Citrus Sinensis ID: 019554

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERKFLR
ccccccccHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHcHHHHHHccccccHHHHHHHcccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccc
ccccccccHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHccccccccEEEEccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHcccHccHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcc
meedidgdiediealnyddldnvskLQKSQRFTDIMQKVEAALQngsdisnhgmvleddpeyqlivdcnvlsvdiENEIVIIHNFIrdkyrlkfpeleslvhhpiDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTasttsgkplpedvLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLgakkknlagfstATSQFRVGYLEQteifqstppplRMRACRLLAAKSTLAArvdstrgdpsgtagrSFREEIHKKIEkwqepppakqpkplpvpdsepkkkrggrRLRKMKERKFLR
meedidgdiediealnyddldnvSKLQKSQRFTDIMQKVEAAlqngsdisnHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTasttsgkplpedVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEifqstpppLRMRACRLLAAKStlaarvdstrgdpsgtagrsFREEIHKKiekwqepppakqpkplpvpdsepkkkrggrrlrkmkerkflr
MeedidgdiedieALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIdacdralaldaakkkvldFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEpppakqpkplpvpDSEPkkkrggrrlrkmkerkFLR
****************Y*****************I***************NHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAA************************************************************************
******G****IEALNYDDLDNVSKLQKSQRFTDIM************************EYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVS**A******PLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLL***************QFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE*********************************KERKF**
MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKST*****************RSFREEIHKKIEKWQE************************************
*****DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEP*********PVP***********************
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MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERKFLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q8CCF0 499 U4/U6 small nuclear ribon yes no 0.908 0.617 0.504 8e-87
Q5U5C5 498 U4/U6 small nuclear ribon N/A no 0.911 0.620 0.501 2e-85
Q6NVP6 498 U4/U6 small nuclear ribon yes no 0.967 0.658 0.505 2e-84
Q8WWY3 499 U4/U6 small nuclear ribon yes no 0.908 0.617 0.507 1e-83
Q7SXM7 508 U4/U6 small nuclear ribon yes no 0.920 0.614 0.490 2e-83
O42904 518 Pre-mRNA-processing facto yes no 0.929 0.608 0.430 2e-60
P49704 494 Pre-mRNA-processing facto yes no 0.769 0.528 0.324 2e-34
Q4PBF2 582 Nucleolar protein 58 OS=U N/A no 0.631 0.367 0.285 4e-25
Q9P7S7508 Nucleolar protein 58 OS=S no no 0.772 0.515 0.277 1e-24
O04658533 Probable nucleolar protei no no 0.820 0.521 0.278 2e-24
>sp|Q8CCF0|PRP31_MOUSE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3 Back     alignment and function desciption
 Score =  320 bits (821), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 223/315 (70%), Gaps = 7/315 (2%)

Query: 9   IEDIEA-----LNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQ 63
           IED++      L+ D + +++KL  S+ F +IM K+E  +   +++S     +E  PEY+
Sbjct: 32  IEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEYISKQANVSEVMGPVEAAPEYR 91

Query: 64  LIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL--T 121
           +IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN +D    
Sbjct: 92  VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151

Query: 122 LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESR 181
             +L+ +L +A IMVVSVTASTT G+ L ++ L++  +ACD AL L+A+K ++ ++VESR
Sbjct: 152 NENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESR 211

Query: 182 MSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRV 241
           MS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     
Sbjct: 212 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 271

Query: 242 GYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKW 301
           GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KW
Sbjct: 272 GYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW 331

Query: 302 QEPPPAKQPKPLPVP 316
           QEPPP KQ KPLP P
Sbjct: 332 QEPPPVKQVKPLPAP 346
Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.
Mus musculus (taxid: 10090)
>sp|Q5U5C5|PRP31_XENLA U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q6NVP6|PRP31_XENTR U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q8WWY3|PRP31_HUMAN U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2 Back     alignment and function description
>sp|Q7SXM7|PRP31_DANRE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|O42904|PRP31_SCHPO Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp31 PE=3 SV=1 Back     alignment and function description
>sp|P49704|PRP31_YEAST Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP31 PE=1 SV=2 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7S7|NOP58_SCHPO Nucleolar protein 58 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop58 PE=1 SV=1 Back     alignment and function description
>sp|O04658|NOP5A_ARATH Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
224064342 486 predicted protein [Populus trichocarpa] 0.988 0.689 0.901 1e-180
296086542 523 unnamed protein product [Vitis vinifera] 0.988 0.640 0.907 1e-179
225424693 489 PREDICTED: U4/U6 small nuclear ribonucle 0.988 0.685 0.907 1e-179
224128007 483 predicted protein [Populus trichocarpa] 0.988 0.693 0.895 1e-178
255568742 774 U4/U6 small nuclear ribonucleoprotein Pr 0.988 0.432 0.913 1e-174
356558773 486 PREDICTED: U4/U6 small nuclear ribonucle 0.988 0.689 0.875 1e-172
356571467 486 PREDICTED: U4/U6 small nuclear ribonucle 0.988 0.689 0.872 1e-172
124359772 484 Pre-mRNA processing ribonucleoprotein, b 0.967 0.677 0.881 1e-171
357504275438 U4/U6 small nuclear ribonucleoprotein Pr 0.967 0.748 0.881 1e-170
449435390 476 PREDICTED: U4/U6 small nuclear ribonucle 0.988 0.703 0.877 1e-168
>gi|224064342|ref|XP_002301428.1| predicted protein [Populus trichocarpa] gi|222843154|gb|EEE80701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/335 (90%), Positives = 321/335 (95%)

Query: 1   MEEDIDGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDP 60
           MEED+DGD+ DIEALNYDDLD+VSKLQK+QRF DIMQKVE ALQ GSD+ +HGMVLEDDP
Sbjct: 34  MEEDVDGDLADIEALNYDDLDSVSKLQKTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDP 93

Query: 61  EYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL 120
           EYQLIV+CN LSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL
Sbjct: 94  EYQLIVNCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDL 153

Query: 121 TLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVES 180
           TLVD+EGL+P+AI MV+SVTASTTSGKPLPE+VLQKTIDAC+RALALD+AKKKVLDFVE+
Sbjct: 154 TLVDMEGLIPAAIRMVISVTASTTSGKPLPEEVLQKTIDACNRALALDSAKKKVLDFVET 213

Query: 181 RMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFR 240
           RM YIAPNLSAIVGSAVAAKLMG AGGL+ALAKMPACNVQLLGAKKKNLAGFSTATSQFR
Sbjct: 214 RMGYIAPNLSAIVGSAVAAKLMGMAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFR 273

Query: 241 VGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEK 300
           VGY+EQTE+FQSTPP LRMRA RLLAAKSTLAARVDSTRGDPSG  GR+ REEIHKKIEK
Sbjct: 274 VGYIEQTEVFQSTPPSLRMRAGRLLAAKSTLAARVDSTRGDPSGNTGRTLREEIHKKIEK 333

Query: 301 WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKER 335
           WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKER
Sbjct: 334 WQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKER 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296086542|emb|CBI32131.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424693|ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128007|ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|222860991|gb|EEE98533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255568742|ref|XP_002525342.1| U4/U6 small nuclear ribonucleoprotein Prp31, putative [Ricinus communis] gi|223535305|gb|EEF36980.1| U4/U6 small nuclear ribonucleoprotein Prp31, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356558773|ref|XP_003547677.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|356571467|ref|XP_003553898.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|124359772|gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] Back     alignment and taxonomy information
>gi|357504275|ref|XP_003622426.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula] gi|355497441|gb|AES78644.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435390|ref|XP_004135478.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2195698 485 emb1220 "AT1G60170" [Arabidops 0.902 0.630 0.735 1.3e-109
MGI|MGI:1916238 499 Prpf31 "PRP31 pre-mRNA process 0.852 0.579 0.474 1.2e-65
UNIPROTKB|E1BM48 499 PRPF31 "Uncharacterized protei 0.852 0.579 0.477 2.5e-65
UNIPROTKB|F1PKI0 499 PRPF31 "Uncharacterized protei 0.852 0.579 0.477 2.5e-65
UNIPROTKB|E7ESA8450 PRPF31 "U4/U6 small nuclear ri 0.852 0.642 0.477 3.2e-65
UNIPROTKB|Q8WWY3 499 PRPF31 "U4/U6 small nuclear ri 0.852 0.579 0.477 3.2e-65
UNIPROTKB|F1RNI3 499 PRPF31 "Uncharacterized protei 0.852 0.579 0.474 5.2e-65
UNIPROTKB|Q5U5C5 498 prpf31 "U4/U6 small nuclear ri 0.852 0.580 0.477 1.1e-64
UNIPROTKB|Q6NVP6 498 prpf31 "U4/U6 small nuclear ri 0.852 0.580 0.470 4.7e-64
UNIPROTKB|E7EVX8 493 PRPF31 "U4/U6 small nuclear ri 0.834 0.574 0.474 6.9e-63
TAIR|locus:2195698 emb1220 "AT1G60170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 225/306 (73%), Positives = 243/306 (79%)

Query:    15 LNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVD 74
             LNYDDLDNVSKLQKSQR+ DIM KVE AL   SD +  G VLEDDPEY+LIVDCN LSVD
Sbjct:    46 LNYDDLDNVSKLQKSQRYADIMHKVEEALGKDSDGAEKGTVLEDDPEYKLIVDCNQLSVD 105

Query:    75 IENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAII 134
             IENEIVI+HNFI+DKY+LKF ELESLVHHPIDYA VVKKIGNE DL LVDL  LLPSAII
Sbjct:   106 IENEIVIVHNFIKDKYKLKFQELESLVHHPIDYACVVKKIGNETDLALVDLADLLPSAII 165

Query:   135 MVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVG 194
             MVVSVTA TT G  LPEDVLQK +                  FVES+M  IAPNLSAIVG
Sbjct:   166 MVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMGSIAPNLSAIVG 225

Query:   195 SAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTP 254
             SAVAAKLMGTAGGLSALAKMPACNVQ+LG K+KNLAGFS+ATSQ RVGYLEQTEI+QSTP
Sbjct:   226 SAVAAKLMGTAGGLSALAKMPACNVQVLGHKRKNLAGFSSATSQSRVGYLEQTEIYQSTP 285

Query:   255 PPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXX 314
             P L+ RA RL+AAKSTLAARVD+TRGDP G +G++FREEI KKIEKWQE           
Sbjct:   286 PGLQARAGRLVAAKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQEPPPARQPKPLP 345

Query:   315 XXDSEP 320
               DSEP
Sbjct:   346 VPDSEP 351
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
MGI|MGI:1916238 Prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM48 PRPF31 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKI0 PRPF31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7ESA8 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWY3 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNI3 PRPF31 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U5C5 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NVP6 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E7EVX8 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8CCF0PRP31_MOUSENo assigned EC number0.50470.90850.6172yesno
Q8WWY3PRP31_HUMANNo assigned EC number0.50790.90850.6172yesno
Q6NVP6PRP31_XENTRNo assigned EC number0.50590.96750.6586yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021631
hypothetical protein (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_XIII3357
hypothetical protein (820 aa)
    • • 0.511
estExt_fgenesh4_pg.C_LG_IX0484
phenylalanyl-tRNA synthetase alpha chain (EC-6.1.1.20) (484 aa)
  ••  • 0.488
gw1.82.79.1
annotation not avaliable (141 aa)
  •     0.461
eugene3.00041113
hypothetical protein (144 aa)
  •     0.445
estExt_fgenesh4_kg.C_LG_XVII0009
SubName- Full=Putative uncharacterized protein; (144 aa)
  •     0.444
eugene3.00140720
SubName- Full=Putative uncharacterized protein; (188 aa)
  •     0.426
eugene3.00130126
SubName- Full=Putative uncharacterized protein; (187 aa)
  •     0.417
eugene3.00021777
hypothetical protein (187 aa)
  •     0.408
eugene3.01330055
SubName- Full=Putative uncharacterized protein; (187 aa)
  •     0.407
fgenesh4_pm.C_LG_III000548
RecName- Full=Ribosomal protein S27; (86 aa)
  • •   0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 3e-60
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 8e-59
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 1e-32
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 6e-22
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 7e-21
pfam09785124 pfam09785, Prp31_C, Prp31 C terminal domain 1e-12
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  198 bits (504), Expect = 3e-60
 Identities = 107/283 (37%), Positives = 159/283 (56%), Gaps = 10/283 (3%)

Query: 57  EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116
           E D E +LI+       DI+ EI ++   +R+ Y   FPEL SLV     YA++V  +GN
Sbjct: 110 EVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGN 169

Query: 117 EMDLT---LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKK 173
             ++    L DL   LP  I + ++  A  + G  L E+ +    +  +  L L   +++
Sbjct: 170 RENINKESLKDLGFALPD-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQ 228

Query: 174 VLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS 233
           + +++ES+MS IAPNL+A+VG  + A+L+  AGGL+ LAKMPA  +Q+LGA+K       
Sbjct: 229 LEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTRLAKMPASTIQVLGAEKALFRALK 288

Query: 234 TATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293
           T     + G + Q+ + Q +PP  R +  R LAAK  +AAR+D+  G+P    G S REE
Sbjct: 289 TGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPD---GISLREE 345

Query: 294 IHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERK 336
           + K+IEK +E PP    K  P  D   KK+R GR  RK KE+K
Sbjct: 346 LEKRIEKLKEKPPKPPTKAKPERD---KKERPGRYRRKKKEKK 385

Length = 395
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|220400 pfam09785, Prp31_C, Prp31 C terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
KOG2574 492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.84
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-112  Score=824.51  Aligned_cols=333  Identities=61%  Similarity=0.937  Sum_probs=323.7

Q ss_pred             ccchHhhhhcCCcchhhhHhhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 019554            6 DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNF   85 (339)
Q Consensus         6 ~~~~~~~~~~~~~~v~~~a~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~   85 (339)
                      +.++..+..+.++||+.|+||++|.+|.++|+++++|+.++....+..+++|++|||++||+||++..+|||||+++|+|
T Consensus        38 ~a~~~~~~~l~~dsv~~v~kL~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~F  117 (492)
T KOG2574|consen   38 DAEMENLLTLTYDSVESVSKLAKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNF  117 (492)
T ss_pred             cccccCchhhhhhhHHHHHHHHhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHH
Confidence            34445566778999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             HHHHhcccCccccccccChHHHHHHHHHhcCCCCCCcccccc--cCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 019554           86 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEG--LLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDR  163 (339)
Q Consensus        86 lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~--iL~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~  163 (339)
                      |||||+.|||||+|||+||++|+++|+.|||+.|...++++.  ||++++||+|+|||+||.|..|+++++++|.++|++
T Consensus       118 ikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~  197 (492)
T KOG2574|consen  118 IKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEM  197 (492)
T ss_pred             HHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987777664  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcce
Q 019554          164 ALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGY  243 (339)
Q Consensus       164 i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~  243 (339)
                      +++|+..|++|.+||+|||++||||||++||+.+||+||++||||+.||+|||||||+||++|++++||++.+..||+||
T Consensus       198 a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gy  277 (492)
T KOG2574|consen  198 AEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGY  277 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchhhhhhccchhccccccccccCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 019554          244 LEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK  323 (339)
Q Consensus       244 iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i~~ki~k~~epp~~k~~k~LP~P~~~~kkk  323 (339)
                      ||+|++||++||++|+||+|+|||||+||||||++|++++|.+|.+||++|++||+||+||||.+.+||||+|+|+||||
T Consensus       278 ly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKk  357 (492)
T KOG2574|consen  278 LYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKK  357 (492)
T ss_pred             eeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhhhhcC
Q 019554          324 RGGRRLRKMKERKFL  338 (339)
Q Consensus       324 RgGrr~Rk~Ke~~~~  338 (339)
                      |||||+|||||||+|
T Consensus       358 RgGRR~RKmKEr~~l  372 (492)
T KOG2574|consen  358 RGGRRFRKMKERYAL  372 (492)
T ss_pred             ccchHHHHHHHHhhh
Confidence            999999999999997

>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 4e-65
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 4e-65
3nmu_A379 Crystal Structure Of Substrate-Bound Halfmer Box CD 2e-16
2nnw_A376 Alternative Conformations Of Nop56/58-fibrillarin C 2e-16
3nvk_A376 Structural Basis For Substrate Placement By An Arch 2e-16
3icx_A255 Crystal Structure Of Sulfolobus Solfataricus Nop5 ( 2e-16
3id5_A388 Crystal Structure Of Sulfolobus Solfataricus CD RNP 2e-16
3nvm_A371 Structural Basis For Substrate Placement By An Arch 3e-16
3gqu_A169 Pyrococcus Horikoshii Nop5 Rna Binding Domain Lengt 5e-12
1nt2_B258 Crystal Structure Of FibrillarinNOP5P COMPLEX Lengt 2e-08
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  244 bits (624), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/250 (51%), Positives = 171/250 (68%), Gaps = 2/250 (0%)
Query: 56  LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIG 115
           +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++G
Sbjct: 11  VEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELG 70
Query: 116 NEMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIXXXXXXXXXXXXXXX 173
           N +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++                 
Sbjct: 71  NSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHR 130
Query: 174 XXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS 233
              +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS
Sbjct: 131 IYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFS 190
Query: 234 TATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293
           + +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++E
Sbjct: 191 STSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 250
Query: 294 IHKKIEKWQE 303
           I +K +KWQE
Sbjct: 251 IERKFDKWQE 260
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure
>pdb|3NMU|A Chain A, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP Length = 379 Back     alignment and structure
>pdb|2NNW|A Chain A, Alternative Conformations Of Nop56/58-fibrillarin Complex And Implication For Induced-fit Assenly Of Box C/d Rnps Length = 376 Back     alignment and structure
>pdb|3NVK|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 376 Back     alignment and structure
>pdb|3ICX|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (135-380) Length = 255 Back     alignment and structure
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half CD RNA Length = 388 Back     alignment and structure
>pdb|3NVM|A Chain A, Structural Basis For Substrate Placement By An Archaeal Box CD Ribonucleoprotein Particle Length = 371 Back     alignment and structure
>pdb|3GQU|A Chain A, Pyrococcus Horikoshii Nop5 Rna Binding Domain Length = 169 Back     alignment and structure
>pdb|1NT2|B Chain B, Crystal Structure Of FibrillarinNOP5P COMPLEX Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 1e-86
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 7e-82
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 6e-80
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 3e-79
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 3e-58
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 8e-52
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 2e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
 Score =  260 bits (666), Expect = 1e-86
 Identities = 136/250 (54%), Positives = 185/250 (74%), Gaps = 2/250 (0%)

Query: 56  LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIG 115
           +E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++G
Sbjct: 11  VEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELG 70

Query: 116 NEMDLT--LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKK 173
           N +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++  +ACD AL L+A+K +
Sbjct: 71  NSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHR 130

Query: 174 VLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFS 233
           + ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS
Sbjct: 131 IYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFS 190

Query: 234 TATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREE 293
           + +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++E
Sbjct: 191 STSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDE 250

Query: 294 IHKKIEKWQE 303
           I +K +KWQE
Sbjct: 251 IERKFDKWQE 260
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
4fbj_A261 CIF, hypothetical protein; effector-HOST target co 84.61
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
Probab=100.00  E-value=1.5e-88  Score=638.31  Aligned_cols=253  Identities=54%  Similarity=0.862  Sum_probs=233.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCC--ccccccc
Q 019554           51 NHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLT--LVDLEGL  128 (339)
Q Consensus        51 ~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~--~~~L~~i  128 (339)
                      ...++++++|||++|+++|+++++||+||+.+|+||||||+||||||++||+||.+|+++|+.|||+.+++  ..+|.++
T Consensus         6 ~~~~~~e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~i   85 (260)
T 2ozb_B            6 EVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQI   85 (260)
T ss_dssp             ------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGT
T ss_pred             cccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999998876  4469999


Q ss_pred             CCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCc
Q 019554          129 LPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGL  208 (339)
Q Consensus       129 L~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL  208 (339)
                      |+++++|+|+++|++|+|.++|++|+..|..+|+++++|+++|++|.+||++||..+|||||+|||+.+|||||++||||
T Consensus        86 L~~~~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL  165 (260)
T 2ozb_B           86 LTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGL  165 (260)
T ss_dssp             SCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchH
Q 019554          209 SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGR  288 (339)
Q Consensus       209 ~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~  288 (339)
                      ++||||||||||+|||+|++|+||++++.+|||||||||++||++||++||||+|+||+||+||||||+|+++++|++|.
T Consensus       166 ~~Lak~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~  245 (260)
T 2ozb_B          166 TNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGY  245 (260)
T ss_dssp             HHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHH
T ss_pred             HHHhhCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 019554          289 SFREEIHKKIEKWQE  303 (339)
Q Consensus       289 ~~re~i~~ki~k~~e  303 (339)
                      +||++|++||++|+|
T Consensus       246 ~lr~~ie~rl~~~~e  260 (260)
T 2ozb_B          246 ELKDEIERKFDKWQE  260 (260)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999997
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 1e-100
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 2e-50
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  293 bits (752), Expect = e-100
 Identities = 136/249 (54%), Positives = 184/249 (73%), Gaps = 2/249 (0%)

Query: 57  EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116
           E  PEY++IVD N L+V+IENE+ IIH FIRDKY  +FPELESLV + +DY R VK++GN
Sbjct: 1   EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 60

Query: 117 EMDLT--LVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKV 174
            +D      +L+ +L +A IMVVSVTASTT G+ L E+ L++  +ACD AL L+A+K ++
Sbjct: 61  SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 120

Query: 175 LDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFST 234
            ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+
Sbjct: 121 YEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSS 180

Query: 235 ATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI 294
            +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI
Sbjct: 181 TSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 240

Query: 295 HKKIEKWQE 303
            +K +KWQE
Sbjct: 241 ERKFDKWQE 249
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-87  Score=621.30  Aligned_cols=247  Identities=55%  Similarity=0.895  Sum_probs=233.1

Q ss_pred             CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCc--ccccccCCHHHH
Q 019554           57 EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAII  134 (339)
Q Consensus        57 ~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~--~~L~~iL~~~~i  134 (339)
                      |++|||++|++||+++++||+||+.+|+||||||+||||||++||+||.+|+++|+.+||+.+++.  .+|.++|+++++
T Consensus         1 e~~pEy~lIvq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~~~~~~~~~~l~~~l~~~~~   80 (249)
T d2ozbb1           1 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATI   80 (249)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGTSCHHHH
T ss_pred             CCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCccccccchhHHHHhCCHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999988765  579999999999


Q ss_pred             HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCC
Q 019554          135 MVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKM  214 (339)
Q Consensus       135 m~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~Lakm  214 (339)
                      |+|+++|++|+|.+|+++|++.|..+|+++++|++.|+.|.+||++||..+|||||+|||+.+|||||++||||.+||+|
T Consensus        81 ~~i~~aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~aArLi~~AGgL~~LAk~  160 (249)
T d2ozbb1          81 MVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKM  160 (249)
T ss_dssp             HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS
T ss_pred             HHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchHHHHHHHHhCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHH
Q 019554          215 PACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI  294 (339)
Q Consensus       215 Pa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i  294 (339)
                      ||||||+|||+|++|+||++++.+||||||||||+||++||++||||+|+||+||+||||||+|+++++|++|.+||++|
T Consensus       161 PastIq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~G~~~r~~i  240 (249)
T d2ozbb1         161 PACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI  240 (249)
T ss_dssp             CHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHH
T ss_pred             ChHHHHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 019554          295 HKKIEKWQE  303 (339)
Q Consensus       295 ~~ki~k~~e  303 (339)
                      ++||+||+|
T Consensus       241 e~ki~k~~E  249 (249)
T d2ozbb1         241 ERKFDKWQE  249 (249)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999997
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure