~l~~~Gv~v~~~~~~----------------------~-~~~~lRi~~~~~~t~~~i~~~l~~l~  426 (433)
T 1zod_A          379 GAKITRECMNLGLSMNIVQLP----------------------G-MGGVFRIAPPLTVSEDEIDLGLSLLG  426 (433)
T ss_dssp             HHHHHHHHHHTTEECCEECCT----------------------T-SCCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCeEeccCCC----------------------C-CCCEEEEECCcCCCHHHHHHHHHHHH
Confidence            566777776778776644310                      1 23789999877666665555555554

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.62  E-value=8.6e-15  Score=142.70  Aligned_cols=234  Identities=19%  Similarity=0.178  Sum_probs=149.1

Q ss_pred             CCCCchHHHHHHHHHhHhC--CCeEEEcCcHHHHHHHHHH-hc--------CCCCEEEEcCCCccch-------------
Q 019543           51 RSGNPTRDALESLLAKLDK--ADRALCFTSGMAALAAVTH-LL--------GTGEEIVAGDDLYGGT-------------  106 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g--~~~~l~~~sG~~A~~~il~-ll--------~~GD~Vi~~~~~y~~~-------------  106 (339)
                      .+.++...+|+++|+++++  .+.+++++||++|+..++. +.        ..++.||+.++.|++.             
T Consensus        93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~  172 (476)
T 3i5t_A           93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN  172 (476)
T ss_dssp             TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred             ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence            4567889999999999984  5789999999999985444 32        3367888777665421             


Q ss_pred             ----------------------------------H----HHHH-----------------------------HHHHHHHH
Q 019543          107 ----------------------------------D----RLLS-----------------------------RKIAEMAH  119 (339)
Q Consensus       107 ----------------------------------~----~~~~-----------------------------~~I~~la~  119 (339)
                                                        .    ..+.                             ++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~  252 (476)
T 3i5t_A          173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE  252 (476)
T ss_dssp             CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence                                              1    1111                             89999999


Q ss_pred             HcCCEEEEeCCcC-CCCCcCc------ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-------HhcC
Q 019543          120 AHGALLLVDNSIM-SPVLSRP------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEG  185 (339)
Q Consensus       120 ~~g~~livD~a~a-~g~~~~~------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~  185 (339)
                      +||++||+||+|. .|..+..      .....|++  +++|++++ |-...|+++++ +++++.+....       ...+
T Consensus       253 ~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~--t~sK~l~~-G~~plg~v~~~-~~i~~~~~~~~~~~~~~~~~~t  328 (476)
T 3i5t_A          253 KHDILYISDEVVTGFGRCGEWFASEKVFGVVPDII--TFAKGVTS-GYVPLGGLAIS-EAVLARISGENAKGSWFTNGYT  328 (476)
T ss_dssp             HTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEE--EECGGGGT-TSSCCEEEEEC-HHHHHTTSGGGCTTCEECCCCT
T ss_pred             HcCCEEEEEecccCCccccCceeeecccCCCcchh--hhhhhhcC-CCcCeEEEEEC-HHHHHHHhcCCcccccccccCC
Confidence            9999999999995 3332221      12234766  57899986 31234567676 46776665421       1134


Q ss_pred             CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCCC---CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC
Q 019543          186 SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASHP---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG  260 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~~---~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~  260 (339)
                      ...+|+.+++++..|+.+.  ...++.+++.+++.+.|+.+.   .+..+                  ++.|.++.|.+.
T Consensus       329 ~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------------~~~G~~~~i~~~  390 (476)
T 3i5t_A          329 YSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAET------------------RSVGLVGCVQCL  390 (476)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEE------------------EEETTEEEEEEC
T ss_pred             CCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EecCceeEEEEe
Confidence            5667887777777776543  346667777888888887543   22211                  235678888764


Q ss_pred             CH-----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHH
Q 019543          261 SL-----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISD  329 (339)
Q Consensus       261 ~~-----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~  329 (339)
                      +.           ..+.++++.|.+.|+.+.          |.                 . +.|||++.+..+++.++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----------~~-----------------g-~~iRi~p~l~~t~e~i~~  442 (476)
T 3i5t_A          391 LDPTRADGTAEDKAFTLKIDERCFELGLIVR----------PL-----------------G-DLCVISPPLIISRAQIDE  442 (476)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHTTEECE----------EE-----------------T-TEEEECCCTTCCHHHHHH
T ss_pred             cCccccccccchhHHHHHHHHHHHHCCCEEE----------ec-----------------C-CEEEEECCCCCCHHHHHH
Confidence            32           125567777766666543          10                 1 679999766555554444


Q ss_pred             HHHHH
Q 019543          330 LDKAL  334 (339)
Q Consensus       330 l~~al  334 (339)
                      +.++|
T Consensus       443 ~l~~l  447 (476)
T 3i5t_A          443 MVAIM  447 (476)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.62  E-value=1.3e-14  Score=142.05  Aligned_cols=241  Identities=12%  Similarity=0.099  Sum_probs=144.1

Q ss_pred             CCchHHHHHHH----HHhHhCC---CeEEEcCcHHHHHHHH-HH----hc---------CC------CC-EEEEcCCCcc
Q 019543           53 GNPTRDALESL----LAKLDKA---DRALCFTSGMAALAAV-TH----LL---------GT------GE-EIVAGDDLYG  104 (339)
Q Consensus        53 ~~~~~~~le~~----la~~~g~---~~~l~~~sG~~A~~~i-l~----ll---------~~------GD-~Vi~~~~~y~  104 (339)
                      ..|...++|+.    +++++|.   +.+++++||++|+..+ ..    ++         ++      || +|++++..|.
T Consensus       134 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~  213 (497)
T 2qma_A          134 QASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHF  213 (497)
T ss_dssp             GCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCT
T ss_pred             hChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchH
Confidence            45677777776    8889986   4678888899998743 32    12         13      46 7888776543


Q ss_pred             chHHH------------------------------HH---------------------------HHHHHHHHHcCCEEEE
Q 019543          105 GTDRL------------------------------LS---------------------------RKIAEMAHAHGALLLV  127 (339)
Q Consensus       105 ~~~~~------------------------------~~---------------------------~~I~~la~~~g~~liv  127 (339)
                      .....                              +.                           ++|.++|++||+++++
T Consensus       214 s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~v  293 (497)
T 2qma_A          214 TVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHV  293 (497)
T ss_dssp             HHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence            32211                              10                           9999999999999999


Q ss_pred             eCCcCCCCCcCc----c-cC-CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-C----------CC---
Q 019543          128 DNSIMSPVLSRP----L-EL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G----------SG---  187 (339)
Q Consensus       128 D~a~a~g~~~~~----~-~~-~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~----------~~---  187 (339)
                      |++|+.+.....    + .. ++|+++.|+||+++++.  ..|+++++++...+.+.....+. +          ..   
T Consensus       294 D~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~--~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~  371 (497)
T 2qma_A          294 DGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI--SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIAT  371 (497)
T ss_dssp             EETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS--SCEEEEESCGGGGGGGCC--------------------CC
T ss_pred             ehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc--ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCC
Confidence            999987654222    1 22 67999999999998764  34677776654333221111010 0          00   


Q ss_pred             ---CChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH
Q 019543          188 ---LAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL  262 (339)
Q Consensus       188 ---~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~  262 (339)
                         ...+..+.+++  +.+.+..+.++..++++++.+.|++.++++.+..|                 .+++++|.+.+.
T Consensus       372 ~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~~v~f~~~~~  434 (497)
T 2qma_A          372 TKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-----------------SLSTVLFRATHE  434 (497)
T ss_dssp             SCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-----------------SSSEEEEEECCS
T ss_pred             CCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-----------------CceEEEEEEcCC
Confidence               01122233333  23446677788889999999999998876543222                 356899987432


Q ss_pred             -----HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe-ccCCHHHHHHHHHHHHh
Q 019543          263 -----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV-GIEDVNDLISDLDKALR  335 (339)
Q Consensus       263 -----~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~e~~~~li~~l~~al~  335 (339)
                           ....++.+.|...|+.+..+         ...              -..+.+|+|+ +...+++.++.+.++|+
T Consensus       435 ~~~~~~l~~~l~~~l~~~G~~~~~~---------~~~--------------~g~~~lRis~~~~~~t~edi~~~~~~l~  490 (497)
T 2qma_A          435 TADLDELNKALRLEALTRGIAVLGE---------TIV--------------DGKTALKFTILNPCLTTSDFESLLSKIN  490 (497)
T ss_dssp             SSCHHHHHHHHHHHHHHHTSCBCEE---------EEE--------------TTEEEEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEe---------eEE--------------CCEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence                 11335555565555543210         000              0235799998 55555555555555544

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.62  E-value=2.5e-14  Score=135.18  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhHhC--------CC--eEEEcCcHHHHHHHH---HHhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLDK--------AD--RALCFTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~--~~l~~~sG~~A~~~i---l~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..++++.++++++        .+  ++++++||++|+..+   +++++|||+|+++.+.|.+....++            
T Consensus        72 ~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~  151 (397)
T 3fsl_A           72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWY  151 (397)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCE
T ss_pred             hHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeee
Confidence            4566666666653        34  567777889999754   3468999999999998876543322            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---C--cc--
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---R--PL--  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~---~--~~--  140 (339)
                                                                  ++|+++|++||+++|+|++|+.....   .  .+  
T Consensus       152 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  231 (397)
T 3fsl_A          152 DEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRA  231 (397)
T ss_dssp             ETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHH
T ss_pred             eccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHH
Confidence                                                        68999999999999999999765442   1  11  


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEE--cChhHHHHHHH-HHH---hcCCCCChHHHHHH---Hhc-------hh
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELYF-LQN---AEGSGLAPFDCWIC---LRG-------VK  201 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~~-~~~---~~~~~~~~~~a~~~---~~~-------l~  201 (339)
                         .....+++.|+||.++.+|.. .|++++  .+.++++.+.. ...   ......+......+   +..       .+
T Consensus       232 ~~~~~~~~i~~~S~SK~~~~~G~r-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  310 (397)
T 3fsl_A          232 IASAGLPALVSNSFSKIFSLYGER-VGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLK  310 (397)
T ss_dssp             HHHTTCCEEEEEECTTTTTCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHhcCCCEEEEecccccccCcCCC-eeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence               123468999999999866644 456653  34445544432 221   11222233332222   221       22


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          202 TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      .++.+.++..++.+++.+.|++++
T Consensus       311 ~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          311 EVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            345566677788888888888753

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.61  E-value=1.6e-15  Score=147.78  Aligned_cols=241  Identities=15%  Similarity=0.135  Sum_probs=147.1

Q ss_pred             chHHHHHHHHHhHhCCCeEEEc-CcHHHHHHH-HHH----hcCCCC-----EEEEcCCCccchHHHHH------------
Q 019543           55 PTRDALESLLAKLDKADRALCF-TSGMAALAA-VTH----LLGTGE-----EIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~-~sG~~A~~~-il~----ll~~GD-----~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ...+++++++++++|.+.++++ ++|++|+.+ ++.    +.++||     +|+++++.|+.+...+.            
T Consensus       107 ~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~  186 (474)
T 1wyu_B          107 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG  186 (474)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC
Confidence            3578899999999998876645 677888864 322    246898     99999987765543322            


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC--cCcccCCCeEEEecccc
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL--SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~--~~~~~~~~Di~~~S~sK  153 (339)
                                                          ++|+++|++||+++++|++|+.+..  .++...++|++++|+||
T Consensus       187 ~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K  266 (474)
T 1wyu_B          187 PEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHK  266 (474)
T ss_dssp             TTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTT
T ss_pred             CCCCcCHHHHHHhhCCCceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCcc
Confidence                                                8999999999999999999976543  22334578999999999


Q ss_pred             ccccC-C--CceEEEEEEcChhHHHHHHH-H------------------HHhcCCCCChHHHHHHHhch-----hhHHHH
Q 019543          154 FIAGH-S--DVMAGVLAVKGERLAKELYF-L------------------QNAEGSGLAPFDCWICLRGV-----KTMALR  206 (339)
Q Consensus       154 ~l~g~-~--~~~gG~v~~~~~~l~~~l~~-~------------------~~~~~~~~~~~~a~~~~~~l-----~~~~~r  206 (339)
                      +++++ |  +...|++++++ ++++.+.. .                  ++......++..+..+...+     +.+.+.
T Consensus       267 ~~~~p~g~gG~~~G~~~~~~-~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~  345 (474)
T 1wyu_B          267 TFTVPHGGGGPGSGPVGVKA-HLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKA  345 (474)
T ss_dssp             TTCCCCTTSCCCCCCEEECG-GGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCCeEEEEEcH-HHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99865 2  23467888876 55554431 0                  00011123343333333333     335555


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .++..++++++.+.|++. +++. .++.    +           ....+.+.+.......++.+.|...|+.+. +.   
T Consensus       346 ~~~~~~~~~~l~~~L~~~-g~~~-~~~~----~-----------~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~-~~---  404 (474)
T 1wyu_B          346 AALAVLNARYLKELLKEK-GYRV-PYDG----P-----------SMHEFVAQPPEGFRALDLAKGLLELGFHPP-TV---  404 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCBC-SSCS----S-----------CCSCEEEBCSTTCCHHHHHHHHHHTTCCCC-EE---
T ss_pred             HHHHHHHHHHHHHHHhhc-CcEe-cCCC----C-----------cceEEEEEcCCCCCHHHHHHHHHHCCcccc-cc---
Confidence            777788899999999876 5432 1111    0           111123333211234566776655566431 10   


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                        ..|.                ..++.+|||++..++++.++.+.++|+
T Consensus       405 --~~~~----------------~~~~~lRis~~~~~t~e~id~~~~~L~  435 (474)
T 1wyu_B          405 --YFPL----------------IVKEALMVEPTETEAKETLEAFAEAMG  435 (474)
T ss_dssp             --SCST----------------TSTTCEEECCCTTSCHHHHHHHHHHHH
T ss_pred             --cccc----------------ccCCEEEEEeecCCCHHHHHHHHHHHH
Confidence              0110                124679999997655555566655554

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.61  E-value=3.8e-14  Score=134.87  Aligned_cols=170  Identities=11%  Similarity=0.063  Sum_probs=110.6

Q ss_pred             chHHHHHHHHHhHh-C-------CCeEEE--cCcHHHHHHHH---HHhcCCC-----CEEEEcCCCccchHHHHH-----
Q 019543           55 PTRDALESLLAKLD-K-------ADRALC--FTSGMAALAAV---THLLGTG-----EEIVAGDDLYGGTDRLLS-----  111 (339)
Q Consensus        55 ~~~~~le~~la~~~-g-------~~~~l~--~~sG~~A~~~i---l~ll~~G-----D~Vi~~~~~y~~~~~~~~-----  111 (339)
                      +...+|++.+++++ +       .+++++  ++||++|+.++   +.+++||     |+|+++.+.|++....+.     
T Consensus        74 ~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~  153 (412)
T 1ajs_A           74 LGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFK  153 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCc
Confidence            44678999999887 4       257878  88889999754   2457899     999999887765431110     


Q ss_pred             ----------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--
Q 019543          112 ----------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--  137 (339)
Q Consensus       112 ----------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--  137 (339)
                                                                          ++|+++|++||+++|+|++|......  
T Consensus       154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~  233 (412)
T 1ajs_A          154 DIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNL  233 (412)
T ss_dssp             CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCH
T ss_pred             eeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcc
Confidence                                                                68999999999999999998643322  


Q ss_pred             --C--ccc----C-CCeEEEeccccccccCCCceEEEEEE--cChh----HHHHHHHHHHhcCCCCChHHHHHHHhchh-
Q 019543          138 --R--PLE----L-GADIVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYFLQNAEGSGLAPFDCWICLRGVK-  201 (339)
Q Consensus       138 --~--~~~----~-~~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~----l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-  201 (339)
                        .  ++.    . ..++++.|+||.++++|. ..|++++  ++++    +.+.+...........++...+++...|+ 
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  312 (412)
T 1ajs_A          234 EKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD  312 (412)
T ss_dssp             HHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS
T ss_pred             cccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcC
Confidence              1  111    1 124889999999997664 4567777  2344    33334332322223335554444443333 


Q ss_pred             ---------hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          202 ---------TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       202 ---------~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                               .++...++..++.+++.+.|++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          313 PELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                     234456666777888888888753

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.61  E-value=2.9e-14  Score=135.77  Aligned_cols=170  Identities=14%  Similarity=0.118  Sum_probs=111.4

Q ss_pred             chHHHHHHHHHhHh-C-------CCeEEE--cCcHHHHHHHH---HHhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           55 PTRDALESLLAKLD-K-------ADRALC--FTSGMAALAAV---THLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~-g-------~~~~l~--~~sG~~A~~~i---l~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      +...+|++.+++++ +       .+++++  +++|++|+.++   +.++.|||+|+++++.|.+....++          
T Consensus        73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~  152 (412)
T 1yaa_A           73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYP  152 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEE
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEe
Confidence            34667888888876 3       356777  88889998754   4466899999999988876543222          


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC------c
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR------P  139 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~------~  139 (339)
                                                                    ++|+++|++||+++|+|++|+......      +
T Consensus       153 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  232 (412)
T 1yaa_A          153 YWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYA  232 (412)
T ss_dssp             CEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred             eecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHH
Confidence                                                          689999999999999999996433221      1


Q ss_pred             c----cCC----CeEEEeccccccccCCCceEEEEE--E----cChh----HHHHHHHHHHhcCCCCChHHHHHHHhchh
Q 019543          140 L----ELG----ADIVMHSATKFIAGHSDVMAGVLA--V----KGER----LAKELYFLQNAEGSGLAPFDCWICLRGVK  201 (339)
Q Consensus       140 ~----~~~----~Di~~~S~sK~l~g~~~~~gG~v~--~----~~~~----l~~~l~~~~~~~~~~~~~~~a~~~~~~l~  201 (339)
                      +    ..+    .+++++|+||.++++|. ..|+++  +    ++++    +.+.+...........++...+++...|+
T Consensus       233 ~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~  311 (412)
T 1yaa_A          233 VRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLE  311 (412)
T ss_dssp             HHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhC
Confidence            1    122    36889999999986564 456776  6    1344    55666554333233335544433333332


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          202 ----------TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       202 ----------~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                                .++...++..++.+++.+.|++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          312 TPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                      234455666677888888887653

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.61  E-value=3.9e-15  Score=144.34  Aligned_cols=241  Identities=11%  Similarity=0.052  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHhHhCCCe-EEEcCcHH-HHHHH-HHHhcC--CCCEEEEcCCCccchH-----------------------
Q 019543           56 TRDALESLLAKLDKADR-ALCFTSGM-AALAA-VTHLLG--TGEEIVAGDDLYGGTD-----------------------  107 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~-~l~~~sG~-~A~~~-il~ll~--~GD~Vi~~~~~y~~~~-----------------------  107 (339)
                      ..+++++++++++|.+. ++++++|+ +++.+ ++.+..  +||+|+++++.|....                       
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~  213 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY  213 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEE
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCC
Confidence            45678899999999874 56677778 56653 333322  7888888776554322                       


Q ss_pred             -------HHH-------H-------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-Cc-----ccCCCeEEE
Q 019543          108 -------RLL-------S-------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RP-----LELGADIVM  148 (339)
Q Consensus       108 -------~~~-------~-------------------~~I~~la~~~g~~livD~a~a~g~~~-~~-----~~~~~Di~~  148 (339)
                             ..+       +                   ++|.++|++||+++++|+||+....+ .+     +..++|+++
T Consensus       214 ~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~  293 (456)
T 2z67_A          214 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV  293 (456)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEE
T ss_pred             cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEE
Confidence                   112       1                   99999999999999999999755431 11     111789999


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC-Ch-HHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL-AP-FDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~-~~-~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      +|++|+++++  ..+|+++++++++.+.+..  .+.|... ++ ...+.++..+  +.++++.++..++++++.+.|+++
T Consensus       294 ~s~hK~~~~p--~g~G~l~~~~~~~~~~l~~--~~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  369 (456)
T 2z67_A          294 SSSDKNLLTP--IGGGLVYSTDAEFIKEISL--SYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  369 (456)
T ss_dssp             EEHHHHHCCC--SSCEEEEESCHHHHHHHHT--TSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCcCCC--CCeEEEEEcCHHHHhhcCc--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998755  3468888866566665521  1233321 22 2222233322  345667778888899999999877


Q ss_pred             C---CceEEecCCCCCCCchHhHhhhcCCCcceEEEee--CCHHHHHHHHccCCccee-ecccC---Ccccceecccccc
Q 019543          225 P---RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--GSLALSKHVVETTKYFSI-TVSFG---SVKSLISMPCFMS  295 (339)
Q Consensus       225 ~---~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~--~~~~~~~~~~~~L~~~~i-~v~~G---~~~s~~~~p~~~~  295 (339)
                      +   ++. +..|                 . ++++|.+  .+.  ..++.+.|...++ +++..   +.+. ..++..  
T Consensus       370 ~~~~g~~-v~~~-----------------~-~~v~~~~~~~~~--~~~l~~~L~~~gi~~~rv~~~~g~f~-G~~~~~--  425 (456)
T 2z67_A          370 SKKTGGK-FLDV-----------------E-SPIASCISVNSD--PVEIAAKLYNLRVTGPRGIKKTDHFG-NCYLGT--  425 (456)
T ss_dssp             HHHSSCC-BCCC-----------------C-CSSEEEEECSSC--HHHHHHHHHHTTEESCEEECTTCHHH-HTCSSC--
T ss_pred             ccccCCE-ecCC-----------------C-CeEEEEEecccH--HHHHHHHHHHcCCCcceEEeecCccc-cccccc--
Confidence            4   432 2111                 2 4666766  432  2345555544443 11110   0000 011111  


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                   ...+.+|+|++..++++.++.+.++|+++
T Consensus       426 -------------~~~~~vr~s~~~~~t~eeid~~l~~L~~~  454 (456)
T 2z67_A          426 -------------YTHDYIVMNAAIGVRTEDIVNSVSKLEKI  454 (456)
T ss_dssp             -------------CSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             -------------cCcchhhhhhhcCCCHHHHHHHHHHHHHH
Confidence                         12468999999998888899999999864

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.61  E-value=1e-14  Score=141.12  Aligned_cols=250  Identities=14%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCC-----C----CEEEEcCCCcc------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGT-----G----EEIVAGDDLYG------------------  104 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~-----G----D~Vi~~~~~y~------------------  104 (339)
                      .++...+||+++++++|.+++++++||++|+.+ +..+.++     |    |+|+++.+.|.                  
T Consensus        72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~  151 (467)
T 2oqx_A           72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI  151 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBC
T ss_pred             cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccc
Confidence            456788999999999999999999999999875 4446677     8    99887632210                  


Q ss_pred             -------------c--hH----HHH------H-----------------------HHHHHHHHHcCCEEEEeCCcCC---
Q 019543          105 -------------G--TD----RLL------S-----------------------RKIAEMAHAHGALLLVDNSIMS---  133 (339)
Q Consensus       105 -------------~--~~----~~~------~-----------------------~~I~~la~~~g~~livD~a~a~---  133 (339)
                                   +  ..    ..+      +                       ++|+++|++||++||+|++|+.   
T Consensus       152 ~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~  231 (467)
T 2oqx_A          152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENA  231 (467)
T ss_dssp             TTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHH
T ss_pred             cccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhh
Confidence                         0  00    111      1                       7899999999999999988755   


Q ss_pred             --------CCCcCc---cc----CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---hcC-----CCCCh
Q 019543          134 --------PVLSRP---LE----LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEG-----SGLAP  190 (339)
Q Consensus       134 --------g~~~~~---~~----~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---~~~-----~~~~~  190 (339)
                              +..+..   +.    ..+|++++|+||+++++   .||+++++++.+++.+..++.   ..+     ...+.
T Consensus       232 ~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (467)
T 2oqx_A          232 YFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG  308 (467)
T ss_dssp             HHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCH
T ss_pred             hhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCcccccchhh
Confidence                    222211   11    24788899999999853   468888876413333333222   111     11222


Q ss_pred             HHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC----C--H
Q 019543          191 FDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG----S--L  262 (339)
Q Consensus       191 ~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~----~--~  262 (339)
                      ...+.+..+++..  +.++++..++++++.+.|++. ++..+  |.                .+.++++.+.    +  .
T Consensus       309 ~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~----------------~~~~~~~~~~~~~~~~~~  369 (467)
T 2oqx_A          309 GAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ--QA----------------GGHAAFVDAGKLLPHIPA  369 (467)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE--EE----------------CSSCEEEEHHHHSTTSCG
T ss_pred             hHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee--cC----------------CceEEEEechhhcccCCc
Confidence            1111111222222  234556677888999999876 55433  31                2456677652    1  1


Q ss_pred             HH--HHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC-CHHHHHHHHHHHH
Q 019543          263 AL--SKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE-DVNDLISDLDKAL  334 (339)
Q Consensus       263 ~~--~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e-~~~~li~~l~~al  334 (339)
                      ..  ..++++.| ...|+.++.|+.+..-..|..  ....        ....+.||||++.. .+++.++.+.++|
T Consensus       370 ~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~--g~~~--------~~~~~~iRl~~~~~~~t~e~i~~~~~~l  435 (467)
T 2oqx_A          370 DQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT--GKQL--------PCPAELLRLTIPRATYTQTHMDFIIEAF  435 (467)
T ss_dssp             GGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT--CSBC--------CCSCCEEEECCCTTTSCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhcCceecccccccccccccc--cccc--------cCccCeEEEEecCCCCCHHHHHHHHHHH
Confidence            11  44567777 777888875432110000100  0000        01247899999976 5555444444444

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.61  E-value=2.2e-14  Score=139.78  Aligned_cols=206  Identities=13%  Similarity=0.143  Sum_probs=131.4

Q ss_pred             CCchHHHHHHHH----HhHhCCC-----------eEEEcCcHHHHHHH-HHHh-------------------cCCCCEEE
Q 019543           53 GNPTRDALESLL----AKLDKAD-----------RALCFTSGMAALAA-VTHL-------------------LGTGEEIV   97 (339)
Q Consensus        53 ~~~~~~~le~~l----a~~~g~~-----------~~l~~~sG~~A~~~-il~l-------------------l~~GD~Vi   97 (339)
                      .+|...+||+++    ++++|.+           ..+++++|++||.. ++..                   +.|+++|+
T Consensus       107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi  186 (475)
T 3k40_A          107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY  186 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence            678888899865    6667765           47888999999863 3322                   12457899


Q ss_pred             EcCCCccchHHHHH-----------------------------------------------------HHHHHHHHHcCCE
Q 019543           98 AGDDLYGGTDRLLS-----------------------------------------------------RKIAEMAHAHGAL  124 (339)
Q Consensus        98 ~~~~~y~~~~~~~~-----------------------------------------------------~~I~~la~~~g~~  124 (339)
                      ++...+..+.....                                                     ++|+++|++||++
T Consensus       187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~  266 (475)
T 3k40_A          187 CSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLW  266 (475)
T ss_dssp             EETTSCHHHHHHHHHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCE
T ss_pred             ECCCchHHHHHHHHHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCe
Confidence            98876544322111                                                     9999999999999


Q ss_pred             EEEeCCcCCCCCcC----cccC---CCeEEEeccccccccCCCceEEEEEEcChhHH-HHHHHHHHhc------------
Q 019543          125 LLVDNSIMSPVLSR----PLEL---GADIVMHSATKFIAGHSDVMAGVLAVKGERLA-KELYFLQNAE------------  184 (339)
Q Consensus       125 livD~a~a~g~~~~----~~~~---~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~-~~l~~~~~~~------------  184 (339)
                      +++|++|+.+....    ....   .+|.++.|++|+++++.+  +|+++.+++... +.+.....++            
T Consensus       267 lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~  344 (475)
T 3k40_A          267 IHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD--CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYR  344 (475)
T ss_dssp             EEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESSGGGC-----------------------
T ss_pred             EEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc--eEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcc
Confidence            99999998764321    1111   369999999999997643  466666665442 2221110000            


Q ss_pred             --C--CC--CChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          185 --G--SG--LAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       185 --~--~~--~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                        +  .+  ...+..+.+++  +.+.++.+.++..++++++++.|++.++++.+.-|                 ..++++
T Consensus       345 ~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~-----------------~~~iv~  407 (475)
T 3k40_A          345 HWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI-----------------NMGLVC  407 (475)
T ss_dssp             ----CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-----------------BTTEEE
T ss_pred             cccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------ceEEEE
Confidence              0  00  01222233332  34556778888899999999999999887643211                 357999


Q ss_pred             Eee-CCHHHHHHHHccCCccee
Q 019543          257 FLT-GSLALSKHVVETTKYFSI  277 (339)
Q Consensus       257 ~~~-~~~~~~~~~~~~L~~~~i  277 (339)
                      |.+ +......++.++|...|.
T Consensus       408 f~~~~~~~~~~~l~~~L~~~g~  429 (475)
T 3k40_A          408 FRLKGSNERNEALLKRINGRGH  429 (475)
T ss_dssp             EEESSCHHHHHHHHHHHHHHTS
T ss_pred             EEeCCchHHHHHHHHHHHhCCc
Confidence            987 444456778888766543

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.61  E-value=2.7e-14  Score=137.87  Aligned_cols=167  Identities=19%  Similarity=0.195  Sum_probs=112.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCc-cchH-----------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLY-GGTD-----------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y-~~~~-----------------------  107 (339)
                      .++...+||++++++++.+++++++||++|+.++ ..+++|||  +++++.| +.+.                       
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~  150 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL  150 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccc
Confidence            4677899999999999999999999999999854 45789999  4556655 2100                       


Q ss_pred             ----------H----HHH-----------------------------HHHHHHHHHcCCEEEEeCCcCCC----------
Q 019543          108 ----------R----LLS-----------------------------RKIAEMAHAHGALLLVDNSIMSP----------  134 (339)
Q Consensus       108 ----------~----~~~-----------------------------~~I~~la~~~g~~livD~a~a~g----------  134 (339)
                                .    .+.                             ++|+++|++||++||+|++|+.|          
T Consensus       151 ~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~  230 (456)
T 2ez2_A          151 NIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQ  230 (456)
T ss_dssp             CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHST
T ss_pred             cccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccccccc
Confidence                      0    110                             89999999999999999999763          


Q ss_pred             -CCcCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-C----CCCChHH-HHHHHhch
Q 019543          135 -VLSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G----SGLAPFD-CWICLRGV  200 (339)
Q Consensus       135 -~~~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~----~~~~~~~-a~~~~~~l  200 (339)
                       ..+...       ....|+++.|++|+.+ .+  +||+++++++++++.++..+... +    ...+... ++++...+
T Consensus       231 ~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~  307 (456)
T 2ez2_A          231 GFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR  307 (456)
T ss_dssp             TCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH
T ss_pred             ccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH
Confidence             222221       1236888888888755 32  47899886567878777655432 1    1223221 21122223


Q ss_pred             hhH-HHHHHHHHHHHHHHHHHHhCC
Q 019543          201 KTM-ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       201 ~~~-~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      +.+ +...+++.++.+++.+.|++.
T Consensus       308 ~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          308 EAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            333 455666677788888888764

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.60  E-value=5.3e-14  Score=133.87  Aligned_cols=170  Identities=14%  Similarity=0.152  Sum_probs=112.0

Q ss_pred             chHHHHHHHHHhHh-CCC-------eE--EEcCcHHHHHHHH---HH-hcCCCCEEEEcCCCccchHHHHH---------
Q 019543           55 PTRDALESLLAKLD-KAD-------RA--LCFTSGMAALAAV---TH-LLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~-g~~-------~~--l~~~sG~~A~~~i---l~-ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      +...+|++.+++++ |..       +.  +.+++|+.|+.++   +. ++++||+|+++++.|.+....++         
T Consensus        79 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~  158 (409)
T 4eu1_A           79 TGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPY  158 (409)
T ss_dssp             TCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEE
T ss_pred             CCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEE
Confidence            44578999999875 532       33  4578888888643   22 56899999999998876653332         


Q ss_pred             -----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC------
Q 019543          112 -----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR------  138 (339)
Q Consensus       112 -----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~------  138 (339)
                                                                     ++|+++|++||+++|+|++|+......      
T Consensus       159 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~  238 (409)
T 4eu1_A          159 SYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAF  238 (409)
T ss_dssp             CCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred             EeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchH
Confidence                                                           779999999999999999987554322      


Q ss_pred             cc----cC-CCeEEEeccccccccCCCceEEEE--EEcChh----HHHHHHHHHHhcCCCCChHHHHHHHhchh------
Q 019543          139 PL----EL-GADIVMHSATKFIAGHSDVMAGVL--AVKGER----LAKELYFLQNAEGSGLAPFDCWICLRGVK------  201 (339)
Q Consensus       139 ~~----~~-~~Di~~~S~sK~l~g~~~~~gG~v--~~~~~~----l~~~l~~~~~~~~~~~~~~~a~~~~~~l~------  201 (339)
                      +.    .. .-.++++|+||.++.+|..+ |++  ++.+++    +.+.++...+......++..++++...|+      
T Consensus       239 ~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  317 (409)
T 4eu1_A          239 VPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTA  317 (409)
T ss_dssp             HHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHH
Confidence            11    11 22488999999999776544 565  455556    55555554433333444554444333332      


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          202 ----TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       202 ----~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                          .+...+++..++.+++.+.|++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g  345 (409)
T 4eu1_A          318 LWKKELKQMSSRIAEVRKRLVSELKACG  345 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                345566677788888888888753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.60  E-value=2.3e-14  Score=135.40  Aligned_cols=171  Identities=12%  Similarity=0.051  Sum_probs=109.9

Q ss_pred             CchHHHHHHHHHhHh---C-----CCeEEE--cCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHHHHH---------
Q 019543           54 NPTRDALESLLAKLD---K-----ADRALC--FTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~---g-----~~~~l~--~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      .+...+|++.+++++   +     .+++++  ++||++|+.+++.   .+.|||+|+++.+.|++....+.         
T Consensus        68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~  147 (396)
T 2q7w_A           68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREY  147 (396)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEE
Confidence            344678888888886   2     346666  8888999975442   35799999999998876543222         


Q ss_pred             -----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---C--c
Q 019543          112 -----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---R--P  139 (339)
Q Consensus       112 -----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~---~--~  139 (339)
                                                                     ++|+++|++||+++|+|++|+.....   .  +
T Consensus       148 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~  227 (396)
T 2q7w_A          148 AYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEG  227 (396)
T ss_dssp             ECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHH
T ss_pred             ecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHH
Confidence                                                           68999999999999999999754332   1  1


Q ss_pred             cc----C-CCeEEEeccccccccCCCceEEEEEE--cChh----HHHHHHHHHHhcCCCCChHHHHHHHhchh-------
Q 019543          140 LE----L-GADIVMHSATKFIAGHSDVMAGVLAV--KGER----LAKELYFLQNAEGSGLAPFDCWICLRGVK-------  201 (339)
Q Consensus       140 ~~----~-~~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~----l~~~l~~~~~~~~~~~~~~~a~~~~~~l~-------  201 (339)
                      +.    . ..++++.|+||.++.+|. ..|++++  ++++    +.+.+....+......++...+++...|+       
T Consensus       228 ~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~  306 (396)
T 2q7w_A          228 LRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAI  306 (396)
T ss_dssp             HHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHH
Confidence            11    1 235889999999986554 4567765  3333    44444433322223335555444444332       


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          202 ---TMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       202 ---~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                         .++...++..++.+++.+.|++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          307 WEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               233445556677788888888763

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.7e-14  Score=139.37  Aligned_cols=209  Identities=14%  Similarity=0.172  Sum_probs=135.4

Q ss_pred             CcccCCCCchHHHHHHHH----HhHhCCC------------eEEEcCcHHHHHHH-HHHhc-------------------
Q 019543           47 YDYTRSGNPTRDALESLL----AKLDKAD------------RALCFTSGMAALAA-VTHLL-------------------   90 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~l----a~~~g~~------------~~l~~~sG~~A~~~-il~ll-------------------   90 (339)
                      +.|.  .+|...++|+++    ++++|.+            ..++++||++||.. ++...                   
T Consensus       108 ~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~  185 (481)
T 4e1o_A          108 FTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL  185 (481)
T ss_dssp             SSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHH
T ss_pred             CCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccc
Confidence            4454  678888888866    4566754            46888999999863 33221                   


Q ss_pred             CCCCEEEEcCCCccchHHHHH------------------------------------------------------HHHHH
Q 019543           91 GTGEEIVAGDDLYGGTDRLLS------------------------------------------------------RKIAE  116 (339)
Q Consensus        91 ~~GD~Vi~~~~~y~~~~~~~~------------------------------------------------------~~I~~  116 (339)
                      .++++|+++...+..+.....                                                      ++|++
T Consensus       186 ~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~  265 (481)
T 4e1o_A          186 NARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP  265 (481)
T ss_dssp             HTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred             cCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence            267899998876654432211                                                      99999


Q ss_pred             HHHHcCCEEEEeCCcCCCCCcC----cccCC---CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hhc----
Q 019543          117 MAHAHGALLLVDNSIMSPVLSR----PLELG---ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NAE----  184 (339)
Q Consensus       117 la~~~g~~livD~a~a~g~~~~----~~~~~---~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~~----  184 (339)
                      +|++||+++++|++|+.+....    ....+   +|.++.+++|+++++.+  +|+++.+++.......... .+.    
T Consensus       266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g--~g~l~~~~~~~l~~~~~~~~~yl~~~~  343 (481)
T 4e1o_A          266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD--CTGFWVKDKYKLQQTFSVNPIYLRHAN  343 (481)
T ss_dssp             HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESBHHHHHTTTCCCCGGGCCTT
T ss_pred             HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc--eEEEEEeCHHHHHHHhcCCchhccCcc
Confidence            9999999999999998764321    11123   59999999999997743  4566666654332111100 010    


Q ss_pred             --------------CCCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhc
Q 019543          185 --------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA  248 (339)
Q Consensus       185 --------------~~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~  248 (339)
                                    +.....+..+.+++  +.+.+++++++..++++++.+.|++.|+++.+.-|               
T Consensus       344 ~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---------------  408 (481)
T 4e1o_A          344 SGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR---------------  408 (481)
T ss_dssp             TTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC---------------
T ss_pred             cCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---------------
Confidence                          00112233333333  34567788888999999999999999887643211               


Q ss_pred             CCCcceEEEeeC-CHHHHHHHHccCCcce
Q 019543          249 KGAGSVLSFLTG-SLALSKHVVETTKYFS  276 (339)
Q Consensus       249 ~~~~~ivs~~~~-~~~~~~~~~~~L~~~~  276 (339)
                        ..++++|.+. ......++.++|...|
T Consensus       409 --~~~~v~f~~~~~~~~~~~l~~~L~~~g  435 (481)
T 4e1o_A          409 --HLGLVVFRLKGPNSLTENVLKEIAKAG  435 (481)
T ss_dssp             --CSSEEEEEESSCHHHHHHHHHHHHHHC
T ss_pred             --ceeEEEEEeCCchHHHHHHHHHHHhCC
Confidence              3578999874 4445667888776655

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.59  E-value=2e-14  Score=138.82  Aligned_cols=240  Identities=16%  Similarity=0.177  Sum_probs=149.4

Q ss_pred             CCCchHHHHHHHHHhHhCCC-eEEEcCcHHHHHHHHHH-hc-----C---CCCEEEEcCCCccch---------------
Q 019543           52 SGNPTRDALESLLAKLDKAD-RALCFTSGMAALAAVTH-LL-----G---TGEEIVAGDDLYGGT---------------  106 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~-~~l~~~sG~~A~~~il~-ll-----~---~GD~Vi~~~~~y~~~---------------  106 (339)
                      +.++...+|+++|+++++.. ++++++||++|+..++. +.     .   ++|+|++.++.|++.               
T Consensus        88 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~  167 (452)
T 3n5m_A           88 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRY  167 (452)
T ss_dssp             SEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTT
T ss_pred             cCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhcc
Confidence            45578899999999998753 47788899999986544 33     4   789999988776531               


Q ss_pred             ---------------------------------HHHHH---------------------------------HHHHHHHHH
Q 019543          107 ---------------------------------DRLLS---------------------------------RKIAEMAHA  120 (339)
Q Consensus       107 ---------------------------------~~~~~---------------------------------~~I~~la~~  120 (339)
                                                       ...++                                 ++|.++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~  247 (452)
T 3n5m_A          168 QYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQK  247 (452)
T ss_dssp             TTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH
T ss_pred             ccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHH
Confidence                                             11110                                 889999999


Q ss_pred             cCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCC-CceEEEEEEcChhHHHHHHH---HHH---hcCCC
Q 019543          121 HGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHS-DVMAGVLAVKGERLAKELYF---LQN---AEGSG  187 (339)
Q Consensus       121 ~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~-~~~gG~v~~~~~~l~~~l~~---~~~---~~~~~  187 (339)
                      ||++||+||+|. .|..+..     .....|++  ||||++++ | .. .|++++++ ++++.+..   .+.   ..+..
T Consensus       248 ~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~-ig~~~~~~-~i~~~~~~~~~~~~~~~~~t~~  322 (452)
T 3n5m_A          248 HGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLP-LSATAVKR-EIYEAFKGKGEYEFFRHINTFG  322 (452)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSC-CEEEEEEH-HHHGGGCSSSTTCSCCCCCSST
T ss_pred             cCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcc-eEEEEECH-HHHHHHhhccCCCCccccCCCC
Confidence            999999999985 3322221     12234655  58899986 4 44 45777764 67666532   111   12345


Q ss_pred             CChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHh----CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-
Q 019543          188 LAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLA----SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-  260 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~----~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-  260 (339)
                      .+|+.++.++..|+.+.  ...++.+++.+++.+.|+    .++.+..+.                  +.|.+++|.+. 
T Consensus       323 ~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~------------------~~g~~~~i~~~~  384 (452)
T 3n5m_A          323 GNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR------------------GKGLLVGIELVN  384 (452)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE------------------ESSSCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE------------------EEEEEEEEEEec
Confidence            67777776666666432  234555556666666554    444433222                  24567777652 


Q ss_pred             C--------HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHH
Q 019543          261 S--------LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK  332 (339)
Q Consensus       261 ~--------~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~  332 (339)
                      +        .+.+.++++.|...|+.+..++.+.    +                 -.++.|||++++..+++.++.+.+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~----~-----------------~~~~~iRi~~~~~~t~e~i~~~l~  443 (452)
T 3n5m_A          385 DKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT----A-----------------GYNNILTLAPPLVISSEEIAFVIG  443 (452)
T ss_dssp             ETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS----T-----------------TCCCEEEECCCTTCCHHHHHHHHH
T ss_pred             CCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc----C-----------------CCCCEEEEECCCCCCHHHHHHHHH
Confidence            1        2334567777777788776543211    0                 135789999887666665555555


Q ss_pred             HHh
Q 019543          333 ALR  335 (339)
Q Consensus       333 al~  335 (339)
                      +|+
T Consensus       444 ~l~  446 (452)
T 3n5m_A          444 TLK  446 (452)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.59  E-value=5.2e-14  Score=135.28  Aligned_cols=232  Identities=14%  Similarity=0.068  Sum_probs=141.1

Q ss_pred             HHHHHHHHHhHhC--------CCeEEEcCcHHHHHHHHH-Hh--------cCCCCEEEEcCCCccchHHHHH--------
Q 019543           57 RDALESLLAKLDK--------ADRALCFTSGMAALAAVT-HL--------LGTGEEIVAGDDLYGGTDRLLS--------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~~~l~~~sG~~A~~~il-~l--------l~~GD~Vi~~~~~y~~~~~~~~--------  111 (339)
                      ..+|++.++++++        .+++++++++++|+.+++ .+        ++|||+|+++.|.|.+....++        
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~  181 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV  181 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee
Confidence            6789999998875        346777777799998654 57        8999999999999988765554        


Q ss_pred             -----HHHH------------------------HHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCCCc
Q 019543          112 -----RKIA------------------------EMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 -----~~I~------------------------~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                           ++|.                        ++++  ++..+.|+++-.... ...+..+.+|+++||||.++.+| .
T Consensus       182 ~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-~  258 (427)
T 2hox_A          182 WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSG-S  258 (427)
T ss_dssp             EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCCCSST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGG-G
T ss_pred             ecCCHHHHHHhhcCCceEEEEcCCCCCcccccHHHHc--CCCEEEeecccCCCCCccccCCCceEEEEeChhcCCCCC-c
Confidence                 1111                        1221  345566666532110 01112356899999999998766 4


Q ss_pred             eEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh---------------HHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          162 MAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT---------------MALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~---------------~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      +.|+++++++++++.++.++.......+.....++...|+.               +...+++.+++.+++.+.|+++++
T Consensus       259 RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g  338 (427)
T 2hox_A          259 RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDR  338 (427)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            56788886567888888877655555666554444333332               233456667788889999998877


Q ss_pred             ceEEec--CCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHH
Q 019543          227 VKKVNY--AGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEV  303 (339)
Q Consensus       227 i~~v~~--p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~  303 (339)
                      +....+  |.     +...+.......+..+++.+...  ..++++.| +..||.++.|..+.                 
T Consensus       339 ~~~~~~~~~~-----~~~~~~~~~p~~g~f~~~~~~~~--~~~~~~~ll~~~gI~v~pg~~f~-----------------  394 (427)
T 2hox_A          339 FSYQELPQSE-----YCNYFRRMRPPSPSYAWVKCEWE--EDKDCYQTFQNGRINTQNGVGFE-----------------  394 (427)
T ss_dssp             EECCCCCSCE-----EETTTTEEECCCCSEEEEEECSG--GGCSHHHHHHHTTEECEEGGGGT-----------------
T ss_pred             cccccccccc-----ccccccccCCCCceEEEEECCCc--HHHHHHHHHHHCCEEEcCCCccC-----------------
Confidence            642101  10     00000000011345677777541  23445544 35688877664321                 


Q ss_pred             HHhCCCCCCeEEEEecc
Q 019543          304 RQARGLTEDLVRISVGI  320 (339)
Q Consensus       304 ~~~~g~~~~~lRisvg~  320 (339)
                           ..++.+|||++.
T Consensus       395 -----~~~~~~Ris~~~  406 (427)
T 2hox_A          395 -----ASSRYVRLSLIK  406 (427)
T ss_dssp             -----SCTTEEEEECSS
T ss_pred             -----CCCCEEEEEecC
Confidence                 124789999996

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.59  E-value=7.8e-14  Score=134.74  Aligned_cols=169  Identities=13%  Similarity=0.076  Sum_probs=109.8

Q ss_pred             chHHHHHHHHHhHh-CCC-------eEEE--cCcHHHHHHH---HHHhcCCCCEEEEcCCCccchHHHH-----------
Q 019543           55 PTRDALESLLAKLD-KAD-------RALC--FTSGMAALAA---VTHLLGTGEEIVAGDDLYGGTDRLL-----------  110 (339)
Q Consensus        55 ~~~~~le~~la~~~-g~~-------~~l~--~~sG~~A~~~---il~ll~~GD~Vi~~~~~y~~~~~~~-----------  110 (339)
                      ....++++.+++++ |.+       ++++  +++|+.|+..   +++++.|||+|+++++.|......+           
T Consensus        94 ~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v  173 (448)
T 3meb_A           94 AGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPY  173 (448)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCC
T ss_pred             cchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeE
Confidence            34678888888876 643       5777  8888999864   3457889999999988776432110           


Q ss_pred             -----------------------H---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--
Q 019543          111 -----------------------S---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--  138 (339)
Q Consensus       111 -----------------------~---------------------------~~I~~la~~~g~~livD~a~a~g~~~~--  138 (339)
                                             +                           ++|+++|++||+++|+|++|.......  
T Consensus       174 ~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~  253 (448)
T 3meb_A          174 KEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFE  253 (448)
T ss_dssp             EEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHH
T ss_pred             EEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcc
Confidence                                   0                           779999999999999999987543322  


Q ss_pred             ----cc----cCC-CeEEEeccccccccCCCceEEEE--EE--------cCh----hHHHHHHHHHHhcCCCCChHHHHH
Q 019543          139 ----PL----ELG-ADIVMHSATKFIAGHSDVMAGVL--AV--------KGE----RLAKELYFLQNAEGSGLAPFDCWI  195 (339)
Q Consensus       139 ----~~----~~~-~Di~~~S~sK~l~g~~~~~gG~v--~~--------~~~----~l~~~l~~~~~~~~~~~~~~~a~~  195 (339)
                          .+    ..+ -.+++.|+||.++.+|..+| ++  ++        +++    .+.+.+....+......+...+++
T Consensus       254 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG-~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a  332 (448)
T 3meb_A          254 ADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIG-CLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYI  332 (448)
T ss_dssp             HHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCE-EEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cCchhHHHHhhcCCcEEEEecccccCCCccccce-eeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHH
Confidence                01    112 24789999999997775554 54  45        434    344444444433333444444433


Q ss_pred             HHhch----------hhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          196 CLRGV----------KTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       196 ~~~~l----------~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      +...|          +.++...++..++.+++.+.|+++
T Consensus       333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33332          224555666677788888888765

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.58  E-value=1.3e-14  Score=137.12  Aligned_cols=169  Identities=13%  Similarity=0.056  Sum_probs=107.9

Q ss_pred             chHHHHHHHHHhHh-CC----CeEEE--cCcHHHHHHHHHH-h--cCCCCEEEEcCCCccchHHHHH-------------
Q 019543           55 PTRDALESLLAKLD-KA----DRALC--FTSGMAALAAVTH-L--LGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~-g~----~~~l~--~~sG~~A~~~il~-l--l~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ....+|++.+++++ +.    +++++  ++||++|+.+++. +  +.|||+|+++.+.|++....+.             
T Consensus        69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~  148 (394)
T 2ay1_A           69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFD  148 (394)
T ss_dssp             SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEE
T ss_pred             CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEeccc
Confidence            34678999999886 43    46776  8888999986543 3  3599999999998876543222             


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc---C--cc---
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS---R--PL---  140 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~---~--~~---  140 (339)
                                                                 ++|+++|++||+++|+|++|+.....   .  ++   
T Consensus       149 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  228 (394)
T 2ay1_A          149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLI  228 (394)
T ss_dssp             TTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHH
T ss_pred             ccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHH
Confidence                                                       68999999999999999999765432   1  11   


Q ss_pred             -cCC-CeEEEeccccccccCCCceEEEEEE--cChhHHHHHH----HHHHhcCCCCChHHHHHHHhchh----------h
Q 019543          141 -ELG-ADIVMHSATKFIAGHSDVMAGVLAV--KGERLAKELY----FLQNAEGSGLAPFDCWICLRGVK----------T  202 (339)
Q Consensus       141 -~~~-~Di~~~S~sK~l~g~~~~~gG~v~~--~~~~l~~~l~----~~~~~~~~~~~~~~a~~~~~~l~----------~  202 (339)
                       ..+ ..++++|+||+++.+|. ..|++++  +++++.+.+.    ..........++..++++...|+          .
T Consensus       229 ~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~  307 (394)
T 2ay1_A          229 ASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAE  307 (394)
T ss_dssp             HHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             hhcCCCEEEEEeccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHH
Confidence             112 24789999999986553 4567776  3344444332    22222222335554444433332          2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Q 019543          203 MALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       203 ~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      ++...++..++.+++.+.|+++
T Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          308 LEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3444555666777777777764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.57  E-value=2.5e-14  Score=137.24  Aligned_cols=206  Identities=15%  Similarity=0.131  Sum_probs=130.2

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++...+|++++++++ +.+.+++++||++|+..++. +.  .++|+|++.++.|++..                     
T Consensus        93 ~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~  172 (434)
T 3l44_A           93 PTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAG  172 (434)
T ss_dssp             CCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCC
Confidence            4677889999999998 56789999999999985443 32  37899999887765411                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR  138 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~  138 (339)
                                           ..+.                            ++|.++|++||++||+||+|.....+.
T Consensus       173 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~  252 (434)
T 3l44_A          173 VPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMY  252 (434)
T ss_dssp             CCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSS
T ss_pred             CCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccc
Confidence                                 0111                            899999999999999999996221111


Q ss_pred             c-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---hcCCCCChHHHHHHHhchhhH--HHHHH
Q 019543          139 P-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKTM--ALRVE  208 (339)
Q Consensus       139 ~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---~~~~~~~~~~a~~~~~~l~~~--~~r~~  208 (339)
                      .     .....|+  .|+||.+++ | ...|+++++ +++++.+.....   ..+...+++.++.+...++.+  +...+
T Consensus       253 ~~~~~~~~~~~di--~t~sK~~~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~  327 (434)
T 3l44_A          253 GGAQDLLGVTPDL--TALGKVIGG-G-LPIGAYGGK-KEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYE  327 (434)
T ss_dssp             SCHHHHHTCCCSE--EEEEGGGGT-T-SSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cHHHHHcCCCCCe--eehhhhhcC-C-cCeeeEEEc-HHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHH
Confidence            1     1223464  468899984 4 345667666 466665543211   123556777766666655543  33455


Q ss_pred             HHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-------------CHHHHHHHHcc
Q 019543          209 KQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVET  271 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-------------~~~~~~~~~~~  271 (339)
                      +.+++.+++.+.|++.    +.+..+                  ++.+.++++.+.             +.....++.+.
T Consensus       328 ~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (434)
T 3l44_A          328 KLDELGATLEKGILEQAAKHNIDITL------------------NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKL  389 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEE------------------EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEE------------------EeeccEEEEEEecCcccchhhccccCHHHHHHHHHH
Confidence            5666666777766542    322111                  225678888762             23334667777


Q ss_pred             CCcceeeccc
Q 019543          272 TKYFSITVSF  281 (339)
Q Consensus       272 L~~~~i~v~~  281 (339)
                      |.+.|+.++.
T Consensus       390 l~~~Gv~v~~  399 (434)
T 3l44_A          390 MLQEGVNLAP  399 (434)
T ss_dssp             HHHTTEECCS
T ss_pred             HHHCCeEEee
Confidence            7777776653

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.57  E-value=9e-14  Score=133.83  Aligned_cols=236  Identities=17%  Similarity=0.172  Sum_probs=147.8

Q ss_pred             chHHHHHHHHHhHhCCCeE--EEcCcHHHHHHH-HHH-hcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           55 PTRDALESLLAKLDKADRA--LCFTSGMAALAA-VTH-LLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~--l~~~sG~~A~~~-il~-ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      +..+++++.+++++|.+..  +++++|++|+.+ .+. .+++||+|+++++.|+.+...+.                   
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~  187 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR  187 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence            4578999999999998754  566666755443 222 46899999999998876643221                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCC-cCCCCCcCcccCCCeEEEecccc-----ccccC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNS-IMSPVLSRPLELGADIVMHSATK-----FIAGH  158 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a-~a~g~~~~~~~~~~Di~~~S~sK-----~l~g~  158 (339)
                                                 ++|.++|++||+++++|.. ++.|....+..+++|++++|..|     +++|+
T Consensus       188 ~d~~~i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp  267 (438)
T 1wyu_A          188 TPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGP  267 (438)
T ss_dssp             CCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCS
T ss_pred             cCHHHhCCCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCCccCCCC
Confidence                                       9999999999999998844 55554433334578999999333     34443


Q ss_pred             CCceEEEEEEcChhHHHHHHH-------------------------HHHhcCC-CC---ChHHHHH-H--Hhchh--hHH
Q 019543          159 SDVMAGVLAVKGERLAKELYF-------------------------LQNAEGS-GL---APFDCWI-C--LRGVK--TMA  204 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~-------------------------~~~~~~~-~~---~~~~a~~-~--~~~l~--~~~  204 (339)
                         .+|++++++ ++.+.+..                         .++..++ .+   ....+.. +  +..+.  .++
T Consensus       268 ---~~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~  343 (438)
T 1wyu_A          268 ---HFGFLATKK-AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (438)
T ss_dssp             ---CCEEEEECG-GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CeeEEEEcH-HHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHH
Confidence               357888875 45544310                         0111121 11   2222211 1  22222  245


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec--ccC
Q 019543          205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV--SFG  282 (339)
Q Consensus       205 ~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v--~~G  282 (339)
                      +..++..++++++.+.|++.++++.+ .|.    +           .-.++.|.++  ....++.+.|...|+.+  +.|
T Consensus       344 ~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~----~-----------~~~~~~~~~~--~~~~~~~~~L~~~gi~v~~~~~  405 (438)
T 1wyu_A          344 EVALKSVEMAHKLHALLLEVPGVRPF-TPK----P-----------FFNEFALALP--KDPEAVRRALAERGFHGATPVP  405 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCEEC-SCS----S-----------BCSEEEEECS--SCHHHHHHHHHHTTCCCCEECC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEC-CCC----C-----------eEEEEEEeCC--CCHHHHHHHHHHCCceeccccc
Confidence            56667778899999999998876532 221    1           2234555543  13456777776667765  222


Q ss_pred             CcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          283 SVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       283 ~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ..                        .+++.||||++..++++.++.+.++|++
T Consensus       406 ~~------------------------~~~~~lRis~~~~~t~edi~~~~~~l~~  435 (438)
T 1wyu_A          406 RE------------------------YGENLALFAATELHEEEDLLALREALKE  435 (438)
T ss_dssp             TT------------------------SCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             cc------------------------cCCCeEEEEecccCCHHHHHHHHHHHHH
Confidence            11                        0247899999988888888888888865

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.56  E-value=1e-13  Score=135.16  Aligned_cols=147  Identities=16%  Similarity=0.212  Sum_probs=93.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc-c-----c-CCCeEEEeccccccccCCCceEEEEEEcChhH-HHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP-L-----E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~-~-----~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l-~~~l~~~~~~  183 (339)
                      ++|+++|++||+++++|++|+.+....+ .     . .++|++++|+||+++++  ..+|+++++++.. .+.+.....+
T Consensus       255 ~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p--~~~G~l~~~~~~~l~~~~~~~~~y  332 (486)
T 1js3_A          255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN--FDCSAMWVKRRTDLTGAFKLDPVY  332 (486)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC--SSCEEEEESCHHHHHGGGC-----
T ss_pred             HHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC--cceEEEEEeCHHHHHHHhcCCchh
Confidence            9999999999999999999987643211 1     1 26799999999999865  3467888876543 2322110100


Q ss_pred             c--------------------CCCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCch
Q 019543          184 E--------------------GSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  241 (339)
Q Consensus       184 ~--------------------~~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~  241 (339)
                      .                    +.....+..+.++.  +.+.+.++.++..++++++.+.|++.|+++.+..|        
T Consensus       333 l~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~--------  404 (486)
T 1js3_A          333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV--------  404 (486)
T ss_dssp             -------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC--------
T ss_pred             hCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC--------
Confidence            0                    00112233333333  34556777888889999999999998887643222        


Q ss_pred             HhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCccee
Q 019543          242 ELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSI  277 (339)
Q Consensus       242 ~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i  277 (339)
                               ..+++.|.+.+ .....++.+.|...|+
T Consensus       405 ---------~~~~v~f~~~~~~~~~~~l~~~L~~~g~  432 (486)
T 1js3_A          405 ---------TLGLVCFRLKGSDGLNEALLERINSARK  432 (486)
T ss_dssp             ---------CSSEEEEEESSCHHHHHHHHHHHHHHTS
T ss_pred             ---------ceeEEEEEecChHHHHHHHHHHHHhcCC
Confidence                     35688888753 2234667777765554

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.56  E-value=1.2e-13  Score=133.50  Aligned_cols=231  Identities=15%  Similarity=0.114  Sum_probs=147.5

Q ss_pred             CCCCchHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHHHH-h---cC----------C-CCEEEEcCCCccc-------
Q 019543           51 RSGNPTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH-L---LG----------T-GEEIVAGDDLYGG-------  105 (339)
Q Consensus        51 r~~~~~~~~le~~la~~~g---~~~~l~~~sG~~A~~~il~-l---l~----------~-GD~Vi~~~~~y~~-------  105 (339)
                      ++.++...+++++|+++++   .+++++++||++|+..++. +   .+          | ||+||+.++.|++       
T Consensus        97 ~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~  176 (449)
T 2cjg_A           97 DVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS  176 (449)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred             ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence            4456778999999999984   4688899999999975432 1   22          2 8999998876542       


Q ss_pred             --------------------------------------------hHHHH----H------------------------HH
Q 019543          106 --------------------------------------------TDRLL----S------------------------RK  113 (339)
Q Consensus       106 --------------------------------------------~~~~~----~------------------------~~  113 (339)
                                                                  ....+    .                        ++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  256 (449)
T 2cjg_A          177 LTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAA  256 (449)
T ss_dssp             TCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHH
T ss_pred             hcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHH
Confidence                                                        11122    1                        89


Q ss_pred             HHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH-----HHH
Q 019543          114 IAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF-----LQN  182 (339)
Q Consensus       114 I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~-----~~~  182 (339)
                      |.++|++||++||+||+|+ .|..+..     .....|++  |+||++  +   + |++++++ ++.+.+..     ...
T Consensus       257 l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~---i-G~~~~~~-~~~~~l~~~~~~~~~~  327 (449)
T 2cjg_A          257 MRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q---V-CGVMAGR-RVDEVADNVFAVPSRL  327 (449)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S---S-EEEEECG-GGGGSTTCTTTSTTSS
T ss_pred             HHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c---E-EEEEECH-HHhhhhhhcccCCccc
Confidence            9999999999999999997 3332221     12345765  678999  2   3 5666665 56654221     111


Q ss_pred             hcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCC----CC-ceEEecCCCCCCCchHhHhhhcCCCcceE
Q 019543          183 AEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PR-VKKVNYAGLPEHPGHELHYSQAKGAGSVL  255 (339)
Q Consensus       183 ~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~----~~-i~~v~~p~~~~~~~~~~~~~~~~~~~~iv  255 (339)
                      ..+...++..++.+...|+.+.  ...++.+++.+++.+.|+++    +. +..+                  ++.|.++
T Consensus       328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~------------------~~~g~~~  389 (449)
T 2cjg_A          328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP------------------RGRGLMC  389 (449)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE------------------EEETTEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE------------------eeccEEE
Confidence            1234556776666666665432  34556667777888877653    33 3211                  2256788


Q ss_pred             EEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Q 019543          256 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       256 s~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~  335 (339)
                      +|.+.+.....+|++.|.+.|+.++.+                           .++.||+++.+..+++.++.+.++|+
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------------------------g~~~iRi~~~~~~t~e~i~~~l~~l~  442 (449)
T 2cjg_A          390 AFSLPTTADRDELIRQLWQRAVIVLPA---------------------------GADTVRFRPPLTVSTAEIDAAIAAVR  442 (449)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEECChHHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            888876545667888776667765422                           13679999887666665555555554

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.55  E-value=5.6e-14  Score=143.99  Aligned_cols=171  Identities=13%  Similarity=0.092  Sum_probs=115.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccch------------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGT------------------------  106 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~------------------------  106 (339)
                      ....+.++|+.+++++|.++++++++| ++|+.+ +.++++|||+|+++++.|...                        
T Consensus       203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~  282 (755)
T 2vyc_A          203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGII  282 (755)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCB
T ss_pred             CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccc
Confidence            345688999999999999988888888 477875 556899999999987654211                        


Q ss_pred             ---------H----HHH--------------H----------------HHHHHHHHHcCCEEEEeCCcCCCCCc------
Q 019543          107 ---------D----RLL--------------S----------------RKIAEMAHAHGALLLVDNSIMSPVLS------  137 (339)
Q Consensus       107 ---------~----~~~--------------~----------------~~I~~la~~~g~~livD~a~a~g~~~------  137 (339)
                               .    ..+              +                ++|+++|++||+++++|++|+.+...      
T Consensus       283 g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~  362 (755)
T 2vyc_A          283 GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD  362 (755)
T ss_dssp             CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTT
T ss_pred             cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCC
Confidence                     1    111              0                99999999999999999999764321      


Q ss_pred             -CcccCC--CeE------EEeccccccccCCCceEEEEEEcCh--hH-HHHHHHHHHhc-CCCCChHHHHH---HHhchh
Q 019543          138 -RPLELG--ADI------VMHSATKFIAGHSDVMAGVLAVKGE--RL-AKELYFLQNAE-GSGLAPFDCWI---CLRGVK  201 (339)
Q Consensus       138 -~~~~~~--~Di------~~~S~sK~l~g~~~~~gG~v~~~~~--~l-~~~l~~~~~~~-~~~~~~~~a~~---~~~~l~  201 (339)
                       .++ .+  +|+      +++|+||+++|+.  .||+++++++  .+ ...+......+ ++..+....+.   +...++
T Consensus       363 ~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~  439 (755)
T 2vyc_A          363 HYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMD  439 (755)
T ss_dssp             SSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHS
T ss_pred             cchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence             122 45  676      9999999998753  4778877653  12 23333332233 34444432222   222222


Q ss_pred             h--HHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          202 T--MALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       202 ~--~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      .  ...++++..++++++++.|+++++
T Consensus       440 ~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          440 GNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2  356788888889999999887655

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.55  E-value=6.1e-14  Score=134.67  Aligned_cols=207  Identities=15%  Similarity=0.169  Sum_probs=136.1

Q ss_pred             CCCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH--------------------
Q 019543           52 SGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD--------------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~--------------------  107 (339)
                      +.++..++++++|++++ +.+.+++++||++|+.+++.+   +.++|+|++.++.|++..                    
T Consensus        93 ~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~  172 (434)
T 2epj_A           93 APGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSA  172 (434)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCC
Confidence            35677899999999999 788899999999999764432   456677887777665310                    


Q ss_pred             ----------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-
Q 019543          108 ----------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-  136 (339)
Q Consensus       108 ----------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-  136 (339)
                                            ..++                            ++|.++|++||++||+||+|+ |.. 
T Consensus       173 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~  251 (434)
T 2epj_A          173 GVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRL  251 (434)
T ss_dssp             TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTS
T ss_pred             CCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeC
Confidence                                  0110                            899999999999999999997 331 


Q ss_pred             cCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--h-cCCCCChHHHHHHHhchhhHH--HH
Q 019543          137 SRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A-EGSGLAPFDCWICLRGVKTMA--LR  206 (339)
Q Consensus       137 ~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~-~~~~~~~~~a~~~~~~l~~~~--~r  206 (339)
                      +..     .....|++  |+||++++ | ..+|++++++ ++++.+.....  . .+...+|..++.+...|+.+.  ..
T Consensus       252 g~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~  326 (434)
T 2epj_A          252 GLEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSR-EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV  326 (434)
T ss_dssp             STTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred             CcchhhHHhCCCCCee--eecchhcC-C-cceeeeeecH-HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence            111     12235764  78999996 4 4577888874 66665543111  1 123567777766666666543  34


Q ss_pred             HHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------HHHHHHHH
Q 019543          207 VEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVV  269 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------~~~~~~~~  269 (339)
                      .++.+++.+++.+.|++.    +.+..+                  ++.|.+++|.+.+             .....+|.
T Consensus       327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  388 (434)
T 2epj_A          327 YSVSREAAKALEEAASEVLDRTGLPYTI------------------NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLH  388 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEE------------------EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcEEE------------------EEeeeEEEEEEeCCCcccchhccccCHHHHHHHH
Confidence            566667777777777653    211111                  1256788998754             23456788


Q ss_pred             ccCCcceeecccC
Q 019543          270 ETTKYFSITVSFG  282 (339)
Q Consensus       270 ~~L~~~~i~v~~G  282 (339)
                      +.|.+.|+.++.|
T Consensus       389 ~~l~~~Gv~v~~~  401 (434)
T 2epj_A          389 EEMLRRGVFIAPS  401 (434)
T ss_dssp             HHHHHTTEECCSS
T ss_pred             HHHHHCCeEEecc
Confidence            8887778876644

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.55  E-value=2.1e-14  Score=137.73  Aligned_cols=206  Identities=14%  Similarity=0.121  Sum_probs=130.1

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHH-hc--CCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH-LL--GTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~-ll--~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++...+|++++++++ +.+.+++++||++|+..++. +.  .++++|++.++.|++..                     
T Consensus        91 ~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~  170 (429)
T 3k28_A           91 PTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPG  170 (429)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCC
Confidence            4678889999999998 56789999999999985443 32  36788888776654210                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR  138 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~  138 (339)
                                           ..+.                            ++|.++|++||++||+||+|.....+.
T Consensus       171 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~  250 (429)
T 3k28_A          171 VPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAY  250 (429)
T ss_dssp             CCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSST
T ss_pred             CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCc
Confidence                                 1111                            889999999999999999995211111


Q ss_pred             c-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---hcCCCCChHHHHHHHhchhhH-HHHHHH
Q 019543          139 P-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWICLRGVKTM-ALRVEK  209 (339)
Q Consensus       139 ~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---~~~~~~~~~~a~~~~~~l~~~-~~r~~~  209 (339)
                      .     .....|++  |+||++++ | ...|++++++ ++++.+.....   ..+...+++.++.++..++.+ +...++
T Consensus       251 ~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~  325 (429)
T 3k28_A          251 NCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKA-EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVE  325 (429)
T ss_dssp             THHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             chHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcH-HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            1     12234554  68899985 4 4567887764 66665543221   123456777666665555432 455666


Q ss_pred             HHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-------------CHHHHHHHHccC
Q 019543          210 QQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------------SLALSKHVVETT  272 (339)
Q Consensus       210 ~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-------------~~~~~~~~~~~L  272 (339)
                      .+++.+++.+.|++.    +.+..+                  ++.+.++++.+.             +...+.++.+.|
T Consensus       326 ~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  387 (429)
T 3k28_A          326 FERKAEMLEAGLRKAAEKHGIPHHI------------------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREM  387 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCEE------------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCEEE------------------EeeccEEEEEEecCCcccccccccccHHHHHHHHHHH
Confidence            667777777777653    322111                  224667777652             233356777777


Q ss_pred             Ccceeeccc
Q 019543          273 KYFSITVSF  281 (339)
Q Consensus       273 ~~~~i~v~~  281 (339)
                      ...|+.++.
T Consensus       388 ~~~Gv~v~~  396 (429)
T 3k28_A          388 VEQGVFLPP  396 (429)
T ss_dssp             HHTTEECCS
T ss_pred             HHCCeEEec
Confidence            777776654

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.55  E-value=1.6e-13  Score=134.45  Aligned_cols=175  Identities=11%  Similarity=0.109  Sum_probs=113.0

Q ss_pred             CCchHHHHHHH----HHhHhCCC----eEEEcCcHHHHHHHHH-Hhc--------CCC-----C-EEEEcCCCccchHHH
Q 019543           53 GNPTRDALESL----LAKLDKAD----RALCFTSGMAALAAVT-HLL--------GTG-----E-EIVAGDDLYGGTDRL  109 (339)
Q Consensus        53 ~~~~~~~le~~----la~~~g~~----~~l~~~sG~~A~~~il-~ll--------~~G-----D-~Vi~~~~~y~~~~~~  109 (339)
                      .+|...++|+.    +++++|.+    .++++++|++|+..++ .+.        ++|     | +|++++..|......
T Consensus       126 ~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~  205 (504)
T 2okj_A          126 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA  205 (504)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHH
Confidence            44666666655    48888864    5778888899987533 332        257     7 788887655433211


Q ss_pred             HH---------------------------------------------------------HHHHHHHHHcCCEEEEeCCcC
Q 019543          110 LS---------------------------------------------------------RKIAEMAHAHGALLLVDNSIM  132 (339)
Q Consensus       110 ~~---------------------------------------------------------~~I~~la~~~g~~livD~a~a  132 (339)
                      +.                                                         ++|+++|++||+++++|++|+
T Consensus       206 ~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~  285 (504)
T 2okj_A          206 GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWG  285 (504)
T ss_dssp             HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred             HHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhh
Confidence            10                                                         999999999999999999998


Q ss_pred             CCCCc-----Cccc--CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HHhc-CCC----------------
Q 019543          133 SPVLS-----RPLE--LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAE-GSG----------------  187 (339)
Q Consensus       133 ~g~~~-----~~~~--~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~~-~~~----------------  187 (339)
                      .+...     ..+.  .++|+++.|++|+++++.  .+|+++++++++....... ..+. +..                
T Consensus       286 ~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (504)
T 2okj_A          286 GGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC  363 (504)
T ss_dssp             GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCS
T ss_pred             hHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCC
Confidence            76542     1122  268999999999999663  3578888764454432111 1111 110                


Q ss_pred             ---CChHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          188 ---LAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       188 ---~~~~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                         ......+.++..+  +.+.++.++..++++++.+.|++.++++.
T Consensus       364 ~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~  410 (504)
T 2okj_A          364 GRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM  410 (504)
T ss_dssp             SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred             CCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence               1233333333333  44566777888999999999999888754

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.55  E-value=8e-13  Score=126.19  Aligned_cols=163  Identities=15%  Similarity=0.084  Sum_probs=100.9

Q ss_pred             HHHHHHHHhHh-C---C----Ce--EEEcCcHHHHHHHHH-HhcC--CCCEEEEcCCCccchHHHHH-------------
Q 019543           58 DALESLLAKLD-K---A----DR--ALCFTSGMAALAAVT-HLLG--TGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        58 ~~le~~la~~~-g---~----~~--~l~~~sG~~A~~~il-~ll~--~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      .+|++.+++++ +   .    ++  .+++++|+.|+..++ .++.  | |+|++++|.|......++             
T Consensus        75 ~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~  153 (405)
T 3k7y_A           75 EDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFD  153 (405)
T ss_dssp             HHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEE
T ss_pred             HHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccc
Confidence            45666666554 2   1    22  467777789997544 4555  8 999999999877654433             


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC------cc--
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR------PL--  140 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~------~~--  140 (339)
                                                                 ++|+++|++||++||+|++|.......      ++  
T Consensus       154 ~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~  233 (405)
T 3k7y_A          154 YNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK  233 (405)
T ss_dssp             TTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred             cccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence                                                       889999999999999999996433321      11  


Q ss_pred             --cC-CCeEEEeccccccccCCCceEEEEE--EcChhHHHHHHH-H---HHhcCCCCChHHHHHHHhch----------h
Q 019543          141 --EL-GADIVMHSATKFIAGHSDVMAGVLA--VKGERLAKELYF-L---QNAEGSGLAPFDCWICLRGV----------K  201 (339)
Q Consensus       141 --~~-~~Di~~~S~sK~l~g~~~~~gG~v~--~~~~~l~~~l~~-~---~~~~~~~~~~~~a~~~~~~l----------~  201 (339)
                        .. .--|++.||||.++.+|.++| +++  ..++++.+.+.. +   .+......+.+.+.++...+          +
T Consensus       234 ~~~~~~~~i~~~S~SK~~~l~GlRiG-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~  312 (405)
T 3k7y_A          234 FEEKNIAFSVCQSFSKNMSLYGERAG-ALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIK  312 (405)
T ss_dssp             HHTTTCCEEEEEECTTTSCCTTTTEE-EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHhcCCcEEEEeeCCccCCCccccce-EEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHH
Confidence              11 124888999999998776655 553  345556555532 2   22112222333332222222          2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 019543          202 TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       202 ~~~~r~~~~~~~a~~l~~~L~  222 (339)
                      .+...+++..++.+.+.+.|+
T Consensus       313 ~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          313 ELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            233445556777888888888

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.54  E-value=3.7e-14  Score=135.99  Aligned_cols=207  Identities=13%  Similarity=0.118  Sum_probs=131.1

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHH--------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDR--------------------  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~--------------------  108 (339)
                      .++...+|++++++++ +.+.+++++||++|+..++.   ...+++.|++.++.|++...                    
T Consensus        91 ~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  170 (429)
T 4e77_A           91 PTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPG  170 (429)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTT
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCC
Confidence            4678899999999998 56789999999999975443   23466788887666654321                    


Q ss_pred             ----------------------HHH----------------------------HHHHHHHHHcCCEEEEeCCcC---CCC
Q 019543          109 ----------------------LLS----------------------------RKIAEMAHAHGALLLVDNSIM---SPV  135 (339)
Q Consensus       109 ----------------------~~~----------------------------~~I~~la~~~g~~livD~a~a---~g~  135 (339)
                                            .+.                            ++|.++|++||++||+||+|+   .|.
T Consensus       171 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~  250 (429)
T 4e77_A          171 VPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL  250 (429)
T ss_dssp             SCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT
T ss_pred             CCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc
Confidence                                  110                            889999999999999999997   221


Q ss_pred             Cc--CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH---HhcCCCCChHHHHHHHhchhhH--HHHHH
Q 019543          136 LS--RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ---NAEGSGLAPFDCWICLRGVKTM--ALRVE  208 (339)
Q Consensus       136 ~~--~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~---~~~~~~~~~~~a~~~~~~l~~~--~~r~~  208 (339)
                      ..  .......|++  |+||.+++ | ..+|++++++ ++++.+....   ...+...+++.++.+...|+.+  +...+
T Consensus       251 ~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~-~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  325 (429)
T 4e77_A          251 AGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRR-EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE  325 (429)
T ss_dssp             TCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECH-HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             chHHHhcCCCCCee--eecccccC-C-CCeEEEEECH-HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence            11  1112234664  78999994 4 4567887764 6666554321   1123467787777666666543  34455


Q ss_pred             HHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--------------HHHHHHHc
Q 019543          209 KQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--------------ALSKHVVE  270 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--------------~~~~~~~~  270 (339)
                      +.+++.+++.+.|++.    +.+..                  .++.|.++++.+.+.              ..+.++.+
T Consensus       326 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (429)
T 4e77_A          326 TLTELTDSLATGLRHAAKEENIPLV------------------VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFH  387 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceE------------------EEEeeeEEEEEEccCcccccccccccccHHHHHHHHH
Confidence            5666666676666542    22111                  123467777776432              34467777


Q ss_pred             cCCcceeecccC
Q 019543          271 TTKYFSITVSFG  282 (339)
Q Consensus       271 ~L~~~~i~v~~G  282 (339)
                      .|...|+.++.+
T Consensus       388 ~l~~~Gi~v~~~  399 (429)
T 4e77_A          388 LMLEEGVYLAPS  399 (429)
T ss_dssp             HHHHTTEECCSS
T ss_pred             HHHHCCeEEeec
Confidence            777778776643

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.50  E-value=4.3e-13  Score=128.32  Aligned_cols=205  Identities=18%  Similarity=0.134  Sum_probs=134.4

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++..++|++++++++ +.+.+++++||++|+.+++.   .+.++|.|++.++.|++..                     
T Consensus        90 ~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g  169 (424)
T 2e7u_A           90 PSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAG  169 (424)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTT
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCC
Confidence            4677899999999999 67889999999999975443   2445677888787765410                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S  137 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~  137 (339)
                                           ..+.                            ++|.++ ++||++||+||+|+ |.. +
T Consensus       170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g  247 (424)
T 2e7u_A          170 VPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLA  247 (424)
T ss_dssp             CCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSS
T ss_pred             CCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccc
Confidence                                 0110                            889999 99999999999997 331 1


Q ss_pred             Cc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hc-CCCCChHHHHHHHhchhhH---HHH
Q 019543          138 RP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AE-GSGLAPFDCWICLRGVKTM---ALR  206 (339)
Q Consensus       138 ~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~-~~~~~~~~a~~~~~~l~~~---~~r  206 (339)
                      ..     .....|++  |+||++++ | ..+|++++++ ++++.+.....  .. +...+|+.++++...++.+   +..
T Consensus       248 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~  322 (424)
T 2e7u_A          248 FGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRR-EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGY  322 (424)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECH-HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHH
T ss_pred             hhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcH-HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence            11     12235765  88999995 4 4577888764 66665543111  11 2356777766666666554   335


Q ss_pred             HHHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------HHHHHHHH
Q 019543          207 VEKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVV  269 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------~~~~~~~~  269 (339)
                      .++..++.+++.+.|++.    +.+..+                  ++.|.+++|.+.+             ...+.++.
T Consensus       323 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  384 (424)
T 2e7u_A          323 YAYLEDLGARLEAGLKEVLKEKGLPHTV------------------NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFF  384 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEE------------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEE------------------EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence            666677778888877653    221111                  1256788988743             23456788


Q ss_pred             ccCCcceeecccC
Q 019543          270 ETTKYFSITVSFG  282 (339)
Q Consensus       270 ~~L~~~~i~v~~G  282 (339)
                      +.|.+.|+.++.|
T Consensus       385 ~~l~~~Gv~v~~~  397 (424)
T 2e7u_A          385 HGLLDRGIYWPPS  397 (424)
T ss_dssp             HHHHTTTEECCSS
T ss_pred             HHHHHCCeEEecc
Confidence            8777778876643

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.50  E-value=3.4e-13  Score=130.26  Aligned_cols=203  Identities=16%  Similarity=0.121  Sum_probs=126.3

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH-----------------H---
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD-----------------R---  108 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~-----------------~---  108 (339)
                      ..+..+++.+++++.+ +.+.+++++||++|+.+++.+   +.++|+|++.++.|++..                 .   
T Consensus        95 ~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~  174 (453)
T 2cy8_A           95 SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLP  174 (453)
T ss_dssp             SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC---------------------------
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCc
Confidence            4556677777777776 677899999999999854433   444567777777776310                 0   


Q ss_pred             -------------------HHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCc-
Q 019543          109 -------------------LLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRP-  139 (339)
Q Consensus       109 -------------------~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~-  139 (339)
                                         .+.                            ++|.++|++||++||+||+|+ |.. +.. 
T Consensus       175 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~  253 (453)
T 2cy8_A          175 ETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHG  253 (453)
T ss_dssp             -CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTH
T ss_pred             cccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchh
Confidence                               010                            889999999999999999997 331 111 


Q ss_pred             ----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH---H--HHhcCCCCChHHHHHHHhchhh-H-HHHHH
Q 019543          140 ----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF---L--QNAEGSGLAPFDCWICLRGVKT-M-ALRVE  208 (339)
Q Consensus       140 ----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~---~--~~~~~~~~~~~~a~~~~~~l~~-~-~~r~~  208 (339)
                          .....|++  |+||++++ | ..+|++++++ ++++.+..   .  ....+...+|+.++++...|+. + +...+
T Consensus       254 ~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~-~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~  328 (453)
T 2cy8_A          254 MQALLDVQPDLT--CLAKASAG-G-LPGGILGGRE-DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA  328 (453)
T ss_dssp             HHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECH-HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhHHhCCCCcEE--EEChhhhC-C-cceEEEechH-HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence                12235765  78999996 3 4578888874 66665543   1  1112345678777766666665 3 34456


Q ss_pred             HHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------------HHHH
Q 019543          209 KQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------------LALS  265 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------------~~~~  265 (339)
                      +..++.+++.+.|++.    +.+..  .                ++.|.+++|.+.+                   ....
T Consensus       329 ~~~~~~~~l~~~L~~~~~~~~~~~~--~----------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (453)
T 2cy8_A          329 KINDLGQFAREAMNHLFARKGLNWL--A----------------YGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI  390 (453)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEE--E----------------ECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEE--E----------------EEeeeEEEEEEeccccccccccccccccccccHHHH
Confidence            6667777777777653    22111  1                2356789998753                   2235


Q ss_pred             HHHHccCCcceeec
Q 019543          266 KHVVETTKYFSITV  279 (339)
Q Consensus       266 ~~~~~~L~~~~i~v  279 (339)
                      .+|.+.|...|+.+
T Consensus       391 ~~l~~~l~~~Gv~v  404 (453)
T 2cy8_A          391 AAMRMALILEGVDI  404 (453)
T ss_dssp             HHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHCCeEE
Confidence            66777776667655

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.50  E-value=1.7e-12  Score=127.53  Aligned_cols=170  Identities=16%  Similarity=0.167  Sum_probs=109.3

Q ss_pred             HHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhc--------C-CCC------EEEEcCCCccchHHHHH---------
Q 019543           58 DALESLLAKLDKAD--RALCFTSGMAALAAVTHLL--------G-TGE------EIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        58 ~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll--------~-~GD------~Vi~~~~~y~~~~~~~~---------  111 (339)
                      +++.+++++++|.+  .+++++||++|+...+..+        + +||      +|++++..|......+.         
T Consensus       151 ~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v  230 (515)
T 2jis_A          151 EEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSV  230 (515)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred             HHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcE
Confidence            34455688899875  6788888899987543322        2 586      88888765543321110         


Q ss_pred             ------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----
Q 019543          112 ------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----  139 (339)
Q Consensus       112 ------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----  139 (339)
                                                                      ++|.++|++||+++++|++|+.+....+    
T Consensus       231 ~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~  310 (515)
T 2jis_A          231 RVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH  310 (515)
T ss_dssp             EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHh
Confidence                                                            9999999999999999999987654321    


Q ss_pred             -c-cC-CCeEEEeccccccccCCCceEEEEEEcCh-hHHHHHHH-HHH-hcCC-------------------CCChHHHH
Q 019543          140 -L-EL-GADIVMHSATKFIAGHSDVMAGVLAVKGE-RLAKELYF-LQN-AEGS-------------------GLAPFDCW  194 (339)
Q Consensus       140 -~-~~-~~Di~~~S~sK~l~g~~~~~gG~v~~~~~-~l~~~l~~-~~~-~~~~-------------------~~~~~~a~  194 (339)
                       + .. ++|++++|++|+++++.+  .|+++++++ .+.+.... ... ..+.                   ....+..+
T Consensus       311 ~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~  388 (515)
T 2jis_A          311 LLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLW  388 (515)
T ss_dssp             GGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHH
T ss_pred             hcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHH
Confidence             2 22 689999999999986643  478888765 35443211 000 1010                   01122233


Q ss_pred             HHHhch--hhHHHHHHHHHHHHHHHHHHHhCCCCceE
Q 019543          195 ICLRGV--KTMALRVEKQQDNAQKIAEFLASHPRVKK  229 (339)
Q Consensus       195 ~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~~~i~~  229 (339)
                      .+++.+  +.+....++..++++++.+.|++.++++.
T Consensus       389 ~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~  425 (515)
T 2jis_A          389 LMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFEL  425 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            333322  34566677788899999999999888754

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.49  E-value=1.5e-13  Score=131.51  Aligned_cols=205  Identities=14%  Similarity=0.155  Sum_probs=128.0

Q ss_pred             CCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchH---------------------
Q 019543           53 GNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      .++...+|++++++++ +.+.+++++||++|+.+++.   ....+++|++.++.|++..                     
T Consensus        90 ~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  169 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG  169 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCC
Confidence            5678899999999998 46788999999999985442   2334578888777665310                     


Q ss_pred             ---------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCC-Cc
Q 019543          108 ---------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPV-LS  137 (339)
Q Consensus       108 ---------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~-~~  137 (339)
                                           ..+.                            ++|.++|++||++||+||+|+ +. .+
T Consensus       170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~~~g  248 (427)
T 3fq8_A          170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GFRIA  248 (427)
T ss_dssp             SCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BTTTB
T ss_pred             CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccC
Confidence                                 1111                            899999999999999999996 22 11


Q ss_pred             C-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH-hc--CCCCChHHHHHHHhchhhH--HHHH
Q 019543          138 R-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN-AE--GSGLAPFDCWICLRGVKTM--ALRV  207 (339)
Q Consensus       138 ~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-~~--~~~~~~~~a~~~~~~l~~~--~~r~  207 (339)
                      .     ......|+  .|+||++++ | ..+|+++++ +++++.+..... ..  +...+++.++.+...++.+  +...
T Consensus       249 ~~~~~~~~~~~~di--~t~sK~~~~-G-~~~G~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~  323 (427)
T 3fq8_A          249 YGGVQEKFGVTPDL--TTLGKIIGG-G-LPVGAYGGK-REIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTY  323 (427)
T ss_dssp             TTHHHHHTTCCCSE--EEECGGGGT-T-SSCEEEEEC-HHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred             cchhhHhcCCCCCh--hhhhhhhhC-C-cceEEEEEc-HHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHH
Confidence            1     11223465  577899994 4 456788776 466665543211 12  2345777766666666543  3345


Q ss_pred             HHHHHHHHHHHHHHhCC----CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------HHHHHHHHc
Q 019543          208 EKQQDNAQKIAEFLASH----PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVE  270 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~----~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------~~~~~~~~~  270 (339)
                      ++.+++.+++.+.|++.    +....                  .++.+.+++|.+.+             .+...++.+
T Consensus       324 ~~~~~~~~~~~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (427)
T 3fq8_A          324 EYLDQITKRLSDGLLAIAQETGHAAC------------------GGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHR  385 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeE------------------EEEeeeEEEEEEecCccccccccccccHHHHHHHHH
Confidence            55666666666666542    21110                  12245677776522             223456777


Q ss_pred             cCCcceeeccc
Q 019543          271 TTKYFSITVSF  281 (339)
Q Consensus       271 ~L~~~~i~v~~  281 (339)
                      .|...|+.++.
T Consensus       386 ~l~~~Gi~v~~  396 (427)
T 3fq8_A          386 GMLEQGIYLAP  396 (427)
T ss_dssp             HHHHTTEECCS
T ss_pred             HHHHCCcEEec
Confidence            77667776653

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.46  E-value=1.1e-12  Score=127.55  Aligned_cols=167  Identities=14%  Similarity=0.173  Sum_probs=102.3

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc--c-cCC----CeEEEeccccc-cccCCCceEEEEEEcChhHHHHHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP--L-ELG----ADIVMHSATKF-IAGHSDVMAGVLAVKGERLAKELYFLQN  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~--~-~~~----~Di~~~S~sK~-l~g~~~~~gG~v~~~~~~l~~~l~~~~~  182 (339)
                      ++|.++|++||+++|+||+|. .|..+..  . ..+    .|++  ||||+ ++      ||+++ + +++. .+... .
T Consensus       282 ~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~-~~~~-~~~~~-~  349 (472)
T 1ohv_A          282 RKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-K-EEFR-PNAPY-R  349 (472)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-C-GGGS-CSSSS-S
T ss_pred             HHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-c-hhhc-ccccc-c
Confidence            899999999999999999996 3332221  1 123    5765  68899 55      47776 4 3442 11111 1


Q ss_pred             hcC-CCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHhCC----CC-ceEEecCCCCCCCchHhHhhhcCCCcce
Q 019543          183 AEG-SGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAEFLASH----PR-VKKVNYAGLPEHPGHELHYSQAKGAGSV  254 (339)
Q Consensus       183 ~~~-~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~~L~~~----~~-i~~v~~p~~~~~~~~~~~~~~~~~~~~i  254 (339)
                      ..+ ...+|..++.+...|+.+.  ...++.+++.+++.+.|+++    |. +..+                  ++.|.+
T Consensus       350 ~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~------------------~~~g~~  411 (472)
T 1ohv_A          350 IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV------------------RGRGTF  411 (472)
T ss_dssp             SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE------------------EEETTE
T ss_pred             ccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEee------------------cCCceE
Confidence            123 3457776666666665442  23455566667777776643    21 2111                  235678


Q ss_pred             EEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          255 LSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       255 vs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      ++|.+.+.....+|++.|.+.|+.+..+                           ..+.|||++++.++++.|+.+.++|
T Consensus       412 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~iRi~~~~~~t~e~i~~~~~~l  464 (472)
T 1ohv_A          412 CSFDTPDESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFRDHHAHLFLNIF  464 (472)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             EEEEeCChhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            8888866555667888776666654321                           1368999999887777776666666


Q ss_pred             h
Q 019543          335 R  335 (339)
Q Consensus       335 ~  335 (339)
                      +
T Consensus       465 ~  465 (472)
T 1ohv_A          465 S  465 (472)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.44  E-value=3.1e-12  Score=126.67  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             CeEEEcCcHHHHHHHHHH------hcCCCCEEEEcCCCccchHHHHH---------------------------------
Q 019543           71 DRALCFTSGMAALAAVTH------LLGTGEEIVAGDDLYGGTDRLLS---------------------------------  111 (339)
Q Consensus        71 ~~~l~~~sG~~A~~~il~------ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------  111 (339)
                      +++++++++++|+..++.      +++|||+|++++|.|.+......                                 
T Consensus       166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~  245 (546)
T 2zy4_A          166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPA  245 (546)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTT
T ss_pred             ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCC
Confidence            345566666888875443      47899999999998876653211                                 


Q ss_pred             ----------------------HHHHHHH--HHcCCEEEEeCCcCCCCCc--Cccc--CCCeEEEeccccccccCCCceE
Q 019543          112 ----------------------RKIAEMA--HAHGALLLVDNSIMSPVLS--RPLE--LGADIVMHSATKFIAGHSDVMA  163 (339)
Q Consensus       112 ----------------------~~I~~la--~~~g~~livD~a~a~g~~~--~~~~--~~~Di~~~S~sK~l~g~~~~~g  163 (339)
                                            ++|+++|  ++||++||+|++|+.....  ....  .+.+|++.||||.+|.+|. +.
T Consensus       246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl-Ri  324 (546)
T 2zy4_A          246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW-RL  324 (546)
T ss_dssp             EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG-CE
T ss_pred             CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc-ce
Confidence                                  7789998  7899999999999754321  1111  1457999999999986664 56


Q ss_pred             EEEEEcChhHHHHH
Q 019543          164 GVLAVKGERLAKEL  177 (339)
Q Consensus       164 G~v~~~~~~l~~~l  177 (339)
                      |+++++++++++.+
T Consensus       325 G~~~~~~~~l~~~l  338 (546)
T 2zy4_A          325 GVVAAHQQNVFDLA  338 (546)
T ss_dssp             EEEEEESSCHHHHH
T ss_pred             EEEEECCHHHHHHH
Confidence            78888764466655

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.44  E-value=1.4e-12  Score=132.07  Aligned_cols=167  Identities=15%  Similarity=0.068  Sum_probs=115.5

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcH-HHHHHH-HHHhcCCCCEEEEcCCCccch--------------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSG-MAALAA-VTHLLGTGEEIVAGDDLYGGT--------------------------  106 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG-~~A~~~-il~ll~~GD~Vi~~~~~y~~~--------------------------  106 (339)
                      ..+.++|+.+|+++|+++++++++| ++||.+ +.++++|||+|+++++.|...                          
T Consensus       195 g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~~  274 (715)
T 3n75_A          195 GPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGG  274 (715)
T ss_dssp             THHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBCC
T ss_pred             HHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccccC
Confidence            4689999999999999999999999 588875 556899999999987754211                          


Q ss_pred             -------HH----HHH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-c------CcccCC
Q 019543          107 -------DR----LLS-------------------------RKIAEMAHAHGALLLVDNSIMSPVL-S------RPLELG  143 (339)
Q Consensus       107 -------~~----~~~-------------------------~~I~~la~~~g~~livD~a~a~g~~-~------~~~~~~  143 (339)
                             ..    .+.                         ++|.++|++++  +++|+||+.+.. .      ..+..+
T Consensus       275 i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~g  352 (715)
T 3n75_A          275 IPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGG  352 (715)
T ss_dssp             CCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSSS
T ss_pred             cccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccccccccccC
Confidence                   11    110                         88999997664  799999987642 1      122223


Q ss_pred             --CeEE---EeccccccccCCCceEEEEEEcChhHHHHHHHHHHh-cCCCCChHHHHHHHhc---hh--hHHHHHHHHHH
Q 019543          144 --ADIV---MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA-EGSGLAPFDCWICLRG---VK--TMALRVEKQQD  212 (339)
Q Consensus       144 --~Di~---~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~-~~~~~~~~~a~~~~~~---l~--~~~~r~~~~~~  212 (339)
                        +|++   ++|+||+++++  ..||++.++++....++...... .++.+++...+.+..+   ++  .-.+++++..+
T Consensus       353 ~~aD~vii~~~S~hKtL~gl--tqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~  430 (715)
T 3n75_A          353 RVEGKVIYETQSTHKLLAAF--SQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIE  430 (715)
T ss_dssp             CCTTCEEEEEECHHHHSSCC--TTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEecccccccCC--CCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence              5765   89999999965  35788888764223344444443 4566666544333323   33  23556788889


Q ss_pred             HHHHHHHHHhCCC
Q 019543          213 NAQKIAEFLASHP  225 (339)
Q Consensus       213 ~a~~l~~~L~~~~  225 (339)
                      +++++++.|++++
T Consensus       431 ~a~~~r~~L~~i~  443 (715)
T 3n75_A          431 RAIKFRKEIKRLR  443 (715)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888765

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.43  E-value=3.7e-12  Score=120.20  Aligned_cols=235  Identities=14%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEc--CcHHHHHHH-HHHhcCC--CCEEEEcCCCccchHH--HHH--------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCF--TSGMAALAA-VTHLLGT--GEEIVAGDDLYGGTDR--LLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~--~sG~~A~~~-il~ll~~--GD~Vi~~~~~y~~~~~--~~~--------------  111 (339)
                      ...++.++.+++++|++  +-++|  .||+.++.+ +..++.+  ||+|++....+.+...  ..+              
T Consensus        58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~  137 (377)
T 3e77_A           58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS  137 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC
Confidence            45678889999999975  33444  467999875 4557655  9998776543333211  111              


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCC
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHS  159 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~  159 (339)
                                                     .-|  +|+++|+++++|.+++.|.. .+...+  |++++|.+|++|++|
T Consensus       138 ~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi--i~~~~~~~~~vD~~q~~g~~~id~~~~--~~~~~s~~K~~gp~G  213 (377)
T 3e77_A          138 YTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF--IPDVKGAVLVCDMSSNFLSKPVDVSKF--GVIFAGAQKNVGSAG  213 (377)
T ss_dssp             SCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS--CCCCTTCCEEEECTTTTTSSCCCGGGC--SEEEEEGGGTTSCTT
T ss_pred             cCCCCChHHhccCCCccEEEEeCccCchheEchh--hhccCCCEEEEEcccccCCCCCchhhc--CEEEEecccccCCCc
Confidence                                           223  57889999999999998864 233333  478899999996433


Q ss_pred             CceEEEEEEcChhHHHHH----------HHHHH-hcCCCCChHH-HHHHHhchh------hHHHHHHHHHHHHHHHHHHH
Q 019543          160 DVMAGVLAVKGERLAKEL----------YFLQN-AEGSGLAPFD-CWICLRGVK------TMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l----------~~~~~-~~~~~~~~~~-a~~~~~~l~------~~~~r~~~~~~~a~~l~~~L  221 (339)
                         .|+++.+++ +.+++          ..... ......++.. .+.+..+++      -++.+.++..+.++++.+.|
T Consensus       214 ---~g~l~~~~~-~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L  289 (377)
T 3e77_A          214 ---VTVVIVRDD-LLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEII  289 (377)
T ss_dssp             ---CEEEEEETT-SCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cEEEEEcHH-HHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence               356766653 22111          11111 1111223322 222222222      24556666778889999999


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCc-ceEEEeeCC----HHHHHHHHccCCcceeecccCCcccceeccccccC
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAG-SVLSFLTGS----LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~-~ivs~~~~~----~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      ++.+++..  .|.   ++.         ..+ .+++|.+++    .+-...|.+.+...|+.+..|.             
T Consensus       290 ~~~~g~~~--~~~---~~~---------~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~-------------  342 (377)
T 3e77_A          290 DNSQGFYV--CPV---EPQ---------NRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGH-------------  342 (377)
T ss_dssp             HTSTTSEE--CCS---CGG---------GBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCC-------------
T ss_pred             HhcCCcee--cCC---CHH---------HcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCC-------------
Confidence            99887642  221   111         133 469998864    2222457776666777665432             


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .            ..+.+|+|++..++++.|+.|.++|++
T Consensus       343 ~------------~~g~iRiS~~~~~t~edId~l~~al~~  370 (377)
T 3e77_A          343 R------------SVGGIRASLYNAVTIEDVQKLAAFMKK  370 (377)
T ss_dssp             T------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             C------------cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            0            124599999999888888888888875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.11  E-value=2.3e-14  Score=138.95  Aligned_cols=211  Identities=16%  Similarity=0.094  Sum_probs=135.6

Q ss_pred             CCCchHHHHHHHHHhHh-CCCeEEEcCcHHHHHHHHHHhc---CCCCEEEEcCCCccchHH-------------------
Q 019543           52 SGNPTRDALESLLAKLD-KADRALCFTSGMAALAAVTHLL---GTGEEIVAGDDLYGGTDR-------------------  108 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~-g~~~~l~~~sG~~A~~~il~ll---~~GD~Vi~~~~~y~~~~~-------------------  108 (339)
                      +.++...+|+++|++++ +.+.+++++||++|+.+++.++   ..+|+||+.+..|+|...                   
T Consensus       137 ~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~  216 (465)
T 2yky_A          137 TQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGV  216 (465)
Confidence            34677889999999999 6788999999999998655432   456889988877754110                   


Q ss_pred             ---------HH----H------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc-----cCCCeE
Q 019543          109 ---------LL----S------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL-----ELGADI  146 (339)
Q Consensus       109 ---------~~----~------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~-----~~~~Di  146 (339)
                               .+    .                        ++|.++|++||++||+||+|. +..+...     ....|+
T Consensus       217 ~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi  295 (465)
T 2yky_A          217 YNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADL  295 (465)
Confidence                     00    0                        889999999999999999998 5322211     112354


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHH--H---HhcCCCCChHHHHHHHhchhhHH--HHHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL--Q---NAEGSGLAPFDCWICLRGVKTMA--LRVEKQQDNAQKIAE  219 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~--~---~~~~~~~~~~~a~~~~~~l~~~~--~r~~~~~~~a~~l~~  219 (339)
                        .||+|++++ | ...|++++++ ++++.+...  .   ...+...+|+.+++++..|+.+.  ...++.+++.+++.+
T Consensus       296 --~t~sK~lg~-G-~piG~v~~~~-~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~  370 (465)
T 2yky_A          296 --TTLGKYIGG-G-MSFGAFGGRR-DLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA  370 (465)
Confidence              479999996 4 4567887775 677777651  1   12334566776666666665442  345555666777777


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-H------------HHHHHHHccCCcceeecccC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-L------------ALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~------------~~~~~~~~~L~~~~i~v~~G  282 (339)
                      .|++...    .++. ..         ..++.|.+++|.+.+ .            +...+|.+.|.+.|+.+..+
T Consensus       371 ~L~~~~~----~~~~-~~---------~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~  432 (465)
T 2yky_A          371 NLNRIAV----ENQA-PL---------QFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPR  432 (465)
Confidence            7765410    0110 00         013567889987753 1            12456777777777765533

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.31  E-value=8.2e-11  Score=112.63  Aligned_cols=113  Identities=13%  Similarity=0.035  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhHh-CC------CeEEEcCcHHHHHHH-H--H-H-hcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           57 RDALESLLAKLD-KA------DRALCFTSGMAALAA-V--T-H-LLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        57 ~~~le~~la~~~-g~------~~~l~~~sG~~A~~~-i--l-~-ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ..+|++.++++. |.      ...+.+.+|+.|+.. +  + . ++.|||+|++++|.|+....+++             
T Consensus        89 ~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~  168 (420)
T 4h51_A           89 YQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYY  168 (420)
T ss_dssp             CHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECE
T ss_pred             hHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccc
Confidence            346677777653 32      124457788888752 2  2 2 46799999999999987655443             


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c---
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L---  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~---  140 (339)
                                                                  ++|+++|+++++++++|++|....+++.    .   
T Consensus       169 ~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~  248 (420)
T 4h51_A          169 DPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAAR  248 (420)
T ss_dssp             EGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred             cccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHH
Confidence                                                        8999999999999999999964333211    0   


Q ss_pred             ---cC-CCeEEEeccccccccCCCceEEEEEEcC
Q 019543          141 ---EL-GADIVMHSATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       141 ---~~-~~Di~~~S~sK~l~g~~~~~gG~v~~~~  170 (339)
                         .. ..-+++.||||.++.+|+++| ++++..
T Consensus       249 ~~~~~~~~~i~~~s~SK~~~~~G~RvG-~~~~~~  281 (420)
T 4h51_A          249 LFARRGIEVLLAQSFSKNMGLYSERAG-TLSLLL  281 (420)
T ss_dssp             HHHHTTCCCEEEEECTTTSCCGGGCEE-EEEEEC
T ss_pred             hHHhhCceEEEEeccccccccccCceE-EEEecc
Confidence               11 123888999999998887665 555443

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.30  E-value=8.2e-11  Score=111.42  Aligned_cols=236  Identities=13%  Similarity=0.061  Sum_probs=135.5

Q ss_pred             CchHHHHHHHHHhHhCCC--e-EEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------------------
Q 019543           54 NPTRDALESLLAKLDKAD--R-ALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~-~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------------------  107 (339)
                      ....++.++.+++++|++  + +++ ++||+.++.+ +..++++||+|++......+..                     
T Consensus        71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G~v~~v~~~~~~~  150 (386)
T 3qm2_A           71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKYCAPQIIDAKITVD  150 (386)
T ss_dssp             --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHhCCeEEEecCcccC
Confidence            456789999999999985  3 444 2577999875 5568899998754322111100                     


Q ss_pred             ------HHHH-----------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccccccc
Q 019543          108 ------RLLS-----------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       108 ------~~~~-----------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g  157 (339)
                            ..+.                       ..|.+++  +|+++++|.+++.|.. .+...+  |++++|.+|++| 
T Consensus       151 G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~pi~~i~--~g~~~~vDa~qs~g~~pidv~~~--~~~~~s~hK~lG-  225 (386)
T 3qm2_A          151 GKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDETPDFG--PEVVVTADFSSTILSAPLDVSRY--GVIYAGAQKNIG-  225 (386)
T ss_dssp             TEEEECCGGGCCCCTTCSCEEECSEETTTTEECCCCCCCC--TTCCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTC-
T ss_pred             CCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCchhhhc--CCCEEEEEcccccCCCCCCcccc--CEEEEecccccC-
Confidence                  0000                       1233444  7999999999998864 233333  467899999996 


Q ss_pred             CCCceEEEEEEcChhHHHHH----------HHHH---HhcCC-CCChHHHH-HHHhchhh---HHHHHHHHHHHHHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKEL----------YFLQ---NAEGS-GLAPFDCW-ICLRGVKT---MALRVEKQQDNAQKIAE  219 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l----------~~~~---~~~~~-~~~~~~a~-~~~~~l~~---~~~r~~~~~~~a~~l~~  219 (339)
                      |.+  .|+++.+++ +.+++          ....   ..+++ ..+.+.+. .++..+..   ++...++..+.++++.+
T Consensus       226 P~G--~g~l~v~~~-~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~  302 (386)
T 3qm2_A          226 PAG--LTLVIVRED-LLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYG  302 (386)
T ss_dssp             CTT--EEEEEEEGG-GCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCc--cEEEEECHH-HHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            433  467777653 21110          1110   11222 12222111 12222222   45555666677888999


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|++.+ +.  ..+.   ++.+       + ..++++|.+++......+...|+..||.+..|.      ++        
T Consensus       303 ~l~~~~-~~--~~~~---~~~~-------r-s~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~------~~--------  354 (386)
T 3qm2_A          303 VIDNSD-FY--RNDV---AQAN-------R-SRMNVPFQLADNTLDKVFLEESFAAGLHALKGH------RV--------  354 (386)
T ss_dssp             HHHTCS-SE--ECCB---CGGG-------B-CSSEEEEEESSGGGHHHHHHHHHHTTEECCBCC------TT--------
T ss_pred             HHHHCC-Cc--ccCC---CHHH-------c-CceEEEEECCCccccHHHHHHHHHCCCEEeCCC------CC--------
Confidence            998773 21  1111   1110       1 236899998642111466666777788765442      11        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                 .+.+|+|++..++++.|+.|.++|++
T Consensus       355 -----------~~~iRiS~~~~~t~edId~l~~~l~~  380 (386)
T 3qm2_A          355 -----------VGGMRASIYNAMPIEGVKALTDFMID  380 (386)
T ss_dssp             -----------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -----------cCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence                       13499999999888999999998875

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.26  E-value=1.5e-10  Score=108.71  Aligned_cols=231  Identities=12%  Similarity=-0.006  Sum_probs=138.5

Q ss_pred             chHHHHHHHHHhHhCCC---eEEE-cCcHHHHHHH-HHHhcCCCCEE--EEcCC---------------------Cccch
Q 019543           55 PTRDALESLLAKLDKAD---RALC-FTSGMAALAA-VTHLLGTGEEI--VAGDD---------------------LYGGT  106 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~---~~l~-~~sG~~A~~~-il~ll~~GD~V--i~~~~---------------------~y~~~  106 (339)
                      ...++.++.+++++|++   ++++ ++||+.|+.+ +..++ +||++  ++...                     ..++.
T Consensus        50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~  128 (361)
T 3m5u_A           50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESN  128 (361)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcC
Confidence            45678888999999984   3444 4566899875 45577 88854  33211                     00110


Q ss_pred             H------HHHH-------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCc
Q 019543          107 D------RLLS-------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       107 ~------~~~~-------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                      .      . +.                   +.   +++ +|+++++|.+++.|...-.+. ..|++++|.+|++| |.+ 
T Consensus       129 ~~~~~~~~-l~~~t~lv~~~~~e~~tG~~~~~---i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K~~g-p~G-  200 (361)
T 3m5u_A          129 FDHIPRVE-FSDNADYAYICSNNTIYGTQYQN---YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQKNAG-ISG-  200 (361)
T ss_dssp             SCSCCCCC-CCTTSSEEEEESEETTTTEECSS---CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTTTSS-CTT-
T ss_pred             CCcCChhh-cCCCCCEEEEeCCCCCcceeCCc---ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechhccC-CCc-
Confidence            0      0 11                   32   344 499999999998886421122 46999999999996 433 


Q ss_pred             eEEEEEEcChhHHHHHHH--------HHH----hcCCCCChHHH-HHHHhchh------hHHHHHHHHHHHHHHHHHHHh
Q 019543          162 MAGVLAVKGERLAKELYF--------LQN----AEGSGLAPFDC-WICLRGVK------TMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~--------~~~----~~~~~~~~~~a-~~~~~~l~------~~~~r~~~~~~~a~~l~~~L~  222 (339)
                       .|+++.++ ++.+.+..        +..    ......++... +.+..+++      .++.+.++..+.++++.+.|+
T Consensus       201 -~g~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~  278 (361)
T 3m5u_A          201 -LSCIFIRK-DMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID  278 (361)
T ss_dssp             -CEEEEEEH-HHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cEEEEEcH-HHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence             36777765 55555432        111    01112223222 21222222      145556666778889999999


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC---HHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS---LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~---~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      +++++..+..+     +.+       + ..++++|.+++   .+  ..+...|+..|+.++.|..               
T Consensus       279 ~~~g~~~~~~~-----~~~-------r-s~~ivsf~~~~~~~~~--~~~~~~L~~~gI~~~~g~~---------------  328 (361)
T 3m5u_A          279 LSNGFYKGHAD-----KKD-------R-SLMNVSFNIAKNKDLE--PLFVKEAEEAGMIGLKGHR---------------  328 (361)
T ss_dssp             TSTTSEEESSC-----GGG-------B-CSSEEEEEESSCTTHH--HHHHHHHHHTTEECCBCCT---------------
T ss_pred             HCCCeeeccCC-----HHH-------c-CCeEEEEECCCchhhh--HHHHHHHHHCCCEEecCCC---------------
Confidence            98865222111     100       1 24689999865   33  3567777777887654421               


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                ..+.+|+|++..++++.|+.+.++|++
T Consensus       329 ----------~~g~iRiS~~~~~t~edId~l~~al~~  355 (361)
T 3m5u_A          329 ----------ILGGIRASIYNALNLDQVKTLCEFMKE  355 (361)
T ss_dssp             ----------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ----------ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence                      113499999999888889999998875

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.26  E-value=1e-10  Score=113.05  Aligned_cols=234  Identities=19%  Similarity=0.206  Sum_probs=139.3

Q ss_pred             chHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHH--------------------
Q 019543           55 PTRDALESLLAKLDK---ADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDR--------------------  108 (339)
Q Consensus        55 ~~~~~le~~la~~~g---~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~--------------------  108 (339)
                      +...+|.++|.++..   .+.+.+++||+.|+...+.   .......|+.-...|+|...                    
T Consensus       107 ~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~  186 (456)
T 4atq_A          107 EGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFA  186 (456)
T ss_dssp             HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCcc
Confidence            344577788888875   3467888999999975432   33445677776666665310                    


Q ss_pred             ---------------------------HHH---------------------------------HHHHHHHHHcCCEEEEe
Q 019543          109 ---------------------------LLS---------------------------------RKIAEMAHAHGALLLVD  128 (339)
Q Consensus       109 ---------------------------~~~---------------------------------~~I~~la~~~g~~livD  128 (339)
                                                 .+.                                 ++|.++|++||+++|+|
T Consensus       187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D  266 (456)
T 4atq_A          187 PEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD  266 (456)
T ss_dssp             SSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE
T ss_pred             ccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec
Confidence                                       000                                 99999999999999999


Q ss_pred             CCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh
Q 019543          129 NSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT  202 (339)
Q Consensus       129 ~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~  202 (339)
                      |++. .|-.+.     ......||++  ++|.++|.  .-.|.+++++ ++.+.+.......+..-+|+.+++++..|+.
T Consensus       267 EV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg--~P~~av~~~~-~i~~~~~~~~~~~Tf~gnpla~aaala~L~~  341 (456)
T 4atq_A          267 EVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGG--LPLSAITGRA-DLLDAVHPGGLGGTYGGNPVACAAALAAIDT  341 (456)
T ss_dssp             CTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT--SSCEEEEEEH-HHHTTSCTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred             ccccccCCccccccccccCCCCchhh--hhhcccCc--CCceeeEecH-HHHhcccccCCCCCCCCChHHHHhhHHHHHH
Confidence            9983 222221     1223459876  57999864  3345566654 5555443222122345578888888777776


Q ss_pred             HHH--HHHHHHHHHHHHHHHHhCC---------CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-------CHHH
Q 019543          203 MAL--RVEKQQDNAQKIAEFLASH---------PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-------SLAL  264 (339)
Q Consensus       203 ~~~--r~~~~~~~a~~l~~~L~~~---------~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-------~~~~  264 (339)
                      +.+  ..++.++..+++.+.|+++         +.|..|                  +|.|.++.|++.       +.+.
T Consensus       342 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~V------------------RG~Gl~~giel~~~~~~~~~~~~  403 (456)
T 4atq_A          342 MEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDI------------------RGRGAMLAIELVQPGSKEPNAEL  403 (456)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEE------------------EEETTEEEEEEBCTTSCCBCHHH
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEe------------------eecceEEEEEEecCCCCCcCHHH
Confidence            532  2333334444454444432         222222                  356778888762       2234


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  336 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~~  336 (339)
                      +.++.+.+...|+.+...+                         ...+.|||+.-+    ++.++.++.|.++|++
T Consensus       404 ~~~v~~~~~~~Gvl~~~~g-------------------------~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          404 TKAVAAACLKEGVIILTCG-------------------------TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             HHHHHHHHHHTTEECEEEC-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEecC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            5677777777676543211                         123678887544    5556666777777764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.21  E-value=9e-11  Score=113.22  Aligned_cols=164  Identities=16%  Similarity=0.153  Sum_probs=104.5

Q ss_pred             CchHHHHHHHHHhHhC-CCeEEEcCcHHHHHHHHHHh---cCCCCEEEEcCCCccchH----------------------
Q 019543           54 NPTRDALESLLAKLDK-ADRALCFTSGMAALAAVTHL---LGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g-~~~~l~~~sG~~A~~~il~l---l~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      ++...+|++.|++++. .+.+.+++||++|+...+.+   ....+.|+.....|+|..                      
T Consensus       126 ~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n  205 (454)
T 4ao9_A          126 NLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN  205 (454)
T ss_dssp             ESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT
T ss_pred             cHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc
Confidence            3456678888888774 56788889999999754432   223467777666665431                      


Q ss_pred             ------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----ccCCCeEEE
Q 019543          108 ------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-----LELGADIVM  148 (339)
Q Consensus       108 ------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-----~~~~~Di~~  148 (339)
                            ..++                            ++|.++|++||++||+||++. |-.+..     .....|+++
T Consensus       206 d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t  284 (454)
T 4ao9_A          206 DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT  284 (454)
T ss_dssp             CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE
T ss_pred             hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEE
Confidence                  1111                            899999999999999999995 322211     123458764


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHH-H-hc--CCCCChHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHh
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-N-AE--GSGLAPFDCWICLRGVKTM--ALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~-~~--~~~~~~~~a~~~~~~l~~~--~~r~~~~~~~a~~l~~~L~  222 (339)
                        ++|.++|.  .-.|++++++ ++.+.+.... . ..  +..-+|+.++.++..|+.+  +...++.+++.++|.+.|+
T Consensus       285 --~gK~lggG--~Piga~~~~~-ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~  359 (454)
T 4ao9_A          285 --LGKYIGGG--MSFGAFGGRA-DVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLN  359 (454)
T ss_dssp             --EEGGGGTT--SSCEEEEECH-HHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --eccccCCC--CcceeeeeHH-HHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence              78999864  3345666664 5665543211 1 12  2345688777777666654  3445666667777777766


Q ss_pred             C
Q 019543          223 S  223 (339)
Q Consensus       223 ~  223 (339)
                      +
T Consensus       360 ~  360 (454)
T 4ao9_A          360 A  360 (454)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.18  E-value=1.6e-10  Score=110.84  Aligned_cols=164  Identities=13%  Similarity=0.091  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhHhCCCe---EEEcCcHH-HHHHHHHHhcCC----CCEEEEcCCCccchHHHHH-----------------
Q 019543           57 RDALESLLAKLDKADR---ALCFTSGM-AALAAVTHLLGT----GEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~~~---~l~~~sG~-~A~~~il~ll~~----GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .+.++..+.++.|-+.   .+++++++ .++.++++.+++    ||.|++++..+......+.                 
T Consensus       100 e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~  179 (450)
T 3bc8_A          100 TNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDE  179 (450)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTE
T ss_pred             HHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCcc
Confidence            3455666666677543   36777777 445555555444    8999998875544332221                 


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C-----cccC-CCeE
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R-----PLEL-GADI  146 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~-----~~~~-~~Di  146 (339)
                                                            ++|+++|++||++++||+||+..... .     .+.. ++|+
T Consensus       180 ~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~  259 (450)
T 3bc8_A          180 LRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA  259 (450)
T ss_dssp             EECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCE
T ss_pred             CCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCE
Confidence                                                  99999999999999999999865321 1     1222 7899


Q ss_pred             EEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhc-C-CCCCh-HHHHHHHh--chhhHHHHHHHHHHHHHHHHHHH
Q 019543          147 VMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAE-G-SGLAP-FDCWICLR--GVKTMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       147 ~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-~-~~~~~-~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L  221 (339)
                      ++.|.+|++..+  ..|+++..++++..+.+   ...+ + ...+| +..|..+.  +.+.+.+.+++..++++++++.+
T Consensus       260 ~v~S~HK~l~a~--~~~~~l~~rd~~~~~~~---~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l  334 (450)
T 3bc8_A          260 FVQSLDKNFMVP--VGGAIIAGFNEPFIQDI---SKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL  334 (450)
T ss_dssp             EEEEHHHHHSCC--SSCEEEEESCHHHHHHH---HHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCccCCCch--hccEEEEecCHHHHHHH---HHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999865  45677777765555444   3334 2 11234 33343322  34445666777788889999988


Q ss_pred             hCCC
Q 019543          222 ASHP  225 (339)
Q Consensus       222 ~~~~  225 (339)
                      ++++
T Consensus       335 ~~~~  338 (450)
T 3bc8_A          335 KKLA  338 (450)
T ss_dssp             HHHH
T ss_pred             HhhH
Confidence            8766

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.15  E-value=3.4e-09  Score=102.80  Aligned_cols=175  Identities=16%  Similarity=0.219  Sum_probs=105.2

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh--
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA--  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--  183 (339)
                      ++|.++|++||+++|.||++. +|-.+..     .....||++  ++|.+++..-. .|.+++++ ++.+.+......  
T Consensus       260 ~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~P-l~av~~~~-~i~~~~~~~~~~~~  335 (473)
T 4e3q_A          260 QAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFP-MGAVILGP-ELSKRLETAIEAIE  335 (473)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSC-CEEEEECH-HHHHHHHHHHHHHS
T ss_pred             HHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCC-cccccccH-HHHHHhcccccccc
Confidence            999999999999999999983 3322221     223458876  68999864323 45565664 677766543221  


Q ss_pred             -----cCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC---CCCceEEecCCCCCCCchHhHhhhcCCCcc
Q 019543          184 -----EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS---HPRVKKVNYAGLPEHPGHELHYSQAKGAGS  253 (339)
Q Consensus       184 -----~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~---~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~  253 (339)
                           .+..-+|+.+++++..|+.+.+  ..++.++..+++.+.|+.   ++.|..|                  +|.|.
T Consensus       336 ~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------RG~Gl  397 (473)
T 4e3q_A          336 EFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY------------------RGIGF  397 (473)
T ss_dssp             CCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETT
T ss_pred             ccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEE------------------eecce
Confidence                 1234468888888777776532  234445556666666654   3444333                  34567


Q ss_pred             eEEEee-CCH----------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEE----e
Q 019543          254 VLSFLT-GSL----------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRIS----V  318 (339)
Q Consensus       254 ivs~~~-~~~----------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRis----v  318 (339)
                      ++.|++ .+.          ....++.+.+.+.|+.+...                            .+.|||+    +
T Consensus       398 ~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------g~~i~l~PPL~i  449 (473)
T 4e3q_A          398 MWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------------------------GQSVVLCPPFIL  449 (473)
T ss_dssp             EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------------------------TTEEEECCCTTC
T ss_pred             EEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------------------------CCEEEEeCCCCC
Confidence            777875 211          12445666666656544311                            1456665    3


Q ss_pred             ccCCHHHHHHHHHHHHhc
Q 019543          319 GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       319 g~e~~~~li~~l~~al~~  336 (339)
                      +.++.+++++.|.++|++
T Consensus       450 t~~eid~~~~~l~~al~~  467 (473)
T 4e3q_A          450 TEAQMDEMFDKLEKALDK  467 (473)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            456677777888887764

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.04  E-value=5.6e-10  Score=115.32  Aligned_cols=173  Identities=12%  Similarity=0.129  Sum_probs=101.5

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCcc-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH----
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ----  181 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~----  181 (339)
                      ++|.++|++||+++|+||++. +|..+...     ....|++  +++|.++| |-...|++++++ ++++.+....    
T Consensus       619 ~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii--tlsK~L~g-G~~Plgav~~~~-~i~~~~~~~~~~~~  694 (831)
T 4a0g_A          619 RVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA--CFAKLLTG-GMVPLAVTLATD-AVFDSFSGDSKLKA  694 (831)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE--EECGGGGT-TSSCCEEEEECH-HHHHTTCSSCGGGS
T ss_pred             HHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE--EEeccccc-CccCcEEEEECH-HHHHHHhccccccc
Confidence            899999999999999999874 44333221     2234776  58999986 312346676764 6666654311    


Q ss_pred             --HhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHH--------HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcC
Q 019543          182 --NAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNA--------QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK  249 (339)
Q Consensus       182 --~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a--------~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~  249 (339)
                        ..++.+.+|+.++.++..|+.+++  ..++..++.        +.+.+.++.++.|..+.                  
T Consensus       695 ~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr------------------  756 (831)
T 4a0g_A          695 LLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV------------------  756 (831)
T ss_dssp             CCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE------------------
T ss_pred             ceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe------------------
Confidence              123456688888887777766532  111111111        12344455566554443                  


Q ss_pred             CCcceEEEeeCCH--------HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          250 GAGSVLSFLTGSL--------ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       250 ~~~~ivs~~~~~~--------~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                      +.|.++.|++.+.        ..+.++.+.|.+.|+.++          |                  ..+.|||+..+.
T Consensus       757 g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~----------p------------------~g~~lrl~pp~~  808 (831)
T 4a0g_A          757 VIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR----------P------------------LGNVIYLMCGPC  808 (831)
T ss_dssp             EETTEEEEEEC---------CHHHHHHHHHHHHTTEECC----------C------------------BTTEEEEECCTT
T ss_pred             ecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE----------e------------------cCCEEEEECCCC
Confidence            3567888887422        245667777777676543          2                  126799996665


Q ss_pred             CHHHHHHHHHHHH
Q 019543          322 DVNDLISDLDKAL  334 (339)
Q Consensus       322 ~~~~li~~l~~al  334 (339)
                      .+++.|+.+.++|
T Consensus       809 ~t~e~id~~~~~l  821 (831)
T 4a0g_A          809 TSPEICRRLLTKL  821 (831)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            5555444444444

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.04  E-value=1.1e-09  Score=104.37  Aligned_cols=149  Identities=12%  Similarity=0.077  Sum_probs=100.7

Q ss_pred             eEEEcCcHHHHHH-HHHHhcCC----CCEEEEcCCCccchHHHHH-----------------------------------
Q 019543           72 RALCFTSGMAALA-AVTHLLGT----GEEIVAGDDLYGGTDRLLS-----------------------------------  111 (339)
Q Consensus        72 ~~l~~~sG~~A~~-~il~ll~~----GD~Vi~~~~~y~~~~~~~~-----------------------------------  111 (339)
                      ..+++++++.++. ++++.+++    ||.||+++..+......+.                                   
T Consensus       136 ~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~  215 (501)
T 3hl2_A          136 NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPD  215 (501)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGG
T ss_pred             cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCC
Confidence            4677777786665 56666664    4999998875543332211                                   


Q ss_pred             --------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC-----cccCC-CeEEEeccccccccCCCceEE
Q 019543          112 --------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR-----PLELG-ADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 --------------------~~I~~la~~~g~~livD~a~a~g~~-~~-----~~~~~-~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                          ++|+++|++||++++||+||+.... ..     .+..| +|+++.|.+|.+-.+  +.||
T Consensus       216 ~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvp--IGG~  293 (501)
T 3hl2_A          216 CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP--VGGA  293 (501)
T ss_dssp             GEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCC--SSCE
T ss_pred             cEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceee--cCce
Confidence                                9999999999999999999987642 11     22346 999999999998654  3355


Q ss_pred             EEEEcChhHHHHHHHHHHhc-CCC-CChH-HHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          165 VLAVKGERLAKELYFLQNAE-GSG-LAPF-DCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       165 ~v~~~~~~l~~~l~~~~~~~-~~~-~~~~-~a~~~~--~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      .+..+++++.+++   ...+ |.. .+|. +.++.+  .+.+.+...++++.++++++.+.|+++.
T Consensus       294 ii~~~d~e~l~~~---~~~yPGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la  356 (501)
T 3hl2_A          294 IIAGFNDSFIQEI---SKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLS  356 (501)
T ss_dssp             EEEESCHHHHHHH---HHTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHH---HHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5657776665554   3333 322 2343 344433  3455677788888899999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	1e-103
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	1e-93
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	2e-87
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	6e-82
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	2e-81
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	6e-78
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	2e-70
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	8e-67
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	2e-16
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	6e-60
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	2e-21
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	6e-58
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	1e-22
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	1e-07
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	6e-07
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	4e-04
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	5e-04
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	0.002

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  307 bits (786), Expect = e-103
 Identities = 285/379 (75%), Positives = 313/379 (82%), Gaps = 47/379 (12%)

Query: 8   GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKL 67
            VSTLL+N  N+FDP+ A+STPLYQTATFKQPSA ENGPYDYTRSGNPTRDALESLLAKL
Sbjct: 2   SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKL 61

Query: 68  DKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS---------------- 111
           DKADRA CFTSGMAAL+AVTHL+  GEEIVAGDD+YGG+DRLLS                
Sbjct: 62  DKADRAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121

Query: 112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL 140
                                          RKI+EMAHA GAL+LVDNSIMSPVLSRPL
Sbjct: 122 KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL 181

Query: 141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 200
           ELGADIVMHSATKFIAGHSDVMAGVLAVKGE+LAKE+YFLQN+EGSGLAPFDCW+CLRG+
Sbjct: 182 ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 241

Query: 201 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG 260
           KTMALR+EKQQ+NA+KIA +L+SHPRVKKV YAGLP+HPGH LH+SQAKGAGSV SF+TG
Sbjct: 242 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG 301

Query: 261 SLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI 320
           S+ALSKH+VETTKYFSI VSFGSVKSLISMPCFMSHASIP EVR+ARGLTEDLVRIS GI
Sbjct: 302 SVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI 361

Query: 321 EDVNDLISDLDKALRTGPL 339
           EDV+DLISDLD A +T PL
Sbjct: 362 EDVDDLISDLDIAFKTFPL 380

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  282 bits (722), Expect = 1e-93
 Identities = 138/387 (35%), Positives = 205/387 (52%), Gaps = 59/387 (15%)

Query: 8   GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRD 58
           G +T +++   + DP  GALSTP++QT+TF   SA         E   Y YTR GNPT D
Sbjct: 7   GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTD 66

Query: 59  ALESLLAKLDKADRALCFTSGMAALAAVTH-LLGTGEEIVAGDDLYGGTDRLL------- 110
           ALE  LA L++ +  L   SG++A+      L   G+ IV+   +YG T   L       
Sbjct: 67  ALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 126

Query: 111 ----------------------------------------SRKIAEMAHAHGALLLVDNS 130
                                                      +A +AH  GALL+VDN+
Sbjct: 127 GINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNT 186

Query: 131 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGLA 189
            MSP   +PL+LGADIV+HS TK+I GH DV+ G++  K E + +     L++  G  ++
Sbjct: 187 FMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMS 246

Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
           PF+ W+ LRGVKT+ +R+E+  +NA KIA FL  HP + +V Y GL  HP +EL   Q  
Sbjct: 247 PFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS 306

Query: 250 GAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
             G ++SF + G L   + ++ + +   + VS G  ++LI  P  M+H+ +  E R   G
Sbjct: 307 LPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 366

Query: 309 LTEDLVRISVGIEDVNDLISDLDKALR 335
           +T+ L+R+SVG+ED  D+I+DL+ A+R
Sbjct: 367 ITDGLIRLSVGLEDPEDIINDLEHAIR 393

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  266 bits (680), Expect = 2e-87
 Identities = 127/388 (32%), Positives = 202/388 (52%), Gaps = 59/388 (15%)

Query: 7   PGVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTR 57
           PG +T  ++   +     GAL  P+YQTATF  P+          E   + Y+R  NPT 
Sbjct: 2   PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTL 61

Query: 58  DALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLL------ 110
           + LE+ +A L+  +  L   SGM A+ + +  LL  G+E++ G+ LYG T   L      
Sbjct: 62  NLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE 121

Query: 111 -----------------------------------------SRKIAEMAHAHGALLLVDN 129
                                                       +A++A  HGA ++VDN
Sbjct: 122 FGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181

Query: 130 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGL 188
           +  +P L RPLELGAD+V+HSATK+++GH D+ AG++      + +     L++  G+ L
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVL 241

Query: 189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 248
           +P D  + +RG+KT+ LR+++   NAQ +AEFLA  P+V+ ++Y GL   P + L   Q 
Sbjct: 242 SPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM 301

Query: 249 KGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR 307
              G +++F L G +   +  +   + FS  VS G  +SL   P  M+H+S   E R   
Sbjct: 302 SQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHY 361

Query: 308 GLTEDLVRISVGIEDVNDLISDLDKALR 335
           G++E LVR+SVG+ED++DL++D+ +AL+
Sbjct: 362 GISEGLVRLSVGLEDIDDLLADVQQALK 389

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  251 bits (642), Expect = 6e-82
 Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 50/376 (13%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLD 68
           +T+ +      D  YG +  P++ ++T+      E   +DY+R GNPTRD ++  LA+L+
Sbjct: 4   ATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELE 63

Query: 69  KADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLL------------------ 110
               A+   +GM+A+  VT +     +++       G    L                  
Sbjct: 64  GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123

Query: 111 ------------------------------SRKIAEMAHAHGALLLVDNSIMSPVLSRPL 140
                                           KI  +A   GA+ +VDN+ +SP L  PL
Sbjct: 124 DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL 183

Query: 141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV 200
            LGAD+V+HS TK++ GHSDV+AGV+  K   +  EL +  N  G     FD ++ LRG+
Sbjct: 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 243

Query: 201 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFL-T 259
           +T+  R+E  Q NAQ I ++L + P VKK+ +  LPE+ GHE+   Q KG G++LSF   
Sbjct: 244 RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD 303

Query: 260 GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG 319
           G     +  +     F++  S G V+SLIS    M+HA +  E R A G++E L+RIS G
Sbjct: 304 GDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG 363

Query: 320 IEDVNDLISDLDKALR 335
           IED  DLI+DL+   R
Sbjct: 364 IEDGEDLIADLENGFR 379

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  251 bits (642), Expect = 2e-81
 Identities = 116/417 (27%), Positives = 172/417 (41%), Gaps = 92/417 (22%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDAL 60
            TL ++   E +P   +   P+Y T ++   S          +     Y+R  NPT D L
Sbjct: 4   ETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVL 63

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEE-IVAGDDLYGGTDRLL--------- 110
           E  LA L+    AL   SG AA       L    + IV+  +LYGGT             
Sbjct: 64  EKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI 123

Query: 111 ---------------------------------------SRKIAEMAHAHGALLLVDNSI 131
                                                     +A+ A   G  L+VDN+ 
Sbjct: 124 EVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTF 183

Query: 132 -MSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAK--------------- 175
            M   L RPL  GA +V HS TK++ GH  V+AG +   G    +               
Sbjct: 184 GMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH 243

Query: 176 ---------ELYFLQNAE-------GSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAE 219
                    EL F+  A        G  L PF+ W+ L G++T++LR E+  +N   +A 
Sbjct: 244 GLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAH 303

Query: 220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGA-GSVLSF-LTGSLALSKHVVETTKYFSI 277
           +L   P+V  VNY GLP HP H+      KG  G+VL+F L G    +K  +   K  S 
Sbjct: 304 WLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISH 363

Query: 278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
             + G  ++L   P   +H+ +  E +   G++ ++VR+SVG+E V DL ++L +AL
Sbjct: 364 LANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  242 bits (617), Expect = 6e-78
 Identities = 115/384 (29%), Positives = 201/384 (52%), Gaps = 59/384 (15%)

Query: 10  STLLMNFSNEFDPYGALSTPLYQTATFKQPSA--------TENGPYDYTRSGNPTRDALE 61
           +T  ++ + + D +GA   P+YQT+TF   +          +   Y YTR GNPT   LE
Sbjct: 6   ATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLE 65

Query: 62  SLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGT-----DRLLSRKIAE 116
             +A L+K +  +  +SGM A+AA    +    + +  D+   G      +  L++   +
Sbjct: 66  GKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQ 125

Query: 117 MAHAH--------------------------------------------GALLLVDNSIM 132
           +   +                                            G L++ DN+  
Sbjct: 126 VDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFC 185

Query: 133 SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY-FLQNAEGSGLAPF 191
           SP+++ P++ G D+V+HSATK+I GH+DV+AG++  K + L +     +++  GS ++P 
Sbjct: 186 SPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPH 245

Query: 192 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGA 251
           D W+  RG+ T+ +R++ + +NA K+AE+L SHP V+KV Y G  +H GH++   Q +  
Sbjct: 246 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 305

Query: 252 GSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLT 310
           GS+++F+       +K +++  K  ++ VS G  +SLI  P  M+HA +P E R+A G+T
Sbjct: 306 GSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGIT 365

Query: 311 EDLVRISVGIEDVNDLISDLDKAL 334
           + ++R+SVGIED ++LI+D  + L
Sbjct: 366 DGMIRLSVGIEDADELIADFKQGL 389

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  220 bits (562), Expect = 2e-70
 Identities = 119/326 (36%), Positives = 178/326 (54%), Gaps = 50/326 (15%)

Query: 59  ALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIVAGDDLYGGTDRLLSR----- 112
           ALE  +AKL+ A+      SGM A+ A+V   L  G+ +++ D LYG T  L        
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 113 -------------------------------------------KIAEMAHAHGALLLVDN 129
                                                       + +       L++VDN
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 130 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKE-LYFLQNAEGSGL 188
           +  SP+L+ PL+LG DIV+HSATK+I GH+DV+AG++  + + +AK     +++  G+ +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQA 248
           +P D W+  RG  T+ +RV++  +NAQK+AEFL  H  VKKV Y GLP+HPGHE+   Q 
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM 241

Query: 249 KGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG 308
           K  GS+++F    L  +K V++     S+ VS G  +SLI  P  M+HA +P E R+A G
Sbjct: 242 KMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAG 301

Query: 309 LTEDLVRISVGIEDVNDLISDLDKAL 334
           LT++L+R+SVG E+V D+I DL +AL
Sbjct: 302 LTDNLIRLSVGCENVQDIIDDLKQAL 327

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  213 bits (543), Expect = 8e-67
 Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 112 RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGE 171
             ++++ H  GAL+ +D +  +P+  + L LGAD+V+HSATKF+ GH+DV+AG       
Sbjct: 173 ELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGC-ISGPL 231

Query: 172 RLAKELYFLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN 231
           +L  E+  L +  G  L P   ++ +RG+KT+ LRV++Q   A ++AE L +HP+V+ V 
Sbjct: 232 KLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVY 291

Query: 232 YAGLPEHPGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISM 290
           Y GL  HP H +   Q  G G  +SF + G L  +   V+  K   I  SFG  +S++  
Sbjct: 292 YPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQ 351

Query: 291 PCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL 334
           P  MS+  +    R   G+ ++LVR S G+ED +DL +D+ +AL
Sbjct: 352 PAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQAL 395

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.6 bits (190), Expect = 2e-16
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 23  YGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRAL 74
             A++TP+  T+ +     +E           ++Y R GNPT   LE  ++ L+ A+  L
Sbjct: 27  TDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTL 86

Query: 75  CFTSGMAALAAVTH 88
              SGM A   +  
Sbjct: 87  LMASGMCASTVMLL 100

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  195 bits (496), Expect = 6e-60
 Identities = 92/221 (41%), Positives = 133/221 (60%), Gaps = 4/221 (1%)

Query: 119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELY 178
                +L+VDN+ +SP +S PL  GADIV+HSATK+I GHSDV+ GVLA   + L + L 
Sbjct: 169 AGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228

Query: 179 FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEH 238
           FLQNA G+  +PFD W+  RG+KT+ LRV +   +A KIAEFLA+             + 
Sbjct: 229 FLQNAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKT 288

Query: 239 ---PGHELHYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 294
                  L   +    G ++SF + G    +     +T+ F++  S G ++SL+ +P  M
Sbjct: 289 HPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAVM 348

Query: 295 SHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALR 335
           +H  IP E R+A G+ +DLVRISVGIED +DL+ D+ +AL+
Sbjct: 349 THGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.9 bits (227), Expect = 2e-21
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 2   SVEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDAL 60
           +++E    +T  ++     D +G++  P+  + TFKQ S     G Y+Y+RS NP R+ L
Sbjct: 1   TLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENL 60

Query: 61  ESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYG 104
           E  +A L+ A   L F+SG A  A +   L  G   V+  D+YG
Sbjct: 61  ERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYG 104

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  190 bits (482), Expect = 6e-58
 Identities = 85/388 (21%), Positives = 153/388 (39%), Gaps = 66/388 (17%)

Query: 10  STLLMNFSNEFDP-YGALSTPLYQTATFKQPSA---------TENGPYDYTRSGNPTRDA 59
            T L+N         GA+++ + + ++    S            NG   Y R G  T  +
Sbjct: 3   DTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFS 62

Query: 60  LESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEIV---------------------- 97
           L+  + +L+     + F  G AA+A          + V                      
Sbjct: 63  LQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLG 122

Query: 98  ------------------------AGDDLYGGTDRLLSRKIAEMAHA----HGALLLVDN 129
                                      +  G     +    A +A        A++++DN
Sbjct: 123 VTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 182

Query: 130 SIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA 189
           +  + VL + L+ G D+ + +ATK++ GHSD M G          +         G  + 
Sbjct: 183 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-AYLMGQMVD 241

Query: 190 PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAK 249
               +I  RG++T+ +R+ +  +++ K+AE+LA HP+V +VN+  LP   GHE       
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT 301

Query: 250 GAGSVLSFL---TGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA 306
           G+  + SF+     +     + ++    FS+  S+G  +SLI        A+I    +  
Sbjct: 302 GSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAI--RPQGE 359

Query: 307 RGLTEDLVRISVGIEDVNDLISDLDKAL 334
              +  L+R+ +G+EDV+DLI+DLD   
Sbjct: 360 IDFSGTLIRLHIGLEDVDDLIADLDAGF 387

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 95.0 bits (235), Expect = 1e-22
 Identities = 46/324 (14%), Positives = 92/324 (28%), Gaps = 66/324 (20%)

Query: 49  YTRSGNPTRDALESLLAKL--DKADRALCFTSGMAA-LAAVTHLLGTGEEIVAGDDLYGG 105
           Y  S        E  L  L  D+ D+ + F    +A LA +  L          +     
Sbjct: 45  YIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHP 104

Query: 106 T------------------DRLLS-------------------------RKIAEMAHAHG 122
           +                    +L+                         +K+   A    
Sbjct: 105 SIERSCKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKE 164

Query: 123 ALLLVDNSIMSPVL-----SRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL 177
           A++ VD++  + V         L+LGAD+V+ S  K + G    +        + L  ++
Sbjct: 165 AIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLL----AGKKELVDKI 220

Query: 178 YFLQNAEGSGLAPFDCWICLRGVKTMAL-RVEKQQDNAQKIAEFLASHPRVKKVNYAGLP 236
           Y      G    P       R +K   L R+ K  + A+            +        
Sbjct: 221 YIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNI 280

Query: 237 EHPGHEL-HYSQAKGAGSVLSF-LTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFM 294
                        K      +  +   + +  ++++     +IT        +  MP   
Sbjct: 281 NIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITIT--------VAGMPGAS 332

Query: 295 SHASIPVEVRQARGLTEDLVRISV 318
               I +  R A  + ++ +  ++
Sbjct: 333 KSLRIDLTSRDAERIDDNYIIKAI 356

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 34/229 (14%)

Query: 112 RKIAEMAHAHGALLLVDNSIMSPV------LSRPLELGADIVMHSATKFIAGHSDVMAGV 165
            +IA++   +    +++ +           L +  +   D V+ S+ K +     +  G+
Sbjct: 231 VEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP--IGGGL 288

Query: 166 LAVKGERLAKELYFLQNAEGSGLAPFDCWI--CLRGVKTMALRVEKQQDNAQKIAEFLAS 223
           +        KE+        S     +  +     G K     V+ Q+++ + + E L  
Sbjct: 289 VYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 348

Query: 224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS 283
               KK     L          S       + + L          ++ T +F        
Sbjct: 349 LS--KKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFG------- 399

Query: 284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDK 332
                      +H  I +    A G+           ED+ + +S L+K
Sbjct: 400 ----NCYLGTYTHDYIVMNA--AIGVRT---------EDIVNSVSKLEK 433

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 35/253 (13%), Positives = 69/253 (27%), Gaps = 28/253 (11%)

Query: 96  IVAGDDLYGGTDRLLSRKIAEMAHAHGALLLVDN--SIMSPVLSRPLEL-----GADIVM 148
                      DRL   ++A +   +    +V+N   + S      ++        D  +
Sbjct: 200 STTACFAPRVPDRL--EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFV 257

Query: 149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALR 206
            S  K           ++A   E   +++  +     S     D  I L   G       
Sbjct: 258 QSLDKNFMVPVGGA--IIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKL 315

Query: 207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSK 266
           ++++++    ++  L              P +P       +        +       L  
Sbjct: 316 LKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFT 375

Query: 267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----ED 322
             V   +   +           +   FMSHA                +  +  I    +D
Sbjct: 376 RQVSGARAVPLGNVQTVSG--HTFRGFMSHADNY---------PCAYLNAAAAIGMKMQD 424

Query: 323 VNDLISDLDKALR 335
           V+  I  LDK L 
Sbjct: 425 VDLFIKRLDKCLN 437

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 44 NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEIV 97
                     P  D + + L K    D A        A  A +  L      +V
Sbjct: 36 TTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVV 90

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 37  KQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLLGTGEEI 96
           KQ +    G   Y  +G+     LE  + +L      +    G  A   ++ L     + 
Sbjct: 59  KQWAGMMIGDEAY--AGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQY 116

Query: 97  VAGDDLYGGT 106
           VAG+  +  T
Sbjct: 117 VAGNMYFTTT 126

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 38  QPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAAL-AAVTHLLGTGEEI 96
             +A   G   +  SG+ +  AL   +  +      +    G  A    +  L+   E+ 
Sbjct: 59  MQAAMMRGDEAF--SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 97  VAGDDLYGGT 106
              D      
Sbjct: 117 KGLDRSKMVA 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.96
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.93
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.93
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.89
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.87
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.85
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.83
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.83
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.82
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.8
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.78
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.77
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.76
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.76
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.76
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.75
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.75
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.75
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.75
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.75
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.74
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.74
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.73
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.72
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.72
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.72
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.71
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.71
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.71
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.71
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.71
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.71
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.7
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.7
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.69
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.68
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.68
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.65
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.62
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.61
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.58
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.58
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.58
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.57
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.57
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.56
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.56
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.55
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.54
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.53
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.53
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.44
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.39
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.39
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.38
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.37
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.36
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.32
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.31
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.29
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.29
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.21
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.2
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.18
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.15
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.14
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.14
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.13
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.1
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.07
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.04
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.04
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.03
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.94
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	98.67
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.55

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7e-73  Score=531.51  Aligned_cols=332  Identities=86%  Similarity=1.298  Sum_probs=320.9

Q ss_pred             CccceeeccCCCCCCCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH
Q 019543            8 GVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT   87 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il   87 (339)
                      +++|+++|+++..|+++++.+|||+||||.+++..+..+|.|+|.+||+++.||++||+++|++.+++|+|||+|+.+++
T Consensus         2 ~~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAisall   81 (380)
T d1ibja_           2 SVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT   81 (380)
T ss_dssp             CHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHH
T ss_pred             CHhHhhhcCCCCCCCCCCccCCccCCcceecCCCCccCCceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHHHHH
Confidence            46899999999899999999999999999999988888899999999999999999999999999999999999998888


Q ss_pred             HhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHHHH
Q 019543           88 HLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMAHA  120 (339)
Q Consensus        88 ~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la~~  120 (339)
                      .++++||+|++.+..|+++..+++                                               ++|+++||+
T Consensus        82 ~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~  161 (380)
T d1ibja_          82 HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHA  161 (380)
T ss_dssp             TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHT
T ss_pred             HhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHH
Confidence            899999999999999999988775                                               999999999


Q ss_pred             cCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch
Q 019543          121 HGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV  200 (339)
Q Consensus       121 ~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l  200 (339)
                      +|+++|||+|++++++.+|+.+|+||+++|++|+++||++++||.++.+++.+.+.++..++..|..++|.++++++++|
T Consensus       162 ~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl  241 (380)
T d1ibja_         162 QGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI  241 (380)
T ss_dssp             TTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred             cCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999998788888988888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecc
Q 019543          201 KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVS  280 (339)
Q Consensus       201 ~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~  280 (339)
                      +++..|++++.+|+.++++||+++|.|+.|+||++++||+|+++++++.+.|++++|.+++.+.+.+|+++|+.+.+++|
T Consensus       242 ~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~S  321 (380)
T d1ibja_         242 KTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVS  321 (380)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcCCC
Q 019543          281 FGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTGPL  339 (339)
Q Consensus       281 ~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~~~  339 (339)
                      ||+.+|++++|+.++|+.+++++|+..|+++++||||||+||+||||+||++||+++|+
T Consensus       322 lG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE~~eDLi~Dl~qAl~~l~~  380 (380)
T d1ibja_         322 FGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTFPL  380 (380)
T ss_dssp             CCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred             cCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999995

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-71  Score=519.34  Aligned_cols=330  Identities=40%  Similarity=0.632  Sum_probs=314.0

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCCCCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-   85 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-   85 (339)
                      +++|+++|+|...+ .+++|.||||+||||.|++..+..+|.|+|.+||+++.||++|++++|++.+++|+|||+|+.+ 
T Consensus         2 k~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~   81 (384)
T d1cs1a_           2 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLV   81 (384)
T ss_dssp             CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTBCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH
T ss_pred             ChhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCcccCCcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHH
Confidence            57899999997654 5899999999999999998888888999999999999999999999999999999999999985 


Q ss_pred             HHHhcCCCCEEEEcCCCccchHHHHH-----------------------------------------------HHHHHHH
Q 019543           86 VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------------------------------------RKIAEMA  118 (339)
Q Consensus        86 il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------------------------------------~~I~~la  118 (339)
                      +++++++||+|++++..|+++..++.                                               ++|+++|
T Consensus        82 l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia  161 (384)
T d1cs1a_          82 TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLA  161 (384)
T ss_dssp             HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHH
T ss_pred             HhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhccccccEEEEeccccccceeccHHHHhhhh
Confidence            56799999999999999999987665                                               9999999


Q ss_pred             HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh
Q 019543          119 HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR  198 (339)
Q Consensus       119 ~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~  198 (339)
                      |++|+++|||+|++++++.+|+.+|+||+++|+|||++||++++||+++++++.+.+.++..+..+|..++|.++|++++
T Consensus       162 ~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~r  241 (384)
T d1cs1a_         162 REVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR  241 (384)
T ss_dssp             HHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHH
T ss_pred             hhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999887788888888888999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHHHHccCCccee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKHVVETTKYFSI  277 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~~~~~L~~~~i  277 (339)
                      +|+++..|++++.+|+..+++||+++|.|+.|+||++++||+|+++++++.|.|++++|.+ ++.+.+.+|+++|+.+.+
T Consensus       242 gL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~  321 (384)
T d1cs1a_         242 GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTL  321 (384)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEE
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCccee
Confidence            9999999999999999999999999999999999999999999999999999999999998 677788999999999999


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ++|||+.+|++++|+.++|+.++++.++..|+++++||+|||+||+||||+||.+||+++
T Consensus       322 a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlEd~eDLi~Dl~~AL~aa  381 (384)
T d1cs1a_         322 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA  381 (384)
T ss_dssp             BSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999864

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=1e-70  Score=518.03  Aligned_cols=332  Identities=41%  Similarity=0.706  Sum_probs=309.2

Q ss_pred             CCCCccceeeccCCCCC-CCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEE
Q 019543            5 EEPGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALC   75 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~   75 (339)
                      ..|.|+|+++|+|+..+ .+++|.||||+||||.|++.+        ...+|.|+|.+||+++.||++|++++|++.+++
T Consensus         4 k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~   83 (397)
T d1y4ia1           4 RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLA   83 (397)
T ss_dssp             GGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCcccee
Confidence            46899999999997654 579999999999999998764        256799999999999999999999999999999


Q ss_pred             cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-------------------------------------------
Q 019543           76 FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-------------------------------------------  111 (339)
Q Consensus        76 ~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------------------------------  111 (339)
                      |+|||+|+.+ ++.++++||+|++++..|+++..++.                                           
T Consensus        84 ~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          84 TASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPETKVVYIETPANPTLS  163 (397)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred             ehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCCCcEEEecCCccccee
Confidence            9999999975 66799999999999999999987765                                           


Q ss_pred             ----HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHH--HHHHHhcC
Q 019543          112 ----RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEG  185 (339)
Q Consensus       112 ----~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l--~~~~~~~~  185 (339)
                          ++|+++||++|++++||+|++++++.+|+.+|+||+++|++|+++||++++||+++++++ .+.++  ..+++..|
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~-~~~~~r~~~~~~~~G  242 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQE-FIDQARFVGLKDITG  242 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTHHHHTTC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHH-HHHHHHHHHHHhCcC
Confidence                999999999999999999999999999999999999999999999999999999999864 44443  35566789


Q ss_pred             CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHH
Q 019543          186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLAL  264 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~  264 (339)
                      ..++|.++|+++++|+++..|++++.+|+.++++||+++|.|+.|+||++++||+|+++++++.+.|++++|.+. +.+.
T Consensus       243 ~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~  322 (397)
T d1y4ia1         243 GCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEA  322 (397)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999985 4566


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.+|+++|+.+.+++|||+.+|++++|+.++|..++++.++..|+++++||||||+||++|||+||.+||++.
T Consensus       323 ~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~a  395 (397)
T d1y4ia1         323 GRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  395 (397)
T ss_dssp             HHHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999863

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.3e-69  Score=511.16  Aligned_cols=328  Identities=33%  Similarity=0.573  Sum_probs=308.7

Q ss_pred             ccceeeccCCCCC---CCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            9 VSTLLMNFSNEFD---PYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         9 ~~~~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      .+|+++|+|+..+   .+++|.||||+||||.|++.+        ...+|.|+|.+||+++.||++||+++|++.+++|+
T Consensus        10 ~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~s   89 (398)
T d1qgna_          10 DGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMA   89 (398)
T ss_dssp             HHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhCCceEEEec
Confidence            3699999987533   369999999999999998764        24679999999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      |||+|+.+ +++++++||+|++++..|+++..++.                                             
T Consensus        90 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsNP~l~v  169 (398)
T d1qgna_          90 SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRC  169 (398)
T ss_dssp             CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCCC
T ss_pred             CcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccccceEEEccCcccccccc
Confidence            99999985 66799999999999999999987765                                             


Q ss_pred             ---HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCC
Q 019543          112 ---RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGL  188 (339)
Q Consensus       112 ---~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~  188 (339)
                         ++|+++||++|++++||+|++++++.+|+++|+||+++|+||+++||++++||+++.+ +++...++.+++.+|..+
T Consensus       170 ~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~-~~~~~~~~~~~~~~G~~l  248 (398)
T d1qgna_         170 VDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGAL  248 (398)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCC
T ss_pred             chHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcch-hhhhhhhhhhcccCCCcC
Confidence               9999999999999999999999999999999999999999999999999999998776 578888888888899999


Q ss_pred             ChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHHH
Q 019543          189 APFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSKH  267 (339)
Q Consensus       189 ~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~~  267 (339)
                      +|.++|+++++|+++..|++++.+|+..+++||+++|.|+.|+||++++||+|+++++++.|.|++++|.+ ++.+.+.+
T Consensus       249 ~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~  328 (398)
T d1qgna_         249 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAK  328 (398)
T ss_dssp             CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHH
T ss_pred             CHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987 67888999


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |+++|+.+.+++|||+.+|+++||+.++|+.+++++++..|+++++||||||+||++|||+||.+||+++
T Consensus       329 f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~~i  398 (398)
T d1qgna_         329 FVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI  398 (398)
T ss_dssp             HHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3.6e-70  Score=514.00  Aligned_cols=329  Identities=38%  Similarity=0.649  Sum_probs=281.7

Q ss_pred             CCccceeeccCCCCC-CCCCccccccccceeeCCCCCC--------CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            7 PGVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSATE--------NGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      |.|+|+++|+|...+ .+++|.||||+||||.|++.++        ..+|.|+|.+||+++.||++|++++|++.+++|+
T Consensus         2 ~g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~   81 (392)
T d1gc0a_           2 PGFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALA   81 (392)
T ss_dssp             CCHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             cCcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCcceeehh
Confidence            578999999997654 5799999999999999988752        3568999999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      |||+|+.+ +++++++||+|++++..|+++..+++                                             
T Consensus        82 SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~  161 (392)
T d1gc0a_          82 SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFESPANPNMHMA  161 (392)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCCCeEEEecccccceeeec
Confidence            99999985 66799999999999999999998776                                             


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHH--HHHHHhcCCC
Q 019543          112 --RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL--YFLQNAEGSG  187 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l--~~~~~~~~~~  187 (339)
                        ++|+++||++|++++||+|++++++.+|+++|+||+++|+|||++||++++||.+++++ ..+.++  ...++.+|..
T Consensus       162 Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~-~~~~~~r~~~~~~~~G~~  240 (392)
T d1gc0a_         162 DIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQ-ALVDRIRLQGLKDMTGAV  240 (392)
T ss_dssp             CHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECH-HHHHHHHHTHHHHHTCCC
T ss_pred             chHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchh-HHHHHHHHHHHHHccCCc
Confidence              99999999999999999999999999999999999999999999999999999999986 455544  4566778999


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee-CCHHHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT-GSLALSK  266 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~-~~~~~~~  266 (339)
                      ++|.++|+++++|+++..|++++.+|+..++++|+++|.|+.|+||++++||+|+++++++.+.|++++|.+ ++.+.+.
T Consensus       241 ~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~  320 (392)
T d1gc0a_         241 LSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGR  320 (392)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHH
T ss_pred             CChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998 4557789


Q ss_pred             HHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          267 HVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       267 ~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      +|++.|+.+.+++|||+.+|++++|+.++|+.+++++++.+|+++++||||||+||++|||+||.+||++
T Consensus       321 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         321 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA  390 (392)
T ss_dssp             HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeeeCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=4e-69  Score=508.61  Aligned_cols=332  Identities=37%  Similarity=0.684  Sum_probs=305.6

Q ss_pred             CCCCccceeeccCCCCCCCCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEc
Q 019543            5 EEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCF   76 (339)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~   76 (339)
                      +.++++|+++|+|...|+++++.+|||+||||.|++.+        +..+|.|+|.+||+++.||++|++++|++.+++|
T Consensus         1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~~   80 (394)
T d1e5ea_           1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT   80 (394)
T ss_dssp             CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCCCHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceeee
Confidence            45789999999998888899999999999999998764        3467999999999999999999999999999999


Q ss_pred             CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------------
Q 019543           77 TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------  111 (339)
Q Consensus        77 ~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------  111 (339)
                      +|||+|+.+ +++++++||+|++++..|+++..++.                                            
T Consensus        81 sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~t~lv~~Etp~NP~l~v  160 (394)
T d1e5ea_          81 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKI  160 (394)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred             ccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhcccccEEEEeccCCcceee
Confidence            999999984 67899999999999999999987765                                            


Q ss_pred             ---HHHHHHHH-HcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHH--HHHhcC
Q 019543          112 ---RKIAEMAH-AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYF--LQNAEG  185 (339)
Q Consensus       112 ---~~I~~la~-~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~--~~~~~~  185 (339)
                         ++++++++ ++|+++|+|+|++++++.+|+++|+||+++|+||+++||++++||++++++ +.....+.  +++.+|
T Consensus       161 ~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~-~~~~~~~~~~~~~~~G  239 (394)
T d1e5ea_         161 IDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA-DLLQQIRMVGIKDITG  239 (394)
T ss_dssp             CCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH-HHHHHHHHTCCCCCCC
T ss_pred             ehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchh-hHHHHHHHHHHHHhhC
Confidence               77877665 578999999999999999999999999999999999999999999999875 45544432  234579


Q ss_pred             CCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC-CHHH
Q 019543          186 SGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG-SLAL  264 (339)
Q Consensus       186 ~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~-~~~~  264 (339)
                      ..++|.++|+++++|+++..|++++.+|+..+++||+++|.|+.|+||+++++|+|+++++++.+.|++++|.+. +.+.
T Consensus       240 ~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~  319 (394)
T d1e5ea_         240 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG  319 (394)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred             CCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999974 4567


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.+|+++|+.+.+++|||+++|++++|+.++|+.+++++|+.+|+++++||||||+||+||||+||.|||+++
T Consensus       320 a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l  392 (394)
T d1e5ea_         320 AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDAL  392 (394)
T ss_dssp             HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999999999999864

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-68  Score=504.97  Aligned_cols=335  Identities=42%  Similarity=0.706  Sum_probs=314.0

Q ss_pred             CCCCCCccceeeccCCCCCCCCCccccccccceeeCCCCCC-CCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHH
Q 019543            3 VEEEPGVSTLLMNFSNEFDPYGALSTPLYQTATFKQPSATE-NGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMA   81 (339)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~-~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~   81 (339)
                      ..+..+|+|+++|+|...+.++++.||||+||||.+++.++ ...|.|+|.+||+++.||++|++++|++.+++|+|||+
T Consensus         2 ~~~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGma   81 (393)
T d1n8pa_           2 LQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSA   81 (393)
T ss_dssp             CCSSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSSBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHH
T ss_pred             CCCCCCcchheEECCCCCCCCCCccCCcCCCCceecCCcccccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEecCchh
Confidence            45778899999999987778999999999999999988764 46799999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------HHHH
Q 019543           82 ALAAVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------RKIA  115 (339)
Q Consensus        82 A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------~~I~  115 (339)
                      |+.+++.++++||+|++.+..|+++..++.                                              ++|+
T Consensus        82 Ai~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia  161 (393)
T d1n8pa_          82 TTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVA  161 (393)
T ss_dssp             HHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHH
T ss_pred             HHHhhhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeecchHHHHHHhhhhcceeEecCcchhhhhccchhhhh
Confidence            998888889999999999999999987766                                              9999


Q ss_pred             HHHH----HcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChH
Q 019543          116 EMAH----AHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF  191 (339)
Q Consensus       116 ~la~----~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~  191 (339)
                      ++||    ++|+++|||+|++++++.+|+.+|+||+++|++|+++||++++||+++.+++.+.++++..+..+|..++|.
T Consensus       162 ~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~  241 (393)
T d1n8pa_         162 DLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPF  241 (393)
T ss_dssp             HHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHH
T ss_pred             hhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChH
Confidence            9999    678999999999999999999999999999999999999999999999888778889998888999999999


Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCC-CCceEEecCCCCCCCchHhHhhhcC--CCcceEEEee-CCHHHHHH
Q 019543          192 DCWICLRGVKTMALRVEKQQDNAQKIAEFLASH-PRVKKVNYAGLPEHPGHELHYSQAK--GAGSVLSFLT-GSLALSKH  267 (339)
Q Consensus       192 ~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~-~~i~~v~~p~~~~~~~~~~~~~~~~--~~~~ivs~~~-~~~~~~~~  267 (339)
                      ++|+++++|+++..|++++.+|+.++++||+.+ +.|..|+||+++++|+|+++++++.  +.|++++|.+ ++.+.+.+
T Consensus       242 ~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~  321 (393)
T d1n8pa_         242 DAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASK  321 (393)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHH
T ss_pred             HHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHH
Confidence            999999999999999999999999999999876 7899999999999999999988864  5688999998 57777899


Q ss_pred             HHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          268 VVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       268 ~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      |+++|+.+.+++|||+.+|++++|+.++|+.++++.|+..|+++++||||||+||+||||+||.+||++.
T Consensus       322 f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         322 FASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             HHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999863

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.4e-68  Score=502.87  Aligned_cols=328  Identities=34%  Similarity=0.536  Sum_probs=299.3

Q ss_pred             CccceeeccCCCCCC-CCCccccccccceeeCCCCC--------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCc
Q 019543            8 GVSTLLMNFSNEFDP-YGALSTPLYQTATFKQPSAT--------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTS   78 (339)
Q Consensus         8 ~~~~~~~~~~~~~~~-~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~s   78 (339)
                      +|+|+++|+|..+++ ++++.||||+||||.|++.+        ...+|.|+|.+||+++.||++|++++|++.+++|+|
T Consensus         2 k~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~S   81 (421)
T d2ctza1           2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATAS   81 (421)
T ss_dssp             CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred             ChhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEEecC
Confidence            578999999987654 79999999999999998764        245699999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHhcCCCCEEEEcCCCccchHHHHH----------------------------------------------
Q 019543           79 GMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS----------------------------------------------  111 (339)
Q Consensus        79 G~~A~~-~il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------------------------------  111 (339)
                      ||+|+. ++++++++||+|++++..|+++..+++                                              
T Consensus        82 GmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~  161 (421)
T d2ctza1          82 GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIP  161 (421)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCC
T ss_pred             hHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEec
Confidence            999997 467799999999999999999987765                                              


Q ss_pred             --HHHHHHHHHcCCEEEEeCCcC-CCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhH---------------
Q 019543          112 --RKIAEMAHAHGALLLVDNSIM-SPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERL---------------  173 (339)
Q Consensus       112 --~~I~~la~~~g~~livD~a~a-~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l---------------  173 (339)
                        ++|+++||++|++++||++++ +++..+|+.+|+||+++|+||+++||++++||+|+.+++..               
T Consensus       162 Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~  241 (421)
T d2ctza1         162 DLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPG  241 (421)
T ss_dssp             CHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGG
T ss_pred             chHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchh
Confidence              999999999999999999998 68889999999999999999999999999999999865311               


Q ss_pred             ---------------HHHHH-HHHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCC
Q 019543          174 ---------------AKELY-FLQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPE  237 (339)
Q Consensus       174 ---------------~~~l~-~~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~  237 (339)
                                     +.+++ ...+.+|..++|.++|+++++|+++..|++++.+|+..++++|+++|.|+.|+||++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s  321 (421)
T d2ctza1         242 YHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPH  321 (421)
T ss_dssp             GTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTT
T ss_pred             hhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecCCcCC
Confidence                           11111 12345799999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHhHhhhcCC-CcceEEEee-CCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEE
Q 019543          238 HPGHELHYSQAKG-AGSVLSFLT-GSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVR  315 (339)
Q Consensus       238 ~~~~~~~~~~~~~-~~~ivs~~~-~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lR  315 (339)
                      ||+|+++++++.+ .|++++|.+ ++.+.+.+|+++|+.+.+++|||+.+|++++|+.++|..++++.+...||++++||
T Consensus       322 ~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~~liR  401 (421)
T d2ctza1         322 HPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVR  401 (421)
T ss_dssp             CTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEE
T ss_pred             CccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCcCeEE
Confidence            9999999999864 688999998 45677899999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCHHHHHHHHHHHHh
Q 019543          316 ISVGIEDVNDLISDLDKALR  335 (339)
Q Consensus       316 isvg~e~~~~li~~l~~al~  335 (339)
                      +|||+||++|||+||.+||.
T Consensus       402 lSvGlEd~eDLi~DL~qALa  421 (421)
T d2ctza1         402 LSVGLEHVEDLKAELKEALA  421 (421)
T ss_dssp             EECCSSCHHHHHHHHHHHTC
T ss_pred             EEeccCCHHHHHHHHHHhcC
Confidence            99999999999999999984

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-66  Score=486.29  Aligned_cols=327  Identities=27%  Similarity=0.439  Sum_probs=301.1

Q ss_pred             CccceeeccCCCCC-CCCCccccccccceeeCCCCC---------CCCCCcccCCCCchHHHHHHHHHhHhCCCeEEEcC
Q 019543            8 GVSTLLMNFSNEFD-PYGALSTPLYQTATFKQPSAT---------ENGPYDYTRSGNPTRDALESLLAKLDKADRALCFT   77 (339)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~---------~~~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~   77 (339)
                      +|+|+++|+|+..+ .++++.||||+||||.|++.+         ...+|.|+|.+||+++.||+++++++|++.+++|+
T Consensus         1 k~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~   80 (391)
T d1cl1a_           1 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP   80 (391)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred             CcccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEEec
Confidence            47899999997655 589999999999999998764         23458999999999999999999999999999999


Q ss_pred             cHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH---------------------------------------------
Q 019543           78 SGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------  111 (339)
Q Consensus        78 sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------  111 (339)
                      |||+|+.+ +++++++||+|++++..|+++..+++                                             
T Consensus        81 SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~  160 (391)
T d1cl1a_          81 CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH  160 (391)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTTEEEEEEESSCTTTCCCC
T ss_pred             cccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccccceeeecccCccccccc
Confidence            99999985 67799999999999999999998876                                             


Q ss_pred             --HHHHHHHHHc--CCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCC
Q 019543          112 --RKIAEMAHAH--GALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSG  187 (339)
Q Consensus       112 --~~I~~la~~~--g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~  187 (339)
                        ++|+++|+++  |+++|||+|++++++.+|+++|+||+++|+||+++||++++||.++.++ ++...+...++..|..
T Consensus       161 Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~-~~~~~~~~~~~~~G~~  239 (391)
T d1cl1a_         161 DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNA-RCWEQLRENAYLMGQM  239 (391)
T ss_dssp             CHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECT-TTHHHHHHHHHHTTCC
T ss_pred             ccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccc-cccccchhhhhccccc
Confidence              8999999775  9999999999999999999999999999999999999999999998876 6778888888889999


Q ss_pred             CChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC---CHHH
Q 019543          188 LAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG---SLAL  264 (339)
Q Consensus       188 ~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~---~~~~  264 (339)
                      ++|.++|+++++|+++..|++++.+|+..++++|+++|.|..|+||+++++|+|++++++++|.+++++|.+.   +.++
T Consensus       240 ~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~  319 (391)
T d1cl1a_         240 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE  319 (391)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred             CCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874   5577


Q ss_pred             HHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          265 SKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       265 ~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      +.+|+++|+.+.+++|||+.+|++++|..+.|..+.+  .++.|+++++||+|||+||.+|||+||.+||+++
T Consensus       320 ~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~--~~~~gi~~~liRlSVGlEd~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         320 LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP--QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI  390 (391)
T ss_dssp             HHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTST--TCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCcceEeeCCCCCccceeCCcccccccCCc--hHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHhh
Confidence            8899999999999999999999999998887776543  3568999999999999999999999999999975

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=2.2e-58  Score=426.59  Aligned_cols=278  Identities=42%  Similarity=0.722  Sum_probs=259.2

Q ss_pred             HHHHHHHhHhCCCeEEEcCcHHHHHH-HHHHhcCCCCEEEEcCCCccchHHHHH--------------------------
Q 019543           59 ALESLLAKLDKADRALCFTSGMAALA-AVTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------  111 (339)
Q Consensus        59 ~le~~la~~~g~~~~l~~~sG~~A~~-~il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------  111 (339)
                      +||+++|+++|++.+++|+|||+|+. +++++++|||+|++++..|++++.+++                          
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            69999999999999999999999997 577899999999999999999988775                          


Q ss_pred             ---------------------HHHHHHH-HHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCCceEEEEEEc
Q 019543          112 ---------------------RKIAEMA-HAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVK  169 (339)
Q Consensus       112 ---------------------~~I~~la-~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~  169 (339)
                                           +++++++ +++|+++|||+|++++++.+|+++|+||+++|+||+++|+++.+||+++.+
T Consensus        82 ~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~  161 (331)
T d1pffa_          82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSR  161 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEEC
T ss_pred             cccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCcccccccccc
Confidence                                 7788874 678999999999999999999999999999999999999999999999987


Q ss_pred             ChhHHHHHHH--HHHhcCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhh
Q 019543          170 GERLAKELYF--LQNAEGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQ  247 (339)
Q Consensus       170 ~~~l~~~l~~--~~~~~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~  247 (339)
                      ++ ...+.+.  .++.+|..++|.++++++++|+++..|++++.+|+..++++|+++|.|+.|+||++++||+|++++++
T Consensus       162 ~~-~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~  240 (331)
T d1pffa_         162 AD-IIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ  240 (331)
T ss_dssp             HH-HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred             cc-chhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhc
Confidence            54 3333332  23456999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHH
Q 019543          248 AKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLI  327 (339)
Q Consensus       248 ~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li  327 (339)
                      +.+.|++++|.+++.+.+.+|+++|+.+++++|||+.+|++.+|+.++|+.+++++++..|+++++||+|||+||++|||
T Consensus       241 ~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGlE~~~DLi  320 (331)
T d1pffa_         241 MKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDII  320 (331)
T ss_dssp             CSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHH
T ss_pred             ccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeeeCCHHHHH
Confidence            99999999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 019543          328 SDLDKALRTG  337 (339)
Q Consensus       328 ~~l~~al~~~  337 (339)
                      +||.+||+++
T Consensus       321 ~Dl~~AL~~i  330 (331)
T d1pffa_         321 DDLKQALDLV  330 (331)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999999975

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=1.4e-27  Score=224.78  Aligned_cols=248  Identities=19%  Similarity=0.158  Sum_probs=186.8

Q ss_pred             CCcccCC---CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHH-h--cCCCCEEEEcCCCccchHHH----------
Q 019543           46 PYDYTRS---GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTH-L--LGTGEEIVAGDDLYGGTDRL----------  109 (339)
Q Consensus        46 ~~~y~r~---~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~-l--l~~GD~Vi~~~~~y~~~~~~----------  109 (339)
                      +...||.   ..+.+++||++||+++|.|++++|+||+.|+..++. +  .++||.|+.+...+.....-          
T Consensus        78 gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~  157 (396)
T d2bwna1          78 GSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRI  157 (396)
T ss_dssp             CCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEE
T ss_pred             CccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceE
Confidence            3456664   346889999999999999999999999999986554 4  57899888776543322111          


Q ss_pred             ------------HH-------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---------ccCC
Q 019543          110 ------------LS-------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---------LELG  143 (339)
Q Consensus       110 ------------~~-------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---------~~~~  143 (339)
                                  ++                         ++|.+||++||+.|++||+|++|+.++.         +...
T Consensus       158 f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~  237 (396)
T d2bwna1         158 FRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR  237 (396)
T ss_dssp             ECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGG
T ss_pred             eecchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCcee
Confidence                        11                         9999999999999999999999987531         2234


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh-----HHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQK  216 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~a~~  216 (339)
                      .||+++||+|++|    ..||+|++++ +.++.+++..+  .+++.++|..++.+...++-     .+.++++++.|.++
T Consensus       238 ~di~~gTlsKa~g----~~Gg~v~~~~-~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~  312 (396)
T d2bwna1         238 IDIFNGTLAKAYG----VFGGYIAASA-RMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKV  312 (396)
T ss_dssp             CSEEEEESSSTTC----SCCEEEEECH-HHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             eeeeeeccccccc----ccccccchhH-HHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            6999999999998    4578988864 78888887644  67889999877666555443     23445666788888


Q ss_pred             HHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHcc-CCcceeecccCCcccceecccccc
Q 019543          217 IAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMS  295 (339)
Q Consensus       217 l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~~~~  295 (339)
                      +.+.+....      +|..             .+.++|+++.++++..+.++++. |++.|+.++.      +.+|.+  
T Consensus       313 ~~~~l~~~g------~~~~-------------~~~spIvpv~ig~~~~~~~~a~~lL~e~Gi~v~~------i~~PtV--  365 (396)
T d2bwna1         313 LKMRLKALG------MPII-------------DHGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQP------INFPTV--  365 (396)
T ss_dssp             HHHHHHHHT------CCBC-------------CCSSSCEEEECCCHHHHHHHHHHHHHHHCEECCE------ECTTTS--
T ss_pred             HHHHHHhcC------CCcC-------------CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEEE------ECCCcC--
Confidence            888887643      2211             23579999999999888899887 4567887652      456654  


Q ss_pred             CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          296 HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       296 h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                          |        ....+|||++...|+++.|+.+.++|+++
T Consensus       366 ----p--------~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         366 ----P--------RGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             ----C--------TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ----C--------CCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence                1        14578999999999999999999999863

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=5.7e-25  Score=206.78  Aligned_cols=246  Identities=17%  Similarity=0.155  Sum_probs=188.2

Q ss_pred             CcccCC---CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------
Q 019543           47 YDYTRS---GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------  111 (339)
Q Consensus        47 ~~y~r~---~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------  111 (339)
                      ...||.   ..+.+++||++||+++|.|.+++|+||+.|+.+++ ++.+++|.|+++...+.....-.+           
T Consensus        72 ~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h  151 (383)
T d1bs0a_          72 SGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH  151 (383)
T ss_dssp             CCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT
T ss_pred             CCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecc
Confidence            445664   34788999999999999999999999999998654 589999999998776544432221           


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-------ccCCCeEEEe
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-------LELGADIVMH  149 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-------~~~~~Di~~~  149 (339)
                                                         ++|.++|++||+++++||+|+.|+.+..       .....|+++.
T Consensus       152 nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~  231 (383)
T d1bs0a_         152 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVV  231 (383)
T ss_dssp             TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEE
T ss_pred             hHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccc
Confidence                                               9999999999999999999999877532       1224478899


Q ss_pred             ccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh-----HHHHHHHHHHHHHHHHHHHh
Q 019543          150 SATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT-----MALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       150 S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~-----~~~r~~~~~~~a~~l~~~L~  222 (339)
                      |++|.++.    .||+++++. ..++.++...+  .+++.++|..++.+...++.     .+.+.++..++..++.+.|+
T Consensus       232 t~~ka~g~----~Gg~v~~~~-~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~  306 (383)
T d1bs0a_         232 TFGKGFGV----SGAAVLCSS-TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQ  306 (383)
T ss_dssp             ESSSTTSS----CCEEEEECH-HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccc----cccccccch-hHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999984    478888775 67888876643  56778888765555444432     34567777788899999998


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +.+. .  ..                .+.++|+++.+++++.+.++.+.|.+.|+.++.      +.+|.+      |  
T Consensus       307 ~~g~-~--~~----------------~~~s~Ii~v~~g~~~~a~~~~~~L~~~Gi~v~~------~~~PtV------p--  353 (383)
T d1bs0a_         307 DLPF-T--LA----------------DSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTA------IRPPTV------P--  353 (383)
T ss_dssp             TSSC-E--EC----------------SCCSSBCCEEEESHHHHHHHHHHHHHTTEECCE------ECTTSS------C--
T ss_pred             hcCC-c--cC----------------CCCCCEEEEEECCHHHHHHHHHHHHHCCceEEE------EcCCCC------C--
Confidence            7652 1  11                235789999999998899999999888887763      446654      1  


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                            ..+.+|||++...++++.|+.+.++|+.
T Consensus       354 ------~g~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         354 ------AGTARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             ------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             ------CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence                  1346799999999999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.3e-25  Score=207.17  Aligned_cols=241  Identities=16%  Similarity=0.166  Sum_probs=185.9

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      ..+.+++||+++|+++|.+.+++++||+.|+.+ +..+.+++|.|+++...+.....-+.                    
T Consensus        88 ~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~d~~~le~~  167 (401)
T d1fc4a_          88 TQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEAR  167 (401)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCCChHHHHHH
Confidence            457789999999999999999999999999985 55689999999998776544331111                    


Q ss_pred             -----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c------ccCCCeEEEecccc
Q 019543          112 -----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P------LELGADIVMHSATK  153 (339)
Q Consensus       112 -----------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~------~~~~~Di~~~S~sK  153 (339)
                                                   ++|.+||++||+.+++||+|+.|+.+.   +      ....+|++++|++|
T Consensus       168 ~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~K  247 (401)
T d1fc4a_         168 LKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGK  247 (401)
T ss_dssp             HHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSS
T ss_pred             HHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeeccc
Confidence                                         999999999999999999999887642   1      12246999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWICLRGVKT---MALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~~~~l~~---~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      .++|   ..||+++++ +++++.++...+  .+++.++|..++.+...++.   .++++++++++.+++.+.+...+.  
T Consensus       248 a~gg---~~Gg~v~g~-~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~--  321 (401)
T d1fc4a_         248 ALGG---ASGGYTAAR-KEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGF--  321 (401)
T ss_dssp             TTCS---SSCEEEEEC-HHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             cccc---CCcccccCC-HHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCC--
Confidence            9974   347888776 478888876533  56888888776655555443   467788899999999998887542  


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                          +.             ..+.++|+++.+++...+..+.++|.+.|+.++.      +.+|++.              
T Consensus       322 ----~~-------------~~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~v~~------i~~PtVp--------------  364 (401)
T d1fc4a_         322 ----TL-------------AGADHAIIPVMLGDAVVAQKFARELQKEGIYVTG------FFYPVVP--------------  364 (401)
T ss_dssp             ----CB-------------CCSSSSEEEEEEECHHHHHHHHHHHHHTTEECCE------ECTTSSC--------------
T ss_pred             ----cc-------------CCCCCCEEEEEECCHHHHHHHHHHHHHCCceEEe------ECCCCCC--------------
Confidence                11             1235789999999998888999999888887762      4456541              


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .....||++++..++++.|+.+.++|++
T Consensus       365 ~g~~~lRi~~~a~hT~edId~~v~al~e  392 (401)
T d1fc4a_         365 KGQARIRTQMSAAHTPEQITRAVEAFTR  392 (401)
T ss_dssp             TTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            1346799999999999999888888865

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.89  E-value=1.3e-22  Score=190.61  Aligned_cols=217  Identities=13%  Similarity=0.111  Sum_probs=169.8

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ..+|.+++||+++|+++|.+++++++||++|+.+++ ++ +++||+|++++.+|.++...+.                  
T Consensus        31 ~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~  110 (384)
T d1b9ha_          31 MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNL  110 (384)
T ss_dssp             TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCB
T ss_pred             cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccccccccccccccccccccc
Confidence            368999999999999999999999999999998654 44 7999999999999988765543                  


Q ss_pred             ----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cccCCCeEEEecc--ccccccCC
Q 019543          112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--TKFIAGHS  159 (339)
Q Consensus       112 ----------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~~~~Di~~~S~--sK~l~g~~  159 (339)
                                                  ++|.++|+++|++||+|++|+.|...+  ......|+.++||  +|.++.  
T Consensus       111 d~~~~~~~i~~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~--  188 (384)
T d1b9ha_         111 DPEAVAAAVTPRTKVIMPVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTA--  188 (384)
T ss_dssp             CHHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCS--
T ss_pred             chhhhcccccccccccccccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccccccccc--
Confidence                                        999999999999999999999886533  3333447778776  799874  


Q ss_pred             CceEEEEEEcChhHHHHHHHHHHh-----------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHh
Q 019543          160 DVMAGVLAVKGERLAKELYFLQNA-----------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLA  222 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~~~-----------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~  222 (339)
                       ..||+++++++++.++++.+++.                 +...|+++.|++++.+|+.+++..++++++++++.+.|+
T Consensus       189 -g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~  267 (384)
T d1b9ha_         189 -GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLG  267 (384)
T ss_dssp             -SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhhhhhhhhhh
Confidence             34899999988898888877653                 124588899999999999999999999999999999999


Q ss_pred             CCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEee--CCHHHHHHHHccCCcceeecccC
Q 019543          223 SHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLT--GSLALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       223 ~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~--~~~~~~~~~~~~L~~~~i~v~~G  282 (339)
                      .++++.....+....           ......+.|.+  .......+|++.|+..||.++..
T Consensus       268 ~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~GI~~~~~  318 (384)
T d1b9ha_         268 AIDGVVPQGGDVRAD-----------RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAA  318 (384)
T ss_dssp             TSTTCEECCCCTTCC-----------BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEEC
T ss_pred             ccccccccccccccc-----------ccccccccceecccccccHHHHHHHHHHCCCCeeee
Confidence            998875433322111           11223445544  33445567999998888877654

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=5.7e-22  Score=184.90  Aligned_cols=264  Identities=13%  Similarity=0.135  Sum_probs=183.1

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      .+|.+++||+++|+++|.+++++|+||++|+.+++ ++ +++||+|++++.+|.++...+.                   
T Consensus        29 ~G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d  108 (376)
T d1mdoa_          29 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT  108 (376)
T ss_dssp             SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecccccccCCC
Confidence            47899999999999999999999999999998654 45 8999999999999888765443                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccC-CCeEEEecc--ccccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLEL-GADIVMHSA--TKFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~-~~Di~~~S~--sK~l~g~~~~  161 (339)
                                                 ++|.++|++||++||+|+||+.|........ ..|..++||  +|.++.   .
T Consensus       109 ~~~l~~~i~~~tkaIi~~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~---g  185 (376)
T d1mdoa_         109 PEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC---A  185 (376)
T ss_dssp             HHHHHHHCCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS---S
T ss_pred             HHHHHHhcCCCCeEEEEeCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCC---C
Confidence                                       9999999999999999999998865332211 124566666  699974   3


Q ss_pred             eEEEEEEcChhHHHHHHHHHHh------------------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 019543          162 MAGVLAVKGERLAKELYFLQNA------------------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKI  217 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l~~~~~~------------------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l  217 (339)
                      .||+++++++++.++++.++..                        +...+++..++++..+|+.+++..++++++++++
T Consensus       186 ~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r~~~~~~~  265 (376)
T d1mdoa_         186 EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQY  265 (376)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHHhhhhhhh
Confidence            4899999998888888765421                        2356788889999999999999999999999999


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH---HHHHHHccCCcceeecccCCcccceeccccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA---LSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~---~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+.|++.+.+.... +  ....         ......+.+.+....   ...+|.+.|+..||.++.+.. .+...|...
T Consensus       266 ~~~L~~~~~~~~~~-~--~~~~---------~~~~~~~~~~~~~~~~~~~Rd~l~~~L~~~gI~~~~~y~-~~~~~~~~~  332 (376)
T d1mdoa_         266 HQAMADLPFQPLSL-P--SWEH---------IHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFR-AAHTQKYYR  332 (376)
T ss_dssp             HHHHHTSSCEECCC-C--SSCE---------ECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCC-CGGGSHHHH
T ss_pred             hhhccccccccccc-c--cccc---------cccccccccccccccchhhHHHHHHHHHHCCCCeeeECc-chhcCHHHH
Confidence            99999887643211 1  1110         011223344343221   134688888888888775421 222222110


Q ss_pred             c---CCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          295 S---HASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~---h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .   ..++|.    ..-+....|.|-+...-+++.++.+.++|++
T Consensus       333 ~~~~~~~~p~----a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~  373 (376)
T d1mdoa_         333 ERFPTLTLPD----TEWNSERICSLPLFPDMTESDFDRVITALHQ  373 (376)
T ss_dssp             HHSTTCCCHH----HHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             hhCCCCCCHH----HHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence            0   011111    1112346677766666567778888888875

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.85  E-value=5.4e-20  Score=171.62  Aligned_cols=215  Identities=16%  Similarity=0.161  Sum_probs=167.4

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh--cCCC--CEEEEcCCCccchHHHHH-----------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL--LGTG--EEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l--l~~G--D~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      .+|.+++||+++++++|.+++++++||++|+.+++..  +++|  |+|+++..++.++...+.                 
T Consensus        29 ~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~  108 (371)
T d2fnua1          29 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNI  108 (371)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSB
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeeccCcccccccccccccc
Confidence            4789999999999999999999999999999865543  4444  589999999988775443                 


Q ss_pred             ----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cccCCCeEEEecc--ccccccCC
Q 019543          112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--TKFIAGHS  159 (339)
Q Consensus       112 ----------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~~~~Di~~~S~--sK~l~g~~  159 (339)
                                                  ++|.++|+++|++||+|++|+.|...+  ......|+.++||  +|.++.. 
T Consensus       109 ~~~~~~~~~~~~t~avi~vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g-  187 (371)
T d2fnua1         109 DELALEKLINERTKAIVSVDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTA-  187 (371)
T ss_dssp             CGGGSGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-
T ss_pred             cchhhhhhccchhhccccccccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccccccccc-
Confidence                                        899999999999999999999986533  2333458888888  7999753 


Q ss_pred             CceEEEEEEcChhHHHHHHHHHHh----------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhC
Q 019543          160 DVMAGVLAVKGERLAKELYFLQNA----------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~~~----------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                        .||+++++++++.++++.+++.                +...|+++.|++++.+|+.++...+++++++.++.+.|++
T Consensus       188 --~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~y~~~l~~  265 (371)
T d2fnua1         188 --EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKD  265 (371)
T ss_dssp             --SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --cceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhhhcccccc
Confidence              4899999998899988876531                2356889999999999999999999999999999999999


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH--HHHHHHHccCCcceeecccC
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL--ALSKHVVETTKYFSITVSFG  282 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~--~~~~~~~~~L~~~~i~v~~G  282 (339)
                      .+.+..+. |....           ......+++.+.+.  ....+|.+.|+..||.++..
T Consensus       266 ~~~~~~~~-~~~~~-----------~~~~~~~~i~~~~~~~~~r~~~~~~L~~~gI~~~~~  314 (371)
T d2fnua1         266 NPYFTPLH-PLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVH  314 (371)
T ss_dssp             CSSEEESG-GGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCC
T ss_pred             cccccccc-ccccc-----------ccccccccccccccchhHHHHHHHHHHHCCCCccee
Confidence            88765332 21111           12334666666443  22456888888888887754

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.83  E-value=8.7e-20  Score=170.21  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=142.7

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH--------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS--------------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~--------------------  111 (339)
                      +|.+++||+.+++++|.+++++++||++|+.+++ ++ +++||+|++++.+|.++...+.                    
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~   99 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVD   99 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHH
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEecccccccccccc
Confidence            7999999999999999999999999999998644 54 8899999999999988764432                    


Q ss_pred             ----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--cccCCCeEEEecc--ccccccCC
Q 019543          112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--PLELGADIVMHSA--TKFIAGHS  159 (339)
Q Consensus       112 ----------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~~~~~~Di~~~S~--sK~l~g~~  159 (339)
                                                  ++|.++|+++|++||+|+||+.|...+  ..+...|+.++||  +|.++.. 
T Consensus       100 ~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~~K~l~tg-  178 (374)
T d1o69a_         100 LLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS-  178 (374)
T ss_dssp             HHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS-
T ss_pred             cccccchhcccccccccccccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccCccccccc-
Confidence                                        899999999999999999999886533  3343459999998  5999743 


Q ss_pred             CceEEEEEEcChhHHHHHHHHHHh--------------cCCCCChHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          160 DVMAGVLAVKGERLAKELYFLQNA--------------EGSGLAPFDCWICLRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       160 ~~~gG~v~~~~~~l~~~l~~~~~~--------------~~~~~~~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                        .||++++++++++++++.++..              +...|+.+.|+++..+|+.++...++++++++++.+.|....
T Consensus       179 --eGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~~~  256 (374)
T d1o69a_         179 --GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYF  256 (374)
T ss_dssp             --SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             --cceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHHHhhccccc
Confidence              4789999998888888876531              235689999999999999999999999999999999998753

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.83  E-value=2e-19  Score=167.83  Aligned_cols=239  Identities=18%  Similarity=0.123  Sum_probs=165.8

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-Hh-cCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-HL-LGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~l-l~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      ...+++++.+|+++|++  +.++++||++|+..++ ++ +++||+|++++..|+++...+.                   
T Consensus        50 ~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~  129 (381)
T d1elua_          50 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  129 (381)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccccc
Confidence            45678899999999974  6778888899987544 44 6899999999998876553322                   


Q ss_pred             -----------------------------------HHHHHHHHHc----CCEEEEeCCcCCCCCc-CcccCCCeEEEecc
Q 019543          112 -----------------------------------RKIAEMAHAH----GALLLVDNSIMSPVLS-RPLELGADIVMHSA  151 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~----g~~livD~a~a~g~~~-~~~~~~~Di~~~S~  151 (339)
                                                         ++|.++|++|    |+++++|++|+.|... +....++|++++|+
T Consensus       130 ~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~  209 (381)
T d1elua_         130 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTG  209 (381)
T ss_dssp             SSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEES
T ss_pred             ccchHHHHHHhhhcccccccccccccccccccchhhHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence                                               9999999995    6999999999988643 33356899999999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHH----------------------HHhcCCCCChHHHHHHHhchh---h---H
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCWICLRGVK---T---M  203 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~a~~~~~~l~---~---~  203 (339)
                      +|+++++.+  .|++..++ ...+.+...                      .+......+....+.+..+++   .   .
T Consensus       210 ~K~~~~p~G--~g~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~  286 (381)
T d1elua_         210 HKWFAGPAG--VGGLYIHG-DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  286 (381)
T ss_dssp             SSTTCCCTT--CEEEEECT-TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             cccccccch--hhHHHhhH-HHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccc
Confidence            999998754  36777765 333332210                      000111222222222222222   1   3


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCC
Q 019543          204 ALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGS  283 (339)
Q Consensus       204 ~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~  283 (339)
                      +.+.++..++++++.+.|+++++++.+. +.              ...+++++|.+.+......+.+.|++.|+.++.  
T Consensus       287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~--------------~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~--  349 (381)
T d1elua_         287 EERYQAICQRSEFLWRGLNQLPHVHCLA-TS--------------APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRT--  349 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEESC-SS--------------CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEE--
T ss_pred             ccchhhhhhHHHHHHHHHhcCCCeEecC-CC--------------CccccEEEEEcCCCCCHHHHHHHHHhCCcEEEe--
Confidence            4556777788899999999999876432 21              115789999886554456677778777876641  


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                          .  .                  .++.||+|++..++++.|+.+.++|+++
T Consensus       350 ----~--~------------------~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         350 ----I--A------------------DPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             ----E--T------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             ----c--C------------------CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence                0  0                  2468999999999989999999999984

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=4.4e-20  Score=172.08  Aligned_cols=158  Identities=23%  Similarity=0.234  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHhHhC---CCeEEEcCcHHHHHHHHHHhcCCCCEEEE-c-CCCccchHHHHH-------------------
Q 019543           56 TRDALESLLAKLDK---ADRALCFTSGMAALAAVTHLLGTGEEIVA-G-DDLYGGTDRLLS-------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g---~~~~l~~~sG~~A~~~il~ll~~GD~Vi~-~-~~~y~~~~~~~~-------------------  111 (339)
                      ..+++++..++.++   .+.++++++|++|+.+.+..+.+||+|++ + .+.|......++                   
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~d~e~l~~~i  130 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNKI  130 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTTC
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhcCCeEECCCCHHHHHHhc
Confidence            34667776666665   35789999999999865443556676654 3 356665543332                   


Q ss_pred             -----------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-----CcccCCCeEEEeccccccccCCCceE
Q 019543          112 -----------------------RKIAEMAHAHGALLLVDNSIMSPVLS-----RPLELGADIVMHSATKFIAGHSDVMA  163 (339)
Q Consensus       112 -----------------------~~I~~la~~~g~~livD~a~a~g~~~-----~~~~~~~Di~~~S~sK~l~g~~~~~g  163 (339)
                                             ++|+++|++||+++++|++|+.+++.     .+...++|++++|+||+++|+   .+
T Consensus       131 ~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g~---~~  207 (366)
T d2aeua1         131 DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP---RG  207 (366)
T ss_dssp             CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC---SC
T ss_pred             CCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccccc---ce
Confidence                                   89999999999999999999876431     233568999999999999865   46


Q ss_pred             EEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhH-HHHHHHHHHHHHHH
Q 019543          164 GVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTM-ALRVEKQQDNAQKI  217 (339)
Q Consensus       164 G~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~-~~r~~~~~~~a~~l  217 (339)
                      |++++++ +++++++.....++..++|..++++.++|+++ ..|++++.++++.+
T Consensus       208 G~i~~~~-~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i  261 (366)
T d2aeua1         208 GLLAGKK-ELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNF  261 (366)
T ss_dssp             EEEEEEH-HHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             eEEEecH-HHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            8998875 78999998888888889998888888888765 34666666666554

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.80  E-value=9.4e-19  Score=164.10  Aligned_cols=248  Identities=15%  Similarity=0.173  Sum_probs=158.8

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCC----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      |....+..++++++.+.+.+.+|.    +++++++++++|+..++ .+++|||+|++++|.|.+....+.          
T Consensus        63 Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~  142 (388)
T d1j32a_          63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILP  142 (388)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEe
Confidence            444433334555666666655553    45677777789998655 589999999999999987665443          


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----ccc-C-
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PLE-L-  142 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~~-~-  142 (339)
                                                                 ++|+++|++||++||+||+|+...+..    .+. . 
T Consensus       143 ~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~  222 (388)
T d1j32a_         143 TTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS  222 (388)
T ss_dssp             CCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             cccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhC
Confidence                                                       899999999999999999997544321    111 1 


Q ss_pred             ----CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh----chhhHHHHHHHHHHHH
Q 019543          143 ----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR----GVKTMALRVEKQQDNA  214 (339)
Q Consensus       143 ----~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~----~l~~~~~r~~~~~~~a  214 (339)
                          .-.|++.|+||.++.+|. +.||+++++ ++++.+...........+.....++..    .-+.+...++..+++.
T Consensus       223 ~~~~~~~i~~~S~SK~~~~~Gl-RvG~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~  300 (388)
T d1j32a_         223 PEAYERSVVCSGFAKTYAMTGW-RVGFLAGPV-PLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR  300 (388)
T ss_dssp             HHHHHTEEEEEESTTTTTCTTT-CCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred             cccccceeEecCChhhhhcchh-HeEEEEECH-HHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence                125899999999987775 456887764 677777666554455555544333222    2234566677777888


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccC-CcceeecccCCcccceeccc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETT-KYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~  292 (339)
                      +.+.+.|+++++++. ..|                ..|..+++.+... ....+|++.| ++.|+.+..|..+       
T Consensus       301 ~~~~~~l~~~~g~~~-~~p----------------~gg~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F-------  356 (388)
T d1j32a_         301 RYMLDALNAMPGLEC-PKP----------------DGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAF-------  356 (388)
T ss_dssp             HHHHHHHHTCTTCBC-CCC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGG-------
T ss_pred             HHHHHHHHhCCCCEe-cCC----------------CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEecccc-------
Confidence            889999998876542 112                1244566555321 2234565554 4568887766432       


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEeccCC--HHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisvg~e~--~~~li~~l~~al~~  336 (339)
                                     | .++.+|+|++..+  .++-+++|.++|+.
T Consensus       357 ---------------~-~~~~~Rls~~~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         357 ---------------G-ADDCIRLSYATDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             ---------------T-CTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------C-CCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence                           1 2468999998522  23345666666654

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.5e-18  Score=163.64  Aligned_cols=246  Identities=16%  Similarity=0.129  Sum_probs=158.2

Q ss_pred             chHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHH-----HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           55 PTRDALESLLAKLDKA---DRALCFTSGMAALAAVT-----HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il-----~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...++.++.+|+++|+   +.+++++|+++++..++     ..+++||+|++++..|++....+.               
T Consensus        66 ~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~  145 (405)
T d1jf9a_          66 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL  145 (405)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECC
Confidence            3466778899999984   35666777788876432     237899999999998887543222               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++||++|+++++|.+|+.|.. .+....++|++++|++|
T Consensus       146 ~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK  225 (405)
T d1jf9a_         146 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHK  225 (405)
T ss_dssp             CTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             CCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccc
Confidence                                                 9999999999999999999999965 34556789999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHH----------------------HHhcCCCCChHHHHHHHhchhh-----HHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFL----------------------QNAEGSGLAPFDCWICLRGVKT-----MALR  206 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~a~~~~~~l~~-----~~~r  206 (339)
                      ++|++|   .|+++.++ ++.+.+...                      .++...+.+....+.+..+++.     ++..
T Consensus       226 ~~Gp~G---~g~l~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i  301 (405)
T d1jf9a_         226 LYGPTG---IGILYVKE-ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNI  301 (405)
T ss_dssp             TTSCSS---CEEEEECH-HHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cccCCC---ceeeeech-hhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHH
Confidence            986544   36777764 443322110                      0011122232222222223332     1222


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      .+......+++.+.++..+.+. +..|.               ..+++++|.+++.. ...+...|...||.++.|..  
T Consensus       302 ~~~~~~L~~~~~~~l~~~~~~~-~~~~~---------------~r~~ivsf~~~~~~-~~~~~~~L~~~gI~v~~G~~--  362 (405)
T d1jf9a_         302 AEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKHH-AYDVGSFLDNYGIAVRTGHH--  362 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTCC-HHHHHHHHHHTTEECEEECT--
T ss_pred             HHHHHHHHHHHHhhhhcCCccc-ccCCc---------------CcCcEEEEEcCCCC-HHHHHHHHHHCCcEEEccch--
Confidence            2333344566777777776543 23231               25689999885432 23455556677898887643  


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                          |+.        ......|+ ++.||||++..++++.|+.+.++|++
T Consensus       363 ----c~~--------~~~~~~~~-~g~iRiS~~~ynt~eDid~l~~~l~~  399 (405)
T d1jf9a_         363 ----CAM--------PLMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQR  399 (405)
T ss_dssp             ----TCH--------HHHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ----hhh--------hHHHhcCC-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                221        12223443 57899999999988888999888875

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.77  E-value=1.1e-18  Score=161.12  Aligned_cols=120  Identities=23%  Similarity=0.230  Sum_probs=98.9

Q ss_pred             chHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           55 PTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      +.++.+|+++|+++|.+++++++||++|+.+ +.++++|||+|+++++.|......+.                      
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~  126 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPE  126 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHH
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccccCHH
Confidence            5789999999999999999999999999985 55689999999999988765442221                      


Q ss_pred             ---------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccccccc
Q 019543          112 ---------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAG  157 (339)
Q Consensus       112 ---------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g  157 (339)
                                                       ++|+++|++||+++++|++|+.|... +....++|++++|++|++++
T Consensus       127 ~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~  206 (364)
T d2e7ja1         127 NFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAA  206 (364)
T ss_dssp             HHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSC
T ss_pred             HHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccccccCC
Confidence                                             99999999999999999999988653 33356899999999999997


Q ss_pred             CCCceEEEEEEcChhHHHHH
Q 019543          158 HSDVMAGVLAVKGERLAKEL  177 (339)
Q Consensus       158 ~~~~~gG~v~~~~~~l~~~l  177 (339)
                      ++  .+|++++++ ++.+.+
T Consensus       207 ~g--~~g~l~~~~-~~~~~~  223 (364)
T d2e7ja1         207 SG--PIGVMGMKE-EWAEIV  223 (364)
T ss_dssp             CS--SCEEEEECT-TTTTTT
T ss_pred             CC--CEEEEEECH-HHHHHH
Confidence            75  367888876 444433

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.3e-17  Score=155.77  Aligned_cols=240  Identities=14%  Similarity=0.114  Sum_probs=149.9

Q ss_pred             HHHHHHHHHhHh----C-----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           57 RDALESLLAKLD----K-----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g-----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ..+|++.+|+++    +     .+++++++++++++..++ .+++|||+|++++|.|.+....+.               
T Consensus        64 ~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~  143 (388)
T d1gdea_          64 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEED  143 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGG
T ss_pred             CHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeeccccc
Confidence            345555555543    2     235777777789998655 589999999999999987654443               


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-c----CCC
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-E----LGA  144 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-~----~~~  144 (339)
                                                            ++|+++|++||++||+||+|+...+..    ++ .    ..-
T Consensus       144 ~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~  223 (388)
T d1gdea_         144 EFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER  223 (388)
T ss_dssp             TTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred             CCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCe
Confidence                                                  889999999999999999997543321    11 1    122


Q ss_pred             eEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch------hhHHHHHHHHHHHHHHHH
Q 019543          145 DIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------KTMALRVEKQQDNAQKIA  218 (339)
Q Consensus       145 Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l------~~~~~r~~~~~~~a~~l~  218 (339)
                      .|+++||||.++.+|. +.||+++++ ++.+.+...........+......+...+      +.+....+.+.++...+.
T Consensus       224 ~i~~~S~SK~~~~~Gl-R~G~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (388)
T d1gdea_         224 TITVNGFSKTFAMTGW-RLGFVAAPS-WIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVW  301 (388)
T ss_dssp             EEEEEESTTTTTCGGG-CCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCChhhccCccc-cEEEEEeec-cchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhh
Confidence            5899999999986664 456887764 67777776665555555554433332222      223334444556666677


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCcccceeccccccC
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSH  296 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h  296 (339)
                      +.|.... +. +..|                ..|..+++.+.+ .....+|++.| ++.|+.+..|..+..         
T Consensus       302 ~~l~~~~-~~-~~~p----------------~gg~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~---------  354 (388)
T d1gdea_         302 KRLNEMG-LP-TVKP----------------KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---------  354 (388)
T ss_dssp             HHHHHTT-CC-CCCC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---------
T ss_pred             hhhhhcc-cc-ccCC----------------CceEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCC---------
Confidence            7776543 11 1111                124456666642 22345666654 566888877754321         


Q ss_pred             CCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhcC
Q 019543          297 ASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRTG  337 (339)
Q Consensus       297 ~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~~  337 (339)
                                  -.++.+|||++..  +.++-+++|.++|++.
T Consensus       355 ------------~~~~~iRis~~~~~e~l~~al~rL~~~l~e~  385 (388)
T d1gdea_         355 ------------AGEGYVRISYATAYEKLEEAMDRMERVLKER  385 (388)
T ss_dssp             ------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred             ------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence                        0347899999842  2344577788888764

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.76  E-value=1.7e-17  Score=155.86  Aligned_cols=241  Identities=15%  Similarity=0.155  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           56 TRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      +++++.+.+.+.+|    .+++++++++++++..++ +++++||+|++++|.|......+.                   
T Consensus        76 lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  155 (403)
T d1wsta1          76 LRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVD  155 (403)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHH
T ss_pred             HHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccc
Confidence            33444444444333    467788888899998654 589999999999999887654433                   


Q ss_pred             --------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc----cCCCe
Q 019543          112 --------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS----RPL----ELGAD  145 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g~~livD~a~a~g~~~----~~~----~~~~D  145 (339)
                                                            ++|+++|++||++||+|++|+...+.    .++    ..+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~  235 (403)
T d1wsta1         156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRV  235 (403)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCE
T ss_pred             cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcE
Confidence                                                  78999999999999999999743321    111    22346


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHH---Hh--chhh-HHHHHHHHHHHHHHHHH
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWIC---LR--GVKT-MALRVEKQQDNAQKIAE  219 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~---~~--~l~~-~~~r~~~~~~~a~~l~~  219 (339)
                      ++++|+||.++ +| .+.||+++++ ++++.+...........+.......   ..  ..+. +....+....+.+.+.+
T Consensus       236 i~~~S~SK~~~-~G-~RiG~~i~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (403)
T d1wsta1         236 IYLGTFSKILA-PG-FRIGWVAAHP-HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLE  312 (403)
T ss_dssp             EEEEESTTTTC-GG-GCCEEEEECH-HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccccceec-Cc-ccccccccch-HHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHH
Confidence            89999999985 55 5567888764 6777776655444333343322211   11  1111 23334444455566666


Q ss_pred             HHhCC--CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCC
Q 019543          220 FLASH--PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       220 ~L~~~--~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .|.+.  .++. +..|                ..|..+++.+.+......+++.|...|+.+..|..+..  ..      
T Consensus       313 ~L~~~~~~~~~-~~~p----------------~gg~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~--~~------  367 (403)
T d1wsta1         313 ALEEYMPEGVE-WTKP----------------EGGMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFV--HR------  367 (403)
T ss_dssp             HHHHHCCTTCE-ECCC----------------SBSSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGST--TC------
T ss_pred             HHHhhccCCeE-EeCC----------------CceeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcC--CC------
Confidence            66543  2222 2222                13556777776544455677777777888876643321  00      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCH---HHHHHHHHHHHh
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDV---NDLISDLDKALR  335 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~---~~li~~l~~al~  335 (339)
                                 -.++.+||+++..+.   ++.++.|.++|+
T Consensus       368 -----------~~~~~iRi~~~~~~~~~l~~al~rl~~~l~  397 (403)
T d1wsta1         368 -----------DKKNTMRLNFTYVPEETIREGVRRLAETIK  397 (403)
T ss_dssp             -----------CCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence                       135789999985433   344556666665

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.5e-17  Score=153.83  Aligned_cols=223  Identities=15%  Similarity=0.160  Sum_probs=139.3

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++++++.+.+.+..|    .+++++++++++|+..++ .+++|||.|++++|.|.+....++                  
T Consensus        72 ~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  151 (382)
T d1b5pa_          72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV  151 (382)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence            334444444444334    356888777799998654 589999999999999988765544                  


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-C---cccC--CCeEEEec
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-R---PLEL--GADIVMHS  150 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~---~~~~--~~Di~~~S  150 (339)
                                                         ++|+++|++||++||+||+|+...+. .   +...  .-.|+++|
T Consensus       152 ~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s  231 (382)
T d1b5pa_         152 PDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNG  231 (382)
T ss_dssp             CCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEE
T ss_pred             CCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEec
Confidence                                               88999999999999999999754331 1   1111  22488999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch------hh-HHHHHHHHHHHHHHHHHHHhC
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------KT-MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l------~~-~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +||.++.+|. +.||+++++ ++++.+...+.......+......+...+      +. +...++...++.+.+.+.++.
T Consensus       232 ~SK~~~~~Gl-R~G~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  309 (382)
T d1b5pa_         232 AAKAFAMTGW-RIGYACGPK-EVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA  309 (382)
T ss_dssp             STTTTTCGGG-CCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhccCcHh-heEEEEECH-HHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh
Confidence            9999987664 456787764 67777766665444444443322222111      11 223334444556666666665


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      . +++ +..|                ..|..+++.+.+ ..+...+.+.|.+.|+.+..|..+.                
T Consensus       310 ~-g~~-~~~p----------------~gg~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~----------------  355 (382)
T d1b5pa_         310 L-GLK-AVRP----------------SGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFA----------------  355 (382)
T ss_dssp             H-TCC-BCCC----------------SBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGT----------------
T ss_pred             c-CCe-EecC----------------CceEEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccC----------------
Confidence            4 232 1112                134567777632 2234556666777788887765321                


Q ss_pred             HHHhCCCCCCeEEEEecc
Q 019543          303 VRQARGLTEDLVRISVGI  320 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~  320 (339)
                             .++.+||+++.
T Consensus       356 -------~~~~iRis~~~  366 (382)
T d1b5pa_         356 -------AFGHVRLSYAT  366 (382)
T ss_dssp             -------CTTEEEEECCS
T ss_pred             -------CCCeEEEEEcC
Confidence                   23689999985

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.6e-17  Score=155.46  Aligned_cols=243  Identities=13%  Similarity=0.148  Sum_probs=148.7

Q ss_pred             chHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++++.+.+++..|.     +++++++++++|+..++ .+++|||+|+++++.|......++                 
T Consensus        84 ~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~  163 (420)
T d1vp4a_          84 VLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMD  163 (420)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhcccccccccccc
Confidence            4555566666655553     34667777789998644 589999999999999876543332                 


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c----c
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L----E  141 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~----~  141 (339)
                                                                ++|+++|++|++++|+|++|+...+...    .    .
T Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~  243 (420)
T d1vp4a_         164 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG  243 (420)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHC
T ss_pred             cchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccccc
Confidence                                                      8999999999999999999975433211    1    1


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch------hhHHHHHHHHHHH--
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------KTMALRVEKQQDN--  213 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l------~~~~~r~~~~~~~--  213 (339)
                      .+.-++++|++|+++ +| .+.||++++ +++++.+.......+...+....+.+...+      +.+....+..+++  
T Consensus       244 ~~~~i~~~s~sk~~~-~G-~RiG~~~~~-~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~  320 (420)
T d1vp4a_         244 PERVVLLNTFSKVLA-PG-LRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRT  320 (420)
T ss_dssp             TTTEEEEEESTTTTC-GG-GCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHH
T ss_pred             ccceeEEeccccccc-cc-ccccccccc-chhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcc
Confidence            233477888999875 45 567788876 478888877665554444444333222211      1122223333333  


Q ss_pred             --HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceecc
Q 019543          214 --AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       214 --a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p  291 (339)
                        .+.+.+.+.+.++++. ..|                ..|..+++.+.+..+..++++.|++.|+.+..|..+..-   
T Consensus       321 ~~~~~L~~~~~~~~g~~~-~~p----------------~gg~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~---  380 (420)
T d1vp4a_         321 VMLNALEEYFSDIPGVKW-VKS----------------EGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---  380 (420)
T ss_dssp             HHHHHHHHHSTTSTTCEE-CCC----------------SBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---
T ss_pred             cchhhhhhhhccCCCcEE-ecC----------------CceEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCC---
Confidence              3444555555566542 212                124467777754333445666777788888777543210   


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHH---HHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL---ISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~l---i~~l~~al~~  336 (339)
                                      +-..+.+|||++..+.+++   ++.|.++|++
T Consensus       381 ----------------~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~  412 (420)
T d1vp4a_         381 ----------------DEPSPSMRLSFCLPPDEKIVEGIKRLREVVLE  412 (420)
T ss_dssp             ----------------CCCCSEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence                            0135789999986554443   5666666653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.75  E-value=5.7e-17  Score=154.90  Aligned_cols=174  Identities=18%  Similarity=0.136  Sum_probs=122.5

Q ss_pred             CCCcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH----------------
Q 019543           45 GPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD----------------  107 (339)
Q Consensus        45 ~~~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~----------------  107 (339)
                      +...|+  ++|++.+||+++|+++|.++++.++||++|+.+ +.++++|||+|++... +..+.                
T Consensus        67 GDd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~  143 (456)
T d1c7ga_          67 GDEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRD  143 (456)
T ss_dssp             CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHHHTTEEEEECBCG
T ss_pred             cchhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHHHcCceeeecccc
Confidence            334577  799999999999999999999999999999985 5568999999997543 11111                


Q ss_pred             ---------------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcCCCC--
Q 019543          108 ---------------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIMSPV--  135 (339)
Q Consensus       108 ---------------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a~g~--  135 (339)
                                           ..++                             ++|.++|++||+++++|+++..+.  
T Consensus       144 ~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~  223 (456)
T d1c7ga_         144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAY  223 (456)
T ss_dssp             GGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred             ccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchh
Confidence                                 1111                             889999999999999999985321  


Q ss_pred             ---------CcCcc-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcC-----CCCChHHHH
Q 019543          136 ---------LSRPL-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEG-----SGLAPFDCW  194 (339)
Q Consensus       136 ---------~~~~~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~-----~~~~~~~a~  194 (339)
                               ....+       ...+|++++|++|.++++   .||+++++++.+.++++.+....+     ..++.....
T Consensus       224 ~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~---~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~  300 (456)
T d1c7ga_         224 FIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVN---IGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDME  300 (456)
T ss_dssp             HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS---SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHH
T ss_pred             hhcccccccCCCChhhhccccccccccEEEecccccccc---ceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHH
Confidence                     11111       124699999999999854   479999998888888877654332     123333322


Q ss_pred             HHHhchhhH--HHHHHHHHHHHHHHHHHHhCC
Q 019543          195 ICLRGVKTM--ALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       195 ~~~~~l~~~--~~r~~~~~~~a~~l~~~L~~~  224 (339)
                      .+..++...  ....+++.+++++|.+.|++.
T Consensus       301 a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         301 AMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            222223221  344666677889999999876

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=3.4e-18  Score=155.01  Aligned_cols=236  Identities=16%  Similarity=0.123  Sum_probs=149.2

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---HH-------------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---RL-------------------  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---~~-------------------  109 (339)
                      .+|.+++||+++|+++|.+++++++||++|+.+ +..+.++||.++++++.+....   ..                   
T Consensus        32 ~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (343)
T d1m6sa_          32 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD  111 (343)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecccccccccceeeccccccCccC
Confidence            679999999999999999999999999999975 5568899999998876542211   00                   


Q ss_pred             ----HH----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---c---ccCCCe
Q 019543          110 ----LS----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---P---LELGAD  145 (339)
Q Consensus       110 ----~~----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---~---~~~~~D  145 (339)
                          ..                                  ++|+++|++||+.+++|++++.+....   .   .....+
T Consensus       112 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~  191 (343)
T d1m6sa_         112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYAD  191 (343)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCS
T ss_pred             HHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccc
Confidence                00                                  789999999999999999986432211   0   111234


Q ss_pred             EEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC--hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhC
Q 019543          146 IVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLRGVKTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       146 i~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~--~~~a~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      ..+.+.+|..++.   .+|+++... +.+......+...+...+  ...++...........+.+...++..++.+.+..
T Consensus       192 ~~~~~~~~~~~g~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T d1m6sa_         192 SVMFCLSKGLCAP---VGSVVVGDR-DFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  267 (343)
T ss_dssp             EEEEESSSTTCCS---SCEEEEECH-HHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc---ccccccccH-HHHhhhHhhCcccccccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHH
Confidence            5555555555532   355666654 555555555544433333  2222222222222233444455566666666655


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVE  302 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~  302 (339)
                      +.... ...|                ..+.++.+.+++ ...+.+|++.|++.|+.++..                    
T Consensus       268 ~~~~~-~~~~----------------~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~~~--------------------  310 (343)
T d1m6sa_         268 IGYSV-NPED----------------VKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV--------------------  310 (343)
T ss_dssp             HTCBC-CGGG----------------CCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE--------------------
T ss_pred             hccCc-cCCC----------------CCceEEEEEeCCCcccHHHHHHHHHHCCCEEecC--------------------
Confidence            44321 1111                145688887754 345678899998888865411                    


Q ss_pred             HHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          303 VRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       303 ~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             .++.+||+++...+++.|+.+.++|++
T Consensus       311 -------~~~~iRi~~~~~~t~edid~~v~~l~~  337 (343)
T d1m6sa_         311 -------SDTEIRLVTHKDVSRNDIEEALNIFEK  337 (343)
T ss_dssp             -------ETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                   235799999987777777777777765

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.75  E-value=4.8e-17  Score=155.56  Aligned_cols=173  Identities=13%  Similarity=-0.000  Sum_probs=115.2

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHH-HHHH-HHHhcCCCCEEEEcCCCccchHHH----------------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMA-ALAA-VTHLLGTGEEIVAGDDLYGGTDRL----------------------  109 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~-A~~~-il~ll~~GD~Vi~~~~~y~~~~~~----------------------  109 (339)
                      .+.+.++|+.+|+++|++++++++||+. +|.+ +.++++|||+||++...+..+...                      
T Consensus        65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~~  144 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFI  144 (462)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCE
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccccccc
Confidence            4568899999999999999999999965 5555 556899999999998754332210                      


Q ss_pred             ------------HH----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----
Q 019543          110 ------------LS----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----  139 (339)
Q Consensus       110 ------------~~----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----  139 (339)
                                  ++                                  ++|+++|++||++|++|+||+.+....+    
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~  224 (462)
T d1c4ka2         145 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRN  224 (462)
T ss_dssp             EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGG
T ss_pred             CCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCc
Confidence                        00                                  9999999999999999999987643211    


Q ss_pred             ----------ccCCCeEEEeccccccccCCCceEEEEEEcChhH--------HHHHHHHHHhc-CCCCChHHHHHH---H
Q 019543          140 ----------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL--------AKELYFLQNAE-GSGLAPFDCWIC---L  197 (339)
Q Consensus       140 ----------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l--------~~~l~~~~~~~-~~~~~~~~a~~~---~  197 (339)
                                ...++|++++|++|.+++++  .|+++..++..+        .+.++.....+ ++..+....+.+   .
T Consensus       225 ~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~  302 (462)
T d1c4ka2         225 SSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNA  302 (462)
T ss_dssp             GCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             chhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHH
Confidence                      11245999999999999653  355665554322        12344433333 333333222211   1


Q ss_pred             h--chhhHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          198 R--GVKTMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       198 ~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      .  ..+...+..++..++++++++.+++.++..
T Consensus       303 ~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~  335 (462)
T d1c4ka2         303 AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMF  335 (462)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            1  122234556677788999999998876543

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.75  E-value=3.1e-17  Score=153.85  Aligned_cols=249  Identities=13%  Similarity=0.126  Sum_probs=149.0

Q ss_pred             CCcccCCCCchHHHHHHHHHhHh----C----CCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----
Q 019543           46 PYDYTRSGNPTRDALESLLAKLD----K----ADRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----  111 (339)
Q Consensus        46 ~~~y~r~~~~~~~~le~~la~~~----g----~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----  111 (339)
                      .+.|+.+.    .+|++.+++++    |    .+++++++++++|+.. +.++++|||+|++.++.|.+....+.     
T Consensus        61 ~~~Y~~g~----~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~  136 (394)
T d1c7na_          61 VLGYTGPT----EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERK  136 (394)
T ss_dssp             CCSSBCCC----HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCE
T ss_pred             CcCCCCCC----HHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHhhhhhc
Confidence            35566432    24556665554    4    3468888888999985 55699999999999998877654433     


Q ss_pred             --------------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC---
Q 019543          112 --------------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR---  138 (339)
Q Consensus       112 --------------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~---  138 (339)
                                                                        ++|+++|++||++||+||+|...++..   
T Consensus       137 ~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~  216 (394)
T d1c7na_         137 IIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEH  216 (394)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCC
T ss_pred             ccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccc
Confidence                                                              889999999999999999997543311   


Q ss_pred             -ccc------CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChH-HHHHHHhc---hh-hHHHH
Q 019543          139 -PLE------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF-DCWICLRG---VK-TMALR  206 (339)
Q Consensus       139 -~~~------~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~-~a~~~~~~---l~-~~~~r  206 (339)
                       ...      ...-+++.|+||.++.+|.+.|+++ ++++.+.+.+............+. ...++...   .+ ..++.
T Consensus       217 ~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  295 (394)
T d1c7na_         217 TVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII-IKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGC  295 (394)
T ss_dssp             CCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE-CCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchhhhhcccccceeeccccccccccccccccccc-ccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhhccc
Confidence             111      1224888999999997776655554 555567666666655443333322 22222111   12 23333


Q ss_pred             HHHHHHHHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCC
Q 019543          207 VEKQQDNAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGS  283 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~  283 (339)
                      .+...++.+.+.+.++. .++++. ..|                ..+..+++.+.+ .....+|++.| +..|+.+..|.
T Consensus       296 ~~~~~~~~~~~~~~l~~~~~~~~~-~~p----------------~g~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~  358 (394)
T d1c7na_         296 IKVIDKNQRIVKDFFEVNHPEIKA-PLI----------------EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGY  358 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSBC-CCC----------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGG
T ss_pred             ccccchhhhhhhhhhhccccceee-cCC----------------CceeEEEEECCCCCCCHHHHHHHHHHhCCEEEEcch
Confidence            44444555666666654 233321 111                124456766632 12345666655 45588777665


Q ss_pred             cccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC--HHHHHHHHHHHHhcC
Q 019543          284 VKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED--VNDLISDLDKALRTG  337 (339)
Q Consensus       284 ~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~--~~~li~~l~~al~~~  337 (339)
                      .+..   +                  .++.+|||++..+  .++-+++|.++|+++
T Consensus       359 ~Fg~---~------------------~~~~iRis~~~~~e~i~eal~rl~~~l~~L  393 (394)
T d1c7na_         359 IFGD---G------------------GIGFERINLAAPSSVIQESLERLNKALKDL  393 (394)
T ss_dssp             GGCG---G------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhCC---C------------------CCCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            4311   1                  3478999998532  234466777777653

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.74  E-value=3.2e-17  Score=154.51  Aligned_cols=250  Identities=18%  Similarity=0.135  Sum_probs=158.4

Q ss_pred             chHHHHHHHHHhHhCCC--e-EEEcCcHHHHHHHHH-----HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           55 PTRDALESLLAKLDKAD--R-ALCFTSGMAALAAVT-----HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~-~l~~~sG~~A~~~il-----~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ...++.++.+++++|++  + ++++++++.++..++     ..+++||+|++++..|++....+.               
T Consensus        66 ~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~  145 (408)
T d1t3ia_          66 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL  145 (408)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB
T ss_pred             HHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeec
Confidence            46677889999999974  3 555556677765432     246899999999888776543221               


Q ss_pred             -------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEecccc
Q 019543          112 -------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATK  153 (339)
Q Consensus       112 -------------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK  153 (339)
                                                           ++|.++|+++|+++++|.+|+.|... +...+++|++++|++|
T Consensus       146 ~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK  225 (408)
T d1t3ia_         146 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHK  225 (408)
T ss_dssp             CTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGG
T ss_pred             cccccccHHHhhhccCCCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEecccc
Confidence                                                 99999999999999999999998753 4445789999999999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHH---------------------HHhcCCCCChHHHHHHHhchhhH-----HHHH
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFL---------------------QNAEGSGLAPFDCWICLRGVKTM-----ALRV  207 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~---------------------~~~~~~~~~~~~a~~~~~~l~~~-----~~r~  207 (339)
                      ++|++|   .|+++.++ .........                     .++-..+.+....+.+..+++.+     +...
T Consensus       226 ~~gp~G---~g~l~v~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~  301 (408)
T d1t3ia_         226 MCAPTG---IGFLYGKE-EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIH  301 (408)
T ss_dssp             TTSCTT---CEEEEECH-HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCCC---ccccccch-hhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            976543   46777765 343322100                     00111122222222222233322     2223


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSL  287 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~  287 (339)
                      ++.....+++.+.++..+++..+ .|..+           ....+++++|.+.+.+ ...++..|...||.++.|..   
T Consensus       302 ~~~~~l~~~l~~~~~~~~~~~~~-~~~~~-----------~~~~~~iv~f~~~~~~-~~~v~~~L~~~gI~v~~G~~---  365 (408)
T d1t3ia_         302 NYEVELTHYLWQGLGQIPQLRLY-GPNPK-----------HGDRAALASFNVAGLH-ASDVATMVDQDGIAIRSGHH---  365 (408)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEE-SCCGG-----------GSCBCSEEEEEETTBC-HHHHHHHHHTTTEECBCSCT---
T ss_pred             HHHHHHHhHHhhhhccCcccccc-CCCcc-----------ccCcceEEEEEeCCCC-HHHHHHHHhhCCcEEecCcc---
Confidence            33445667778888888876533 23210           0125789999875432 33455666678899887753   


Q ss_pred             eeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          288 ISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       288 ~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                         |....|        ...+ .++.||||++..++++.|+.+.++|++
T Consensus       366 ---c~~~~~--------~~~~-~~g~vRiS~~~ynt~~did~li~~L~~  402 (408)
T d1t3ia_         366 ---CTQPLH--------RLFD-ASGSARASLYFYNTKEEIDLFLQSLQA  402 (408)
T ss_dssp             ---TCHHHH--------HHTT-CCCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             ---cccHHH--------Hhhc-CCccEEEECCCCCCHHHHHHHHHHHHH
Confidence               221111        1222 346899999999988888888888875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=4.5e-17  Score=150.69  Aligned_cols=252  Identities=13%  Similarity=0.126  Sum_probs=148.5

Q ss_pred             CcccCCCC-chHHHHHHHHHhHhCC----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH---------
Q 019543           47 YDYTRSGN-PTRDALESLLAKLDKA----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS---------  111 (339)
Q Consensus        47 ~~y~r~~~-~~~~~le~~la~~~g~----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~---------  111 (339)
                      +.|....+ +.++++.+.+++.+|.    +++++++++++++..++ .+++|||+|++++|.|.....++.         
T Consensus        30 ~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v  109 (361)
T d1d2fa_          30 FGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPV  109 (361)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHHHhhcceEEee
Confidence            34554333 3445555555555553    46888888899998654 588999999999999987765543         


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-  140 (339)
                                                                    ++|+++|+++|++||+|++|....+..    +. 
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~  189 (361)
T d1d2fa_         110 ALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS  189 (361)
T ss_dssp             ECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG
T ss_pred             cccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccc
Confidence                                                          799999999999999999997544321    11 


Q ss_pred             --cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH-HHhcCCC-CChHHHHHHHhchh----hHHHHHHHHHH
Q 019543          141 --ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL-QNAEGSG-LAPFDCWICLRGVK----TMALRVEKQQD  212 (339)
Q Consensus       141 --~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~-~~~~~~~-~~~~~a~~~~~~l~----~~~~r~~~~~~  212 (339)
                        ...-.+++.|+||.++.+|. .+|+++.......+..... ....+.. .+..........++    ......+..++
T Consensus       190 ~~~~~~~v~~~s~SK~~~~~g~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  268 (361)
T d1d2fa_         190 NVARGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKD  268 (361)
T ss_dssp             GTCCSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-cceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhcccccchh
Confidence              11224888999999986664 4677766554443333322 2222222 22222222222222    23344444555


Q ss_pred             HHHHHHHHHhC-CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-HHHHHHHHccC-CcceeecccCCccccee
Q 019543          213 NAQKIAEFLAS-HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-LALSKHVVETT-KYFSITVSFGSVKSLIS  289 (339)
Q Consensus       213 ~a~~l~~~L~~-~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-~~~~~~~~~~L-~~~~i~v~~G~~~s~~~  289 (339)
                      +.+.+.+.+.. .+++. +..|                ..|..+++.+.. .....+|+++| ++.|+.+..|..+..  
T Consensus       269 r~~~~~~~~~~~~~~~~-~~~p----------------~gg~~~~~~l~~~~~~~~~~~~~Ll~~~gv~v~pG~~F~~--  329 (361)
T d1d2fa_         269 NLTYIADKMNAAFPELN-WQIP----------------QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE--  329 (361)
T ss_dssp             HHHHHHHHHHHHCSSCC-CCCC----------------SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG--
T ss_pred             hHHHHHHHhhhhccccc-cccc----------------CceeEEEEEccCCCCCHHHHHHHHHHhCCEEEEeccccCC--
Confidence            56666665543 23332 1112                123456666631 12345677765 567998877654310  


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEEecc--CCHHHHHHHHHHHHhcC
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRISVGI--EDVNDLISDLDKALRTG  337 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~--e~~~~li~~l~~al~~~  337 (339)
                       +                  .++.||||++.  |+.++-++.|.++++++
T Consensus       330 -~------------------~~~~vRis~~~~~e~l~~al~rl~~~l~~l  360 (361)
T d1d2fa_         330 -E------------------GRGFVRLNAGCPRSKLEKGVAGLINAIRAV  360 (361)
T ss_dssp             -G------------------GTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -C------------------CCCEEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence             0                  34689999975  23344477888887764

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=8.7e-17  Score=150.85  Aligned_cols=251  Identities=14%  Similarity=0.040  Sum_probs=152.1

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCC----CeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKA----DRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------  111 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~----~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------  111 (339)
                      |....+..++++++.+.+++.+|.    +++++++++++++.++ ..++.+||+|++++|.|......+.          
T Consensus        66 Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~  145 (395)
T d1xi9a_          66 YGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYR  145 (395)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEe
Confidence            444433334556666666665564    4677777788998764 4589999999999999987665443          


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c---c
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L---E  141 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~---~  141 (339)
                                                                 ++|+++|++||++|++|+++....+...    .   .
T Consensus       146 ~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  225 (395)
T d1xi9a_         146 TIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK  225 (395)
T ss_dssp             EEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred             ccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCC
Confidence                                                       8999999999999999999976543221    1   1


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---hcCCCCChHHHHH---HH-hchhhHHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---AEGSGLAPFDCWI---CL-RGVKTMALRVEKQQDNA  214 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---~~~~~~~~~~a~~---~~-~~l~~~~~r~~~~~~~a  214 (339)
                      ..--|++.||||.++.+|.++|++++.++......+.....   ......+.....+   ++ ...+.+.+.++..+++.
T Consensus       226 ~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  305 (395)
T d1xi9a_         226 DVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERR  305 (395)
T ss_dssp             SSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            11238899999999988766654444444333333333221   1222333222222   22 22344566677778888


Q ss_pred             HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHcc-CCcceeecccCCcccceecc
Q 019543          215 QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVET-TKYFSITVSFGSVKSLISMP  291 (339)
Q Consensus       215 ~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p  291 (339)
                      +.+.+.|++++.+. +..|                ..|..+++.+..  .....+|+.. |++.|+.+..|..+..   .
T Consensus       306 ~~l~~~L~~~~~~~-~~~p----------------~gg~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~---~  365 (395)
T d1xi9a_         306 DYIYKRLNEIPGIS-TTKP----------------QGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---Y  365 (395)
T ss_dssp             HHHHHHHHTSTTEE-CCCC----------------CBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---G
T ss_pred             HHHHHHHHhCCCce-ecCC----------------CeeEEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCC---C
Confidence            99999999886543 1212                124455655531  1122344443 4567888776654311   0


Q ss_pred             ccccCCCCCHHHHHhCCCCCCeEEEEeccCCHH---HHHHHHHHHHhc
Q 019543          292 CFMSHASIPVEVRQARGLTEDLVRISVGIEDVN---DLISDLDKALRT  336 (339)
Q Consensus       292 ~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~---~li~~l~~al~~  336 (339)
                                        .++.+|||++. +.+   +-++.|.++|++
T Consensus       366 ------------------~~~~~Ris~~~-~~e~l~eal~rl~~~l~e  394 (395)
T d1xi9a_         366 ------------------GAGHFRAVFLP-PIEILEEAMDRFEKFMKE  394 (395)
T ss_dssp             ------------------GTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence                              24679999974 333   345666666653

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=2.3e-16  Score=146.61  Aligned_cols=236  Identities=15%  Similarity=0.152  Sum_probs=146.8

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++++++.+.+.+..|    .++.++++++++|+..+ .++++|||+|++++|.|........                  
T Consensus        69 ~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (375)
T d1o4sa_          69 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQ  148 (375)
T ss_dssp             HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcccccccccccccccccc
Confidence            444455555554444    34688888889999864 4589999999999999887654433                  


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c----cCCCeEEE
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L----ELGADIVM  148 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~----~~~~Di~~  148 (339)
                                                         ++|+++|++|+++||+||+|+.......    +    ...--|++
T Consensus       149 ~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~  228 (375)
T d1o4sa_         149 PSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYI  228 (375)
T ss_dssp             CCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEE
T ss_pred             chhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEE
Confidence                                               8899999999999999999976544211    1    12235899


Q ss_pred             eccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhh-HHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          149 HSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKT-MALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       149 ~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~-~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      +|+||.++.+|. +.||+++++ ...+.+...........+..........++. .....+...++.+.+.+.|++. ++
T Consensus       229 ~S~SK~~~l~G~-R~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~-g~  305 (375)
T d1o4sa_         229 NGFSKSHSMTGW-RVGYLISSE-KVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKM-GV  305 (375)
T ss_dssp             EESTTTTTCGGG-CCEEEECCH-HHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             eechhhccCCcc-ccccccccc-cchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHHHhc-Cc
Confidence            999999987664 567887775 5666666655555555554444333333332 2333444556666777777765 33


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHcc-CCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVET-TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~-L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      +. ..|                ..|..+++.+.+.  ..+++.+ |++.|+.+..|..+.                    
T Consensus       306 ~~-~~p----------------~gg~f~~~~~~~~--~~~~~~~ll~~~gV~v~pG~~F~--------------------  346 (375)
T d1o4sa_         306 KF-VEP----------------EGAFYLFFKVRGD--DVKFCERLLEEKKVALVPGSAFL--------------------  346 (375)
T ss_dssp             CC-CCC----------------SBSSEEEEECSSC--HHHHHHHHHHHHCEECEEGGGGT--------------------
T ss_pred             eE-ecC----------------CccEEEEEECCCC--HHHHHHHHHHhCCEEEEEccccC--------------------
Confidence            21 112                1345677877542  2234444 456788877664321                    


Q ss_pred             CCCCCCeEEEEeccCC--HHHHHHHHHHHHh
Q 019543          307 RGLTEDLVRISVGIED--VNDLISDLDKALR  335 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~--~~~li~~l~~al~  335 (339)
                         .++.+|||++..+  .++-++.|.+.|+
T Consensus       347 ---~~g~iRis~~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         347 ---KPGFVRLSFATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             ---CTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred             ---CCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence               2468999998521  2233444444443

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.72  E-value=5e-16  Score=147.24  Aligned_cols=240  Identities=14%  Similarity=0.125  Sum_probs=142.1

Q ss_pred             hHHHHHHHHHhHhC------CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           56 TRDALESLLAKLDK------ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g------~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +++++.+.+.+.+|      .+++++++++++|+..+ .++++|||+|++++|.|+.....+.                 
T Consensus        89 LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~  168 (431)
T d1m7ya_          89 FKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNG  168 (431)
T ss_dssp             HHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhc
Confidence            34444444444444      34677777779999864 4589999999999998875543221                 


Q ss_pred             -------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----cc--
Q 019543          112 -------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-----LE--  141 (339)
Q Consensus       112 -------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-----~~--  141 (339)
                                                                 ++|+++|++||++||+||+|+...+..+     ..  
T Consensus       169 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~  248 (431)
T d1m7ya_         169 FQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVL  248 (431)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHT
T ss_pred             ccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHh
Confidence                                                       8899999999999999999975433110     00  


Q ss_pred             -----------CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH--HHhch---h-hHH
Q 019543          142 -----------LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI--CLRGV---K-TMA  204 (339)
Q Consensus       142 -----------~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~--~~~~l---~-~~~  204 (339)
                                 ..--+++.|+||.++.+| .+.|+++++++ ++.........+....++....+  .+...   + .+.
T Consensus       249 ~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~  326 (431)
T d1m7ya_         249 KDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDD-MVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIA  326 (431)
T ss_dssp             TTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCH-HHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hhcccccccccCceEEEEecCcccccCCC-Cccceeccchh-hhHHHHHHHhccccccccccchhhhhhccchhhhhhhh
Confidence                       011388999999998766 45678888764 44333333323333333332221  11111   1 234


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC------HHHHHHHHccC-Cccee
Q 019543          205 LRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------LALSKHVVETT-KYFSI  277 (339)
Q Consensus       205 ~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~------~~~~~~~~~~L-~~~~i  277 (339)
                      +.+++.+++.+.+.+.|+. .+++.+ -|                ..|..+|+.+..      .....+|+++| ++.|+
T Consensus       327 ~~~~~~~~~~~~l~~~L~~-~gi~~~-~p----------------~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV  388 (431)
T d1m7ya_         327 ENHKRLKQRQKKLVSGLQK-SGISCL-NG----------------NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHL  388 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TTCEEC-CC----------------CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCE
T ss_pred             hhhhhhhhhhhhhhhhhhc-CCcEEe-cC----------------CceeEEEEECccccccCcccCHHHHHHHHHHHCCE
Confidence            4445556667778888876 355421 11                124456666532      23445666665 45688


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCC---HHHHHHHHHHHHhc
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIED---VNDLISDLDKALRT  336 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~---~~~li~~l~~al~~  336 (339)
                      .+..|..+.    +                 -.++.+|||++...   .++-+++|.++|++
T Consensus       389 ~v~PG~~F~----~-----------------~~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~  429 (431)
T d1m7ya_         389 NISPGSSCH----C-----------------TEPGWFRVCFANLPERTLDLAMQRLKAFVGE  429 (431)
T ss_dssp             ECEEGGGGT----C-----------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccC----C-----------------CCCCEEEEEeCcCCHHHHHHHHHHHHHHHHH
Confidence            777664321    1                 13478999997433   24445666666654

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.72  E-value=5.8e-16  Score=146.67  Aligned_cols=225  Identities=12%  Similarity=0.104  Sum_probs=136.2

Q ss_pred             CCeEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH-------------------------------------
Q 019543           70 ADRALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS-------------------------------------  111 (339)
Q Consensus        70 ~~~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~-------------------------------------  111 (339)
                      .++.++++++++|+..+ .++++|||+|++++|.|......+.                                     
T Consensus       108 ~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~  187 (428)
T d1iaya_         108 PERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI  187 (428)
T ss_dssp             TTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCC
Confidence            34677777778999864 4589999999999998876543221                                     


Q ss_pred             -----------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c------------cCCCeEEEeccc
Q 019543          112 -----------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L------------ELGADIVMHSAT  152 (339)
Q Consensus       112 -----------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~------------~~~~Di~~~S~s  152 (339)
                                             ++|+++|++||++||+|++|+...+..+    +            ...-.+++.|+|
T Consensus       188 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~S  267 (428)
T d1iaya_         188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLS  267 (428)
T ss_dssp             CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEEST
T ss_pred             CceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCC
Confidence                                   8899999999999999999975433210    0            011238899999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHH-HHH-h---chhh-HHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCW-ICL-R---GVKT-MALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~-~~~-~---~l~~-~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      |.++.+| .+.|++++.++.+.+.++.... ++....+.... .+. .   .++. +.+..+...++.+.+.+.|+.. +
T Consensus       268 K~~~~~G-lRiG~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-g  344 (428)
T d1iaya_         268 KDMGLPG-FRVGIIYSFNDDVVNCARKMSS-FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-G  344 (428)
T ss_dssp             TTSSCGG-GCEEEEEESCHHHHHHHHHHHT-TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CcccCCC-cccccccccccchhhhhhhhhc-ccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-C
Confidence            9998766 4567888776666665554432 23222222222 111 1   1122 2334445556677788888753 4


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC------CHHHHHHHHccC-CcceeecccCCcccceeccccccCCCC
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG------SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~------~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      ++. .-|                ..|..+|+.+.      ..+...+|++.| ++.|+.+..|..+.    +        
T Consensus       345 i~~-~~p----------------~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~----~--------  395 (428)
T d1iaya_         345 IKC-LKN----------------NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE----C--------  395 (428)
T ss_dssp             CCB-CCC----------------SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGT----C--------
T ss_pred             CEE-ecC----------------CcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcC----C--------
Confidence            432 112                13455676653      223445666665 45688877664321    1        


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCH---HHHHHHHHHHHh
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDV---NDLISDLDKALR  335 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~---~~li~~l~~al~  335 (339)
                               -.++.+|||++..+.   ++-+++|.++|.
T Consensus       396 ---------~~~g~~Ris~a~~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         396 ---------QEPGWFRVCFANMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             ---------SSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCEEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence                     135789999975433   334556666654

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.71  E-value=2.4e-16  Score=145.49  Aligned_cols=237  Identities=14%  Similarity=0.078  Sum_probs=148.0

Q ss_pred             CCCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           52 SGNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +..+...+|++.+|+++|.+  .++++++++.++..++.++.+++.+ +..+.|........                  
T Consensus        54 Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~~~~~~-v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~  132 (355)
T d1lc5a_          54 YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAM-IVTPGFAEYGRALAQSGCEIRRWSLREADGWQ  132 (355)
T ss_dssp             CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCSEEE-EEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhcccccc-ccCCccceeccccccccccceeeeeeccCCcc
Confidence            33445578999999999865  4666555567766665544444333 33444443221111                  


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--c--c--cCCCeEEEecc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--P--L--ELGADIVMHSA  151 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~--~--~~~~Di~~~S~  151 (339)
                                                        ++|+++|++|++++|+|+++.......  .  .  .....+++.|+
T Consensus       133 ~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~  212 (355)
T d1lc5a_         133 LTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL  212 (355)
T ss_dssp             CCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEES
T ss_pred             ceeeeeeccccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeeccc
Confidence                                              789999999999999999996432211  1  1  12235899999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHhCCCCce
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---TMALRVEKQQDNAQKIAEFLASHPRVK  228 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---~~~~r~~~~~~~a~~l~~~L~~~~~i~  228 (339)
                      ||.++.+|. +.||++++++.+.+.++..+  .....+.....++...++   .+..++++.+++.+++.+.|.+.+++.
T Consensus       213 SK~~~l~Gl-R~G~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (355)
T d1lc5a_         213 TKFYAIPGL-RLGYLVNSDDAAMARMRRQQ--MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLT  289 (355)
T ss_dssp             TTTTTCTTT-CCEEEECCCHHHHHHHHHHS--CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred             ccccccccc-cccceeccchhhhHHHHhhc--CCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCcE
Confidence            999987664 46788777654545544332  234455555544444443   456667777788888989999887764


Q ss_pred             EEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC
Q 019543          229 KVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG  308 (339)
Q Consensus       229 ~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g  308 (339)
                        .+|.                .+..+++.++..  ..++++.|.+.|+.++.|..+.                     +
T Consensus       290 --~~p~----------------~~~f~~~~~~~~--~~~~~~~L~~~gv~vr~~~~f~---------------------~  328 (355)
T d1lc5a_         290 --VYPG----------------RANYLLLRCERE--DIDLQRRLLTQRILIRSCANYP---------------------G  328 (355)
T ss_dssp             --ECCC----------------SSSEEEEEESCT--TCCHHHHHHTTTEECEECTTST---------------------T
T ss_pred             --ECCC----------------CCEEEEEECCCC--HHHHHHHHHHCCcEEEeCccCC---------------------C
Confidence              2342                356677777542  2356666777788876554221                     1


Q ss_pred             CCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          309 LTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       309 ~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ..++.+|||+|.   ++.++.+.+||++
T Consensus       329 ~~~~~iRis~~~---~~e~~~li~aL~~  353 (355)
T d1lc5a_         329 LDSRYYRVAIRS---AAQNERLLAALRN  353 (355)
T ss_dssp             CCTTEEEEECCC---HHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCC---HHHHHHHHHHHHH
Confidence            245789999983   2334566666664

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=8.2e-17  Score=150.49  Aligned_cols=252  Identities=19%  Similarity=0.152  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-H----hcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGMAALAAVT-H----LLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-~----ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ..+++++.+|+++|++  ++++++|+++++..++ .    .+++||+|++++..|++....++                 
T Consensus        49 ~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~  128 (391)
T d1p3wa_          49 AVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRN  128 (391)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCC
Confidence            4567788999999986  5777777788876433 2    36899999999999887654332                 


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|+++||+||+++++|++|+.|.. .+....++|+++.|++|++|
T Consensus       129 ~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g  208 (391)
T d1p3wa_         129 GIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG  208 (391)
T ss_dssp             SCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTS
T ss_pred             CeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccC
Confidence                                              9999999999999999999998865 34445688999999999987


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHH-------HHh-cCCCCChHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFL-------QNA-EGSGLAPFDCWIC---LRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~-------~~~-~~~~~~~~~a~~~---~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +++   .|+++.+++ ........       ... .+....+....+.   ....+......++.++...++.+.|..++
T Consensus       209 ~~g---~g~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  284 (391)
T d1p3wa_         209 PKG---IGALYVRRK-PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIE  284 (391)
T ss_dssp             CSS---CEEEEECBT-TBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTST
T ss_pred             CCc---eEEEEEecc-hhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Confidence            654   366666653 22211110       000 1111111111111   11223334445555666777777777776


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      .+. +..+. +            .+...++.|.+... ....+...|+  +++++.|...+..      .+.  +.....
T Consensus       285 ~~~-~~~~~-~------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~v~~G~~c~~~------~~~--~~~~l~  339 (391)
T d1p3wa_         285 EVY-LNGDL-E------------HGAPNILNVSFNYV-EGESLIMALK--DLAVSSGSACTSA------SLE--PSYVLR  339 (391)
T ss_dssp             TEE-ECSCT-T------------TSCTTEEEEEETTS-CHHHHHHHTT--TEECBCCCC------------C--CCHHHH
T ss_pred             Cee-ecccc-c------------ccCceEEEEEeCCC-ChHHHHHHhC--CCEEEccccccCC------ccc--hhHHHH
Confidence            542 22211 0            12346777766433 2345666665  4566655422111      111  011223


Q ss_pred             hCCCCC----CeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          306 ARGLTE----DLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~----~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      .+|+++    +.||||++..++++.|+.+.++|++
T Consensus       340 ~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~  374 (391)
T d1p3wa_         340 ALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRK  374 (391)
T ss_dssp             HHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            445542    6799999987766666666666553

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.71  E-value=3.5e-16  Score=147.62  Aligned_cols=210  Identities=15%  Similarity=0.060  Sum_probs=134.9

Q ss_pred             chHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKA-----DRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++++.+.+++.+|.     +++++++++++|+..++ .+++|||.|++++|.|......+.                 
T Consensus        70 ~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  149 (418)
T d2r5ea1          70 RLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTG  149 (418)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCS
T ss_pred             HHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccc
Confidence            4566666666666552     45777777799998654 589999999999999987654332                 


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-cc-
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-LE-  141 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~-~~-  141 (339)
                                                                  ++|+++|++||++||+|++|....+..    . .. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~  229 (418)
T d2r5ea1         150 GTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTL  229 (418)
T ss_dssp             SCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCcccccccc
Confidence                                                        889999999999999999997544321    1 11 


Q ss_pred             ---CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhc----------hh-hHHHHH
Q 019543          142 ---LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRG----------VK-TMALRV  207 (339)
Q Consensus       142 ---~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~----------l~-~~~~r~  207 (339)
                         ...-+++.|+||.++.+|.+ .||+++++ ++++.+...........+......+...          .+ .+....
T Consensus       230 ~~~~~~~i~~~S~SK~~~~pGlR-iG~~~~~~-~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  307 (418)
T d2r5ea1         230 PGMWERTITIGSAGKTFSLTGWK-IGWAYGPE-ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSIS  307 (418)
T ss_dssp             TTTGGGEEEEEEHHHHTTCGGGC-CEEEESCH-HHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHH
T ss_pred             ccccceeeeeecCCccccCCCcc-cccccccc-hhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHH
Confidence               12248889999999887755 56777764 6777777666544444454332222111          11 234445


Q ss_pred             HHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC------------HHHHHHHHccC-Cc
Q 019543          208 EKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS------------LALSKHVVETT-KY  274 (339)
Q Consensus       208 ~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~------------~~~~~~~~~~L-~~  274 (339)
                      +..+.+.+.+.+.|++. +++ +..|.                .|..+++.+.+            .....+|++.| ++
T Consensus       308 ~~~~~~r~~l~~~L~~~-g~~-~~~P~----------------gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  369 (418)
T d2r5ea1         308 GELMAKRDYMASFLAEV-GMN-PTVPQ----------------GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKS  369 (418)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCE-EEECS----------------BSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHhhHhhc-CCc-ccCCC----------------ceeEEEEEcccccccccchhcccccCHHHHHHHHHHH
Confidence            55667778888889876 443 33341                23444554421            12334666655 55


Q ss_pred             ceeecccCCc
Q 019543          275 FSITVSFGSV  284 (339)
Q Consensus       275 ~~i~v~~G~~  284 (339)
                      .|+.+..|..
T Consensus       370 ~gV~v~PG~~  379 (418)
T d2r5ea1         370 VGLQGIPPSA  379 (418)
T ss_dssp             HSEECBCGGG
T ss_pred             CCEEEeCchh
Confidence            6888877754

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=8.3e-16  Score=143.44  Aligned_cols=243  Identities=18%  Similarity=0.188  Sum_probs=149.5

Q ss_pred             chHHHHHHHHHhHhC----CCeEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDK----ADRALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g----~~~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      ++++++.+.+.+..|    .+++++++++++++..++ .++++||.|++++|.|......+.                  
T Consensus        68 ~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (389)
T d2gb3a1          68 ELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFA  147 (389)
T ss_dssp             HHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCccccccccccccccc
Confidence            445556666655545    346777777789988654 589999999999999987665443                  


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c--cCCCeEEEecc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L--ELGADIVMHSA  151 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~--~~~~Di~~~S~  151 (339)
                                                        ++|+++|++||++||+||+|+.-.....    .  .....+++.|+
T Consensus       148 ~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~  227 (389)
T d2gb3a1         148 IPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSV  227 (389)
T ss_dssp             CCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEES
T ss_pred             hhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccc
Confidence                                              9999999999999999999975433211    1  11235888999


Q ss_pred             ccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH---HHhchh-hHHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          152 TKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLRGVK-TMALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       152 sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~---~~~~l~-~~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      ||.++.+|.+ .||++++++.+...+..... .....++....+   ++..-+ .++...+..+++.+.+.+.|++++.+
T Consensus       228 sK~~~~~GlR-iG~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~  305 (389)
T d2gb3a1         228 SKKFSACGAR-VGCLITRNEELISHAMKLAQ-GRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHGLK  305 (389)
T ss_dssp             TTTTTCGGGC-CEEEECSCHHHHHHHHHHHH-HSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccCcccc-eeeeeccchhHHHHHhhhhh-ccccccccccccccccccccchhcccccccccccchhhhhhhhhhccc
Confidence            9999988755 56777776555444444332 333334433222   222222 23445566677888899999988653


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC------CcceeecccCCcccceeccccccCCCCCH
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT------KYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L------~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      . ...|                ..|..+++.++.. ...+|++.|      ...++.+..|..+..  .|          
T Consensus       306 ~-~~~p----------------~~g~~~~~~lp~~-~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~--~~----------  355 (389)
T d2gb3a1         306 R-FTKP----------------SGAFYITAELPVE-DAEEFARWMLTDFNMDGETTMVAPLRGFYL--TP----------  355 (389)
T ss_dssp             C-BCCC----------------SBSSEEEEECSSS-CHHHHHHHHHHSCCBTTEEEECEEGGGGCS--ST----------
T ss_pred             c-ccCC----------------CceEEEEEeCCCC-CHHHHHHHHHHhhhhhhCCEEEEeCccccc--CC----------
Confidence            2 1122                1456777776432 123344332      334555544432111  11          


Q ss_pred             HHHHhCCCCCCeEEEEeccCCHH---HHHHHHHHHHhc
Q 019543          302 EVRQARGLTEDLVRISVGIEDVN---DLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~~~~lRisvg~e~~~---~li~~l~~al~~  336 (339)
                            |..++.+|||++. +.+   +-++.|.++|++
T Consensus       356 ------~~~~~~iRis~~~-~~~~l~~a~~~L~~~lk~  386 (389)
T d2gb3a1         356 ------GLGKKEIRIACVL-EKDLLSRAIDVLMEGLKM  386 (389)
T ss_dssp             ------TTTSSEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCEEEEEEcC-CHHHHHHHHHHHHHHHHH
Confidence                  2246789999974 333   346777777765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.8e-16  Score=142.89  Aligned_cols=237  Identities=16%  Similarity=0.121  Sum_probs=150.9

Q ss_pred             cCCCCchHHHHHHHHHhHhCC--CeEEEcCcHHHHHHHHH-HhcCCCC-EEEEcCCCccchHHHHH--------------
Q 019543           50 TRSGNPTRDALESLLAKLDKA--DRALCFTSGMAALAAVT-HLLGTGE-EIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~g~--~~~l~~~sG~~A~~~il-~ll~~GD-~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      .|+-.+...+|++++|+++|.  ++.++++++++|+..++ ++++||| .|+++.+.|.......+              
T Consensus        51 ~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~  130 (354)
T d1fg7a_          51 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN  130 (354)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT
T ss_pred             hcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhccCceeeccccccc
Confidence            355556667999999999986  46777777789998655 5889999 58888898876654333              


Q ss_pred             ------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c-cCCCeEEEec
Q 019543          112 ------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L-ELGADIVMHS  150 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~-~~~~Di~~~S  150 (339)
                                                          +.+.+.+ +++..+++||++........    . .....+++.|
T Consensus       131 ~~~d~~~l~~~~~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S  209 (354)
T d1fg7a_         131 WQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  209 (354)
T ss_dssp             SCCCHHHHHTSCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             cccchhhhhhcccccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhccccccchhhcccccceEEeC
Confidence                                                4444444 46888888888753322111    1 1223588899


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH--HHhc---hhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI--CLRG---VKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~--~~~~---l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      |||.++.+|. +.||+++++ ++++.+.+.+.  ...++......  +...   .+....+.++..+..+++.+.+.+++
T Consensus       210 ~SK~~~laGl-RiGy~i~~~-~~i~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~  285 (354)
T d1fg7a_         210 LSKAFALAGL-RCGFTLANE-EVINLLMKVIA--PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIP  285 (354)
T ss_dssp             SSSTTCCGGG-CCEEEEECH-HHHHHHHHHSC--SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CccccCCCcc-ccccccccc-hhhhhhhhhcC--ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCC
Confidence            9999987765 456887764 67777765432  23333322221  1211   22344555666677788888888888


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      ++..+ +|.                .+..+++.+++.   .++.+.|...|+.++.|+.+     +              
T Consensus       286 ~~~~~-~p~----------------~~~f~~~~~~~~---~~~~~~L~~~gIlvr~~~~~-----~--------------  326 (354)
T d1fg7a_         286 CVEQV-FDS----------------ETNYILARFKAS---SAVFKSLWDQGIILRDQNKQ-----P--------------  326 (354)
T ss_dssp             TEEEE-CCC----------------SSSEEEEEETTH---HHHHHHHHHTTEECEECTTS-----T--------------
T ss_pred             Cccee-CCC----------------CceEEEEeCCCH---HHHHHHHHHCCcEEecCCCC-----C--------------
Confidence            76433 342                456778888654   35667777778887644321     1              


Q ss_pred             hCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          306 ARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                        | .++.+|||+|.+   +..+.+.+||++
T Consensus       327 --~-~~~~lRisigt~---ee~~~~l~aLka  351 (354)
T d1fg7a_         327 --S-LSGCLRITVGTR---EESQRVIDALRA  351 (354)
T ss_dssp             --T-CTTEEEEECCCH---HHHHHHHHHHHT
T ss_pred             --C-CCCEEEEEeCCH---HHHHHHHHHHhh
Confidence              1 247899999843   334567777764

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=8.5e-16  Score=142.30  Aligned_cols=221  Identities=15%  Similarity=0.045  Sum_probs=149.4

Q ss_pred             HHHHHHHHHhHhCCC--eEEEcCcHHHHHHHH-HHhcCCCCEEEEcCCCccchHHHHH----------------------
Q 019543           57 RDALESLLAKLDKAD--RALCFTSGMAALAAV-THLLGTGEEIVAGDDLYGGTDRLLS----------------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g~~--~~l~~~sG~~A~~~i-l~ll~~GD~Vi~~~~~y~~~~~~~~----------------------  111 (339)
                      ..+|++.+|++++.+  ++++++++++|+..+ ..++++||.|+++++.|........                      
T Consensus        63 ~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  142 (368)
T d1v2da_          63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDL  142 (368)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCH
T ss_pred             CHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCH
Confidence            668999999999864  688888889999854 4689999999999998887654433                      


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcc------cCCCeEEEecccc
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPL------ELGADIVMHSATK  153 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~------~~~~Di~~~S~sK  153 (339)
                                                      ++|+++|++||+++++|++++........      .....+++.|+||
T Consensus       143 ~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk  222 (368)
T d1v2da_         143 SALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGK  222 (368)
T ss_dssp             HHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHH
T ss_pred             HHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccc
Confidence                                            88999999999999999999765443221      1123578889999


Q ss_pred             ccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch------hhHHHHHHHHHHHHHHHHHHHhCCCCc
Q 019543          154 FIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV------KTMALRVEKQQDNAQKIAEFLASHPRV  227 (339)
Q Consensus       154 ~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l------~~~~~r~~~~~~~a~~l~~~L~~~~~i  227 (339)
                      .++.+|. +.|+++.++ ++.+.+...+...+...+......+...+      +.++...+..+++.+++.+.|+++ ++
T Consensus       223 ~~~~~G~-R~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~  299 (368)
T d1v2da_         223 RLEATGY-RVGWIVGPK-EFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GL  299 (368)
T ss_dssp             HTTCGGG-CCEEEECCT-TTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             ccccccc-ccccccccc-cccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-Cc
Confidence            8887765 456777765 67888877776666666654432222222      223444555677788888999876 44


Q ss_pred             eEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhC
Q 019543          228 KKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQAR  307 (339)
Q Consensus       228 ~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~  307 (339)
                      + +..|                ..+..+++.+.+. ++.+++   ++.|+.++.|..+..- .                 
T Consensus       300 ~-~~~p----------------~g~~~~~~~l~~~-~~~~ll---~~~gI~v~pg~~F~~~-~-----------------  340 (368)
T d1v2da_         300 R-VYVP----------------EGTYFLMAELPGW-DAFRLV---EEARVALIPASAFYLE-D-----------------  340 (368)
T ss_dssp             C-EECC----------------SBSSEEEEECTTC-CHHHHH---HHTCEECEEGGGGCSS-S-----------------
T ss_pred             E-EecC----------------CceeEEEEeCCcc-HHHHHH---HhCCEEEEechhhCCC-C-----------------
Confidence            3 2222                1345677777643 344443   3468877766433210 0                 


Q ss_pred             CCCCCeEEEEecc
Q 019543          308 GLTEDLVRISVGI  320 (339)
Q Consensus       308 g~~~~~lRisvg~  320 (339)
                       ..++.+|||++.
T Consensus       341 -~~~~~iRis~~~  352 (368)
T d1v2da_         341 -PPKDLFRFAFCK  352 (368)
T ss_dssp             -CCTTEEEEECCS
T ss_pred             -CCCCEEEEEecC
Confidence             145789999974

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.70  E-value=1e-15  Score=143.97  Aligned_cols=225  Identities=10%  Similarity=0.075  Sum_probs=136.9

Q ss_pred             CeEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH--------------------------------------
Q 019543           71 DRALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------  111 (339)
Q Consensus        71 ~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------  111 (339)
                      +++++++++++|+.. +.++++|||+|++++|.|......++                                      
T Consensus       102 ~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  181 (412)
T d1bw0a_         102 DNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVT  181 (412)
T ss_dssp             GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEE
T ss_pred             CeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhhccccccccc
Confidence            468888888999975 45689999999999999987765544                                      


Q ss_pred             ---------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----c-c------cC-CCeEEEeccccccccCCCceEE
Q 019543          112 ---------------RKIAEMAHAHGALLLVDNSIMSPVLSR----P-L------EL-GADIVMHSATKFIAGHSDVMAG  164 (339)
Q Consensus       112 ---------------~~I~~la~~~g~~livD~a~a~g~~~~----~-~------~~-~~Di~~~S~sK~l~g~~~~~gG  164 (339)
                                     ++|+++|++||++||+|++|+.-.+..    . .      .. ..-++++|+||.++.+|.+. |
T Consensus       182 np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~Rv-G  260 (412)
T d1bw0a_         182 NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-G  260 (412)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-E
T ss_pred             cccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCc-c
Confidence                           889999999999999999996433211    0 0      00 11377889999999888665 5


Q ss_pred             EEEEcCh-----hHHHHHHHHHHhcCCCCChHHHHHHH---hch-hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCC
Q 019543          165 VLAVKGE-----RLAKELYFLQNAEGSGLAPFDCWICL---RGV-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGL  235 (339)
Q Consensus       165 ~v~~~~~-----~l~~~l~~~~~~~~~~~~~~~a~~~~---~~l-~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~  235 (339)
                      |++++++     .++..............++..+.++.   ... +.+....+++.++.+.+.+.|.+.+++.. ..|. 
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~-~~p~-  338 (412)
T d1bw0a_         261 WLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP-TMPR-  338 (412)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE-CCCC-
T ss_pred             cccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee-cCCC-
Confidence            6665532     22222222222233222333222221   222 23455666777888889999988877653 2221 


Q ss_pred             CCCCchHhHhhhcCCCcceEEEeeC-----CHHHHHHHHccC-CcceeecccCCcccceeccccccCCCCCHHHHHhCCC
Q 019543          236 PEHPGHELHYSQAKGAGSVLSFLTG-----SLALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGL  309 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~ivs~~~~-----~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~  309 (339)
                                     .|..+++.++     +.....+|++.| ++.|+.+..|..+                      | 
T Consensus       339 ---------------gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F----------------------g-  380 (412)
T d1bw0a_         339 ---------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIF----------------------H-  380 (412)
T ss_dssp             ---------------BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGG----------------------T-
T ss_pred             ---------------CceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEecccc----------------------C-
Confidence                           2334555443     112345666665 4568877665432                      1 


Q ss_pred             CCCeEEEEeccCC--HHHHHHHHHHHHhc
Q 019543          310 TEDLVRISVGIED--VNDLISDLDKALRT  336 (339)
Q Consensus       310 ~~~~lRisvg~e~--~~~li~~l~~al~~  336 (339)
                      .++.+|||++...  .++-+++|.++|++
T Consensus       381 ~~g~iRis~~~~~e~l~eal~Rl~~~l~~  409 (412)
T d1bw0a_         381 APGFTRLTTTRPVEVYREAVERIKAFCQR  409 (412)
T ss_dssp             CTTEEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            2468999997521  22234555555553

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4e-16  Score=144.38  Aligned_cols=252  Identities=23%  Similarity=0.225  Sum_probs=163.1

Q ss_pred             CcccCC--CCchHHHHHH----HHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH-----------
Q 019543           47 YDYTRS--GNPTRDALES----LLAKLDKADRALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD-----------  107 (339)
Q Consensus        47 ~~y~r~--~~~~~~~le~----~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~-----------  107 (339)
                      |...|+  ++...+++|+    +..++||++.+-+ ..||+.|+.+ ++++++|||.|+..+...+|..           
T Consensus        58 ~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~  137 (416)
T d1dfoa_          58 YPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGK  137 (416)
T ss_dssp             ETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHH
T ss_pred             CCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCc
Confidence            444443  5566677764    4567999997766 7799999986 5569999999999876544421           


Q ss_pred             ---------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcCC-----CCCcCccc
Q 019543          108 ---------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIMS-----PVLSRPLE  141 (339)
Q Consensus       108 ---------------------~~~~--------------------~~I~~la~~~g~~livD~a~a~-----g~~~~~~~  141 (339)
                                           .+.+                    +++.++|++.|++|++|.+|-.     |.+.+|++
T Consensus       138 ~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~  217 (416)
T d1dfoa_         138 LYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP  217 (416)
T ss_dssp             HSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT
T ss_pred             eEEEEecccCCccCccHHHHHHHHHHhccceEEecccccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc
Confidence                                 1111                    9999999999999999999954     45678888


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcC--hhHHHHHHHHHH--hcCCCCChHHHHHHH---hch-hhHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKG--ERLAKELYFLQN--AEGSGLAPFDCWICL---RGV-KTMALRVEKQQDN  213 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~--~~l~~~l~~~~~--~~~~~~~~~~a~~~~---~~l-~~~~~r~~~~~~~  213 (339)
                      . +|++++|++|+|.||   .||+|.+++  +++.+++.....  ..|.......++.+.   ..+ ..+....++..+|
T Consensus       218 ~-aDvvt~tThKtlrGP---rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~N  293 (416)
T d1dfoa_         218 H-AHVVTTTTHKTLAGP---RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKN  293 (416)
T ss_dssp             T-SSEEEEESSSTTCCC---SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             c-cceeeeehhhcccCC---CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            6 699999999999976   589999874  355555544321  122222222232221   222 3457788888999


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHHccCCcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      ++.|++.|.+. +++.+.  +              ...++++.+.+.+.. ...++.+.|...||.++--      ..|.
T Consensus       294 A~~La~~L~~~-G~~iv~--g--------------gTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn------~iP~  350 (416)
T d1dfoa_         294 AKAMVEVFLER-GYKVVS--G--------------GTDNHLFLVDLVDKNLTGKEADAALGRANITVNKN------SVPN  350 (416)
T ss_dssp             HHHHHHHHHHT-TCEEGG--G--------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEC------CCTT
T ss_pred             HHHHHHHHHhC-Cccccc--C--------------CCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCC------cCCC
Confidence            99999999886 443322  1              235678888773221 2234444555667766521      0121


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEe--------ccCCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisv--------g~e~~~~li~~l~~al~~  336 (339)
                      -. .   +       ...++-|||..        +.++++++.+-+.++|+.
T Consensus       351 d~-~---~-------~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         351 DP-K---S-------PFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             CS-S---C-------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CC-C---C-------CCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            00 0   0       01345689986        347778888888888763

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-16  Score=146.87  Aligned_cols=244  Identities=18%  Similarity=0.203  Sum_probs=148.5

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      ...++.++.|++++|.+  ..++| .||+.|+.+ +..++.+||++++....+.+......                   
T Consensus        52 ~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (388)
T d1h0ca_          52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHY  131 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccccccccccccCCcccc
Confidence            45788999999999985  34555 567999875 55689999999987765444321110                   


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++|++||+++++|++++.|.. .+...+++|++++|.+|+++|+
T Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp  211 (388)
T d1h0ca_         132 TLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAP  211 (388)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCC
T ss_pred             chHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceecccccccccCC
Confidence                                            9999999999999999999998865 3445678999999999999988


Q ss_pred             CCceEEEEEEcChhHHHHHHH--------------HHHh---------cCCCCChHHHHHHHhchhh-----HHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYF--------------LQNA---------EGSGLAPFDCWICLRGVKT-----MALRVEKQ  210 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~--------------~~~~---------~~~~~~~~~a~~~~~~l~~-----~~~r~~~~  210 (339)
                      ++  +|+++.++ ...+.+..              ....         +....+....+.....++.     ++.+.++.
T Consensus       212 ~g--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~  288 (388)
T d1h0ca_         212 PG--TSLISFSD-KAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQH  288 (388)
T ss_dssp             TT--CEEEEECH-HHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             Cc--eEEEeecH-HHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccc
Confidence            64  46666654 44443321              1111         1111221111111122222     23444445


Q ss_pred             HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCccccee
Q 019543          211 QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLIS  289 (339)
Q Consensus       211 ~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~  289 (339)
                      .+..+++.+.++..+..  +..+    ++.+       + ..++++|.+.+..+..+|.+.| ...+|.++.|.      
T Consensus       289 ~~l~~~l~~~~~~~g~~--~~~~----~~~~-------r-s~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~------  348 (388)
T d1h0ca_         289 REAAAYLHGRLQALGLQ--LFVK----DPAL-------R-LPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGL------  348 (388)
T ss_dssp             HHHHHHHHHHHHHHTCC--BSSC----SGGG-------B-CTTEEEEECCTTCCHHHHHHHHHHHHCEECEECC------
T ss_pred             cchhHHHHHHHhhcCcc--cccC----CHHH-------c-CCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCc------
Confidence            56666777777655321  1111    1110       1 2458889885433345666665 44688877663      


Q ss_pred             ccccccCCCCCHHHHHhCCCCCCeEEEE-eccCCH----HHHHHHHHHHHhcCC
Q 019543          290 MPCFMSHASIPVEVRQARGLTEDLVRIS-VGIEDV----NDLISDLDKALRTGP  338 (339)
Q Consensus       290 ~p~~~~h~~~~~~~~~~~g~~~~~lRis-vg~e~~----~~li~~l~~al~~~~  338 (339)
                      .+                 ...+.+||| +|..++    +.+++.|.++|++++
T Consensus       349 ~~-----------------~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~  385 (388)
T d1h0ca_         349 GP-----------------STGKVLRIGLLGCNATRENVDRVTEALRAALQHCP  385 (388)
T ss_dssp             GG-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred             hh-----------------hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            11                 134689999 787544    444555555555543

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-15  Score=143.67  Aligned_cols=244  Identities=14%  Similarity=0.127  Sum_probs=150.8

Q ss_pred             chHHHHHHHHHhHhCCC-----eEEEcCcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKAD-----RALCFTSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~-----~~l~~~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++++.+.+.+.+|.+     ++++++++++|+..++ .++.|||.|+++++.|+.....+.                 
T Consensus        68 ~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~  147 (418)
T d1w7la_          68 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQ  147 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC--
T ss_pred             HHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeecccccccccc
Confidence            45556666666655642     4677777789998644 589999999999998876653322                 


Q ss_pred             ----------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC----cc-
Q 019543          112 ----------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR----PL-  140 (339)
Q Consensus       112 ----------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~----~~-  140 (339)
                                                                    ++|+++|++|++++|+|++|..-.+..    ++ 
T Consensus       148 ~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~  227 (418)
T d1w7la_         148 NGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIA  227 (418)
T ss_dssp             -CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             ccccccccCcccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHH
Confidence                                                          899999999999999999996543311    11 


Q ss_pred             cC----CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch-----------hhHHH
Q 019543          141 EL----GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV-----------KTMAL  205 (339)
Q Consensus       141 ~~----~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l-----------~~~~~  205 (339)
                      ..    .-.+++.|+||.++.+|.+ .||+++++ ++++.++..........+......+...+           +.+..
T Consensus       228 ~~~~~~~~~i~~~S~SK~~~~pG~R-vG~~v~~~-~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  305 (418)
T d1w7la_         228 SLPGMWERTLTIGSAGKTFSATGWK-VGWVLGPD-HIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQ  305 (418)
T ss_dssp             GSTTTGGGEEEEEEHHHHTTCGGGC-CEEEECCH-HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHH
T ss_pred             HccccccccceecccCccccCCCCc-ccccccch-hhhhhhccccccccccccchhhHHHHHHhhhcccccccccccccc
Confidence            11    1258899999999987754 56777764 68888887776555555544333222222           22344


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC-------------HHHHHHHHcc-
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS-------------LALSKHVVET-  271 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~-------------~~~~~~~~~~-  271 (339)
                      ..++..++++.+.+.|++. +++ +..|.                .|..+++.+.+             .....+|++. 
T Consensus       306 ~~~~~~~~r~~l~~~L~~~-g~~-~~~P~----------------gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  367 (418)
T d1w7la_         306 FPQAMQRCRDHMIRSLQSV-GLK-PLIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWM  367 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TCE-EEECS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhc-CCc-ccCCC----------------ceeEEEEECcccccccchhccccccccHHHHHHHH
Confidence            5566677778888888876 443 23331                24455655421             1123455555 


Q ss_pred             CCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          272 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       272 L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      |++.|+.+..|..+.....                .+-.++.||||+.. + ++.++...+.|++
T Consensus       368 l~~~gV~v~PG~~F~~~~~----------------~~~~~~~iRis~~~-~-~~~l~~a~~rl~~  414 (418)
T d1w7la_         368 IKNKGLVAIPVSIFYSVPH----------------QKHFDHYIRFCFVK-D-EATLQAMDEKLRK  414 (418)
T ss_dssp             HHHHCEECEEGGGGSCHHH----------------HTTSCSEEEEECCC-C-HHHHHHHHHHHHH
T ss_pred             HHHCCEEEEcchhhcCCCc----------------cCCCCCEEEEEEcC-C-HHHHHHHHHHHHH
Confidence            4667888877754321100                01135789999864 3 3334444444443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.68  E-value=5.4e-16  Score=142.89  Aligned_cols=250  Identities=21%  Similarity=0.235  Sum_probs=162.8

Q ss_pred             CcccCC--CCchHHHHH----HHHHhHhCCCeEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH-----------
Q 019543           47 YDYTRS--GNPTRDALE----SLLAKLDKADRALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD-----------  107 (339)
Q Consensus        47 ~~y~r~--~~~~~~~le----~~la~~~g~~~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~-----------  107 (339)
                      |...|+  +....+++|    ++..++|+++.+-+ ..||+.|+.+ ..++++|||.|+..+...+|..           
T Consensus        55 ~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~  134 (405)
T d1kl1a_          55 YPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV  134 (405)
T ss_dssp             ETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHH
T ss_pred             CCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccce
Confidence            444443  567788888    45568999998776 5599999986 4569999999999775433321           


Q ss_pred             ----------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcC-----CCCCcCcc
Q 019543          108 ----------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIM-----SPVLSRPL  140 (339)
Q Consensus       108 ----------------------~~~~--------------------~~I~~la~~~g~~livD~a~a-----~g~~~~~~  140 (339)
                                            .+.+                    +++.++|++.|++|++|.+|-     .|.+.+|+
T Consensus       135 ~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~  214 (405)
T d1kl1a_         135 QYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV  214 (405)
T ss_dssp             HSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST
T ss_pred             EEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh
Confidence                                  1111                    999999999999999999994     46677888


Q ss_pred             cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCCh---HHHHHHHh---c-hhhHHHHHHHHHHH
Q 019543          141 ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAP---FDCWICLR---G-VKTMALRVEKQQDN  213 (339)
Q Consensus       141 ~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~---~~a~~~~~---~-l~~~~~r~~~~~~~  213 (339)
                      +. +|++++|.+|+|.||   .||+|.+++ ++.+++.+.. +.|..-+|   ..|+.+..   . -+.+....++..+|
T Consensus       215 ~~-aDvvt~tThKtlrGP---rgg~I~~~~-~~~~~i~~av-fPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~N  288 (405)
T d1kl1a_         215 PY-AHFVTTTTHKTLRGP---RGGMILCQE-QFAKQIDKAI-FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDN  288 (405)
T ss_dssp             TT-CSEEEEESSSTTCCC---SCEEEEECH-HHHHHHHHHH-TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             hh-hhheeccccccccCC---CCceEEecc-hhHHHHHhhh-CcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            65 899999999999976   589999874 6666655432 22322222   22332221   1 23457788888999


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHH-HHHHHHccCCcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLA-LSKHVVETTKYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~-~~~~~~~~L~~~~i~v~~G~~~s~~~~p~  292 (339)
                      ++.|++.|.+.. +..+.  +              ...++++.+.+.+.. ...+..+.|...||.++--      ..|.
T Consensus       289 AkaLa~~L~~~G-~~vv~--g--------------gTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn------~iP~  345 (405)
T d1kl1a_         289 AKRLASALQNEG-FTLVS--G--------------GTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKN------TIPY  345 (405)
T ss_dssp             HHHHHHHHHHTT-CEEGG--G--------------SCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEC------CCTT
T ss_pred             HHHHHHHHhcCC-ceeec--C--------------CCccceeeccccccCCcHHHHHHHHHHcCeEEcCC------cCCC
Confidence            999999998763 43321  1              235678888763221 1233334455667766521      1121


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEEe--------ccCCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRisv--------g~e~~~~li~~l~~al~~  336 (339)
                      -.           +....++-|||..        +.++++++.+-|.++|+.
T Consensus       346 d~-----------~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         346 DP-----------ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             CS-----------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             CC-----------CCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            00           0001235688886        447788888888888864

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=2.3e-14  Score=129.01  Aligned_cols=237  Identities=15%  Similarity=0.089  Sum_probs=142.9

Q ss_pred             CCCchHHHHHHHHHhHhCCCeEEEc-CcHHHHHHHHH-HhcCCCCEEEEcCCCccchH----------------------
Q 019543           52 SGNPTRDALESLLAKLDKADRALCF-TSGMAALAAVT-HLLGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        52 ~~~~~~~~le~~la~~~g~~~~l~~-~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      +.++.++++|+++++++|.+..++| +||+.||.+++ .++.+++.+++.........                      
T Consensus        35 ~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (345)
T d1v72a1          35 GTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAA  114 (345)
T ss_dssp             TCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGG
T ss_pred             CCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCcccccccccccc
Confidence            3678999999999999999877765 89999998655 47788888887654211100                      


Q ss_pred             ----HHHH-----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC---cCc---ccC
Q 019543          108 ----RLLS-----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL---SRP---LEL  142 (339)
Q Consensus       108 ----~~~~-----------------------------------~~I~~la~~~g~~livD~a~a~g~~---~~~---~~~  142 (339)
                          ..+.                                   +++.++|++||+++++|+++..+..   ...   ...
T Consensus       115 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  194 (345)
T d1v72a1         115 KLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW  194 (345)
T ss_dssp             CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG
T ss_pred             cccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhc
Confidence                0000                                   7889999999999999999854321   111   111


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCC--hHHHHHHHh--chhhHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLA--PFDCWICLR--GVKTMALRVEKQQDNAQKIA  218 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~--~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~  218 (339)
                      ..+....+++|..++...  ++....................+...+  ...++....  ..........+...+.+++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (345)
T d1v72a1         195 KAGVDALSFGATKNGVLA--AEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLA  272 (345)
T ss_dssp             GGTCCEEEECCGGGTCSS--CEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCcccccccc--ccccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHH
Confidence            223333333444443222  233334443333333322222222222  222222222  22233445555667788888


Q ss_pred             HHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCC
Q 019543          219 EFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHAS  298 (339)
Q Consensus       219 ~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~  298 (339)
                      +.+.+++++. +..|.                .++++++.+++     +.+++|.+.|+.++.+        +       
T Consensus       273 ~~l~~~~g~~-~~~p~----------------~~niv~~~~~~-----~~~~~L~~~gi~v~~~--------~-------  315 (345)
T d1v72a1         273 QGLEGLGGVE-VLGGT----------------EANILFCRLDS-----AMIDALLKAGFGFYHD--------R-------  315 (345)
T ss_dssp             HHHTTCTTEE-EESCC----------------CSSEEEEEECH-----HHHHHHHHTTCBCBCS--------S-------
T ss_pred             HHHHhcCCcE-eccCC----------------CccEEEEEcCH-----HHHHHHHHcCCCcccc--------C-------
Confidence            9999999875 33342                46788888853     2344455556655321        1       


Q ss_pred             CCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          299 IPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       299 ~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                                ..++.||||++..++++.||.+.++|++.
T Consensus       316 ----------~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         316 ----------WGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             ----------SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ----------CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                      14578999999999999999999999864

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=2.4e-14  Score=131.52  Aligned_cols=239  Identities=17%  Similarity=0.137  Sum_probs=146.2

Q ss_pred             chHHHHHHHHHhHhCCCe---EEEc-CcHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH--H----------------
Q 019543           55 PTRDALESLLAKLDKADR---ALCF-TSGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL--S----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~---~l~~-~sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~--~----------------  111 (339)
                      ...++.++++++++|+++   .+++ +||+.++.+++ .+..++|.+++....+.+.....  .                
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            467899999999999852   3444 57799998654 57788877776654333221100  0                


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|.++|++||+++++|.+|+.|.. .+.-.+++|++++|.+|+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~  192 (361)
T d1m32a_         113 PDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ  192 (361)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred             ccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeeccccc
Confidence                                              9999999999999999999998865 34446789999999999998


Q ss_pred             cCCCceEEEEEEcChhHHHHHH---------------HHHH---hcCCCCChHHHHHHHhchhh------HHHHHHHHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELY---------------FLQN---AEGSGLAPFDCWICLRGVKT------MALRVEKQQD  212 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~---------------~~~~---~~~~~~~~~~a~~~~~~l~~------~~~r~~~~~~  212 (339)
                      ||.+  .|+++.++ +..+...               ....   .+..+.+..........+..      ...+.++...
T Consensus       193 gp~G--~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  269 (361)
T d1m32a_         193 GVPG--FAFVIARE-QKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQ  269 (361)
T ss_dssp             CCSS--EEEEEEEH-HHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCC--ceEEEech-hhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHH
Confidence            8754  46777764 2222111               1110   11122222222222222221      2333444556


Q ss_pred             HHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccceec
Q 019543          213 NAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLISM  290 (339)
Q Consensus       213 ~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~~~  290 (339)
                      .++.+.++++..+..    .+.   .+.+       + ...+++|.+.+  .....++.+.|...|+.++.|+.      
T Consensus       270 ~~~~l~~~~~~~g~~----~~~---~~~~-------r-s~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~------  328 (361)
T d1m32a_         270 NQRSLVAGMRALGFN----TLL---DDEL-------H-SPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKV------  328 (361)
T ss_dssp             HHHHHHHHHHHTTCC----BSS---CGGG-------B-CSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCC------
T ss_pred             HHHHHHHHHhhcCCc----ccC---Chhh-------c-CCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCc------
Confidence            677788888766421    111   1110       1 23467787632  22356778888888888765531      


Q ss_pred             cccccCCCCCHHHHHhCCCCCCeEEEEe-ccCCHHHHHHHHHHHHhc
Q 019543          291 PCFMSHASIPVEVRQARGLTEDLVRISV-GIEDVNDLISDLDKALRT  336 (339)
Q Consensus       291 p~~~~h~~~~~~~~~~~g~~~~~lRisv-g~e~~~~li~~l~~al~~  336 (339)
                                        ..++.+|||. |.. .++.|+++.+||++
T Consensus       329 ------------------~~~~~~Ris~~g~~-~~~di~~lv~al~~  356 (361)
T d1m32a_         329 ------------------SQSDCFRIGNIGEV-YAADITALLTAIRT  356 (361)
T ss_dssp             ------------------SSSCEEEEECCSSC-CHHHHHHHHHHHHH
T ss_pred             ------------------CCCCEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence                              1346799995 454 45558888888875

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=1.5e-14  Score=132.29  Aligned_cols=223  Identities=10%  Similarity=0.059  Sum_probs=144.8

Q ss_pred             chHHHHHHHHHhHhCC-----CeEEEcCcHHHHHHHHHHhcCCCCEEEEcCCCccchHHHHH------------------
Q 019543           55 PTRDALESLLAKLDKA-----DRALCFTSGMAALAAVTHLLGTGEEIVAGDDLYGGTDRLLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~-----~~~l~~~sG~~A~~~il~ll~~GD~Vi~~~~~y~~~~~~~~------------------  111 (339)
                      +...+|++.+|++++.     +++++++++++|+.++   +++||+|++.+|.|.+....+.                  
T Consensus        56 ~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l---~~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~  132 (334)
T d2f8ja1          56 SPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM---MLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP  132 (334)
T ss_dssp             SSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHH---HHHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC
T ss_pred             CCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHH---hhhccccccccccccccccchhccCCcccccccccccccc
Confidence            3456799999998763     3355555556676654   4567999999999988766554                  


Q ss_pred             -------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----ccCCCeEEEeccccccccCCCce
Q 019543          112 -------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----LELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 -------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                               ++|.+ +.++++++|+|+++........    .....-+++.|+||+++.+|. +
T Consensus       133 ~~~~~~~~~l~l~nP~NPtG~~~s~~~l~~-~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-R  210 (334)
T d2f8ja1         133 EVNVGEGDVVFIPNPNNPTGHVFEREEIER-ILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQ-R  210 (334)
T ss_dssp             CCCCCTTEEEEEESSCTTTCCCCCHHHHHH-HHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTT-C
T ss_pred             ccccccceEEEecccccccceeecHHHhhc-cccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhh-h
Confidence                                     55555 4578999999998854322111    112234899999999987764 5


Q ss_pred             EEEEEEcChhHHHHHHHHHHhcCCCCChHHHHH---HHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCC
Q 019543          163 AGVLAVKGERLAKELYFLQNAEGSGLAPFDCWI---CLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHP  239 (339)
Q Consensus       163 gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~---~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~  239 (339)
                      .|+++++ +.+++.+...+.  ....+......   .+...+.++.++++..++.+++.+.|++++ ++ + +|.     
T Consensus       211 ~G~~~~~-~~~i~~l~~~~~--~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~-~-~~~-----  279 (334)
T d2f8ja1         211 VGYVVAS-EKFIDAYNRVRL--PFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG-YR-I-TDS-----  279 (334)
T ss_dssp             EEEEEEC-HHHHHHHHHHSC--TTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT-CE-E-CCC-----
T ss_pred             hhhcccc-hHHHHHHHHhhc--ccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC-Ce-E-CCC-----
Confidence            6777776 578777776543  23344443332   233344456667777788888999998873 43 2 231     


Q ss_pred             chHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec
Q 019543          240 GHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg  319 (339)
                                 .|+.+++.+... .+.++.+.|...|+.++          +                  .++.||||+|
T Consensus       280 -----------~g~f~~~~~~~~-~~~~~~~~L~~~GI~vr----------~------------------~~~~vRis~g  319 (334)
T d2f8ja1         280 -----------RGNFVFVFMEKE-EKERLLEHLRTKNVAVR----------S------------------FREGVRITIG  319 (334)
T ss_dssp             -----------CSSEEEEECCHH-HHHHHHHHHHHTTEECE----------E------------------ETTEEEEECC
T ss_pred             -----------CceEEEEECCCC-CHHHHHHHHHHCCCEEC----------C------------------CCCeEEEEcC
Confidence                       355567666543 56788888877787663          1                  1257999998


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 019543          320 IEDVNDLISDLDKALRT  336 (339)
Q Consensus       320 ~e~~~~li~~l~~al~~  336 (339)
                      .  .+ ..+.+.++|+.
T Consensus       320 ~--~e-e~~~l~~~l~~  333 (334)
T d2f8ja1         320 K--RE-ENDMILRELEV  333 (334)
T ss_dssp             C--HH-HHHHHHHHHHH
T ss_pred             C--HH-HHHHHHHHHhc
Confidence            4  23 24667777764

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=1.2e-13  Score=128.44  Aligned_cols=238  Identities=13%  Similarity=0.063  Sum_probs=150.2

Q ss_pred             chHHHHHHHHHhHhCC----C-eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           55 PTRDALESLLAKLDKA----D-RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~----~-~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      ++++++.+.+.+.+|.    + ++++++++++|+.. +.+++++||.|+++++.|......+.                 
T Consensus        67 ~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  146 (382)
T d1u08a_          67 ALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFR  146 (382)
T ss_dssp             HHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceeccccccccc
Confidence            4555566666655552    3 47777877899985 55689999999999999987664443                 


Q ss_pred             -----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC--c---cc----CCCeEE
Q 019543          112 -----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR--P---LE----LGADIV  147 (339)
Q Consensus       112 -----------------------------------~~I~~la~~~g~~livD~a~a~g~~~~--~---~~----~~~Di~  147 (339)
                                                         ++|+++|+++++.++.|+.+.......  .   ..    ..--|+
T Consensus       147 ~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~  226 (382)
T d1u08a_         147 VDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVA  226 (382)
T ss_dssp             CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEE
T ss_pred             CCHHHHhhhhccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEE
Confidence                                               889999999999999999986543321  1   11    112489


Q ss_pred             EeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHHhC
Q 019543          148 MHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       148 ~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L~~  223 (339)
                      +.|+||.++.+|.+ .||++++ +++++.+.........+.+.....++...+    +.+...++.++++.+.+.+.++.
T Consensus       227 ~~s~SK~~~~pG~R-iG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (382)
T d1u08a_         227 VSSFGKTYHMTGWK-VGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE  304 (382)
T ss_dssp             EEEHHHHTTCGGGC-CEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS
T ss_pred             EeeccccccCCccc-chhhhcc-chhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence            99999999877754 5677776 467787777666555555554433333333    23444455566667777777764


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccC-CcceeecccCCcccceeccccccCCCCC
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETT-KYFSITVSFGSVKSLISMPCFMSHASIP  300 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~~~~h~~~~  300 (339)
                      . ++.. ..|                ..|..+|+.+..  .....+|+++| ++.|+.+..|..+..  .+         
T Consensus       305 ~-g~~~-~~p----------------~gg~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~--~~---------  355 (382)
T d1u08a_         305 S-RLEI-LPC----------------EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--DP---------  355 (382)
T ss_dssp             S-SCEE-CCC----------------CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--SC---------
T ss_pred             C-CcEE-ecC----------------CceEEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCC--CC---------
Confidence            3 4432 212                134456666642  22345677765 567888877754321  11         


Q ss_pred             HHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          301 VEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       301 ~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                              ..++.+|||++. ..++    |.+|+++
T Consensus       356 --------~~~~~~Ris~~~-~~e~----l~~al~R  378 (382)
T d1u08a_         356 --------FPHKLIRLCFAK-KEST----LLAAAER  378 (382)
T ss_dssp             --------CCSCEEEEECCS-CHHH----HHHHHHH
T ss_pred             --------CCCCEEEEEEeC-CHHH----HHHHHHH
Confidence                    135789999975 3333    4555543

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.58  E-value=6.8e-14  Score=129.14  Aligned_cols=241  Identities=18%  Similarity=0.188  Sum_probs=152.0

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEc-CcHHHHHHH-HHHhcCCCCEEEEcCCCccchHHHH--H-----------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCF-TSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDRLL--S-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~-~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~~~--~-----------------  111 (339)
                      ...++.++.|++++|.+  +.++| +||+.++.+ +..++.+||.+++....+.+.....  .                 
T Consensus        51 ~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (377)
T d1vjoa_          51 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVF  130 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhcccccccccCCCCcc
Confidence            56789999999999974  46666 456888875 5568999999988765443322110  0                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++||++|+++++|.+|+.|.. .+...+++|++++|.+|+++|+
T Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp  210 (377)
T d1vjoa_         131 SLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCS  210 (377)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSC
T ss_pred             cchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCC
Confidence                                            9999999999999999999998865 3444678999999999999877


Q ss_pred             CCceEEEEEEcChhHHHHHHHH--------------HH-h----cCCCCChHHHHHHH-hch-----hhHHHHHHHHHHH
Q 019543          159 SDVMAGVLAVKGERLAKELYFL--------------QN-A----EGSGLAPFDCWICL-RGV-----KTMALRVEKQQDN  213 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~~l~~~--------------~~-~----~~~~~~~~~a~~~~-~~l-----~~~~~r~~~~~~~  213 (339)
                      ++  +|++..++ ...+.....              .. .    +....+.......+ ..+     ...+.+.++..+.
T Consensus       211 ~g--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~  287 (377)
T d1vjoa_         211 PG--ASPFTMSS-RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKN  287 (377)
T ss_dssp             SS--CEEEEECH-HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CE--EEEecchh-hHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHH
Confidence            53  46666654 444432210              00 0    11112222221111 111     1234556666677


Q ss_pred             HHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccC-CcceeecccCCcccceeccc
Q 019543          214 AQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETT-KYFSITVSFGSVKSLISMPC  292 (339)
Q Consensus       214 a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L-~~~~i~v~~G~~~s~~~~p~  292 (339)
                      ..++.+.+..... ..+.      .+.+       + ..++++|.+.+.....+|.+.| ++.+|.++-|.      .+ 
T Consensus       288 ~~~l~~~l~~~~~-~~~~------~~~~-------r-s~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~------~~-  345 (377)
T d1vjoa_         288 VEYLWERLEDIGL-SLHV------EKEY-------R-LPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGL------GE-  345 (377)
T ss_dssp             HHHHHHHHHHTTC-CBSS------CGGG-------B-CSSEEEEECCTTCCHHHHHHHHHHHHCEECEECC------GG-
T ss_pred             hhhhhhhhhccCc-eeec------ChHh-------c-CCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCc------cc-
Confidence            7888888876532 1111      1111       1 3457788875433445677666 45688776553      11 


Q ss_pred             cccCCCCCHHHHHhCCCCCCeEEEE-eccCCHHHHHHHHHHHHhc
Q 019543          293 FMSHASIPVEVRQARGLTEDLVRIS-VGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       293 ~~~h~~~~~~~~~~~g~~~~~lRis-vg~e~~~~li~~l~~al~~  336 (339)
                                      +.++.+||| +|..++++.|+.|.+||++
T Consensus       346 ----------------~~~~~~Ris~~g~~~t~edi~~lv~al~~  374 (377)
T d1vjoa_         346 ----------------LAGKVWRVGLMGFNSRKESVDQLIPALEQ  374 (377)
T ss_dssp             ----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred             ----------------ccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence                            134689999 6887777778888888875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.58  E-value=5.4e-15  Score=139.95  Aligned_cols=244  Identities=12%  Similarity=0.032  Sum_probs=141.4

Q ss_pred             HHHHhHhCCC-eEEEcC-cHHHHHHHHHH---hcCCCCEEEEcCCCccchHHHHH-------------------------
Q 019543           62 SLLAKLDKAD-RALCFT-SGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLS-------------------------  111 (339)
Q Consensus        62 ~~la~~~g~~-~~l~~~-sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~~~-------------------------  111 (339)
                      ..+.+++|.+ .+..+. ++.+++.+++.   -..++++|+++...+......+.                         
T Consensus       120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l  199 (434)
T d2z67a1         120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDI  199 (434)
T ss_dssp             HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHH
T ss_pred             HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHH
Confidence            4466777765 344444 44455554433   24489999999876654433222                         


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc------CcccCCCeEEEeccccc
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS------RPLELGADIVMHSATKF  154 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~------~~~~~~~Di~~~S~sK~  154 (339)
                                                     ++|+++|++||+++++|+||+.+...      .+...++|++++|++|+
T Consensus       200 ~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~  279 (434)
T d2z67a1         200 ENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKN  279 (434)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHH
T ss_pred             HHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEEcCccc
Confidence                                           99999999999999999999865421      23456899999999999


Q ss_pred             cccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChH-HHHHH--HhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 019543          155 IAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPF-DCWIC--LRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVN  231 (339)
Q Consensus       155 l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~-~a~~~--~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~  231 (339)
                      ++++.+  +|++..+++.+.+++...... +...++. .++..  ..+.+.+....++..++++++++.|++++....  
T Consensus       280 l~~~~g--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g--  354 (434)
T d2z67a1         280 LLTPIG--GGLVYSTDAEFIKEISLSYPG-RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTG--  354 (434)
T ss_dssp             HCCCSS--CEEEEESCHHHHHHHHTTSCS-CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             cccCCC--ccccccCcHHHHHHHHhhccc-ccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcC--
Confidence            987643  466777776565554432211 2222232 22322  233445566777778888888888876432110  


Q ss_pred             cCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCC-CC
Q 019543          232 YAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARG-LT  310 (339)
Q Consensus       232 ~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g-~~  310 (339)
                      .+.++. +           ....+.+.+...  ..++...|...|+..+.      +..|..       ..--...+ ..
T Consensus       355 ~~ll~~-~-----------~~~~~~~~~~~~--~~~l~~~L~~~gI~g~~------v~~~l~-------~~g~~~~~~~~  407 (434)
T d2z67a1         355 GKFLDV-E-----------SPIASCISVNSD--PVEIAAKLYNLRVTGPR------GIKKTD-------HFGNCYLGTYT  407 (434)
T ss_dssp             CCBCCC-C-----------CSSEEEEECSSC--HHHHHHHHHHTTEESCE------EECTTC-------HHHHTCSSCCS
T ss_pred             ceecCC-C-----------CCceeeeecCCC--HHHHHHHHHHcCCeeee------hhhhcc-------ccCeeeecccC
Confidence            111111 0           112222223211  23455555555553221      111110       00000011 14


Q ss_pred             CCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          311 EDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       311 ~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                      ...+|++++..++++.|+.+.++|+++
T Consensus       408 ~~~l~~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         408 HDYIVMNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             CCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence            578999999999999999999999875

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.57  E-value=6.3e-14  Score=130.07  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=88.1

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcC-cHHHHHHHHH-HhcCCCCEEEEcCCCccchHHHH--H-----------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFT-SGMAALAAVT-HLLGTGEEIVAGDDLYGGTDRLL--S-----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~-sG~~A~~~il-~ll~~GD~Vi~~~~~y~~~~~~~--~-----------------  111 (339)
                      ...++.++.|++++|.+  .+++|+ ||+.|+.+++ .++.+||+|++......+.....  .                 
T Consensus        50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (388)
T d2ch1a1          50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPF  129 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhhccccccccccccccc
Confidence            56789999999999975  466665 6799988654 58899999988765433322110  0                 


Q ss_pred             --------------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccC
Q 019543          112 --------------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGH  158 (339)
Q Consensus       112 --------------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~  158 (339)
                                                      ++|.++||++|+++++|.+++.|.. .+...+++|++++|.+|+++|+
T Consensus       130 ~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp  209 (388)
T d2ch1a1         130 SLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAP  209 (388)
T ss_dssp             CHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCC
T ss_pred             chhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCC
Confidence                                            8899999999999999999998754 3445678999999999999988


Q ss_pred             CCceEEEEEEcChhHHH
Q 019543          159 SDVMAGVLAVKGERLAK  175 (339)
Q Consensus       159 ~~~~gG~v~~~~~~l~~  175 (339)
                      ++  .|++..++ ...+
T Consensus       210 ~G--~g~~~~~~-~~~~  223 (388)
T d2ch1a1         210 PG--ITPISISP-KALD  223 (388)
T ss_dssp             SS--CEEEEECH-HHHH
T ss_pred             Ce--EEEEeccH-HHHH
Confidence            64  46777664 3444

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=134.64  Aligned_cols=243  Identities=19%  Similarity=0.161  Sum_probs=151.0

Q ss_pred             CCchHHHHH----HHHHhHhCCCeE-----EEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------------
Q 019543           53 GNPTRDALE----SLLAKLDKADRA-----LCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        53 ~~~~~~~le----~~la~~~g~~~~-----l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------------  107 (339)
                      +....+++|    ++..++|+++++     +=..||+.|+.+ ..++++|||.|+..+...+|..               
T Consensus        67 G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g  146 (463)
T d2a7va1          67 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  146 (463)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCccccccccccccccccee
Confidence            455566666    456789999874     667899999986 4569999999987654322211               


Q ss_pred             -----------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCc-----CCCCCcCc
Q 019543          108 -----------------------RLLS--------------------RKIAEMAHAHGALLLVDNSI-----MSPVLSRP  139 (339)
Q Consensus       108 -----------------------~~~~--------------------~~I~~la~~~g~~livD~a~-----a~g~~~~~  139 (339)
                                             .+.+                    +++.++|++.|++|++|.+|     +.|.+.+|
T Consensus       147 ~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP  226 (463)
T d2a7va1         147 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSP  226 (463)
T ss_dssp             -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCG
T ss_pred             eEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcCh
Confidence                                   0000                    99999999999999999999     45667788


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHHHHhcCCCCCh---HHHHHHH---hc
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAP---FDCWICL---RG  199 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~--------------~l~~~l~~~~~~~~~~~~~---~~a~~~~---~~  199 (339)
                      ++. +|++++|.+|+|.||   .||+|.++++              ++.+++.... +.|..-+|   ..++.+.   ..
T Consensus       227 ~~~-aDvvt~tTHKTlrGP---rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~av-FPg~qggph~h~iAa~Ava~~ea  301 (463)
T d2a7va1         227 FKH-ADIVTTTTHKTLRGA---RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAV-FPSLQGGPHNHAIAAVAVALKQA  301 (463)
T ss_dssp             GGT-CSEEEEESSGGGCSC---SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHH-TTTTCCSCCHHHHHHHHHHHHHH
T ss_pred             hhh-hhhhhchhhhhhcCC---CceEEEEcccccccccccCccchhHHHHHhhhhc-CcccchhhhhhhHHHHHHHHHHh
Confidence            875 799999999999976   5899998863              4555555432 22222222   2232222   12


Q ss_pred             h-hhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCccee
Q 019543          200 V-KTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSI  277 (339)
Q Consensus       200 l-~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i  277 (339)
                      + ....+..++..+|++.|++.|.+. +++.+..                ....+++.+.+.+. .......+.|...+|
T Consensus       302 ~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~vv~g----------------gTdnHlvlvdl~~~~~~G~~ae~~Le~~gI  364 (463)
T d2a7va1         302 CTPMFREYSLQVLKNARAMADALLER-GYSLVSG----------------GTDNHLVLVDLRPKGLDGARAERVLELVSI  364 (463)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGG----------------SCSSSEEEEECTTTTCCHHHHHHHHHHTTE
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhC-CCeeecC----------------CCCCceeeeeccccCCCHHHHHHHHHhccC
Confidence            2 246778888899999999999876 3433321                23567888876332 122333444555566


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe--------ccCCHHHHHHHHHHHHh
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALR  335 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv--------g~e~~~~li~~l~~al~  335 (339)
                      .++--.      -|.-            .....++-|||..        +.++++++.+-|.++|+
T Consensus       365 ~~Nkn~------iP~D------------~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         365 TANKNT------CPGD------------RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             ECEEEC------CTTC------------CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcc------CCCC------------CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            665211      1210            0012345689986        34677787777777764

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.3e-13  Score=127.84  Aligned_cols=209  Identities=11%  Similarity=0.053  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHhHhCC----C-e-EEEcCcHHHHHHHHH-Hhc---CCCCEEEEcCCCccchHHHH--H------------
Q 019543           56 TRDALESLLAKLDKA----D-R-ALCFTSGMAALAAVT-HLL---GTGEEIVAGDDLYGGTDRLL--S------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~----~-~-~l~~~sG~~A~~~il-~ll---~~GD~Vi~~~~~y~~~~~~~--~------------  111 (339)
                      ..+++.+.+.++++.    + + .++++||+.|+.+++ .++   +|||+|++....+.+.....  .            
T Consensus        37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (382)
T d2bkwa1          37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL  116 (382)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccccccccccc
Confidence            345566666777653    2 3 445567799988644 454   68999999776444322110  0            


Q ss_pred             --------------------------------------HHHHHHHHHcC--CEEEEeCCcCCCCC-cCcccCCCeEEEec
Q 019543          112 --------------------------------------RKIAEMAHAHG--ALLLVDNSIMSPVL-SRPLELGADIVMHS  150 (339)
Q Consensus       112 --------------------------------------~~I~~la~~~g--~~livD~a~a~g~~-~~~~~~~~Di~~~S  150 (339)
                                                            +++.++|++|+  +++++|.+++.|.. .+...+++|++++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s  196 (382)
T d2bkwa1         117 KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA  196 (382)
T ss_dssp             STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred             CCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeec
Confidence                                                  88888887764  99999999998865 34556799999999


Q ss_pred             cccccccCCCceEEEEEEcChhHHHHHHHHH--------------------Hh-----cCCCCChH-HHHHHHhchhh--
Q 019543          151 ATKFIAGHSDVMAGVLAVKGERLAKELYFLQ--------------------NA-----EGSGLAPF-DCWICLRGVKT--  202 (339)
Q Consensus       151 ~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~--------------------~~-----~~~~~~~~-~a~~~~~~l~~--  202 (339)
                      .+|+++||.+  .|+++.++ +..+.+....                    ..     .....++. ..+.+..+|+.  
T Consensus       197 ~~K~l~gP~G--~g~l~vs~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~  273 (382)
T d2bkwa1         197 SQKAIGAPAG--LSISLCSS-RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEIL  273 (382)
T ss_dssp             SSSTTCCCSC--EEEEEECH-HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             ccccCcCCCc--hhhhhccH-HHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHH
Confidence            9999987754  46777775 4444332111                    00     01112332 22222233433  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeec
Q 019543          203 ---MALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITV  279 (339)
Q Consensus       203 ---~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v  279 (339)
                         ++.+.++.++.++++.+.+....++..+.  ..+.+          .....+++|.+.+..+   +.+.|+.+|+.+
T Consensus       274 ~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~~~----------~~s~~v~~~~~~~~~~---~~~~L~~~gi~i  338 (382)
T d2bkwa1         274 EEGLHKRWDLHREMSDWFKDSLVNGLQLTSVS--RYPSN----------MSAHGLTAVYVADPPD---VIAFLKSHGVVI  338 (382)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTTTCCEESS--CSSST----------TBCSSCEEEECSCHHH---HHHHHHHTTEEC
T ss_pred             HhhhhhhHHHHHHHHHHHHHHhhhcccccccc--cCchh----------ccCCcEEEEcCCCHHH---HHHHHHHCCeEE
Confidence               34455666677788888887665543211  11111          0123577888766544   344456678887


Q ss_pred             ccC
Q 019543          280 SFG  282 (339)
Q Consensus       280 ~~G  282 (339)
                      +.|
T Consensus       339 ~~G  341 (382)
T d2bkwa1         339 AGG  341 (382)
T ss_dssp             BCC
T ss_pred             ECC
Confidence            765

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.56  E-value=5.7e-14  Score=131.10  Aligned_cols=237  Identities=14%  Similarity=0.077  Sum_probs=148.1

Q ss_pred             chHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH------H-hcCCCCEEEEcCCCccchHHHHH--------------
Q 019543           55 PTRDALESLLAKLDKAD--RALCFTSGMAALAAVT------H-LLGTGEEIVAGDDLYGGTDRLLS--------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il------~-ll~~GD~Vi~~~~~y~~~~~~~~--------------  111 (339)
                      ...+++++++|+++|++  +.+++++++.++..++      . ...+||+|++++..+........              
T Consensus        70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (404)
T d1qz9a_          70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  149 (404)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc
Confidence            46678999999999975  7888888888876432      1 24689998888776665432111              


Q ss_pred             ----------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccc
Q 019543          112 ----------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIA  156 (339)
Q Consensus       112 ----------------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~  156 (339)
                                                        ++|+++|+++|+.+++|.+|+.|... +....++|++++|.+|++.
T Consensus       150 ~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~  229 (404)
T d1qz9a_         150 LVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLN  229 (404)
T ss_dssp             EESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTC
T ss_pred             ccccchhHHHhcCCCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcc
Confidence                                              99999999999999999999988653 3335688999999999986


Q ss_pred             cCCCceEEEEEEcChhHHHHHHHH-----------------------HHhcCCCCChHHHHH---HH-----hchhhHHH
Q 019543          157 GHSDVMAGVLAVKGERLAKELYFL-----------------------QNAEGSGLAPFDCWI---CL-----RGVKTMAL  205 (339)
Q Consensus       157 g~~~~~gG~v~~~~~~l~~~l~~~-----------------------~~~~~~~~~~~~a~~---~~-----~~l~~~~~  205 (339)
                      ++.+ .+|+++.++ .+.+.+...                       ........+......   ..     .+++.+..
T Consensus       230 ~~~g-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  307 (404)
T d1qz9a_         230 GGPG-SQAFVWVSP-QLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR  307 (404)
T ss_dssp             CCTT-CCCEEEECT-TTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cCCc-eEEEEEech-hhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHH
Confidence            5432 256777664 333222100                       000111222221111   11     12233344


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcc
Q 019543          206 RVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVK  285 (339)
Q Consensus       206 r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~  285 (339)
                      +.....+....+.+.+...++++. ..|.   ++         ...+++++|.+.+..   ++.+.|...||.++     
T Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~i-~~p~---~~---------~~r~~~vsf~~~~~~---~v~~~L~~~gi~~~-----  366 (404)
T d1qz9a_         308 KSLALTDLFIELVEQRCAAHELTL-VTPR---EH---------AKRGSHVSFEHPEGY---AVIQALIDRGVIGD-----  366 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCEE-CSCS---SG---------GGBCSEEEEECTTHH---HHHHHHHTTTEECE-----
T ss_pred             HHHHhHHHHHHHHHhhccCCCEEE-ECCC---Cc---------cceeeEEEEecCCHH---HHHHHHHHCCCEEe-----
Confidence            444444445555566666777653 3332   11         125789999886543   45566666666432     


Q ss_pred             cceeccccccCCCCCHHHHHhCCCCCCeEEEEec-cCCHHHHHHHHHHHHhc
Q 019543          286 SLISMPCFMSHASIPVEVRQARGLTEDLVRISVG-IEDVNDLISDLDKALRT  336 (339)
Q Consensus       286 s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg-~e~~~~li~~l~~al~~  336 (339)
                          ++                  .++.||||++ ..++++.|+.+.++|++
T Consensus       367 ----~r------------------~~~~lRiS~~h~ynt~~did~~~~~L~~  396 (404)
T d1qz9a_         367 ----YR------------------EPRIMRFGFTPLYTTFTEVWDAVQILGE  396 (404)
T ss_dssp             ----EE------------------TTTEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             ----ec------------------CCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence                11                  2368999997 56777778888888764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.55  E-value=1.4e-13  Score=129.66  Aligned_cols=259  Identities=17%  Similarity=0.147  Sum_probs=152.5

Q ss_pred             CcccCCCCchHHHHHHHHHhHh---C---CC-eEEEcCcH-HHHHHH-HHHh--------cCCCCEEEEcCCCccchHHH
Q 019543           47 YDYTRSGNPTRDALESLLAKLD---K---AD-RALCFTSG-MAALAA-VTHL--------LGTGEEIVAGDDLYGGTDRL  109 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~---g---~~-~~l~~~sG-~~A~~~-il~l--------l~~GD~Vi~~~~~y~~~~~~  109 (339)
                      |.+....+..-.+||+.+++++   |   .+ .-+++++| ++++.+ +.+|        +.|||+|+++.|.|......
T Consensus        92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence            4444334455678999999876   3   12 23555555 888875 4456        57999999999998876544


Q ss_pred             HH------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-ccCCCeEEEeccc
Q 019543          110 LS------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-LELGADIVMHSAT  152 (339)
Q Consensus       110 ~~------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-~~~~~Di~~~S~s  152 (339)
                      .+                                    -.+ .-+-.+++.+|.|+++..+.+... ....-+|++.|+|
T Consensus       172 ~~~~~~~~~~~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l-~~~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl~S~S  250 (425)
T d2hoxa1         172 TKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLL-RHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMS  250 (425)
T ss_dssp             HHHSCBTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCC-CCCSSTTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHH
T ss_pred             HHHcCCCCCccCCCHHHHHhhCCCCceEEEEECCCCCCcch-hhhhhhCCEEEEeccccCccccchhhhcCCeEEEEeCH
Confidence            33                                    111 012236899999999954433211 1223479999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchh---------------hHHHHHHHHHHHHHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVK---------------TMALRVEKQQDNAQKI  217 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~---------------~~~~r~~~~~~~a~~l  217 (339)
                      |.++.+|.++ ||++++++.+.+++.........+.+......+...|+               .++...++..++.+++
T Consensus       251 K~fglaGlRi-Gw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l  329 (425)
T d2hoxa1         251 KFTGHSGSRF-GWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI  329 (425)
T ss_dssp             HHTSCGGGCC-EEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             HhccCcchhe-eeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999877654 56666776777777776655555555443333332222               2233455566777888


Q ss_pred             HHHHhCCCCceEEecCCCCCCCchHhH-hhhcCCCcceEEEeeCCHH--HHHHHHccCCcceeecccCCcccceeccccc
Q 019543          218 AEFLASHPRVKKVNYAGLPEHPGHELH-YSQAKGAGSVLSFLTGSLA--LSKHVVETTKYFSITVSFGSVKSLISMPCFM  294 (339)
Q Consensus       218 ~~~L~~~~~i~~v~~p~~~~~~~~~~~-~~~~~~~~~ivs~~~~~~~--~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~  294 (339)
                      .+.|++.+.+.   .+.++. +++... .......+...++.....+  .+.++   |++.||.+..|..+         
T Consensus       330 ~~~L~~~~~~~---l~~~p~-~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~l---L~e~gI~v~pGs~F---------  393 (425)
T d2hoxa1         330 TALLDQSDRFS---YQELPQ-SEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQT---FQNGRINTQNGVGF---------  393 (425)
T ss_dssp             HHHHTTSSSEE---CCCCCS-CEEETTTTEEECCCCSEEEEEECSGGGCSHHHH---HHHTTEECEEGGGG---------
T ss_pred             HHHHHhcCCce---eeccCC-ccceeeeeeccCCCcceeeeeCCCChHHHHHHH---HHhCCEEEEechhc---------
Confidence            88888876543   222221 221111 1111234455677654322  23333   45668887766432         


Q ss_pred             cCCCCCHHHHHhCCCCCCeEEEEeccC--CHHHHHHHHHHHHhc
Q 019543          295 SHASIPVEVRQARGLTEDLVRISVGIE--DVNDLISDLDKALRT  336 (339)
Q Consensus       295 ~h~~~~~~~~~~~g~~~~~lRisvg~e--~~~~li~~l~~al~~  336 (339)
                                   |..++.+|||+.-.  +.+..+++|.+.+++
T Consensus       394 -------------G~~~~yvRisl~~~~e~ld~~l~rL~~~v~a  424 (425)
T d2hoxa1         394 -------------EASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             -------------TSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             -------------CCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence                         22457899998643  235667777776653

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.9e-15  Score=139.51  Aligned_cols=174  Identities=16%  Similarity=0.081  Sum_probs=113.2

Q ss_pred             CcccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHH-HHHhcCCCCEEEEcC--------CCccch-----------
Q 019543           47 YDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAA-VTHLLGTGEEIVAGD--------DLYGGT-----------  106 (339)
Q Consensus        47 ~~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~--------~~y~~~-----------  106 (339)
                      ..|+  ++|++.+||+++++++|.++++.++||++|+.+ +..++++||++++.+        ..|.+.           
T Consensus        68 ~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~  145 (467)
T d2v1pa1          68 EAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT  145 (467)
T ss_dssp             CCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCE
T ss_pred             hhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHcCCe
Confidence            3466  789999999999999999999999999999975 444666665433222        112111           


Q ss_pred             ---------------------------HHHHH-----------------------------HHHHHHHHHcCCEEEEeCC
Q 019543          107 ---------------------------DRLLS-----------------------------RKIAEMAHAHGALLLVDNS  130 (339)
Q Consensus       107 ---------------------------~~~~~-----------------------------~~I~~la~~~g~~livD~a  130 (339)
                                                 ...+.                             ++|.++|++||++|++|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a  225 (467)
T d2v1pa1         146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSA  225 (467)
T ss_dssp             EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             eeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEech
Confidence                                       01111                             8999999999999999999


Q ss_pred             cCCCC-----------CcCc-------ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh----c----
Q 019543          131 IMSPV-----------LSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA----E----  184 (339)
Q Consensus       131 ~a~g~-----------~~~~-------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~----~----  184 (339)
                      |..+.           ....       +...+|++.+|.+|.++++   .||+++++++.+....+..+..    .    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~---~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (467)
T d2v1pa1         226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPT  302 (467)
T ss_dssp             THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCC
T ss_pred             hhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCC---CceeEEecchhhhhHHHhhcccccccccCcc
Confidence            85321           1111       1124689999999999864   4789988876555444433321    1    


Q ss_pred             CCCCChHHHHHHHhch--hhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          185 GSGLAPFDCWICLRGV--KTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       185 ~~~~~~~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      ...++...++.....+  .......+++.+++++|.+.|++..
T Consensus       303 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            1223333322222222  2235567777889999999998764

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.53  E-value=3.6e-13  Score=126.19  Aligned_cols=243  Identities=18%  Similarity=0.147  Sum_probs=154.2

Q ss_pred             CCchHHHHHHHH----HhHhCCC----eEEE-cCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---------------
Q 019543           53 GNPTRDALESLL----AKLDKAD----RALC-FTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---------------  107 (339)
Q Consensus        53 ~~~~~~~le~~l----a~~~g~~----~~l~-~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---------------  107 (339)
                      +....+++|...    .++|+.+    .+-+ ..||+.|+.+ .+++++|||.|+..+...+|..               
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~  150 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATS  150 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCccccc
Confidence            667788888544    7889876    4444 5699999986 5569999999998654221110               


Q ss_pred             -----------------------HHHH--------------------HHHHHHHHHcCCEEEEeCCcC-----CCCCcCc
Q 019543          108 -----------------------RLLS--------------------RKIAEMAHAHGALLLVDNSIM-----SPVLSRP  139 (339)
Q Consensus       108 -----------------------~~~~--------------------~~I~~la~~~g~~livD~a~a-----~g~~~~~  139 (339)
                                             .+.+                    +++.++|++.|++|++|.+|-     .|.+.+|
T Consensus       151 ~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP  230 (470)
T d1rv3a_         151 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSP  230 (470)
T ss_dssp             HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCG
T ss_pred             ceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCCh
Confidence                                   1111                    999999999999999999994     4567788


Q ss_pred             ccCCCeEEEeccccccccCCCceEEEEEEcCh--------------hHHHHHHHHHHhcCCCCCh---HHHHHHH---h-
Q 019543          140 LELGADIVMHSATKFIAGHSDVMAGVLAVKGE--------------RLAKELYFLQNAEGSGLAP---FDCWICL---R-  198 (339)
Q Consensus       140 ~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~--------------~l~~~l~~~~~~~~~~~~~---~~a~~~~---~-  198 (339)
                      ++. +||+++|.+|+|.||   .||+|.++++              ++.+++.... +.|..-+|   ..++.+.   . 
T Consensus       231 l~~-aDvvt~tTHKtlrGP---rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~av-FPg~qggph~~~IAa~Ava~~ea  305 (470)
T d1rv3a_         231 FEH-CHVVTTTTHKTLRGC---RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAV-FPGLQGGPHNHAIAGVAVALKQA  305 (470)
T ss_dssp             GGT-CSEEEEESSGGGCCC---SCEEEEEECSBCC-------CCBCCHHHHHHHHH-TTTTCCSCCHHHHHHHHHHHHHH
T ss_pred             hhe-eeeeeeehhhhccCC---cceEEEEccccccccccccchhHHHHHHHHhhhc-CccccccchhhHHHHHHHHHHHh
Confidence            875 699999999999976   5899998763              2444454332 22322222   2222222   1 


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCccee
Q 019543          199 GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSI  277 (339)
Q Consensus       199 ~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i  277 (339)
                      .-....+..++..+|++.|++.|.+.. +..+.                ....++++.+.+.+. -...++.+.|...||
T Consensus       306 ~~~~fk~Ya~qvv~NAk~La~~L~~~G-~~v~~----------------ggTdnHlvlvdl~~~g~~g~~ae~~Le~~gI  368 (470)
T d1rv3a_         306 MTPEFKEYQRQVVANCRALSAALVELG-YKIVT----------------GGSDNHLILVDLRSKGTDGGRAEKVLEACSI  368 (470)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGG----------------GSCSSSEEEEEGGGGTCCHHHHHHHHHHTTE
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhCC-ceecc----------------CCCCCceEEEeecccCCcHHHHHHHHHHcCc
Confidence            123467788888999999999999863 33222                123567888776321 112233334445566


Q ss_pred             ecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe--------ccCCHHHHHHHHHHHHh
Q 019543          278 TVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV--------GIEDVNDLISDLDKALR  335 (339)
Q Consensus       278 ~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv--------g~e~~~~li~~l~~al~  335 (339)
                      .++--      ..|.-.            ....++-|||..        +.++++++.+-|.++|+
T Consensus       369 ~~Nkn------~iP~D~------------~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         369 ACNKN------TCPGDK------------SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             ECEEE------CCSSCS------------CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EECCC------cCCCCC------------CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            55521      011100            002345688886        34777788888888774

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=5.1e-14  Score=130.43  Aligned_cols=253  Identities=12%  Similarity=0.048  Sum_probs=146.1

Q ss_pred             CchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHH-----HhcCCCCEEEEcCCCccchHHHHH---------------
Q 019543           54 NPTRDALESLLAKLDKAD--RALCFTSGMAALAAVT-----HLLGTGEEIVAGDDLYGGTDRLLS---------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il-----~ll~~GD~Vi~~~~~y~~~~~~~~---------------  111 (339)
                      ....++.++++++++|++  +.++++|+++++..++     ....+||.|+++...++......+               
T Consensus        43 ~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~  122 (376)
T d1eg5a_          43 NLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD  122 (376)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC
Confidence            344567788999999986  6778888888886443     246788888887766554433221               


Q ss_pred             ------------------------------------HHHHHHHHHc--CCEEEEeCCcCCCCCc-CcccCCCeEEEeccc
Q 019543          112 ------------------------------------RKIAEMAHAH--GALLLVDNSIMSPVLS-RPLELGADIVMHSAT  152 (339)
Q Consensus       112 ------------------------------------~~I~~la~~~--g~~livD~a~a~g~~~-~~~~~~~Di~~~S~s  152 (339)
                                                          ++|.++++++  |+.+++|++|+.|... +.-..++|++++|++
T Consensus       123 ~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~  202 (376)
T d1eg5a_         123 SRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAH  202 (376)
T ss_dssp             TTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGG
T ss_pred             CCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceecccc
Confidence                                                8899988666  9999999999988653 334568999999999


Q ss_pred             cccccCCCceEEEEEEcChhHHHHHHHH-------HHhcCCCCChHHHHHHHhch----hhHHHHHHHHHHHHHHHHHHH
Q 019543          153 KFIAGHSDVMAGVLAVKGERLAKELYFL-------QNAEGSGLAPFDCWICLRGV----KTMALRVEKQQDNAQKIAEFL  221 (339)
Q Consensus       153 K~l~g~~~~~gG~v~~~~~~l~~~l~~~-------~~~~~~~~~~~~a~~~~~~l----~~~~~r~~~~~~~a~~l~~~L  221 (339)
                      |++|++|   +|+++.+++..   ++..       ........+...........    ...............++.+.|
T Consensus       203 K~~gp~G---~~~l~~~~~~~---~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  276 (376)
T d1eg5a_         203 KFHGPKG---VGITYIRKGVP---IRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL  276 (376)
T ss_dssp             GGTSCTT---CEEEEECTTSC---CCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecCCC---ceeEEeccCcc---cCCcccCCCCcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccc
Confidence            9987554   35555554321   1110       00011111211111111111    112222333344556677777


Q ss_pred             hCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCH
Q 019543          222 ASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPV  301 (339)
Q Consensus       222 ~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~  301 (339)
                      .......  ..+..             .....++++.+.+. ....+...|...||.++.|..      |....+.  +.
T Consensus       277 ~~~~~~~--~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~L~~~gI~vr~G~~------c~~~~~~--~~  332 (376)
T d1eg5a_         277 MNLGAHI--ITPLE-------------ISLPNTLSVSFPNI-RGSTLQNLLSGYGIYVSTSSA------CTSKDER--LR  332 (376)
T ss_dssp             HTTTCEE--CSCTT-------------SBCTTEEEEECTTC-CHHHHHHHHHHTTEECBC--------------------
T ss_pred             ccccccc--ccccc-------------ccccceeeeccCCC-CHHHHHHHHhhCCeEEeCcch------hcCCccc--hh
Confidence            6654422  11110             11345677776432 234555556678999887642      2111111  01


Q ss_pred             HHHHhCCCC----CCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          302 EVRQARGLT----EDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       302 ~~~~~~g~~----~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                      ......|+.    ++.||||++..++++.|+.+.++|++
T Consensus       333 ~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~  371 (376)
T d1eg5a_         333 HVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE  371 (376)
T ss_dssp             CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            122345654    35799999999888889999998876

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.44  E-value=2.8e-12  Score=113.75  Aligned_cols=235  Identities=12%  Similarity=0.067  Sum_probs=140.1

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchH---HHHH---------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTD---RLLS---------------  111 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~---~~~~---------------  111 (339)
                      ..+..+++++++|+++|++  ++++++||++||.. +..+..++|+++.....+....   ....               
T Consensus        33 ~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (340)
T d1svva_          33 QDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKL  112 (340)
T ss_dssp             CSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCC
T ss_pred             CCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccceeeeecccccccc
Confidence            5788899999999999976  56777889999975 4458899999988766432211   0000               


Q ss_pred             ----------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc---c-----cCC
Q 019543          112 ----------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP---L-----ELG  143 (339)
Q Consensus       112 ----------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~---~-----~~~  143 (339)
                                                              ..+.++|+++|..+++|+++..+.....   .     ...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~  192 (340)
T d1svva_         113 RVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL  192 (340)
T ss_dssp             CHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH
T ss_pred             cchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccccc
Confidence                                                    6778999999999999999853221110   0     112


Q ss_pred             CeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCC-CCC-hHHHHHHHhch--hhHHHHHHHHHHHHHHHHH
Q 019543          144 ADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGS-GLA-PFDCWICLRGV--KTMALRVEKQQDNAQKIAE  219 (339)
Q Consensus       144 ~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~-~~~-~~~a~~~~~~l--~~~~~r~~~~~~~a~~l~~  219 (339)
                      .++...+..|..++.   .+++.... ..............+. ... ....+.+...+  .......++...++.++.+
T Consensus       193 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (340)
T d1svva_         193 TDMFYIGATKAGGMF---GEALIILN-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKA  268 (340)
T ss_dssp             CSEEEEECTTTTCSS---CEEEEECS-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeecCCccccccc---cccccccc-hhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHH
Confidence            245555555555432   23344333 2333333333332222 222 22222222222  2344556666677788888


Q ss_pred             HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCC
Q 019543          220 FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASI  299 (339)
Q Consensus       220 ~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~  299 (339)
                      .|+..+ ++ +..|                +.+.++.+.++ .+.+.++.+.+...++.++.                  
T Consensus       269 ~l~~~g-~~-~~~p----------------~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~~~------------------  311 (340)
T d1svva_         269 GLEACG-IR-LAWP----------------SASNQLFPILE-NTMIAELNNDFDMYTVEPLK------------------  311 (340)
T ss_dssp             HHHHTT-CC-BSSC----------------CSSSEECBEEE-HHHHHHHTTTEECEEEEEET------------------
T ss_pred             HHhcCC-Ce-eecC----------------CCceEEEEeCC-HHHHHHHHHhhhhhcccccC------------------
Confidence            887753 32 2223                14567766664 33455555554433332211                  


Q ss_pred             CHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Q 019543          300 PVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRTG  337 (339)
Q Consensus       300 ~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~~  337 (339)
                               ..++.||+|++..++++.|+.+.++|+++
T Consensus       312 ---------~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         312 ---------DGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             ---------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             ---------CCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence                     13478999999999999999999999875

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.39  E-value=1.6e-11  Score=114.91  Aligned_cols=198  Identities=10%  Similarity=0.054  Sum_probs=115.4

Q ss_pred             hcCCCCEEEEcCCCccchHHHHH---------------------------------------------------------
Q 019543           89 LLGTGEEIVAGDDLYGGTDRLLS---------------------------------------------------------  111 (339)
Q Consensus        89 ll~~GD~Vi~~~~~y~~~~~~~~---------------------------------------------------------  111 (339)
                      ++.|||+|++++|.|+.....++                                                         
T Consensus       126 ~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~  205 (412)
T d1ajsa_         126 TNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQW  205 (412)
T ss_dssp             SSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHH
T ss_pred             cCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHH
Confidence            37999999999999987654443                                                         


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c-------cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP----L-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~----~-------~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~  180 (339)
                      ++|+++|++||++||.|++|....+...    .       .....+++.|+||.++.+|++.| ++++.. ...+.+...
T Consensus       206 ~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G-~~~~~~-~~~~~~~~~  283 (412)
T d1ajsa_         206 KQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVG-NLTVVA-KEPDSILRV  283 (412)
T ss_dssp             HHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEE-EEEEEC-SSHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcc-ccccch-hHHHHHHHH
Confidence            9999999999999999999975543221    0       11235888899999998887655 555554 233333222


Q ss_pred             H-------HhcCCCCChHHHHHHHhc----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHh
Q 019543          181 Q-------NAEGSGLAPFDCWICLRG----------VKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHEL  243 (339)
Q Consensus       181 ~-------~~~~~~~~~~~a~~~~~~----------l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~  243 (339)
                      .       .......+...+.++...          .+.+....+++.++.+.+.+.|+.+..      ++   .-  ..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~------~~---~~--~~  352 (412)
T d1ajsa_         284 LSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT------PG---TW--NH  352 (412)
T ss_dssp             HHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------SS---CC--HH
T ss_pred             HHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CC---Ce--ee
Confidence            1       111122233322222111          122344455566677778888876532      11   00  00


Q ss_pred             HhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEec---c
Q 019543          244 HYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVG---I  320 (339)
Q Consensus       244 ~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg---~  320 (339)
                      .    ...+|++++.-.+.+.+.++.   ++.|+.+.          |                   .  .|||+.   .
T Consensus       353 i----~~~~G~F~~~~ls~~~v~~L~---~e~gV~~v----------p-------------------g--~Ri~~ag~~~  394 (412)
T d1ajsa_         353 I----TDQIGMFSFTGLNPKQVEYLI---NQKHIYLL----------P-------------------S--GRINMCGLTT  394 (412)
T ss_dssp             H----HHCCSSEEECCCCHHHHHHHH---HTTCEECC----------T-------------------T--SEEEGGGCCT
T ss_pred             e----cCCCeEEEecCCCHHHHHHHH---HhCCEEEe----------C-------------------C--CeEEeccCCH
Confidence            0    013456655322344443332   45555322          1                   1  188873   4


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 019543          321 EDVNDLISDLDKALRTG  337 (339)
Q Consensus       321 e~~~~li~~l~~al~~~  337 (339)
                      ++.+.+.+.|.+|++++
T Consensus       395 ~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         395 KNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             TTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            77888899999998875

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.39  E-value=5.4e-12  Score=120.00  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=104.0

Q ss_pred             cccCCCCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHH-HhcCCCCE-------EEEcCCCccchH------------
Q 019543           48 DYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVT-HLLGTGEE-------IVAGDDLYGGTD------------  107 (339)
Q Consensus        48 ~y~r~~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il-~ll~~GD~-------Vi~~~~~y~~~~------------  107 (339)
                      .|+  ++|...+||+++++++|.++++.++||++|+.+++ .++++||+       ++.....+..+.            
T Consensus        70 ~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~  147 (465)
T d1ax4a_          70 AYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAIN  147 (465)
T ss_dssp             CSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEE
T ss_pred             hhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHHcCCeeec
Confidence            455  68999999999999999999999999999997543 35554443       333222111100            


Q ss_pred             -------------------------HHHH-----------------------------HHHHHHHHHcCCEEEEeCCcCC
Q 019543          108 -------------------------RLLS-----------------------------RKIAEMAHAHGALLLVDNSIMS  133 (339)
Q Consensus       108 -------------------------~~~~-----------------------------~~I~~la~~~g~~livD~a~a~  133 (339)
                                               ..++                             ++|.++|++||+++++|+++..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~  227 (465)
T d1ax4a_         148 IVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC  227 (465)
T ss_dssp             CBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence                                     1111                             8899999999999999999853


Q ss_pred             CC-----------CcCc-------ccCCCeEEEeccccccccCCCceEEEEEEcChhH-HHHHHHHHH-hcCC----CCC
Q 019543          134 PV-----------LSRP-------LELGADIVMHSATKFIAGHSDVMAGVLAVKGERL-AKELYFLQN-AEGS----GLA  189 (339)
Q Consensus       134 g~-----------~~~~-------~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l-~~~l~~~~~-~~~~----~~~  189 (339)
                      +.           ....       ....+|++++|.+|..++++   +|++++++... ......... ..+.    .+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (465)
T d1ax4a_         228 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLA  304 (465)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCC
T ss_pred             hhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCCcchhh
Confidence            21           1100       11135899999999888653   67887775432 222222211 1111    122


Q ss_pred             hHHHHHHHhchhh--HHHHHHHHHHHHHHHHHHHhCCC
Q 019543          190 PFDCWICLRGVKT--MALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       190 ~~~a~~~~~~l~~--~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      ......+...+..  .+...+++.+++++|.+.|++..
T Consensus       305 ~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g  342 (465)
T d1ax4a_         305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG  342 (465)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            2221111111211  13456666778889999998763

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.38  E-value=4.4e-11  Score=111.43  Aligned_cols=136  Identities=11%  Similarity=0.042  Sum_probs=85.8

Q ss_pred             HhcCCCCEEEEcCCCccchHHHHH--------------------------------------------------------
Q 019543           88 HLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------------------  111 (339)
Q Consensus        88 ~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------------------  111 (339)
                      .+++|||+|++++|.|+.....+.                                                        
T Consensus       118 ~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~  197 (401)
T d7aata_         118 RFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQW  197 (401)
T ss_dssp             HHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHH
T ss_pred             hhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHH
Confidence            489999999999999988765444                                                        


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c------cC-CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHH
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP----L------EL-GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFL  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~----~------~~-~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~  180 (339)
                      ++|+++|++||++||+|++|..-.+...    .      .. .--+++.|+||.++.+|.++ |+++++. .+.+.+...
T Consensus       198 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~Ri-G~~~~~~-~~~~~~~~~  275 (401)
T d7aata_         198 KELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVIC-RDAEEAKRV  275 (401)
T ss_dssp             HHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEEC-SSHHHHHHH
T ss_pred             HHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccc-ceeecch-HHHHHHHHH
Confidence            8999999999999999999976544221    0      11 11377789999999888665 5666654 344433322


Q ss_pred             H-------HhcCCCCChHHHHHHHhch----------hhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          181 Q-------NAEGSGLAPFDCWICLRGV----------KTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       181 ~-------~~~~~~~~~~~a~~~~~~l----------~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      .       +......+...++.+...+          +..+...+++.++.+.+.+.|+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  337 (401)
T d7aata_         276 ESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG  337 (401)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1       1111222333332222111          2234445556667778888888763

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=2.8e-12  Score=121.17  Aligned_cols=166  Identities=11%  Similarity=0.037  Sum_probs=101.3

Q ss_pred             HHHHHH----HHHhHhCCC---eEEEcCcHHHH-HHHHHH----hcCCCCEEEEcCCCccchHHHHH-------------
Q 019543           57 RDALES----LLAKLDKAD---RALCFTSGMAA-LAAVTH----LLGTGEEIVAGDDLYGGTDRLLS-------------  111 (339)
Q Consensus        57 ~~~le~----~la~~~g~~---~~l~~~sG~~A-~~~il~----ll~~GD~Vi~~~~~y~~~~~~~~-------------  111 (339)
                      ..++|+    .+++++|..   ...++++|+.+ +.+++.    -..++++||++...+......+.             
T Consensus        92 ~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~  171 (445)
T d3bc8a1          92 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL  171 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence            345554    456667753   46666666643 333332    24578999998876655443222             


Q ss_pred             ------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc--Cc----ccC-
Q 019543          112 ------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLS--RP----LEL-  142 (339)
Q Consensus       112 ------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~--~~----~~~-  142 (339)
                                                                ++|+++|++||+++++|+||+.+...  ..    ... 
T Consensus       172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~  251 (445)
T d3bc8a1         172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG  251 (445)
T ss_dssp             ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred             cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcC
Confidence                                                      89999999999999999999876532  11    112 


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHH
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEF  220 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~  220 (339)
                      ++|++++|++|+++++.  .+|+++.++..+.+.+.......+...+....+..+.  +.+.+....++..++++++.+.
T Consensus       252 ~vd~~~~s~hK~~~~p~--g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  329 (445)
T d3bc8a1         252 RIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQ  329 (445)
T ss_dssp             CCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEecCccccccCC--CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence            58999999999998764  3677877776555554432111122222233333332  2334455566666777777777


Q ss_pred             HhCC
Q 019543          221 LASH  224 (339)
Q Consensus       221 L~~~  224 (339)
                      |+.+
T Consensus       330 L~~l  333 (445)
T d3bc8a1         330 LKKL  333 (445)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=4e-11  Score=109.83  Aligned_cols=239  Identities=14%  Similarity=0.064  Sum_probs=141.5

Q ss_pred             chHHHHHHHHHhHhCCC-eEE-EcCcHHHHHHH-HHHhcCCCCEEEEcCCCccchHH--HHH------------------
Q 019543           55 PTRDALESLLAKLDKAD-RAL-CFTSGMAALAA-VTHLLGTGEEIVAGDDLYGGTDR--LLS------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~-~~l-~~~sG~~A~~~-il~ll~~GD~Vi~~~~~y~~~~~--~~~------------------  111 (339)
                      ...++.++.|+++++.+ +++ +.+||+.|+.+ +..++++||+|++....+.+...  ..+                  
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~  112 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPR  112 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhcCcccccccccCCCccc
Confidence            45778888999999876 444 56677999975 45699999999887765433221  111                  


Q ss_pred             ---------------------------HHHHHHHHHcC--CEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCCCc
Q 019543          112 ---------------------------RKIAEMAHAHG--ALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDV  161 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g--~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~~~  161 (339)
                                                 ++|.++|++|+  ..+++|.+.+.|.. .+.-.+++|++++|.+|+++|+.+ 
T Consensus       113 ~~~~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG-  191 (348)
T d1iuga_         113 PEDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPG-  191 (348)
T ss_dssp             TTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSC-
T ss_pred             cccccccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCc-
Confidence                                       89999999985  78899999988764 334456899999999999987764 


Q ss_pred             eEEEEEEcChhHHHHH---------HHHHHh----cCCCCChHH-HHHHHhchhh----HHHHHHHHHHHHHHHHHHHhC
Q 019543          162 MAGVLAVKGERLAKEL---------YFLQNA----EGSGLAPFD-CWICLRGVKT----MALRVEKQQDNAQKIAEFLAS  223 (339)
Q Consensus       162 ~gG~v~~~~~~l~~~l---------~~~~~~----~~~~~~~~~-a~~~~~~l~~----~~~r~~~~~~~a~~l~~~L~~  223 (339)
                       .|+++.++ +..+++         ..+.+.    .....+|.. .+.+..+|+.    ...+.+++......+..+++.
T Consensus       192 -~~~v~~s~-~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (348)
T d1iuga_         192 -LGFVALSP-RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE  269 (348)
T ss_dssp             -EEEEEECH-HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eeeeeech-HHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence             36787775 444432         111111    112223332 2222233433    333333222233334444433


Q ss_pred             CCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHH
Q 019543          224 HPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEV  303 (339)
Q Consensus       224 ~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~  303 (339)
                       .++..  .|.   .          . ...+++|.+++..+..+|.+.|++.|+.+.-|.      .+            
T Consensus       270 -~gl~~--~~~---~----------~-s~~v~~~~~P~g~~~~~~~~~l~~~gi~i~~G~------~~------------  314 (348)
T d1iuga_         270 -GGLRP--VPK---R----------F-SPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQ------GP------------  314 (348)
T ss_dssp             -TTCEE--SCS---S----------B-CTTCEEEECCTTCCHHHHHHHHHTTTEECEECC------GG------------
T ss_pred             -hhhcc--Chh---h----------c-CCeEEEEECCCCCCHHHHHHHHHHCCeEEEcCc------cc------------
Confidence             34331  221   0          1 234788888543334567777777888776442      11            


Q ss_pred             HHhCCCCCCeEEEEec-c---CCHHHHHHHHHHHHhc
Q 019543          304 RQARGLTEDLVRISVG-I---EDVNDLISDLDKALRT  336 (339)
Q Consensus       304 ~~~~g~~~~~lRisvg-~---e~~~~li~~l~~al~~  336 (339)
                           +....+||+.. .   +|.+.+++.|.++|++
T Consensus       315 -----l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         315 -----LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             -----GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             -----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                 23467999753 3   3444556666666654

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.32  E-value=1.2e-10  Score=108.87  Aligned_cols=82  Identities=9%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             HhcCCCCEEEEcCCCccchHHHHH--------------------------------------------------------
Q 019543           88 HLLGTGEEIVAGDDLYGGTDRLLS--------------------------------------------------------  111 (339)
Q Consensus        88 ~ll~~GD~Vi~~~~~y~~~~~~~~--------------------------------------------------------  111 (339)
                      ..+.|||+|++++|.|+.....+.                                                        
T Consensus       119 ~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~  198 (412)
T d1yaaa_         119 SKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQW  198 (412)
T ss_dssp             HHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHH
T ss_pred             hccCCCCEEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHH
Confidence            467899999999999887654443                                                        


Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c---------c-CCCeEEEeccccccccCCCceEEEEEEcC
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLSRP----L---------E-LGADIVMHSATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~~~----~---------~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~  170 (339)
                      ++|+++|+++++++|+|++|..-.+...    .         . ...-+++.|+||.++.+|.+ .||+++++
T Consensus       199 ~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-iG~~~~~~  270 (412)
T d1yaaa_         199 VQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGER-VGCFHLAL  270 (412)
T ss_dssp             HHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGC-EEEEEEEC
T ss_pred             HHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCc-eEEEEEch
Confidence            9999999999999999999975443221    0         1 11238889999999988865 55666664

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.31  E-value=3.1e-11  Score=112.86  Aligned_cols=234  Identities=14%  Similarity=0.167  Sum_probs=137.6

Q ss_pred             CchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHh----------cCC-CCEEEEcCCCccchHH--------------
Q 019543           54 NPTRDALESLLAKLDKADRALCFTSGMAALAAVTHL----------LGT-GEEIVAGDDLYGGTDR--------------  108 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~l----------l~~-GD~Vi~~~~~y~~~~~--------------  108 (339)
                      +...+.+|+.++++.+.+.+.+++||+.|+...+.+          ... ...++.....|++...              
T Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~  159 (404)
T d1z7da1          80 SVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN  159 (404)
T ss_dssp             EHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred             hHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccC
Confidence            355688888999999999999999999998643221          111 2345554444443210              


Q ss_pred             ------------------HHH-----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcC--
Q 019543          109 ------------------LLS-----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSR--  138 (339)
Q Consensus       109 ------------------~~~-----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~--  138 (339)
                                        +..                             ++|.++|++||+++|+||++. .|-.+.  
T Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~  239 (404)
T d1z7da1         160 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL  239 (404)
T ss_dssp             ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc
Confidence                              000                             999999999999999999993 322111  


Q ss_pred             ---cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHH-----HHHHHH
Q 019543          139 ---PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMA-----LRVEKQ  210 (339)
Q Consensus       139 ---~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~-----~r~~~~  210 (339)
                         -.....||+  +++|.+++.. ...|++++++ ++.+.++......+..-+|+.++++...|+.+.     ++..+.
T Consensus       240 ~~e~~gv~PDiv--t~gK~l~gG~-~p~~~v~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~  315 (404)
T d1z7da1         240 CVHHYNVKPDVI--LLGKALSGGH-YPISAVLAND-DIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKL  315 (404)
T ss_dssp             GGGGGTCCCSEE--EECGGGGTTS-SCCEEEEECH-HHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             cccccCCCCCEE--EEcccccCCC-CCcccccchH-HHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccc
Confidence               123345888  5799998632 3456676664 565544332211223457888877777666532     122222


Q ss_pred             -HHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCH-HHHHHHHccCCcceeecccCCcccce
Q 019543          211 -QDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSL-ALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       211 -~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~-~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                       ....+.+.+.+++++.|..|.                  +.|.++.|.+.+. ....++..++...|+.+.        
T Consensus       316 ~~~~~~~l~~~~~~~~~v~~vr------------------g~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~--------  369 (404)
T d1z7da1         316 GGPFLENLKRELKDSKIVRDVR------------------GKGLLCAIEFKNELVNVLDICLKLKENGLITR--------  369 (404)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEE------------------EETTEEEEEECTTTCCHHHHHHHHHHTTEECC--------
T ss_pred             hhHHHHHHHHHHhcCCCeEEEE------------------eeCcEEEEEEcCCcccHHHHHHHHHhCCeEEe--------
Confidence             222345555666666655444                  3567888887543 334556666666565432        


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEec----cCCHHHHHHHHHHHHhc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVG----IEDVNDLISDLDKALRT  336 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg----~e~~~~li~~l~~al~~  336 (339)
                        |                 ...+.|||+..    .++.++.++.|.++|+.
T Consensus       370 --~-----------------~~~~~ir~~Ppl~it~~~id~~~~~l~~alk~  402 (404)
T d1z7da1         370 --D-----------------VHDKTIRLTPPLCITKEQLDECTEIIVKTVKF  402 (404)
T ss_dssp             --E-----------------ETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --c-----------------CCCCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence              1                 12356888754    45555666666666654

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-11  Score=113.56  Aligned_cols=235  Identities=16%  Similarity=0.200  Sum_probs=143.0

Q ss_pred             CCchHHHHHHHHHhHhCCCeEEEcCcHHHHHHHHHHhc----------C-CCCEEEEcCCCccchH--------------
Q 019543           53 GNPTRDALESLLAKLDKADRALCFTSGMAALAAVTHLL----------G-TGEEIVAGDDLYGGTD--------------  107 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~~~l~~~sG~~A~~~il~ll----------~-~GD~Vi~~~~~y~~~~--------------  107 (339)
                      .++....+++.++++.+.+.+..++||+.|+...+.+.          . ....++.....|++..              
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~  160 (404)
T d2byla1          81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD  160 (404)
T ss_dssp             EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred             ccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccccc
Confidence            34567788899999999999999999999997543221          1 2245665444444311              


Q ss_pred             ---------------------HHHH--------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc
Q 019543          108 ---------------------RLLS--------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP  139 (339)
Q Consensus       108 ---------------------~~~~--------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~  139 (339)
                                           ..+.                          ++|.++|++||+++|+||++. .|-.+..
T Consensus       161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~  240 (404)
T d2byla1         161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW  240 (404)
T ss_dssp             TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc
Confidence                                 0110                          999999999999999999983 3222221


Q ss_pred             -----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHH
Q 019543          140 -----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQD  212 (339)
Q Consensus       140 -----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~  212 (339)
                           .....||+  +++|.+++.. .-.|.++++ +++.+.+.......+..-+|+.++++...|+.+++  ..++..+
T Consensus       241 ~a~~~~gv~PDi~--~~gK~l~gG~-~p~~av~~~-~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~  316 (404)
T d2byla1         241 LAVDYENVRPDIV--LLGKALSGGL-YPVSAVLCD-DDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADK  316 (404)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGTTS-SCCEEEEEC-HHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhhhcCCCCCEE--EECchhhCCC-ccceeeeec-hhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhH
Confidence                 22345887  5799999643 334566665 35554443322112345578888888777777643  2444455


Q ss_pred             HHHHHHHHHhCCCC--ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCC--HHHHHHHHccCCcceeecccCCcccce
Q 019543          213 NAQKIAEFLASHPR--VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGS--LALSKHVVETTKYFSITVSFGSVKSLI  288 (339)
Q Consensus       213 ~a~~l~~~L~~~~~--i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~--~~~~~~~~~~L~~~~i~v~~G~~~s~~  288 (339)
                      ..+++.+.|+++..  +..                  .++.|.+..|.+.+  ...+.++..++.+.|+.+.        
T Consensus       317 ~g~~l~~~l~~l~~~~i~~------------------vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~--------  370 (404)
T d2byla1         317 LGIILRNELMKLPSDVVTA------------------VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAK--------  370 (404)
T ss_dssp             HHHHHHHHHHTSCTTTEEE------------------EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECE--------
T ss_pred             hhHHHHHHHHhhcccccee------------------eeecccEEEEEEecCCchhHHHHHHHHHhCCeEEe--------
Confidence            56677777776531  211                  13467788887643  2345667777766666432        


Q ss_pred             eccccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Q 019543          289 SMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  336 (339)
Q Consensus       289 ~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~~  336 (339)
                        |.                 ..+.||++.-+    ++.++.++.|.++|++
T Consensus       371 --~~-----------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~  403 (404)
T d2byla1         371 --PT-----------------HGDIIRFAPPLVIKEDELRESIEIINKTILS  403 (404)
T ss_dssp             --EE-----------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             --cC-----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence              10                 23578888544    4455556666666653

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=5.3e-11  Score=111.93  Aligned_cols=233  Identities=15%  Similarity=0.182  Sum_probs=139.6

Q ss_pred             CchHHHHHHHHHhHhCC---CeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHHHHH----------------
Q 019543           54 NPTRDALESLLAKLDKA---DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRLLS----------------  111 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~---~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~~~----------------  111 (339)
                      ++...+|.++|.++...   +.+..++||++|+...+.   .......|+.-...|+|......                
T Consensus        82 ~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~  161 (425)
T d1sffa_          82 YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM  161 (425)
T ss_dssp             CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred             CcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccc
Confidence            45667788888888753   457778999999974332   23345677777776765321000                


Q ss_pred             ------------------------------------------------------------HHHHHHHHHcCCEEEEeCCc
Q 019543          112 ------------------------------------------------------------RKIAEMAHAHGALLLVDNSI  131 (339)
Q Consensus       112 ------------------------------------------------------------~~I~~la~~~g~~livD~a~  131 (339)
                                                                                  +.|.++|++||+++|+||++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~  241 (425)
T d1sffa_         162 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ  241 (425)
T ss_dssp             CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             cCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEecccc
Confidence                                                                        99999999999999999998


Q ss_pred             CC-CCCc-----CcccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH
Q 019543          132 MS-PVLS-----RPLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL  205 (339)
Q Consensus       132 a~-g~~~-----~~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~  205 (339)
                      .. |-.+     .......||++  ++|.++|. -. .|++++++ ++.+.+.......+..-+|+.+++++..|+.+.+
T Consensus       242 tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG-~P-~~av~~~~-~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~  316 (425)
T d1sffa_         242 SGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGG-FP-LAGVTGRA-EVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ  316 (425)
T ss_dssp             TTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTS-SC-CEEEEEEH-HHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcchhhHHHhcCCCcccee--cccccCCC-cc-eEEEEEcH-HHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            42 2221     12233558777  69999863 23 45566664 5555443221112345568888888777776532


Q ss_pred             --HHHHHHHHHHHHHH----HHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--------CHHHHHHHHcc
Q 019543          206 --RVEKQQDNAQKIAE----FLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SLALSKHVVET  271 (339)
Q Consensus       206 --r~~~~~~~a~~l~~----~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--------~~~~~~~~~~~  271 (339)
                        ..++.++..+++.+    .++.++.+..|.                  +.|.++.|.+.        +......|.+.
T Consensus       317 ~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr------------------g~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~  378 (425)
T d1sffa_         317 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR------------------GLGAMIAIELFEDGDHNKPDAKLTAEIVAR  378 (425)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE------------------EETTEEEEEEBGGGCTTSBCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEE------------------ccccEEEEEEeccCccCCccHHHHHHHHHH
Confidence              23333344444444    445556544443                  35678888652        23345667777


Q ss_pred             CCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHH
Q 019543          272 TKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKAL  334 (339)
Q Consensus       272 L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al  334 (339)
                      +...|+.+..++                         ...+.||++..+..+++.|+.+.+++
T Consensus       379 l~~~Gvl~~~~g-------------------------~~~n~i~~~PpL~it~~eid~~l~~l  416 (425)
T d1sffa_         379 ARDKGLILLSCG-------------------------PYYNVLRILVPLTIEDAQIRQGLEII  416 (425)
T ss_dssp             HHHTTEECEEES-------------------------TTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHCCCEEeccC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            766666543211                         13467999977666555555544444

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=4.2e-10  Score=104.42  Aligned_cols=167  Identities=13%  Similarity=0.035  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhHh----C----CCe--EEEcCcHHHHHH--H-HHHhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLD----K----ADR--ALCFTSGMAALA--A-VTHLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~----g----~~~--~l~~~sG~~A~~--~-il~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+|++.+++++    +    .+.  .+++++|..++.  . ++..+.+||+|++++|.|+.....+.            
T Consensus        71 ~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~  150 (396)
T d2q7wa1          71 IPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYY  150 (396)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECE
T ss_pred             CHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccc
Confidence            345666666543    2    122  334455554443  2 34467999999999999987665443            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc-----c--
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP-----L--  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~-----~--  140 (339)
                                                                  ++|+++|++|+++||+|++|..-.+...     .  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  230 (396)
T d2q7wa1         151 DAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRA  230 (396)
T ss_dssp             ETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHH
T ss_pred             cccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhh
Confidence                                                        8999999999999999999975544211     0  


Q ss_pred             ---cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-------HhcCCCCChHHHHHHHhc----------h
Q 019543          141 ---ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-------NAEGSGLAPFDCWICLRG----------V  200 (339)
Q Consensus       141 ---~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-------~~~~~~~~~~~a~~~~~~----------l  200 (339)
                         .....+++.|+||.++.+|.+. |++++++ ..++......       .....+.+...+.++...          .
T Consensus       231 ~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~  308 (396)
T d2q7wa1         231 FAAMHKELIVASSYSKNFGLYNERV-GACTLVA-ADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWE  308 (396)
T ss_dssp             HHHHCSCEEEEEECTTTTTCGGGCC-EEEEEEC-SSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccccccccCCCc-cccccch-hHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHH
Confidence               1122477889999999888765 4666654 3344333221       111223333332222111          1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          201 KTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       201 ~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +.++...++..++.+.+.+.|+.+.
T Consensus       309 ~~~~~~~~~~~~~r~~l~~~L~~~~  333 (396)
T d2q7wa1         309 QELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2234445555666777888887763

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.20  E-value=1.9e-10  Score=105.26  Aligned_cols=239  Identities=11%  Similarity=0.017  Sum_probs=137.3

Q ss_pred             chHHHHHHHHHhHhCCCe---EEEcCcHHH-HHHHH-HHhcCCCCEEEEcCCCccchH--HHHH----------------
Q 019543           55 PTRDALESLLAKLDKADR---ALCFTSGMA-ALAAV-THLLGTGEEIVAGDDLYGGTD--RLLS----------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~---~l~~~sG~~-A~~~i-l~ll~~GD~Vi~~~~~y~~~~--~~~~----------------  111 (339)
                      ...++.++.|+++++.++   ++++++++. ++.++ ..+..+||.+++......+..  .+.+                
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~  127 (361)
T d2c0ra1          48 AVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNY  127 (361)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccc
Confidence            456788899999999853   455455544 44454 458889998876543222211  1111                


Q ss_pred             ----------------------------HHHHHHHHHcCCEEEEeCCcCCCCCc-CcccCCCeEEEeccccccccCCCce
Q 019543          112 ----------------------------RKIAEMAHAHGALLLVDNSIMSPVLS-RPLELGADIVMHSATKFIAGHSDVM  162 (339)
Q Consensus       112 ----------------------------~~I~~la~~~g~~livD~a~a~g~~~-~~~~~~~Di~~~S~sK~l~g~~~~~  162 (339)
                                                  ++|.++|+++|+++++|.+++.|... +.-  ..|+.+.|.+|.+++++.  
T Consensus       128 ~~~~~~~~~~~~~~~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~--~~di~~~s~~k~~~~~~~--  203 (361)
T d2c0ra1         128 MTLPKLQEIQLQDNAAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLN--QFGLVYAGAQKNLGPSGV--  203 (361)
T ss_dssp             CSCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTCCSSC--
T ss_pred             cchhhhhhhcccCcceEEEEecccceecceEEEeeccCCceEEEEeeccccccccccc--cceeEEEecccccccccC--
Confidence                                        77889999999999999999887642 222  346777788999987653  


Q ss_pred             EEEEEEcChhHHH---------HHHHHHHhc---CCCCChHHHHHH-----HhchhhHHHHHHHHHHHHHHHHHHHhCCC
Q 019543          163 AGVLAVKGERLAK---------ELYFLQNAE---GSGLAPFDCWIC-----LRGVKTMALRVEKQQDNAQKIAEFLASHP  225 (339)
Q Consensus       163 gG~v~~~~~~l~~---------~l~~~~~~~---~~~~~~~~a~~~-----~~~l~~~~~r~~~~~~~a~~l~~~L~~~~  225 (339)
                      +|+++..+ .+..         .........   .....+......     .........+.++++..+..+..+.....
T Consensus       204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (361)
T d2c0ra1         204 TVVIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG  282 (361)
T ss_dssp             EEEEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             cEEEEEhH-HhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcc
Confidence            33443332 1111         011111111   111111111111     11112234445555555666666665544


Q ss_pred             CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHH
Q 019543          226 RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQ  305 (339)
Q Consensus       226 ~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~  305 (339)
                      ...... +.    +.       .++ -.+++|.+.+......|.+.|++.||.+.-|.       .      .+      
T Consensus       283 ~~~~~~-~~----~~-------~rS-~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~-------~------~~------  330 (361)
T d2c0ra1         283 GFYRGC-VD----VD-------SRS-DMNITFRLASEELEKEFVKASEQEGFVGLKGH-------R------SV------  330 (361)
T ss_dssp             TSSEES-SC----GG-------GBC-SSEEEEECSCHHHHHHHHHHHHHTTEESCBCC-------T------TT------
T ss_pred             cccccC-CC----hh-------hcc-ceEEEEECCCcccHHHHHHHHHHCCCEEecCC-------C------cC------
Confidence            332111 11    10       122 24678888766666788888888898876552       1      10      


Q ss_pred             hCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          306 ARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       306 ~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                            +.+|||++...+.+.++.|.++|++
T Consensus       331 ------g~~RIs~~~~~~~edv~~Lv~~l~~  355 (361)
T d2c0ra1         331 ------GGLRASIYNAVPYESCEALVQFMEH  355 (361)
T ss_dssp             ------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence                  2389999998888888888888875

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.18  E-value=8.5e-10  Score=103.70  Aligned_cols=241  Identities=16%  Similarity=0.200  Sum_probs=136.3

Q ss_pred             cCCCCchHHHHHHHHHhHh--CCCeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHHH-H-------------
Q 019543           50 TRSGNPTRDALESLLAKLD--KADRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRL-L-------------  110 (339)
Q Consensus        50 ~r~~~~~~~~le~~la~~~--g~~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~-~-------------  110 (339)
                      +...++...+|.++|.+..  +.+.+.+++||++|+...+.   .....+.|+.-+..|+|.... +             
T Consensus        78 ~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~  157 (431)
T d1zoda1          78 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP  157 (431)
T ss_dssp             TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred             cccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCC
Confidence            3345566677888888876  45788899999999975432   334456777766666552100 0             


Q ss_pred             -------------------------------------H-----------------------------HHHHHHHHHcCCE
Q 019543          111 -------------------------------------S-----------------------------RKIAEMAHAHGAL  124 (339)
Q Consensus       111 -------------------------------------~-----------------------------~~I~~la~~~g~~  124 (339)
                                                           .                             ++|.++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gil  237 (431)
T d1zoda1         158 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML  237 (431)
T ss_dssp             CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred             cccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCce
Confidence                                                 0                             9999999999999


Q ss_pred             EEEeCCcC-CCCCcCc-----ccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--hcCCCCChHHHHHH
Q 019543          125 LLVDNSIM-SPVLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--AEGSGLAPFDCWIC  196 (339)
Q Consensus       125 livD~a~a-~g~~~~~-----~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~~~~~~~~~~a~~~  196 (339)
                      +|.||++. .|-.+..     .....||++  ++|.+++.- ..++ +++.+ +..+.......  ..+..-+|+.++++
T Consensus       238 lI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~gG~-p~~a-v~~~~-~~~~~~~~~~~~~~~T~~g~pl~~aaa  312 (431)
T d1zoda1         238 LILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGAGL-PLAA-IVTSA-AIEERAHELGYLFYTTHVSDPLPAAVG  312 (431)
T ss_dssp             EEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHTTS-SCEE-EEECH-HHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred             EEeccccccccccccccccccCCCCcchhc--ccccccccc-ccce-eeeee-cchhhhhcccccccCCCCCCcchHHHH
Confidence            99999984 2322221     223458877  589998643 4444 44543 44444332111  12345577776666


Q ss_pred             HhchhhHHH--HHHHHHHHH----HHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeC--------CH
Q 019543          197 LRGVKTMAL--RVEKQQDNA----QKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTG--------SL  262 (339)
Q Consensus       197 ~~~l~~~~~--r~~~~~~~a----~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~--------~~  262 (339)
                      ...|+.+.+  ..++..+..    +.+.+.++.++.|..|.                  |.|.++.|++.        ..
T Consensus       313 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vr------------------G~Glm~~ie~~~~~~~~~~~~  374 (431)
T d1zoda1         313 LRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVR------------------GRGLLLGVEIVKDRRTKEPAD  374 (431)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE------------------EETTEEEEEEEEETTTTEECT
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEe------------------ecceEEEEEEecCCcccCccH
Confidence            665554311  122222222    33444445556554433                  35678777651        11


Q ss_pred             HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEecc----CCHHHHHHHHHHHHhc
Q 019543          263 ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGI----EDVNDLISDLDKALRT  336 (339)
Q Consensus       263 ~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~----e~~~~li~~l~~al~~  336 (339)
                      ....++.+.+...|+..+.      +..+                 -..+.||++.-+    ++.++.++.|.++|++
T Consensus       375 ~~~~~i~~~~~~~Gl~~~~------~~~~-----------------~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~  429 (431)
T d1zoda1         375 GLGAKITRECMNLGLSMNI------VQLP-----------------GMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  429 (431)
T ss_dssp             THHHHHHHHHHHTTEECCE------ECCT-----------------TSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCe------eeec-----------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            2244556655555543321      1111                 134689999665    4455555666666654

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=6.7e-10  Score=104.34  Aligned_cols=175  Identities=14%  Similarity=0.142  Sum_probs=106.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcC-----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH---
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN---  182 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~-----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~---  182 (339)
                      ++|.++|++||+++|+||++. .|-.+.     ......||++  ++|.+++.... .|++++++ ++.+.+.....   
T Consensus       229 ~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~~p-~~av~~~~-~i~~~~~~~~~~~~  304 (429)
T d1s0aa_         229 KRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMT-LSATLTTR-EVAETISNGEAGCF  304 (429)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSC-CEEEEECH-HHHHHHHTSTTSSC
T ss_pred             HHHHHHHHHcCcceehhhccccccccccccccccceecccccc--ccccccccccc-ccchhhHH-HHHhccCCCCCcce
Confidence            999999999999999999984 332221     1233458877  58999764333 45666654 56555532110   


Q ss_pred             --hcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhCC---CCceEEecCCCCCCCchHhHhhhcCCCcceE
Q 019543          183 --AEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLASH---PRVKKVNYAGLPEHPGHELHYSQAKGAGSVL  255 (339)
Q Consensus       183 --~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~~---~~i~~v~~p~~~~~~~~~~~~~~~~~~~~iv  255 (339)
                        ..+..-+|+.++++...|+.+..  ..++..+..+++.+.|+++   +.|..|                  ++.|.++
T Consensus       305 ~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------rg~Gl~~  366 (429)
T d1s0aa_         305 MHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADV------------------RVLGAIG  366 (429)
T ss_dssp             SCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEE------------------EEETTEE
T ss_pred             eecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEE------------------eecccEE
Confidence              12344578888877777776632  3444555666777777543   222222                  3467788


Q ss_pred             EEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe----ccCCHHHHHHHHH
Q 019543          256 SFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLD  331 (339)
Q Consensus       256 s~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv----g~e~~~~li~~l~  331 (339)
                      .|++..+....++.+.+...|+.+.          |                  ..+.||++.    +-++.+++++.|.
T Consensus       367 ~~e~~~~~~~~~~~~~~~~~Gl~~~----------~------------------~g~~i~~~Ppl~it~~eid~~~~~l~  418 (429)
T d1s0aa_         367 VVETTHPVNMAALQKFFVEQGVWIR----------P------------------FGKLIYLMPPYIILPQQLQRLTAAVN  418 (429)
T ss_dssp             EEEESSCBCHHHHHHHHHHTTEECC----------C------------------BTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred             EEEecCcccHHHHHHHHHHCCcEEE----------e------------------cCCEEEEeCCcCCCHHHHHHHHHHHH
Confidence            8887655555566666666565433          1                  124677774    4455666666666


Q ss_pred             HHHhc
Q 019543          332 KALRT  336 (339)
Q Consensus       332 ~al~~  336 (339)
                      ++|++
T Consensus       419 ~al~e  423 (429)
T d1s0aa_         419 RAVQD  423 (429)
T ss_dssp             HHTSS
T ss_pred             HHHHh
Confidence            66653

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.14  E-value=3.8e-10  Score=102.84  Aligned_cols=238  Identities=13%  Similarity=0.008  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHhHhCCC--eEEEcCcHH-HHHH-H-HHHhcCCCCEEEEcCCCccchHHHH--H-----------------
Q 019543           56 TRDALESLLAKLDKAD--RALCFTSGM-AALA-A-VTHLLGTGEEIVAGDDLYGGTDRLL--S-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~--~~l~~~sG~-~A~~-~-il~ll~~GD~Vi~~~~~y~~~~~~~--~-----------------  111 (339)
                      ..++.++.++++++++  ..++|++|+ +++. + ...+.++++.|++...-+.+.....  .                 
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1w23a_          49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQ  128 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSC
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeecccccccc
Confidence            5678899999999975  466666664 3443 3 3347788888887654333322111  1                 


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cCcccCCCeEEEeccccccccCCCceE
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SRPLELGADIVMHSATKFIAGHSDVMA  163 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~a~g~~-~~~~~~~~Di~~~S~sK~l~g~~~~~g  163 (339)
                                                 ++|.++|+++|+++++|.+++.|.. .+.-.+++|++.++-.|+++  +.  +
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~--~~--~  204 (360)
T d1w23a_         129 SIPDFSEFQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPS--GV--T  204 (360)
T ss_dssp             SCCCGGGCCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCT--TC--E
T ss_pred             chhhhhhcccccccceeEecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccC--Cc--c
Confidence                                       8899999999999999999998865 34445666666655555443  32  3


Q ss_pred             EEEEEcChhHHHH---------HHHHHHh--cCCCCChHHHHHH---H-hch--hhHHHHHHHHHHHHHHHHHHHhCCCC
Q 019543          164 GVLAVKGERLAKE---------LYFLQNA--EGSGLAPFDCWIC---L-RGV--KTMALRVEKQQDNAQKIAEFLASHPR  226 (339)
Q Consensus       164 G~v~~~~~~l~~~---------l~~~~~~--~~~~~~~~~a~~~---~-~~l--~~~~~r~~~~~~~a~~l~~~L~~~~~  226 (339)
                      |+++.++ ...+.         .......  .............   . ..+  .......++...+...+..+......
T Consensus       205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
T d1w23a_         205 VVIVKKD-LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNG  283 (360)
T ss_dssp             EEEEEHH-HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             eeeEech-hhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence            4444332 11100         0011111  1111111111111   1 111  11122333333444455555554443


Q ss_pred             ceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHh
Q 019543          227 VKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQA  306 (339)
Q Consensus       227 i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~  306 (339)
                      ..... .    .+.       .++ .++++|.+.+......|...|.+.||.++-|.      ++       +       
T Consensus       284 ~~~~~-~----~~~-------~rS-~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~------~~-------~-------  330 (360)
T d1w23a_         284 FYVGH-A----EKG-------SRS-LMNVTFNLRNEELNQQFLAKAKEQGFVGLNGH------RS-------V-------  330 (360)
T ss_dssp             SSEES-S----CGG-------GBC-SSEEEEECSSHHHHHHHHHHHHHTTEESCBCC------TT-------T-------
T ss_pred             ccccC-C----Chh-------hcc-eeEEEEEcCCCccHHHHHHHHHHCCCeeeeCC------Cc-------c-------
Confidence            32211 1    110       122 35899998776666788888888899876552      11       0       


Q ss_pred             CCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          307 RGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       307 ~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                           +-+|+|+....+.+.++.|.+++++
T Consensus       331 -----ggiRiS~~~~~t~e~V~~Li~~~~~  355 (360)
T d1w23a_         331 -----GGCRASIYNAVPIDACIALRELMIQ  355 (360)
T ss_dssp             -----CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -----CcEEEEeeCCCCHHHHHHHHHHHHH
Confidence                 2389999665555556666666553

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=1.7e-09  Score=99.99  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=75.3

Q ss_pred             HHHHHHHhH----hCC---CeEEEcCcHHHHHH--H-HHHhcCCCCEEEEcCCCccchHHHHH-----------------
Q 019543           59 ALESLLAKL----DKA---DRALCFTSGMAALA--A-VTHLLGTGEEIVAGDDLYGGTDRLLS-----------------  111 (339)
Q Consensus        59 ~le~~la~~----~g~---~~~l~~~sG~~A~~--~-il~ll~~GD~Vi~~~~~y~~~~~~~~-----------------  111 (339)
                      +|++.++++    .+.   ...+++++|+.+..  + ++..+.+||+|+++++.|+.....++                 
T Consensus        73 ~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~  152 (394)
T d2ay1a_          73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETR  152 (394)
T ss_dssp             HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTT
T ss_pred             HHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcc
Confidence            455555554    332   34666777765543  3 34578999999999998876554433                 


Q ss_pred             ---------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCc----c------cC
Q 019543          112 ---------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRP----L------EL  142 (339)
Q Consensus       112 ---------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~----~------~~  142 (339)
                                                             ++|+++|++|+++||+|++|..-.+...    .      ..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~  232 (394)
T d2ay1a_         153 GVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRI  232 (394)
T ss_dssp             EECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhc
Confidence                                                   9999999999999999999976544211    0      11


Q ss_pred             CCeEEEeccccccccCCCceEEEEEEcC
Q 019543          143 GADIVMHSATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       143 ~~Di~~~S~sK~l~g~~~~~gG~v~~~~  170 (339)
                      ..-+++.|+||.++.+|.+. |++++..
T Consensus       233 ~~~~~~~s~sk~~~~~G~R~-G~~~~~~  259 (394)
T d2ay1a_         233 PEVLIAASCSKNFGIYRERT-GCLLALC  259 (394)
T ss_dssp             SSEEEEEECTTTTTCGGGCE-EEEEEEC
T ss_pred             ccccccccccccccCCcccc-cchhhch
Confidence            12467788999999877654 5665554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.4e-10  Score=106.22  Aligned_cols=113  Identities=13%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhHhC--------CCeEEEcCcHH--HH--HHH-HHHhcCCCCEEEEcCCCccchHHHHH------------
Q 019543           57 RDALESLLAKLDK--------ADRALCFTSGM--AA--LAA-VTHLLGTGEEIVAGDDLYGGTDRLLS------------  111 (339)
Q Consensus        57 ~~~le~~la~~~g--------~~~~l~~~sG~--~A--~~~-il~ll~~GD~Vi~~~~~y~~~~~~~~------------  111 (339)
                      ..+|++.++++..        .+..+++.++.  .+  +.+ +..++.|||+|++++|.|......++            
T Consensus        72 ~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~  151 (397)
T d3tata_          72 LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWY  151 (397)
T ss_dssp             CHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCC
T ss_pred             CHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecc
Confidence            3467777777653        23344444333  22  333 33468999999999999988765554            


Q ss_pred             --------------------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcC-----cc--
Q 019543          112 --------------------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSR-----PL--  140 (339)
Q Consensus       112 --------------------------------------------~~I~~la~~~g~~livD~a~a~g~~~~-----~~--  140 (339)
                                                                  ++|+++|++||++||+|++|..-.+..     ..  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~  231 (397)
T d3tata_         152 DEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRA  231 (397)
T ss_dssp             CTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHH
T ss_pred             hhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhh
Confidence                                                        899999999999999999997654421     00  


Q ss_pred             --cCC-CeEEEeccccccccCCCceEEEEEEcC
Q 019543          141 --ELG-ADIVMHSATKFIAGHSDVMAGVLAVKG  170 (339)
Q Consensus       141 --~~~-~Di~~~S~sK~l~g~~~~~gG~v~~~~  170 (339)
                        ..+ --+++.|+||.++.+|.+.| +++++.
T Consensus       232 ~~~~~~~~i~~~s~SK~~~~~G~RiG-~~~~~~  263 (397)
T d3tata_         232 IASAGLPALVSNSFSKIFSLYGERVG-GLSVMC  263 (397)
T ss_dssp             HHTTTCCCEECBCCHHHHTBTTTCCB-CCEEEC
T ss_pred             hhhcCCceEEEecCcccccccCcccc-ccccch
Confidence              111 13888999999998887655 555554

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=4.9e-10  Score=101.64  Aligned_cols=237  Identities=13%  Similarity=0.004  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHhHhCCCe--EEE-cCcHHHH-HHHHH-HhcCCCCEEEEcCCCccchHHHH--H-----------------
Q 019543           56 TRDALESLLAKLDKADR--ALC-FTSGMAA-LAAVT-HLLGTGEEIVAGDDLYGGTDRLL--S-----------------  111 (339)
Q Consensus        56 ~~~~le~~la~~~g~~~--~l~-~~sG~~A-~~~il-~ll~~GD~Vi~~~~~y~~~~~~~--~-----------------  111 (339)
                      ..++.++.|++++++++  .++ +++++.+ +.++. .+..++|.+++....+.+.....  +                 
T Consensus        47 l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1bjna_          47 VAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGL  126 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTE
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCCCc
Confidence            46788999999999852  444 4444444 44444 47788888887665444332111  1                 


Q ss_pred             -------------------------------HHHHHHHHHcCCEEEEeCCcCCCCCcCcccCCCeEEEeccccccccCCC
Q 019543          112 -------------------------------RKIAEMAHAHGALLLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD  160 (339)
Q Consensus       112 -------------------------------~~I~~la~~~g~~livD~a~a~g~~~~~~~~~~Di~~~S~sK~l~g~~~  160 (339)
                                                     +++  .++.+++.+++|.+.+.+... .-..++|+.+.|.+|++++++.
T Consensus       127 ~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i--~~~~~~~~v~vDa~~~~~~~~-vd~~~~dv~~~ss~k~~~~~~~  203 (360)
T d1bjna_         127 RAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET--PDFGADVVVAADFSSTILSRP-IDVSRYGVIYAGAQKNIGPAGL  203 (360)
T ss_dssp             EEECCGGGCCCCSSCSCEEECSEETTTTEECCCC--CCCCTTCCEEEECTTTTTSSC-CCGGGCSEEEEETTTTTSSTTC
T ss_pred             chhhhhhhhccCCceeEEEecccccccCccccce--ecccccceeeeeeecccccee-eeeccceeEEEEcccccccCCC
Confidence                                           333  356789999999998776432 1224679999999999997753


Q ss_pred             ceEEEEEEcChhH--------HHHHHHHHHh---cCCCCChHHHHHHH-----hchhhHHHHHHHHHHHHHHHHHHHhCC
Q 019543          161 VMAGVLAVKGERL--------AKELYFLQNA---EGSGLAPFDCWICL-----RGVKTMALRVEKQQDNAQKIAEFLASH  224 (339)
Q Consensus       161 ~~gG~v~~~~~~l--------~~~l~~~~~~---~~~~~~~~~a~~~~-----~~l~~~~~r~~~~~~~a~~l~~~L~~~  224 (339)
                        +|+++..+...        ..........   ......+....+..     ........+.+++.+.+..+.+.+...
T Consensus       204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (360)
T d1bjna_         204 --TIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNS  281 (360)
T ss_dssp             --EEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --ceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence              34444443211        0001111111   11222221111111     111123334444555566666666555


Q ss_pred             CCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHH
Q 019543          225 PRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVR  304 (339)
Q Consensus       225 ~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~  304 (339)
                      ........|   .          .+ ..++++|.+.+......|.+.|+..||.+..|.             ..+     
T Consensus       282 ~~~~~~~~~---~----------~r-s~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~-------------~~~-----  329 (360)
T d1bjna_         282 DFYRNDVAK---R----------NR-SRMNVPFQLADSALDKLFLEESFAAGLHALKGH-------------RVV-----  329 (360)
T ss_dssp             SSEECCBCG---G----------GB-CSSEEEEEESSGGGHHHHHHHHHHTTEECCBCC-------------TTT-----
T ss_pred             ccccccCCc---c----------cc-cceEEEEEcCCcccHHHHHHHHHHCCCEeecCC-------------Ccc-----
Confidence            432211111   0          01 236889998766556778888888888776552             111     


Q ss_pred             HhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          305 QARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       305 ~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                             +.+|+|++...+++.|+.|.++|++
T Consensus       330 -------g~~Ris~~~~~t~edV~~li~~l~e  354 (360)
T d1bjna_         330 -------GGMRASIYNAMPLEGVKALTDFMVE  354 (360)
T ss_dssp             -------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             -------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence                   2489999998888888888888875

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.07  E-value=1.6e-09  Score=102.92  Aligned_cols=146  Identities=17%  Similarity=0.218  Sum_probs=93.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCCCCCc----Ccc--c-CCCeEEEeccccccccCCCceEEEEEEcChhHHHHH-------
Q 019543          112 RKIAEMAHAHGALLLVDNSIMSPVLS----RPL--E-LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKEL-------  177 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~g~~~----~~~--~-~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l-------  177 (339)
                      ++|+++|++||+++.||+|++.....    +..  . ..+|-++.++||+++.|.+  +|+++.++.......       
T Consensus       255 ~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~--~g~~l~r~~~~~~~~~~~~~~~  332 (476)
T d1js3a_         255 LEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD--CSAMWVKRRTDLTGAFKLDPVY  332 (476)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS--CEEEEESCHHHHHGGGC-----
T ss_pred             HHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCc--ceeecccchHHHHHHHhcChhh
Confidence            99999999999999999999754321    111  1 1579999999999997743  577777764322111       


Q ss_pred             -HHHHHh---------cC----CCCChHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCch
Q 019543          178 -YFLQNA---------EG----SGLAPFDCWICLR--GVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  241 (339)
Q Consensus       178 -~~~~~~---------~~----~~~~~~~a~~~~~--~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~  241 (339)
                       ......         ++    -....+..|..++  +.+.+.+.+++..++++++++.+++.|+++.+.-|        
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p--------  404 (476)
T d1js3a_         333 LKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV--------  404 (476)
T ss_dssp             -------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC--------
T ss_pred             hccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC--------
Confidence             100000         00    0111233344333  44567888888899999999999999988765433        


Q ss_pred             HhHhhhcCCCcceEEEeeC-CHHHHHHHHccCCcce
Q 019543          242 ELHYSQAKGAGSVLSFLTG-SLALSKHVVETTKYFS  276 (339)
Q Consensus       242 ~~~~~~~~~~~~ivs~~~~-~~~~~~~~~~~L~~~~  276 (339)
                               ..++++|.+. ......++.++|...|
T Consensus       405 ---------~l~iV~Fr~~~~d~~n~~l~~~l~~~G  431 (476)
T d1js3a_         405 ---------TLGLVCFRLKGSDGLNEALLERINSAR  431 (476)
T ss_dssp             ---------CSSEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred             ---------ceEEEEEEccCChHHHHHHHHHHHhcC
Confidence                     3578999874 4444456777765433

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.2e-09  Score=103.27  Aligned_cols=185  Identities=12%  Similarity=0.029  Sum_probs=107.3

Q ss_pred             HHHHHcCCEEEEeCCcCCCCC--cCc-c-----cCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHH-Hh---
Q 019543          116 EMAHAHGALLLVDNSIMSPVL--SRP-L-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQ-NA---  183 (339)
Q Consensus       116 ~la~~~g~~livD~a~a~g~~--~~~-~-----~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~-~~---  183 (339)
                      ++|+++|+++.||+|++.+..  ..+ .     -.++|.+..|.+|++.++-+  .|+++.+++.......... .+   
T Consensus       229 ~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g--~g~l~~r~~~~~~~~~~~~~~yl~~  306 (450)
T d1pmma_         229 QADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGG  306 (450)
T ss_dssp             HHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEEEETTE
T ss_pred             HHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCC--eeEEEecChhhhhhhcccccCcCCC
Confidence            346778999999999976542  111 1     12689999999999987643  4778787654321111000 00   


Q ss_pred             ----c---CCCCCh--HHHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCc
Q 019543          184 ----E---GSGLAP--FDCWICL--RGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAG  252 (339)
Q Consensus       184 ----~---~~~~~~--~~a~~~~--~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~  252 (339)
                          +   +.....  ...|..+  .+.+.+.+..++..++++++.+.|++.+.++.+. |+.+            ...-
T Consensus       307 ~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~-~~~p------------~~~l  373 (450)
T d1pmma_         307 QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFIC-TGRP------------DEGI  373 (450)
T ss_dssp             EEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEE-ECCT------------TTBS
T ss_pred             CcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-CCCC------------CCce
Confidence                0   111111  1123222  3345567778888899999999999999876554 2211            1134


Q ss_pred             ceEEEeeCCH----HHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHH--
Q 019543          253 SVLSFLTGSL----ALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDL--  326 (339)
Q Consensus       253 ~ivs~~~~~~----~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~l--  326 (339)
                      ++|+|.+.+.    .....+.++|+..|..++.      ...|...              .....+|++++...++++  
T Consensus       374 ~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~------~~~p~~~--------------~~~~~lRvvv~~~~t~e~~d  433 (450)
T d1pmma_         374 PAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPA------FTLGGEA--------------TDIVVMRIMCRRGFEMDFAE  433 (450)
T ss_dssp             SEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCE------EECCTTC--------------TTCEEEEEECCTTCCHHHHH
T ss_pred             EEEEEecCCcccCCCCHHHHHHHHHHcCCeeec------cCcCCCc--------------CCcEEEEEEccCCCCHHHHH
Confidence            6899987432    1245677778777755431      1122110              123569999986554444  


Q ss_pred             --HHHHHHHHh
Q 019543          327 --ISDLDKALR  335 (339)
Q Consensus       327 --i~~l~~al~  335 (339)
                        +++|.++++
T Consensus       434 ~lv~dl~~~v~  444 (450)
T d1pmma_         434 LLLEDYKASLK  444 (450)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence              555555544

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=5.5e-10  Score=105.93  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=101.8

Q ss_pred             HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----ccC--CCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHh
Q 019543          112 RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LEL--GADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNA  183 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~~--~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~  183 (339)
                      ++|.++|++||+++|+||++. .|-.+..     ...  ..|+++  ++|.+++      |++... +.+.. .......
T Consensus       272 ~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~-~~~~~-~~~~~~~  341 (461)
T d1ohwa_         272 RKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHK-EEFRP-NAPYRIF  341 (461)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEEC-GGGSC-SSTTSSC
T ss_pred             HHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------cccccc-ccccc-ccccccc
Confidence            899999999999999999983 3322211     111  257774  6899973      333333 22211 0001111


Q ss_pred             cCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHhC----CCC-ceEEecCCCCCCCchHhHhhhcCCCcceEE
Q 019543          184 EGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAEFLAS----HPR-VKKVNYAGLPEHPGHELHYSQAKGAGSVLS  256 (339)
Q Consensus       184 ~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~~L~~----~~~-i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs  256 (339)
                      .+..-+|..+++++..|+.+.+  ..++..+..+++.+.|++    +|. |..|                  +|.|.++.
T Consensus       342 ~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~v------------------rG~Gl~~~  403 (461)
T d1ohwa_         342 NTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRV------------------RGRGTFCS  403 (461)
T ss_dssp             CSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEE------------------EEETTEEE
T ss_pred             cccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEe------------------eeeeEEEE
Confidence            2345678877777777776532  233444445556555554    332 2222                  35678999


Q ss_pred             EeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEe----ccCCHHHHHHHHHH
Q 019543          257 FLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISV----GIEDVNDLISDLDK  332 (339)
Q Consensus       257 ~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisv----g~e~~~~li~~l~~  332 (339)
                      |++.+.+.+.++++.+...|+.+...                           .++.|||..    +-++.+..++.|.+
T Consensus       404 ie~~~~~~~~~i~~~~~~~Gll~~~~---------------------------~~~~ir~~PpL~it~~eid~~~~~l~~  456 (461)
T d1ohwa_         404 FDTPDESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFRDHHAHLFLNIFSD  456 (461)
T ss_dssp             EECSSHHHHHHHHHHHHHTTEECEEE---------------------------TTTEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHCCeEEeeC---------------------------CCCEEEEeCCcCCCHHHHHHHHHHHHH
Confidence            99988887888888887777654321                           224567654    44666677777777


Q ss_pred             HHhc
Q 019543          333 ALRT  336 (339)
Q Consensus       333 al~~  336 (339)
                      +|++
T Consensus       457 ~l~e  460 (461)
T d1ohwa_         457 ILAD  460 (461)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            7764

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=2.7e-09  Score=98.83  Aligned_cols=233  Identities=17%  Similarity=0.201  Sum_probs=137.1

Q ss_pred             CCchHHHHHHHHHhHhCCC--eEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchHHH------------------
Q 019543           53 GNPTRDALESLLAKLDKAD--RALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTDRL------------------  109 (339)
Q Consensus        53 ~~~~~~~le~~la~~~g~~--~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~~~------------------  109 (339)
                      .++...++.+++.+.....  .+..++||++|+...+.   .......|++-...|+|....                  
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~  156 (387)
T d1vefa1          77 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLV  156 (387)
T ss_dssp             CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCS
T ss_pred             CCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCC
Confidence            3455556666666555443  57889999999975432   234456788777777664210                  


Q ss_pred             -------------H-H----------------------------HHHHHHHHHcCCEEEEeCCcC-CCCCcCc-----cc
Q 019543          110 -------------L-S----------------------------RKIAEMAHAHGALLLVDNSIM-SPVLSRP-----LE  141 (339)
Q Consensus       110 -------------~-~----------------------------~~I~~la~~~g~~livD~a~a-~g~~~~~-----~~  141 (339)
                                   + +                            ++|.++|++||+++|.||++. .|-.+..     ..
T Consensus       157 ~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~  236 (387)
T d1vefa1         157 EPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG  236 (387)
T ss_dssp             SCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT
T ss_pred             CCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCC
Confidence                         0 0                            999999999999999999983 3322221     12


Q ss_pred             CCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHHhcCCCCChHHHHHHHhchhhHHH--HHHHHHHHHHHHHH
Q 019543          142 LGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQNAEGSGLAPFDCWICLRGVKTMAL--RVEKQQDNAQKIAE  219 (339)
Q Consensus       142 ~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~~~~~~~~~a~~~~~~l~~~~~--r~~~~~~~a~~l~~  219 (339)
                      ...|+++  ++|.+++. -..+ .++..+ +..+.........+..-+|+.++++...|+.+..  ..++..+..+++.+
T Consensus       237 v~PDi~~--~gK~l~gG-~~~~-~~~~~~-~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~  311 (387)
T d1vefa1         237 IVPDILT--LAKALGGG-VPLG-VAVMRE-EVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFME  311 (387)
T ss_dssp             CCCSEEE--ECGGGGTT-SSCE-EEEEEH-HHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cCCceee--ecccCCCC-cccc-ccccce-eeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHH
Confidence            3458877  58999864 2344 444443 3433222111112234478888888777777633  35556667778888


Q ss_pred             HHhCCC--CceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCC
Q 019543          220 FLASHP--RVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHA  297 (339)
Q Consensus       220 ~L~~~~--~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~  297 (339)
                      .|+.+.  .|..|                  ++.|.+..|++.+.. ...+.+.+...++.+.         .+      
T Consensus       312 ~L~~l~~~~v~~v------------------rg~Gl~~~ie~~~~~-~~~~~~~~~~~g~l~~---------~~------  357 (387)
T d1vefa1         312 KLRAIPSPKIREV------------------RGMGLMVGLELKEKA-APYIARLEKEHRVLAL---------QA------  357 (387)
T ss_dssp             HHHTSCCTTEEEE------------------EEETTEEEEEESSCS-HHHHHHHHHHHCEECE---------ES------
T ss_pred             HHHhcCCCceEEE------------------eecceEEEEEEeCCc-hHHHHHHHHHCCCeEE---------ec------
Confidence            887652  23222                  345778888885432 2233333333333211         11      


Q ss_pred             CCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          298 SIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       298 ~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                                  .++.||++..+..+++.++.+.+++++
T Consensus       358 ------------g~~~ir~~Ppl~it~~~ld~~~~~i~~  384 (387)
T d1vefa1         358 ------------GPTVIRFLPPLVIEKEDLERVVEAVRA  384 (387)
T ss_dssp             ------------STTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             ------------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence                        236788887776666666666666653

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.94  E-value=4.6e-09  Score=98.46  Aligned_cols=164  Identities=15%  Similarity=0.185  Sum_probs=102.1

Q ss_pred             CchHHHHHHHHHhHhCC-CeEEEcCcHHHHHHHHHH---hcCCCCEEEEcCCCccchH----------------------
Q 019543           54 NPTRDALESLLAKLDKA-DRALCFTSGMAALAAVTH---LLGTGEEIVAGDDLYGGTD----------------------  107 (339)
Q Consensus        54 ~~~~~~le~~la~~~g~-~~~l~~~sG~~A~~~il~---ll~~GD~Vi~~~~~y~~~~----------------------  107 (339)
                      .+....+.+.+.++.+. +.+..++||++|+...+.   .......|+.....|+|..                      
T Consensus        91 ~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~  170 (427)
T d2gsaa_          91 CALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGV  170 (427)
T ss_dssp             CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSS
T ss_pred             hhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCC
Confidence            34556677777776543 567788899999975433   3335677888777776531                      


Q ss_pred             --------------------HHHH----------------------------HHHHHHHHHcCCEEEEeCCcCCCCC-cC
Q 019543          108 --------------------RLLS----------------------------RKIAEMAHAHGALLLVDNSIMSPVL-SR  138 (339)
Q Consensus       108 --------------------~~~~----------------------------~~I~~la~~~g~~livD~a~a~g~~-~~  138 (339)
                                          .+++                            ++|.++|++||+++|+||++. |.- +.
T Consensus       171 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~t-G~r~g~  249 (427)
T d2gsaa_         171 PKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT-GFRIAY  249 (427)
T ss_dssp             CHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BTTTBT
T ss_pred             cccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccc-cceecc
Confidence                                0010                            999999999999999999993 321 11


Q ss_pred             -----cccCCCeEEEeccccccccCCCceEEEEEEcChhHHHHHHHHHH--h-cCCCCChHHHHHHHhchhhHH--HHHH
Q 019543          139 -----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGERLAKELYFLQN--A-EGSGLAPFDCWICLRGVKTMA--LRVE  208 (339)
Q Consensus       139 -----~~~~~~Di~~~S~sK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~--~-~~~~~~~~~a~~~~~~l~~~~--~r~~  208 (339)
                           ......||++  ++|.++|.  ...|++++++ ++.+.+.....  + .+..-+|+.+++++..|+.+.  ...+
T Consensus       250 ~~~~~~~gi~PDi~~--~gK~lggG--~p~~a~~~~~-~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~  324 (427)
T d2gsaa_         250 GGVQEKFGVTPDLTT--LGKIIGGG--LPVGAYGGKR-EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             TCHHHHTTCCCSEEE--ECGGGGTT--SCCEEEEECH-HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchHHhcCCCHHHHh--hhhccCCC--cceeeeeehH-HHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHh
Confidence                 1123458876  58999863  3345566654 56655443211  1 234667888887777776653  2344


Q ss_pred             HHHHHHHHHHHHHhC
Q 019543          209 KQQDNAQKIAEFLAS  223 (339)
Q Consensus       209 ~~~~~a~~l~~~L~~  223 (339)
                      +.+++.+++.+.|++
T Consensus       325 ~~~~~g~~l~~~L~~  339 (427)
T d2gsaa_         325 YLDQITKRLSDGLLA  339 (427)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHH
Confidence            555556666665543

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=2.6e-07  Score=85.95  Aligned_cols=240  Identities=18%  Similarity=0.154  Sum_probs=140.7

Q ss_pred             chHHHHHHHHHhHhCCCeEE-EcCcHHHHH-HHHHH--hcCCCCEEEEcCCCccchHHHHH-------------------
Q 019543           55 PTRDALESLLAKLDKADRAL-CFTSGMAAL-AAVTH--LLGTGEEIVAGDDLYGGTDRLLS-------------------  111 (339)
Q Consensus        55 ~~~~~le~~la~~~g~~~~l-~~~sG~~A~-~~il~--ll~~GD~Vi~~~~~y~~~~~~~~-------------------  111 (339)
                      ...-++++.|+++.|-+.+- -...|.+|. .+++.  -....+.++++..+++.+.....                   
T Consensus       108 q~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~  187 (437)
T d1wyua1         108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR  187 (437)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred             HHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccccc
Confidence            34578999999999987433 344554444 33332  23345677888877765543322                   


Q ss_pred             ---------------------------HHHHHHHHHcCCEEEEeCCc-CCCCCcCcccCCCeEEEeccccccccC---CC
Q 019543          112 ---------------------------RKIAEMAHAHGALLLVDNSI-MSPVLSRPLELGADIVMHSATKFIAGH---SD  160 (339)
Q Consensus       112 ---------------------------~~I~~la~~~g~~livD~a~-a~g~~~~~~~~~~Di~~~S~sK~l~g~---~~  160 (339)
                                                 ++|.+++|+.|+.+++|..- +.+...+|-.+|+||++++ +|.||.|   |+
T Consensus       188 ~~~~~~~~~~Aavmi~~Pnt~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         188 TPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             chhhhhccceeEEEEccccccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence                                       89999999999988887643 3344455667899999998 6655433   22


Q ss_pred             ceEEEEEEcChhHHHHHH-------------------------HHHHh--c-CCCCCh-HH-----HHHHHhchhhHHHH
Q 019543          161 VMAGVLAVKGERLAKELY-------------------------FLQNA--E-GSGLAP-FD-----CWICLRGVKTMALR  206 (339)
Q Consensus       161 ~~gG~v~~~~~~l~~~l~-------------------------~~~~~--~-~~~~~~-~~-----a~~~~~~l~~~~~r  206 (339)
                      .-+|++++++ ++...+.                         ..++.  . +.+.+. +.     +++...+=+-+.+.
T Consensus       267 P~~G~~a~~~-~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~i  345 (437)
T d1wyua1         267 PHFGFLATKK-AFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREV  345 (437)
T ss_dssp             SCCEEEEECG-GGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cccccccccc-hhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHH
Confidence            3468888875 4433221                         01111  1 112221 11     12222222234444


Q ss_pred             HHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCchHhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCccc
Q 019543          207 VEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGHELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKS  286 (339)
Q Consensus       207 ~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s  286 (339)
                      -++...|+.++++.|.++++++. .++.    +           .-.-+.+.++.  ++..+.++|..+|+..  |.   
T Consensus       346 a~~a~~~A~yl~~~L~~~~g~~~-~~~~----~-----------~f~ef~v~~~~--~~~~i~k~L~d~G~~~--~~---  402 (437)
T d1wyua1         346 ALKSVEMAHKLHALLLEVPGVRP-FTPK----P-----------FFNEFALALPK--DPEAVRRALAERGFHG--AT---  402 (437)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCEE-CSCS----S-----------BCSEEEEECSS--CHHHHHHHHHHTTCCC--CE---
T ss_pred             HHHHHHHHHHHHHHhhhcCCeec-cCCC----C-----------eeeEEEEECCC--CHHHHHHHHHhCCCCC--Cc---
Confidence            55566889999999999888753 2221    1           11223333332  2456667776655521  11   


Q ss_pred             ceeccccccCCCCCHHHHHhCCCCCCeEEEEeccCCHHHHHHHHHHHHhc
Q 019543          287 LISMPCFMSHASIPVEVRQARGLTEDLVRISVGIEDVNDLISDLDKALRT  336 (339)
Q Consensus       287 ~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e~~~~li~~l~~al~~  336 (339)
                       ...|.                +.++.+.|+++..++++.|+.|.++|++
T Consensus       403 -~~~~~----------------~~~~~lli~~TE~~tkeeiD~~v~al~e  435 (437)
T d1wyua1         403 -PVPRE----------------YGENLALFAATELHEEEDLLALREALKE  435 (437)
T ss_dssp             -ECCTT----------------SCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             -ccccC----------------CCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence             11111                2457899999998999999999999986

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=0.00015  Score=67.61  Aligned_cols=184  Identities=15%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             HHHHHHHHHcCCEEEEeCCcCC--CCCcCcccCCCeEEEeccccccccC---CCceEEEEEEcChhHHHHHHHH------
Q 019543          112 RKIAEMAHAHGALLLVDNSIMS--PVLSRPLELGADIVMHSATKFIAGH---SDVMAGVLAVKGERLAKELYFL------  180 (339)
Q Consensus       112 ~~I~~la~~~g~~livD~a~a~--g~~~~~~~~~~Di~~~S~sK~l~g~---~~~~gG~v~~~~~~l~~~l~~~------  180 (339)
                      +++.+++|++|..+++|.+...  .....+-..++|+++...++.||.|   |+.-.|++.+++ ++..++-..      
T Consensus       222 ~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~-~~~R~~PGRiV~~~~  300 (471)
T d1wyub1         222 LEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKA-HLAPYLPVPLVERGE  300 (471)
T ss_dssp             HHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECG-GGGGGCCSCEEEECS
T ss_pred             hhhHHHHHhccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehh-hhhccCCCceecCCC
Confidence            7899999999999999876432  2233444567788877777776543   334457888875 454333200      


Q ss_pred             -------------HHhcCCCCCh-H---HH--HHHHhchhhHHHHHHHHHHHHHHHHHHHhCCCCceEEecCCCCCCCch
Q 019543          181 -------------QNAEGSGLAP-F---DC--WICLRGVKTMALRVEKQQDNAQKIAEFLASHPRVKKVNYAGLPEHPGH  241 (339)
Q Consensus       181 -------------~~~~~~~~~~-~---~a--~~~~~~l~~~~~r~~~~~~~a~~l~~~L~~~~~i~~v~~p~~~~~~~~  241 (339)
                                   ++. ..+.+. +   .+  ++.+.+-+-+.+--++...++.++++.|+. ++++. .++.    |  
T Consensus       301 ~~~~~~~~REqhIrRe-~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~-~~~~----~--  371 (471)
T d1wyub1         301 EGFYLDFDRPKSIGRV-RSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRV-PYDG----P--  371 (471)
T ss_dssp             SCEEEECCCTTCCCCS-SSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBC-SSCS----S--
T ss_pred             ccccccCCCcccccch-hhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCcee-ccCc----c--
Confidence                         010 111121 1   11  222233334455556667889999999975 56542 2221    1  


Q ss_pred             HhHhhhcCCCcceEEEeeCCHHHHHHHHccCCcceeecccCCcccceeccccccCCCCCHHHHHhCCCCCCeEEEEeccC
Q 019543          242 ELHYSQAKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPVEVRQARGLTEDLVRISVGIE  321 (339)
Q Consensus       242 ~~~~~~~~~~~~ivs~~~~~~~~~~~~~~~L~~~~i~v~~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~lRisvg~e  321 (339)
                               +-.-+.+.+.....+..+.++|.++|+.   ++   +..+|.                ..++.+-|+++.-
T Consensus       372 ---------ff~EFvv~~~~~~~~~~i~k~L~~~G~~---~~---~~~~p~----------------~~~~~llv~vTE~  420 (471)
T d1wyub1         372 ---------SMHEFVAQPPEGFRALDLAKGLLELGFH---PP---TVYFPL----------------IVKEALMVEPTET  420 (471)
T ss_dssp             ---------CCSCEEEBCSTTCCHHHHHHHHHHTTCC---CC---EESCST----------------TSTTCEEECCCTT
T ss_pred             ---------eeeEEeecCCCCCCHHHHHHHHHHcCCC---CC---cccCcC----------------CCCCeEEEecCCC
Confidence                     1112223333222334566666555542   21   112221                2356788999998


Q ss_pred             CHHHHHHHHHHHHhc
Q 019543          322 DVNDLISDLDKALRT  336 (339)
Q Consensus       322 ~~~~li~~l~~al~~  336 (339)
                      ++++.||.|.+||++
T Consensus       421 ~tkedID~lv~aL~~  435 (471)
T d1wyub1         421 EAKETLEAFAEAMGA  435 (471)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            888889999998875