Citrus Sinensis ID: 019567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Secondary Structure (PSIPRED)
ccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccHHHHEHHHHHHHHHEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccHHHHHccccHHHHEEHHHcccHHHHHHHHccHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHccccHcccccEccccccHHHHEEHHHccc
Coil and Loop (DISEMBL)
MSVAVVPLAakfgwsssflGIVQSSFLWGYIFSSVIGGalvdkyggkKVLAWGVALWSLStlltpwaatHSTASLLAVRAFFGLaegvampamstltsrwfpsheraSAIGICMGGFHLGNVVGLLLTPImlstigisgPFILFSSLGLLWLstwtskvtndpcnspfvskSELRLIQagksdsvkkrnppslrhllsklpSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAawfsavpwgtmavsGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Flexible Loop (DISEMBL)
MSVAVVPlaakfgwsssFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAgksdsvkkrnppslRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Low Complexity Region (SEG)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFsslgllwlstwtsKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Disordered region (IsUnstruct)
***AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS*F**************************HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTAL******
Disordered Region (DISOPRED)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK**********************RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQ**
Disordered Region (DISEMBL)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK********PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Disordered Region (DISPRO)
*SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQ**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQIAQDFSTALQIQQEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	339	2.2.26 [Sep-21-2011]
Q7XJR2	512	Probable anion transporte	yes	no	0.955	0.632	0.782	1e-148
Q53WP9	535	Probable anion transporte	yes	no	0.985	0.624	0.675	1e-131
Q66GI9	533	Probable anion transporte	no	no	0.985	0.626	0.568	1e-106
Q8W0H5	519	Probable anion transporte	no	no	0.985	0.643	0.539	1e-103
Q9SDI4	529	Probable anion transporte	no	no	0.952	0.610	0.422	8e-72
Q652N5	591	Probable anion transporte	no	no	0.952	0.546	0.410	4e-71
Q8GX78	541	Probable anion transporte	no	no	0.943	0.591	0.409	5e-70
O82390	512	Sodium-dependent phosphat	no	no	0.979	0.648	0.404	2e-69
Q3E9A0	517	Probable anion transporte	no	no	0.952	0.624	0.347	6e-45
Q9MZD1	495	Sialin OS=Ovis aries GN=S	N/A	no	0.952	0.652	0.291	2e-38

>sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2

 Score =  523 bits (1348), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 294/327 (89%), Gaps = 3/327 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct: 179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP+MLS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query: 181 K---SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
           P+ AAV +TIALSLSSFSQAG+LLN+Q
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQ 445

Inorganic phosphate and probable anion transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/336 (67%), Positives = 278/336 (82%), Gaps = 2/336 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVP AA++GWSSSFLGIVQSSFLWGY+FSS++GGAL D+YGGKKV+A   ALWSL+
Sbjct: 143 MSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLA 202

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA+ ST  LLA+RA FGLAEGVA P MST   +WFP+HERA+A+GI MGGFHLG
Sbjct: 203 TFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLG 262

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+  L TPI++S IG++G F  F+SLG LWLS W   V +DP +S  +SKSEL+LI AG
Sbjct: 263 NVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAG 322

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           +S S ++    PSLR +LSK+  W +I+AN+ NNWGYFVLLSWMP+YF TV+NVNLKQAA
Sbjct: 323 RSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAA 382

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PW  MA+SGY+AG ++D LIK+G+S+ LVRKIMQSIGFIGPGVSLLCL +A++P+
Sbjct: 383 WFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPS 442

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           VAAVL+TIALSLSSFSQAGY  N+Q IA  ++ +L 
Sbjct: 443 VAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLH 478

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 248/341 (72%), Gaps = 7/341 (2%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPL+   GWS SF GIVQSSFLWGY+ S + GG LVD+YGGK V+AWGVALWSL+
Sbjct: 132 MSVAIVPLSLSRGWSKSFSGIVQSSFLWGYLISPIAGGTLVDRYGGKVVMAWGVALWSLA 191

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA  S  +LLA RA  G+AEGVA+P M+ + +RWFP  ER+ A+GI M GF LG
Sbjct: 192 TFLTPWAADSSLWALLAARAMVGVAEGVALPCMNNMVARWFPPTERSRAVGIAMAGFQLG 251

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGL+L+PI++S  GI GPF++F   G LWL  W S  ++ P   P ++KSEL  I+  
Sbjct: 252 NVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLVWLSATSSAPDRHPQITKSELEYIKQK 311

Query: 181 KSDSVKKRNP------PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
           K  S  +         P    LLSK+P+W VI+AN  ++WG+FV+LSWMPIYFN+V++VN
Sbjct: 312 KQISTMENKRISTSGIPPFGRLLSKMPTWAVIVANSMHSWGFFVILSWMPIYFNSVYHVN 371

Query: 235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY 294
           LKQAAWFSAVPW  MA +GY+AG  SD LI+ G S+TL RKIMQSIGFIGPG++L+ L  
Sbjct: 372 LKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGTSITLTRKIMQSIGFIGPGIALIGLTT 431

Query: 295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           AK P VA+  +++A+ L SFS  G+L+N+Q IA ++S  L 
Sbjct: 432 AKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAPEYSGVLH 472

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/341 (53%), Positives = 245/341 (71%), Gaps = 7/341 (2%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPL+  +GW+ SF G+VQSSFLWGY+ S +IGGALVD YGGK+V+A+GVALWSL+
Sbjct: 118 MSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGVALWSLA 177

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T L+PWAA  S    L+ R   G+AEGVA+P+M+ +  RWFP  ER+SA+GI M GF LG
Sbjct: 178 TFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIAMAGFQLG 237

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           N +GLLL+PI++S  GI GPF++F   G LW+  W S ++  P  +  +S  EL  I  G
Sbjct: 238 NTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLVWISAISGTPGENAQISAHELDYITRG 297

Query: 181 ------KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
                 +S   + R  P    LLSK P+W +I AN  ++WGYFV+LSWMP+YF T+++VN
Sbjct: 298 QKLVKTQSGGERLRKVPPFSKLLSKWPTWALISANAMHSWGYFVILSWMPVYFKTIYHVN 357

Query: 235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY 294
           L++AAWFSA+PW  MAV GY+AG  SD LI+ G S+TL RKIMQ+IGF+GPGV+LL LN 
Sbjct: 358 LREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGTSITLTRKIMQTIGFVGPGVALLGLNA 417

Query: 295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           AKSP +A+  +TIA+ L SF  +G+L+N+Q IA  ++  L 
Sbjct: 418 AKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLH 458

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1

 Score =  270 bits (691), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 137/324 (42%), Positives = 200/324 (61%), Gaps = 1/324 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++A+FGW+   +G++QSSF WGY+ + + GG   D  GGK VL +GV  WS++
Sbjct: 140 MSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSIA 199

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTP+AA      LL  RAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 200 TALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLG 259

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P+++   G    F  F SLG+ W STW SK  + P   P +S  E +LI + 
Sbjct: 260 SVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTWASKAYSSPLEDPGISAEEKKLITSQ 319

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +     +  P    +LSK P W +I+++  +NWG F+LL+WMP Y+N V   NL ++  
Sbjct: 320 TTGGEPVKEIP-WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 378

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
           F  +PW TMAVS    G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++  SPA+
Sbjct: 379 FCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKIMQSIGFLGPAFFLTQLSHIDSPAM 438

Query: 301 AAVLITIALSLSSFSQAGYLLNIQ 324
           A + +  +    +FSQ+G   N Q
Sbjct: 439 AVLCMACSQGTDAFSQSGLYSNHQ 462

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1

 Score =  268 bits (685), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 133/324 (41%), Positives = 206/324 (63%), Gaps = 1/324 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++++FGWS + +G++QSSF WGY+ + ++GG   D++GGK VL +GV  WS++
Sbjct: 202 MSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIA 261

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA      LL +RAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 262 TVLTPLAAKIGLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLG 321

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P+++S  G    F  F SLG +W + W  K  + P   P +SK+E R I  G
Sbjct: 322 SVTGLAFSPLLISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILGG 381

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +      + P  + +LSK P W +I+++  +NWG F+LL+WMP Y+N V   NL ++  
Sbjct: 382 STLKEPVTSIP-WKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 440

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              +PW TMA+   + G  +D+L+  G S+T VRKIMQSIGF+GP + L  L+  ++PA+
Sbjct: 441 LCVLPWLTMAIFANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAM 500

Query: 301 AAVLITIALSLSSFSQAGYLLNIQ 324
           A + +  +    +FSQ+G   N Q
Sbjct: 501 AVLCMACSQGSDAFSQSGLYSNHQ 524

Probable anion transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1

 Score =  265 bits (676), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 134/327 (40%), Positives = 205/327 (62%), Gaps = 7/327 (2%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++ ++ WSS+ +G++QSSF WGY+ + ++GG   DK+GGK VL +GV  WS +
Sbjct: 152 MSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFA 211

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T++TP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 212 TIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLG 271

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P++++  G    F  F SLG +W   W     + P + P +S+ E ++I  G
Sbjct: 272 SVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGG 331

Query: 181 KSDSVKKRNPPSL---RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
                K R P ++   + +LSK P W +II++  +NWG F+LL+WMP Y+N V   NL +
Sbjct: 332 S----KPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 387

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           +     +PW TMAV   + G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++ K+
Sbjct: 388 SGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKT 447

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
           PA+A + +  +    +FSQ+G   N Q
Sbjct: 448 PAMAVLCMACSQGSDAFSQSGLYSNHQ 474

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/334 (40%), Positives = 203/334 (60%), Gaps = 2/334 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MS+A++P++A++GW+ + +G++QSSF WGY+ + + GG   D  GGK+VL +GV  WS++
Sbjct: 123 MSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIA 182

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct: 183 TILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLG 242

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V GL  +P ++   G    F  F SLG +WL+ W +K  + P   P +   E +LI   
Sbjct: 243 SVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADN 302

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +     ++ P  R +LSK P W +I  +  +NWG F+LL+WMP Y++ V   NL ++  
Sbjct: 303 CASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGL 361

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
            S  PW TMA+S    G  +D+L+  G+S+T VRKIMQ+IGF+GP   L  L +  SP +
Sbjct: 362 LSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTM 421

Query: 301 AAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTAL 333
           A + +  +    +FSQ+G   N Q IA  +S  L
Sbjct: 422 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVL 455

Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 181/345 (52%), Gaps = 22/345 (6%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +S+A++P++ +FGWSSS  G+VQSSF WGY  S + GG L   +GG+KVL  GV  WS +
Sbjct: 119 LSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T L P  A      L+  R   G+ EGV+  A + L +R  P  ER+ A+G   GG  LG
Sbjct: 179 TALVPLLAGF-MPGLIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLG 237

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           +V+GLLL P ++ T      F LF  LG+ W       V     N   VS     +  + 
Sbjct: 238 SVMGLLLAPPIIETFNWESVFYLFGLLGVGWF------VGFQFLNEEEVSYKGNEISTSH 291

Query: 181 KSDSVKKRNPPSLRHLLSKLP---------SWTVIIANITNNWGYFVLLSWMPIYFNTVF 231
           KS++  K     L   L ++P          W +I  +   +WG++  LSW+P YF+   
Sbjct: 292 KSENATKEE---LGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEAL 348

Query: 232 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV--SL 289
           ++NL +AAW S +P     V   +A + +D LI  G   T VRKI Q+I F+ P +  +L
Sbjct: 349 SLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMTL 408

Query: 290 LCLNYAKSPAVAAVLITIALSLSSFSQAG-YLLNIQIAQDFSTAL 333
             ++    P     ++T  L+LSSF+ +G Y  +  I+ ++++ L
Sbjct: 409 SSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

Inorganic phosphate and probable anion transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MZD1|S17A5_SHEEP Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 169/326 (51%), Gaps = 3/326 (0%)

Query: 11  KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
           K+ W +   G +  SF +GYI + + GG +  + GGK +L +G+   ++ TL TP AA  
Sbjct: 100 KYRWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGIFATAIFTLFTPLAADF 159

Query: 71  STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
              +L+A+RA  GL EGV  PAM  + S W P  ER+  + I   G  LG VV L L+ +
Sbjct: 160 GVGALVALRALEGLGEGVTYPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query: 131 MLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
           +   +  +  F  F  +G++W   W   V++ P     ++  E   I +   + +  +  
Sbjct: 220 ICYYMNWTYVFYFFGIVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKS 279

Query: 191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                +L  LP W +++A+ + NW ++ LL+ +P Y   V   N+++  + SAVP+    
Sbjct: 280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCW 339

Query: 251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
           +   ++G+A+D+L  +  +S   VR++   IG IGP + L+   +     ++A   +TI+
Sbjct: 340 LCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTIS 399

Query: 309 LSLSSFSQAGYLLN-IQIAQDFSTAL 333
            +L  F  +G+ +N + IA  ++  L
Sbjct: 400 TTLGGFCSSGFSINHLDIAPSYAGIL 425

Primary solute translocator for anionic substances; particularly it is a free sialic acid transporter in the lysosomes (Probable). Receptor for CM101, a polysaccharide produced by group B Streptococcus with antipathoangiogenic properties.

Ovis aries (taxid: 9940)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
255573881	501	Sialin, putative [Ricinus communis] gi|2	0.955	0.646	0.843	1e-154
224140369	419	predicted protein [Populus trichocarpa]	0.955	0.773	0.84	1e-153
42569720	512	putative anion transporter 3 [Arabidopsi	0.955	0.632	0.782	1e-146
449439924	518	PREDICTED: probable anion transporter 3,	0.955	0.625	0.769	1e-143
297827359	517	hypothetical protein ARALYDRAFT_482813 [	0.955	0.626	0.782	1e-141
356520987	504	PREDICTED: probable anion transporter 3,	0.985	0.662	0.752	1e-140
147769688	507	hypothetical protein VITISV_018284 [Viti	0.985	0.658	0.718	1e-135
225440612	507	PREDICTED: probable anion transporter 3,	0.985	0.658	0.747	1e-135
297740248	405	unnamed protein product [Vitis vinifera]	0.985	0.824	0.747	1e-135
115464211	535	Os05g0451100 [Oryza sativa Japonica Grou	0.985	0.624	0.675	1e-129

>gi|255573881|ref|XP_002527859.1| Sialin, putative [Ricinus communis] gi|223532710|gb|EEF34490.1| Sialin, putative [Ricinus communis]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/325 (84%), Positives = 298/325 (91%), Gaps = 1/325 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLAAK+GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK+VLAWGV LWSL+
Sbjct: 110 MSVAVVPLAAKYGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKRVLAWGVGLWSLA 169

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HSTASLLAVRAFFGLAEGVA+P+MSTL SRWFP++ERASAIG+ M GFHLG
Sbjct: 170 TLLTPWAANHSTASLLAVRAFFGLAEGVALPSMSTLLSRWFPTNERASAIGLSMAGFHLG 229

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLLLTPIMLSTIGI+GPFILFSSLGLLW+S WT+ VT+DP +SPFVSKSELRLIQAG
Sbjct: 230 NVAGLLLTPIMLSTIGIAGPFILFSSLGLLWVSRWTNGVTSDPRDSPFVSKSELRLIQAG 289

Query: 181 KSD-SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+D S  K   P LR L SKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAA
Sbjct: 290 KTDSSTNKGQLPPLRLLFSKLPTWAIIFANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAA 349

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPWGTMAVSGY+AG ASD LIKAGYSLTLVRK+MQSIGFIGPGVSLLCLNYAK+P 
Sbjct: 350 WFSAVPWGTMAVSGYIAGAASDFLIKAGYSLTLVRKVMQSIGFIGPGVSLLCLNYAKTPV 409

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ 324
            AA+ IT ALSLSSFSQAG+LLN+Q
Sbjct: 410 TAAIFITAALSLSSFSQAGFLLNMQ 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140369|ref|XP_002323555.1| predicted protein [Populus trichocarpa] gi|222868185|gb|EEF05316.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/325 (84%), Positives = 297/325 (91%), Gaps = 1/325 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSV VVPLA KFGWSSSFLGIVQSSFLWGYIFSSVIGG LVD+YGGK+V+AWGVALWSL+
Sbjct: 28  MSVTVVPLATKFGWSSSFLGIVQSSFLWGYIFSSVIGGVLVDRYGGKRVMAWGVALWSLA 87

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LLAVRAFFGLAEGVA+P+MSTL+SRWFP+HERASA+GI M GFHLG
Sbjct: 88  TLLTPWAANHSTVALLAVRAFFGLAEGVALPSMSTLSSRWFPTHERASAVGISMAGFHLG 147

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLST+GISGPFILFSSLGLLWL+ W + VT+DP +SPFVSKSELRLIQAG
Sbjct: 148 NVIGLLLTPIMLSTVGISGPFILFSSLGLLWLTRWANGVTSDPRDSPFVSKSELRLIQAG 207

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+DS       P LR LLSK PSW +I ANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA
Sbjct: 208 KTDSPASDGQFPPLRLLLSKAPSWAIIFANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 267

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPWGTMAVSGY+AG  SDSLIKAGYSLT+VRKIMQSIGFIGPGVSLLCLNYAK+P 
Sbjct: 268 WFSAVPWGTMAVSGYVAGALSDSLIKAGYSLTIVRKIMQSIGFIGPGVSLLCLNYAKTPV 327

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ 324
            AA L+TIALSLSSFSQAG+LLN+Q
Sbjct: 328 TAAALMTIALSLSSFSQAGFLLNMQ 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569720|ref|NP_181341.2| putative anion transporter 3 [Arabidopsis thaliana] gi|187470894|sp|Q7XJR2.2|ANTR3_ARATH RecName: Full=Probable anion transporter 3, chloroplastic; AltName: Full=Phosphate transporter PHT4;2; Flags: Precursor gi|330254391|gb|AEC09485.1| putative anion transporter 3 [Arabidopsis thaliana]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 294/327 (89%), Gaps = 3/327 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct: 179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP+MLS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query: 181 K---SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
           P+ AAV +TIALSLSSFSQAG+LLN+Q
Sbjct: 419 PSCAAVFMTIALSLSSFSQAGFLLNMQ 445

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439924|ref|XP_004137735.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus] gi|449483449|ref|XP_004156595.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Cucumis sativus]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/325 (76%), Positives = 290/325 (89%), Gaps = 1/325 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAAK+GWSSSFLGIVQSSFLWGYIFSSV+GGALVD+YGGK+V+AWGVALWSL+
Sbjct: 127 MSVAIVPLAAKYGWSSSFLGIVQSSFLWGYIFSSVVGGALVDRYGGKRVMAWGVALWSLA 186

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTP AA HST SLLA+RAFFGLAEGVA+P+MSTL SRWFP HERASA+G+ M GFHLG
Sbjct: 187 TLLTPLAANHSTTSLLAIRAFFGLAEGVALPSMSTLLSRWFPGHERASAVGMSMAGFHLG 246

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLS+IG++GPF+LFSSLGL+WL++W   VTN+P +S  +S SELRLI+AG
Sbjct: 247 NVIGLLLTPIMLSSIGVTGPFLLFSSLGLVWLTSWIPGVTNNPRDSQNISTSELRLIEAG 306

Query: 181 KSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K DS +       L  LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQAA
Sbjct: 307 KVDSSRHNATHLPLSRLLSKLPTWAIIFANMTNNWGYFVLLSWMPVYFKTVFNVNLKQAA 366

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PWGTMAVSGY AG  SD+LIK+GY +TLVRKIMQSIGFIGPG+ LLCLN+A +P 
Sbjct: 367 WFSAIPWGTMAVSGYFAGTMSDALIKSGYPVTLVRKIMQSIGFIGPGLGLLCLNFATTPT 426

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ 324
           VAAVL+T+ALSLSSFSQAG+LLN+Q
Sbjct: 427 VAAVLMTVALSLSSFSQAGFLLNMQ 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827359|ref|XP_002881562.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata] gi|297327401|gb|EFH57821.1| hypothetical protein ARALYDRAFT_482813 [Arabidopsis lyrata subsp. lyrata]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/327 (78%), Positives = 295/327 (90%), Gaps = 3/327 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct: 124 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 183

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAA HST +LL VRAFFGLAEGVA+P+M+TL SRWFP+ ERASA+GI M GFH+G
Sbjct: 184 TLLTPWAAAHSTLALLCVRAFFGLAEGVALPSMTTLLSRWFPTDERASAVGISMAGFHMG 243

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NVVGLLLTP++LS+IGISGPFILF+SLGLLW+STW+S VTN+P +SPF+++SELRLIQAG
Sbjct: 244 NVVGLLLTPLLLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 303

Query: 181 K--SDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
           K    S     P PSLR LLSKLP+W +I+AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct: 304 KPVQPSTNSTKPNPSLRLLLSKLPTWAIILANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 363

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct: 364 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 423

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
           P+ AAV +TIALSLSSFSQAG+LLN+Q
Sbjct: 424 PSCAAVFMTIALSLSSFSQAGFLLNMQ 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520987|ref|XP_003529140.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Glycine max]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 253/336 (75%), Positives = 289/336 (86%), Gaps = 2/336 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAAK GWS+SFLGIVQSSFLWGYIFSSVIGGALVD+YGGK+VLA GV +WSL+
Sbjct: 113 MSVAIVPLAAKHGWSNSFLGIVQSSFLWGYIFSSVIGGALVDRYGGKRVLACGVFMWSLA 172

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T+LTP AA HST SLLA+RAFFGLAEGVA P+MSTL SRWFP++ERASA+G+ M GFHLG
Sbjct: 173 TILTPLAANHSTVSLLAIRAFFGLAEGVAFPSMSTLLSRWFPTNERASALGMSMAGFHLG 232

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+GLLLTPIMLST+GISGPFILFSSLGLLW+ TW  +VT+DP  S F+S+ E RLIQAG
Sbjct: 233 NVIGLLLTPIMLSTMGISGPFILFSSLGLLWVITWAYRVTDDPTESNFISRLEQRLIQAG 292

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K+ S KK N  P +R LLSKLPSW +I AN TNNWGYFVLLSWMP+YF +V+NVNLKQAA
Sbjct: 293 KTGSPKKSNKFPPIRLLLSKLPSWAIIFANATNNWGYFVLLSWMPVYFKSVYNVNLKQAA 352

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSAVPW TMA+SGY+AG ASD LI AGY    VRK MQ+IGFIGP V+LLCLNYA +PA
Sbjct: 353 WFSAVPWATMAMSGYLAGVASDFLINAGYPTIFVRKFMQTIGFIGPAVTLLCLNYANTPA 412

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           VAA L+TIALSLSSFSQAG++LNIQ IA  ++  L 
Sbjct: 413 VAATLMTIALSLSSFSQAGFMLNIQDIAPQYAGILH 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769688|emb|CAN65535.1| hypothetical protein VITISV_018284 [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/348 (71%), Positives = 287/348 (82%), Gaps = 14/348 (4%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAA+ GWSSSFLGIVQSSFLWGY+FSSVIGG LVD+YGGKKV+A GVALWSL+
Sbjct: 115 MSVAIVPLAAEHGWSSSFLGIVQSSFLWGYVFSSVIGGVLVDRYGGKKVMACGVALWSLA 174

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAATHST SLLAVRAFFGLAEGVA+PAMSTL SRWFP +ERASA+GI M GFHLG
Sbjct: 175 TLLTPWAATHSTLSLLAVRAFFGLAEGVALPAMSTLVSRWFPINERASAVGISMAGFHLG 234

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLL+TP ++S+IGISGPF+LFSSLGLLWL+ W    T+DP  S  +S+SELRLIQAG
Sbjct: 235 NVTGLLVTPXVISSIGISGPFVLFSSLGLLWLTMWGYGATSDPRESHLISQSELRLIQAG 294

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNT---------- 229
           K++S  +      LR LLSKLP+W +I ANITNNWGYFVLLSWMP+YF +          
Sbjct: 295 KTESSXRNGKFXPLRLLLSKLPTWAIIFANITNNWGYFVLLSWMPVYFKSVSDHFLGHXF 354

Query: 230 --VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV 287
             VF++NLKQAAWFSA PWG MA+SGY+AG  SD LIK GY LTLVRKIMQSIGFIGPGV
Sbjct: 355 LXVFDINLKQAAWFSAAPWGMMAISGYIAGVVSDYLIKVGYPLTLVRKIMQSIGFIGPGV 414

Query: 288 SLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           SLLCLN+AK+P  AA+ +T  LSLSSFSQAG+LLN+Q IA  ++  L 
Sbjct: 415 SLLCLNHAKTPVTAAMFLTAGLSLSSFSQAGFLLNMQDIAPQYAGFLH 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440612|ref|XP_002273820.1| PREDICTED: probable anion transporter 3, chloroplastic-like [Vitis vinifera]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/336 (74%), Positives = 288/336 (85%), Gaps = 2/336 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAA+ GWSSSFLGIVQSSFLWGY+FSSVIGG LVD+YGGKKV+A GVALWSL+
Sbjct: 115 MSVAIVPLAAEHGWSSSFLGIVQSSFLWGYVFSSVIGGVLVDRYGGKKVMACGVALWSLA 174

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAATHST SLLAVRAFFGLAEGVA+PAMSTL SRWFP +ERASA+GI M GFHLG
Sbjct: 175 TLLTPWAATHSTLSLLAVRAFFGLAEGVALPAMSTLVSRWFPINERASAVGISMAGFHLG 234

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLL+TPI++S+IGISGPF+LFSSLGLLWL+ W    T+DP  S  +S+SELRLIQAG
Sbjct: 235 NVTGLLVTPIVISSIGISGPFVLFSSLGLLWLTMWGYGATSDPRESHLISQSELRLIQAG 294

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K++S  +      LR LLSKLP+W +I ANITNNWGYFVLLSWMP+YF +VF++NLKQAA
Sbjct: 295 KTESSARNGKFLPLRLLLSKLPTWAIIFANITNNWGYFVLLSWMPVYFKSVFDINLKQAA 354

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA PWG MA+SGY+AG  SD LIK GY LTLVRKIMQSIGFIGPGVSLLCLN+AK+P 
Sbjct: 355 WFSAAPWGMMAISGYIAGVVSDYLIKVGYPLTLVRKIMQSIGFIGPGVSLLCLNHAKTPV 414

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
            AA+ +T  LSLSSFSQAG+LLN+Q IA  ++  L 
Sbjct: 415 TAAMFLTAGLSLSSFSQAGFLLNMQDIAPQYAGFLH 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740248|emb|CBI30430.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/336 (74%), Positives = 288/336 (85%), Gaps = 2/336 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVA+VPLAA+ GWSSSFLGIVQSSFLWGY+FSSVIGG LVD+YGGKKV+A GVALWSL+
Sbjct: 13  MSVAIVPLAAEHGWSSSFLGIVQSSFLWGYVFSSVIGGVLVDRYGGKKVMACGVALWSLA 72

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLLTPWAATHST SLLAVRAFFGLAEGVA+PAMSTL SRWFP +ERASA+GI M GFHLG
Sbjct: 73  TLLTPWAATHSTLSLLAVRAFFGLAEGVALPAMSTLVSRWFPINERASAVGISMAGFHLG 132

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV GLL+TPI++S+IGISGPF+LFSSLGLLWL+ W    T+DP  S  +S+SELRLIQAG
Sbjct: 133 NVTGLLVTPIVISSIGISGPFVLFSSLGLLWLTMWGYGATSDPRESHLISQSELRLIQAG 192

Query: 181 KSDSVKKRNP-PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           K++S  +      LR LLSKLP+W +I ANITNNWGYFVLLSWMP+YF +VF++NLKQAA
Sbjct: 193 KTESSARNGKFLPLRLLLSKLPTWAIIFANITNNWGYFVLLSWMPVYFKSVFDINLKQAA 252

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA PWG MA+SGY+AG  SD LIK GY LTLVRKIMQSIGFIGPGVSLLCLN+AK+P 
Sbjct: 253 WFSAAPWGMMAISGYIAGVVSDYLIKVGYPLTLVRKIMQSIGFIGPGVSLLCLNHAKTPV 312

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
            AA+ +T  LSLSSFSQAG+LLN+Q IA  ++  L 
Sbjct: 313 TAAMFLTAGLSLSSFSQAGFLLNMQDIAPQYAGFLH 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115464211|ref|NP_001055705.1| Os05g0451100 [Oryza sativa Japonica Group] gi|75270188|sp|Q53WP9.1|PHT42_ORYSJ RecName: Full=Probable anion transporter 2, chloroplastic; AltName: Full=Phosphate transporter 4;2; Flags: Precursor gi|55733842|gb|AAV59349.1| putative anion/sugar transporter [Oryza sativa Japonica Group] gi|113579256|dbj|BAF17619.1| Os05g0451100 [Oryza sativa Japonica Group]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/336 (67%), Positives = 278/336 (82%), Gaps = 2/336 (0%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           MSVAVVP AA++GWSSSFLGIVQSSFLWGY+FSS++GGAL D+YGGKKV+A   ALWSL+
Sbjct: 143 MSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLA 202

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           T LTPWAA+ ST  LLA+RA FGLAEGVA P MST   +WFP+HERA+A+GI MGGFHLG
Sbjct: 203 TFLTPWAASQSTIMLLAIRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLG 262

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
           NV+  L TPI++S IG++G F  F+SLG LWLS W   V +DP +S  +SKSEL+LI AG
Sbjct: 263 NVISFLATPIIMSHIGLAGTFAFFASLGYLWLSVWLFNVESDPLDSRTISKSELQLILAG 322

Query: 181 KSDS-VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA 239
           +S S ++    PSLR +LSK+  W +I+AN+ NNWGYFVLLSWMP+YF TV+NVNLKQAA
Sbjct: 323 RSASKIQGSKFPSLREILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAA 382

Query: 240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA 299
           WFSA+PW  MA+SGY+AG ++D LIK+G+S+ LVRKIMQSIGFIGPGVSLLCL +A++P+
Sbjct: 383 WFSAIPWAVMALSGYVAGASADFLIKSGFSVALVRKIMQSIGFIGPGVSLLCLRFAQTPS 442

Query: 300 VAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ 334
           VAAVL+TIALSLSSFSQAGY  N+Q IA  ++ +L 
Sbjct: 443 VAAVLMTIALSLSSFSQAGYFCNVQDIAPKYAGSLH 478

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	339
TAIR|locus:2065615	512	PHT4;2 "AT2G38060" [Arabidopsi	0.973	0.644	0.742	1.2e-131
TAIR|locus:2126066	541	ANTR2 "AT4G00370" [Arabidopsis	0.943	0.591	0.394	2.5e-65
TAIR|locus:2060694	512	PHT4;1 "AT2G29650" [Arabidopsi	0.979	0.648	0.386	2.3e-64
TAIR|locus:2149199	517	PHT4;5 "phosphate transporter	0.961	0.630	0.342	2.7e-45
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.952	0.667	0.306	8.7e-40
FB|FBgn0028513	481	CG9254 [Drosophila melanogaste	0.946	0.667	0.287	2.3e-39
UNIPROTKB|E2R8R4	495	SLC17A5 "Uncharacterized prote	0.952	0.652	0.288	4.8e-39
UNIPROTKB|F1RQG9	497	SLC17A5 "Uncharacterized prote	0.952	0.649	0.298	1.3e-38
MGI|MGI:1924105	495	Slc17a5 "solute carrier family	0.952	0.652	0.285	4.3e-38
UNIPROTKB|E1B7R3	495	SLC17A5 "Uncharacterized prote	0.952	0.652	0.285	1.1e-37

TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)]

 Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
 Identities = 248/334 (74%), Positives = 285/334 (85%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MSVAVVPLA K GWSSSFLG+VQSSFLWGYIFSSVIGGALVD+YGGK+VLAWGVALWSL+
Sbjct:   119 MSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGVALWSLA 178

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             TLLTPWAA HST +LL VRAFFGLAEGVAMP+M+TL SRWFP  ERASA+GI M GFH+G
Sbjct:   179 TLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISMAGFHMG 238

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             NVVGLLLTP+MLS+IGISGPFILF              VTN+P +SPF+++SELRLIQAG
Sbjct:   239 NVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSELRLIQAG 298

Query:   181 KS---DSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
             K     ++  +  PSLR LLSKLP+W +I AN+TNNWGYFVLLSWMP+YF TVFNVNLKQ
Sbjct:   299 KPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVFNVNLKQ 358

Query:   238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
             AAWFSA+PW TMA+SGY AG ASD LI+ G+S+T VRKIMQSIGF+GPG+SLLCLN+AKS
Sbjct:   359 AAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLCLNFAKS 418

Query:   298 PAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFS 330
             P+ AAV +TIALSLSSFSQAG+LLN+Q IA  ++
Sbjct:   419 PSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYA 452

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 129/327 (39%), Positives = 199/327 (60%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MS+A++P++ ++ WSS+ +G++QSSF WGY+ + ++GG   DK+GGK VL +GV  WS +
Sbjct:   152 MSIAILPMSQEYNWSSATVGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFA 211

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T++TP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct:   212 TIMTPIAARLGLPFLLVVRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLG 271

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V GL  +P++++  G    F  F                + P + P +S+ E ++I  G
Sbjct:   272 SVTGLAFSPMLITKFGWPSVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGG 331

Query:   181 KSDSVKKRNPPSL---RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
                  K R P ++   + +LSK P W +II++  +NWG F+LL+WMP Y+N V   NL +
Sbjct:   332 S----KPREPVTVIPWKLILSKPPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 387

Query:   238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
             +     +PW TMAV   + G  +D+L+  G S+T VRKIMQSIGF+GP   L  L++ K+
Sbjct:   388 SGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKT 447

Query:   298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
             PA+A + +  +    +FSQ+G   N Q
Sbjct:   448 PAMAVLCMACSQGSDAFSQSGLYSNHQ 474

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 129/334 (38%), Positives = 194/334 (58%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             MS+A++P++A++GW+ + +G++QSSF WGY+ + + GG   D  GGK+VL +GV  WS++
Sbjct:   123 MSIAILPMSAEYGWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIA 182

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T+LTP AA      LL VRAF G+ EGVAMPAM+ + S+W P  ER+ ++ +   G +LG
Sbjct:   183 TILTPVAAKLGLPYLLVVRAFMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLG 242

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V GL  +P ++   G    F  F             K  + P   P +   E +LI   
Sbjct:   243 SVTGLAFSPFLIHQFGWPSVFYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADN 302

Query:   181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
              +     ++ P  R +LSK P W +I  +  +NWG F+LL+WMP Y++ V   NL ++  
Sbjct:   303 CASKEPVKSIP-WRLILSKPPVWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGL 361

Query:   241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              S  PW TMA+S    G  +D+L+  G+S+T VRKIMQ+IGF+GP   L  L +  SP +
Sbjct:   362 LSVFPWMTMAISANAGGWIADTLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTM 421

Query:   301 AAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTAL 333
             A + +  +    +FSQ+G   N Q IA  +S  L
Sbjct:   422 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVL 455

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0008514 "organic anion transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0030504 "inorganic diphosphate transmembrane transporter activity" evidence=IGI

GO:0009416 "response to light stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 117/342 (34%), Positives = 178/342 (52%)

Query:     1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             +S+A++P++ +FGWSSS  G+VQSSF WGY  S + GG L   +GG+KVL  GV  WS +
Sbjct:   119 LSIAIIPMSHQFGWSSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFA 178

Query:    61 TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
             T L P  A      L+  R   G+ EGV+  A + L +R  P  ER+ A+G   GG  LG
Sbjct:   179 TALVPLLAGFMPG-LIFSRILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLG 237

Query:   121 NVVGLLLTPIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAG 180
             +V+GLLL P ++ T      F LF                    N   VS     +  + 
Sbjct:   238 SVMGLLLAPPIIETFNWESVFYLFGLLGVGWFVGFQF------LNEEEVSYKGNEISTSH 291

Query:   181 KSDSVKKRN-PPSLRHLLSKL----PS-WTVIIANITNNWGYFVLLSWMPIYFNTVFNVN 234
             KS++  K     SL+ +  K     P+ W +I  +   +WG++  LSW+P YF+   ++N
Sbjct:   292 KSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLN 351

Query:   235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV--SLLCL 292
             L +AAW S +P     V   +A + +D LI  G   T VRKI Q+I F+ P +  +L  +
Sbjct:   352 LTEAAWVSILPPLASIVVTSLASQFADYLITNGVDTTTVRKICQTIAFVAPAICMTLSSV 411

Query:   293 NYAKSPAVAAVLITIALSLSSFSQAG-YLLNIQIAQDFSTAL 333
             +    P     ++T  L+LSSF+ +G Y  +  I+ ++++ L
Sbjct:   412 DIGLPPWEIVGILTAGLALSSFALSGLYCTHQDISPEYASIL 453

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005315 "inorganic phosphate transmembrane transporter activity" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 100/326 (30%), Positives = 162/326 (49%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W +   G +  SF +GYI + + GG L  K GGK +L +G+   S+ TLLTP AA  
Sbjct:    89 KYSWDADTQGWILGSFFYGYIITQIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAADL 148

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                 L+AVRA  GL EGV  PAM ++ S W P  ER+  + I   G  LG VV L L+ +
Sbjct:   149 GVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGL 208

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +     F +F              V++ P     +S+ E   I +   D +  +  
Sbjct:   209 ICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYILSSLKDQLSTQKS 268

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                R +L  LP W +++A+ + NW ++ LL+ +P Y   +   + ++  + SA+P+    
Sbjct:   269 VPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYFGCW 328

Query:   251 VSGYMAGKASDSLI-KAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIA 308
             +   ++G+ +D L  K  +S   VRK    IG IGP V L+   +   +  +A   +TI+
Sbjct:   329 LCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFVTIS 388

Query:   309 LSLSSFSQAGYLLN-IQIAQDFSTAL 333
              +L  F  +GY +N + IA  ++  L
Sbjct:   389 TTLGGFCTSGYSINHLDIAPSYAGIL 414

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

FB|FBgn0028513 CG9254 [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 94/327 (28%), Positives = 168/327 (51%)

Query:    12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS 71
             + WS    G++ +SF  GYI + + GG L DK+GGK  L+ G+   ++ TLLTP    + 
Sbjct:    83 YDWSQEKQGLILASFYIGYIVTHLPGGILADKFGGKWTLSLGIFFTAIFTLLTPVCIVYG 142

Query:    72 TA-SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
              A +L+ +R   GL EG   PA+S L + W P++ER     + +GG  +G++ G +++  
Sbjct:   143 GADALIVLRVLMGLGEGTTFPALSVLLASWVPANERGMLGALVLGGGQMGSIAGNIISGY 202

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +LS++     F +F                + P   P++ K E R   A +     K  P
Sbjct:   203 VLSSMDWPWVFYVFAIIALVWFVVFTLVCFSSPFTHPYI-KPEERAFLAQEVPPPDKNKP 261

Query:   191 PS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTM 249
              +    +L+ +P W +I A I ++WG+++++S++P Y + V   ++K    +S++P+ TM
Sbjct:   262 KTPFFAILTSIPMWALISAQIGHDWGFYIMVSYLPKYMSDVLRFSIKSNGLYSSLPYVTM 321

Query:   250 AVSGYMAGKASDSLIKAG-YSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITI 307
              +   ++G  +D +IK    S T  RKIM  +   GP V ++  +YA  +  +   L TI
Sbjct:   322 WIMSLLSGCVADQMIKRNCMSTTNTRKIMTGVAAFGPAVFMVAASYAGCNRGMVVALFTI 381

Query:   308 ALSLSSFSQAGYLLN-IQIAQDFSTAL 333
              + L     AG  L  + ++ +++  L
Sbjct:   382 TMGLMGTYYAGMKLTPLDMSPNYAGTL 408

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 94/326 (28%), Positives = 163/326 (50%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             ++ W +   G +  SF +GYI + + GG +  K GGK +L +G+   ++ TL TP AA  
Sbjct:   100 RYQWDAETQGWILGSFFYGYIITQIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAADF 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                +L+ +RA  GL EGV  PAM  + S W P  ER+  + I   G  LG V+ L L+ I
Sbjct:   160 GVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGI 219

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +  +  F LF              V+  P     +S+ E   I +   + +  +  
Sbjct:   220 ICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILSSLKNQLSSQKS 279

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                  +L  LP W +++A+ + NW ++ LL+ +P Y   +   N+++    SA+P+    
Sbjct:   280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFGCW 339

Query:   251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
             +   ++G+A+D+L  K  +S   VR++   IG IGP V L+   +     ++A V +TI+
Sbjct:   340 LCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLTIS 399

Query:   309 LSLSSFSQAGYLLN-IQIAQDFSTAL 333
              +L  F  +G+ +N + IA  ++  L
Sbjct:   400 TTLGGFCSSGFSINHLDIAPSYAGIL 425

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RQG9 SLC17A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 98/328 (29%), Positives = 165/328 (50%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W++   G +  SF +GYI + + GG +  + GGK +L +G+   S+ TLLTP AA  
Sbjct:   100 KYQWNAETQGWILGSFFYGYIITQIPGGYIASRSGGKLLLGFGILGTSVFTLLTPLAADF 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMG--GFHLGNVVGLLLT 128
                +L+A+RA  GL EGV  PAM  + S W P  ER+  + I     G  LG VV L L+
Sbjct:   160 GVGALIALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAVLGAQLGTVVSLPLS 219

Query:   129 PIMLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKR 188
              I+   +  +  F LF              V++ P     +S  E   I +   + +  +
Sbjct:   220 GIICFYLNWTYVFYLFGLVGIIWFILWTWLVSDTPDTHRTISPYEKEYILSSLRNQLSSQ 279

Query:   189 NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT 248
                    +L  LP W +++A+ + NW ++ LL+ +P Y   V   N+++  + SAVP+  
Sbjct:   280 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYFG 339

Query:   249 MAVSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLIT 306
               V   ++G+A+D+L  K  +S   VR++   IG  GP V L+   +     ++A   +T
Sbjct:   340 CWVCMILSGQAADNLRAKWNFSTLCVRRVFSLIGMFGPAVFLVAAGFIGCDYSLAVAFLT 399

Query:   307 IALSLSSFSQAGYLLN-IQIAQDFSTAL 333
             I+ +L  F  +G+ ++ + IA  ++  L
Sbjct:   400 ISTTLGGFCSSGFSISHLDIAPSYAGIL 427

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924105 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 93/326 (28%), Positives = 162/326 (49%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W +   G +  SF +GYI + + GG +  + GGK +L  G+   S+ TL TP AA  
Sbjct:   100 KYKWDAETQGWILGSFFYGYIVTQIPGGYIASRVGGKLLLGLGILGTSVFTLFTPLAADL 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                +L+ +RA  GL EGV  PAM  + S W P  ER+  + I   G  LG V+ L L+ I
Sbjct:   160 GVVTLVVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSGI 219

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +  +  F LF              V++ P     +S  E   I +   + +  +  
Sbjct:   220 ICYYMNWTYVFYLFGIVGIVWFILWMWIVSDTPETHKTISHYEKEYIVSSLKNQLSSQKV 279

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                  +L  LP W +++A+ + NW ++ LL+ +P Y   +   N+++  + SA+P+    
Sbjct:   280 VPWGSILKSLPLWAIVVAHFSYNWSFYTLLTLLPTYMKEILRFNVQENGFLSALPYFGCW 339

Query:   251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
             +   + G+A+D L +K  +S   VR+I   +G +GP V L+   +     ++A   +TI+
Sbjct:   340 LCMILCGQAADYLRVKWNFSTISVRRIFSLVGMVGPAVFLVAAGFIGCDYSLAVAFLTIS 399

Query:   309 LSLSSFSQAGYLLN-IQIAQDFSTAL 333
              +L  F+ +G+ +N + IA  ++  L
Sbjct:   400 TTLGGFASSGFSINHLDIAPSYAGIL 425

GO:0005764 "lysosome" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISO

UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 93/326 (28%), Positives = 163/326 (50%)

Query:    11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH 70
             K+ W +   G +  SF +GYI + + GG +  + GGK +L +GV   ++ TL TP AA  
Sbjct:   100 KYQWDAETQGWILGSFFYGYIITQIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAADF 159

Query:    71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI 130
                +L+A+RA  GL EGV  PAM  + S W P  ER+  + I   G  LG VV L L+ +
Sbjct:   160 GFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSGV 219

Query:   131 MLSTIGISGPFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNP 190
             +   +  +  F  F              V++ P     ++  E   I +   + +  +  
Sbjct:   220 ICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILSSLKNQLSSQKS 279

Query:   191 PSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 250
                  +L  LP W +++A+ + NW ++ LL+ +P Y   V   N+++  + SAVP+    
Sbjct:   280 VPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLGCW 339

Query:   251 VSGYMAGKASDSL-IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP-AVAAVLITIA 308
             +   ++G+A+D+L  +  +S   VR++   IG IGP + L+   +     ++A   +TI+
Sbjct:   340 LCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLTIS 399

Query:   309 LSLSSFSQAGYLLN-IQIAQDFSTAL 333
              +L  F  +G+ +N + IA  ++  L
Sbjct:   400 TTLGGFCSSGFSINHLDIAPSYAGIL 425

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q53WP9	PHT42_ORYSJ	No assigned EC number	0.6755	0.9852	0.6242	yes	no
Q7XJR2	ANTR3_ARATH	No assigned EC number	0.7828	0.9557	0.6328	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.3501.1 hypothetical protein (413 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	339
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-42
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	3e-32
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-24
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-22
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-15
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	4e-13
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-10
TIGR00886	366	TIGR00886, 2A0108, nitrite extrusion protein (nitr	4e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	7e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-09
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	1e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-07
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-07
COG2223	417	COG2223, NarK, Nitrate/nitrite transporter [Inorga	5e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-07
TIGR02332	412	TIGR02332, HpaX, 4-hydroxyphenylacetate permease	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-05
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-05
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	6e-05
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-04
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	1e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-04
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-04
TIGR00712	438	TIGR00712, glpT, glycerol-3-phosphate transporter	0.002
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.002
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.003
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	0.004
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	0.004

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  152 bits (387), Expect = 2e-42
 Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 6/317 (1%)

Query: 12  FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS 71
           F WS +  G++ SS  +G I   +  G L  KY  K  +  G+ L S+ +++ PWAA   
Sbjct: 71  FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG 130

Query: 72  TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM 131
            A ++  R   GLA+G   PA   +  +W P  ER+  +G+   GF LG  + L ++  +
Sbjct: 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL 190

Query: 132 L-STIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG--KSDSVKKR 188
             S  G    F +F  +G  W   W     +DP   P +SK E + I +         ++
Sbjct: 191 CESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQ 250

Query: 189 NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT 248
           + P ++ +   LP W +  A   + W Y +L +++P + + V  V+ K+    S++P+  
Sbjct: 251 SLP-IKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309

Query: 249 MAVSGYMAGKASDSLIKAGY-SLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLI-T 306
             +    AG  +D L  +   SLT  RKI   IG +GPG+    L Y  +     ++I T
Sbjct: 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILT 369

Query: 307 IALSLSSFSQAGYLLNI 323
           +A ++SS   AG L+N 
Sbjct: 370 LANAVSSGPLAGVLINS 386

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score =  123 bits (312), Expect = 3e-32
 Identities = 82/314 (26%), Positives = 133/314 (42%), Gaps = 10/314 (3%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           S A   L    G S++  G V S+F WGY+     GG L+D++G +K LA  + +W + T
Sbjct: 14  SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFT 73

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
            L   A   +  SL  +R   G AE    P +  + + WFP+ ERA+A+ I      LG 
Sbjct: 74  GLQ--AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG 131

Query: 122 VVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI--QA 179
           ++G  L   +L        FI+   LG++W   W  K   DP         E + I    
Sbjct: 132 IIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL-KFIPDPPQKAKWLTEEEKYIVVGG 190

Query: 180 GKSDSVKKRNPPSLRH----LLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL 235
             ++   K      ++    LL     W + +     N G    L+W P Y      +++
Sbjct: 191 LLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSI 250

Query: 236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA 295
            +A + +++P     +   + G+ SD L++ G SL   RK    I  +   + +   NY 
Sbjct: 251 LEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATNYV 309

Query: 296 KSPAVAAVLITIAL 309
             P  A  L+ +  
Sbjct: 310 NIPYAALALVALGF 323

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score =  100 bits (250), Expect = 5e-24
 Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 20/324 (6%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
                + LA   G S + +G++ ++F  GY  +  + G L D++G ++VL  G+ L++L 
Sbjct: 16  GPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALG 75

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
            LL       S   LL +R   GL  G   PA + L + WFP  ER  A+G+   GF LG
Sbjct: 76  LLL--LLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLG 133

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
             +G LL  ++ S  G    F++ + L LL        +   P  S     +E       
Sbjct: 134 AALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLV 193

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
            +  +  R+P              +++A +   + +F LL+++P+Y   V  ++   A  
Sbjct: 194 PAWKLLLRDPVLW-----------LLLALLLFGFAFFALLTYLPLY-QEVLGLSALLAGL 241

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
              +     A+   + G+ SD L +        R ++  +  I   + L  L+  +S   
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGR------RRRLLLALLLLILAALGLALLSLTESSLW 295

Query: 301 AAVLITIALSLSSFSQAGYLLNIQ 324
             V + +    +          + 
Sbjct: 296 LLVALLLLGFGAGLVFPALNALVS 319

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 94.7 bits (236), Expect = 5e-22
 Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 50/317 (15%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +S A+  LA   G S+S  G++ S+F  GY   S++ G L D++G ++VL  G+ L++L 
Sbjct: 18  LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALG 77

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           +LL  +A   S   LL  R   GL  G   PA + L + WFP  ER  A+G+   GF LG
Sbjct: 78  SLLLAFA--SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLG 135

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAG 180
            ++G LL  ++  ++G    F++ + LGLL                              
Sbjct: 136 ALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL------------------------- 170

Query: 181 KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW 240
                          L        + +A    ++GY+ LL+++P+Y   V  ++  +A  
Sbjct: 171 ---------------LFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL 215

Query: 241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV 300
             ++      +   + G  SD L +        R+++  IG +   + LL L  A S A+
Sbjct: 216 LLSLFGLGGILGALLGGLLSDRLGR--------RRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 301 AAVLITIALSLSSFSQA 317
             V + +      F+  
Sbjct: 268 LLVALLLLGFGLGFAFP 284

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 2/143 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           M  A   ++A++G     LG + S+ L G  F ++  G L D+ G ++VL W + L+S+ 
Sbjct: 36  MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVF 95

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TLL   A   +   LL +R   GL  G  MP ++ L S + P   R +A+G+   G+ +G
Sbjct: 96  TLLC--ALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153

Query: 121 NVVGLLLTPIMLSTIGISGPFIL 143
             VG  L   ++   G    F +
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYV 176

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 58/274 (21%), Positives = 111/274 (40%), Gaps = 15/274 (5%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           ++A+  L  + G S + LG++ SSF   Y  S  + G++ D+   +  L  G+ L ++  
Sbjct: 15  ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVN 74

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           L   ++   S   + A+ A  G+ +G+  P      ++WF   ER + +          N
Sbjct: 75  LFFGFST--SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH---N 129

Query: 122 VVGLLLTPIMLSTIGISGP----FILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLI 177
           V G LL P++L  I         FI+   + ++        + + P  S  +  +E    
Sbjct: 130 VGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPN 188

Query: 178 QAGKSDSVKKRNPPS-----LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN 232
           +    D+ KK    +     L+++L     W + +  +        +L W P+Y      
Sbjct: 189 EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKG 248

Query: 233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 266
            + ++A+W   +      V   +AG  SD L   
Sbjct: 249 FSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG 282

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
             VA   +A +FG   + +G   S+ + G +  +++GG L D+ G K++L   VAL+ L 
Sbjct: 34  AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLF 93

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           +L T  A      SLL  R   G+  G A+P +  LTS       R +A+ +   G   G
Sbjct: 94  SLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151

Query: 121 NVV 123
             +
Sbjct: 152 GAL 154

Length = 406

>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator)

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 69/340 (20%), Positives = 125/340 (36%), Gaps = 35/340 (10%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
            +AV  +    G S++ LG + +  +       +I G LVDK+G +      + L ++  
Sbjct: 22  PLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           L     A  S + LL +R F G+A G     M    S +FP   + +A+G+  G  ++G 
Sbjct: 82  LWAGL-AVQSYSVLLLLRLFIGIAGGSFASCM-PWISFFFPKKIQGTALGLAAGWGNMGG 139

Query: 122 -VVGLLLTPIMLSTIGISG--------------PFILFSSLGLLWLSTWTSKVTNDPCNS 166
            V   ++ PI+ S I  +G              P  +     LL            P   
Sbjct: 140 GVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATG 199

Query: 167 PFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM-PI 225
               K     +  G      K      R   + + +    +      +G F+ +S +  +
Sbjct: 200 KLSFKGARWSVGTGALGDQLKV----FRDRHTWILALLYSV-----TFGSFLGVSSIFAM 250

Query: 226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP 285
           +F   F ++   A  ++++     +++  + G  SD L  A   L     +      +  
Sbjct: 251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL 310

Query: 286 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQI 325
           G+         SP   AV I + ++L  FS AG      +
Sbjct: 311 GLV--------SPLSLAVFIVLFVALFFFSGAGNGSTFAL 342

[Transport and binding proteins, Anions]. Length = 366

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 7   PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW 66
           P+AA  G S    G + +++  G    + +   L  +   +++L   +AL+ +S LL+  
Sbjct: 38  PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS-- 95

Query: 67  AATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLL 126
           A   S A LL  RA  GLA GV     + L +R  P  +R  A+ +   G  L  V+G+ 
Sbjct: 96  ALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155

Query: 127 LTPIMLSTIGISGPFILFSSLGLL 150
           L   +    G    F+  + L LL
Sbjct: 156 LGTFLGQLFGWRATFLAIAVLALL 179

Length = 394

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 20  GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR 79
           G++ + +  G +  S + G L D++G K VL  G+ ++ LST +   A + +   L+  R
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIAR 58

Query: 80  AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG 139
              G     A+ A + L +  +P  ER  A+G+   G  LG ++G  L  ++   +G   
Sbjct: 59  FLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Query: 140 PFILFSSLGLL 150
           PF+  + L L 
Sbjct: 119 PFLFLAILALA 129

Length = 141

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 6   VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP 65
            PL   FG   + + I  +  L G   S  +GG L DK+G + V   G  L+ L      
Sbjct: 27  PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY- 85

Query: 66  WAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL 125
            A   S A+L           G+A         +WFP  +R  A GI +GG+ LG+ +  
Sbjct: 86  -AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILS 143

Query: 126 LLTPIMLSTIGISGPFILFSSLGLLWLS 153
            L   +++  G+   FI    + LL + 
Sbjct: 144 PLITSVINLEGVPAAFIYMGIIFLLVIV 171

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 3/153 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKK-VLAWGVALWSL 59
           ++   + L    G S++  G++ S F  G I  +++GG L D+ G ++ +L  G+ L +L
Sbjct: 195 LTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL 254

Query: 60  STLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL 119
             LL       S A LL      G   G A PA+ TL S   P   R +A G+      L
Sbjct: 255 GLLLLAL--APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSL 312

Query: 120 GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL 152
           G  +G LL  ++L T G  G F++ ++L LL  
Sbjct: 313 GGALGPLLAGLLLDTGGYGGVFLILAALALLAA 345

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 37/330 (11%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           ++A+  L    G S + LGI+ S+F   Y  S  + G L D+   +  +A+G+ L ++  
Sbjct: 49  NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN 108

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           +L  +  + S      +    G  +G+  P  +   + WF   ER +   I     H  N
Sbjct: 109 IL--FGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSI-WNTSH--N 163

Query: 122 VVGLLLTPIML-----STIGISGPFILFSSLGLL--WLSTWTSKVTNDPCNSPFVSK--- 171
           + G L   + L        G    F     + ++   +  +  +        P + +   
Sbjct: 164 IGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG 223

Query: 172 ---SELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFV---LLSWMPI 225
                    +  +  +  +     ++++L     W + +AN+   + Y V   +  W P+
Sbjct: 224 DPLEIYEEEKENEGLTAWQI---FVKYVLKNKLIWLLALANV---FVYVVRYGINDWGPL 277

Query: 226 YFNTVFNVNLKQAAW-FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG 284
           Y + V   +L +A W  S      +     +AG  SD L K        R  M  I  + 
Sbjct: 278 YLSEVKGFSLVKANWAISLFEVAGLP-GTLLAGWLSDKLFKGR------RGPMALIFMLL 330

Query: 285 PGVSLLCLNYAKSPAVAAVLITIALSLSSF 314
              SL+   Y  +P  + +L  I L +  F
Sbjct: 331 ITASLVL--YWLAPNGSYLLDAILLFIIGF 358

Length = 448

>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 59/290 (20%), Positives = 106/290 (36%), Gaps = 39/290 (13%)

Query: 35  VIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVRAFFGLAEGVAMPAM 93
           +  G L D++GG+K     + L  +  L   +A T+ ST  LL +    GLA       M
Sbjct: 67  LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM 126

Query: 94  STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---------ISGPFILF 144
               S +FP  ++  A+GI   G +LG  V  L+ P++    G         I    +  
Sbjct: 127 -PNASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184

Query: 145 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWT 204
           +++ L WL                         +A     +  +      +  + L S  
Sbjct: 185 AAV-LAWLGMNDVPEH-----------------RASVKPQLPAQLKAVFSNKDTWLLSLL 226

Query: 205 VIIANITNNWGYFVLLS-WMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL 263
                    +G FV  S ++P+Y  T F ++   A   + +     A++  + G  SD +
Sbjct: 227 YFA-----TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI 281

Query: 264 IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSS 313
              G  +TL   +  ++      + L          V  V + +AL + +
Sbjct: 282 --GGRRVTLAVFVGMALAAALLSLFLT-GFGHGGSFVVFVAVFLALFVFA 328

Length = 417

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 15  SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS 74
           S+   G++ S F  G +  S+  G L D++G KK L  G  L+ +  LL  +A   S   
Sbjct: 44  STVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYM 103

Query: 75  LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM--- 131
           L+  R   GL  G     +    S   P   R    G     + LG   G+L+  I+   
Sbjct: 104 LIVGRVIVGLGVGGISVLVPMYISEIAPKKLR----GALGSLYQLGITFGILVAAIIGLG 159

Query: 132 LSTIGISGPFILFSSLGLLW 151
           L+    S  + +   L  + 
Sbjct: 160 LNKYSNSDGWRIPLGLQFVP 179

Length = 449

>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)

Query: 4   AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL 63
           A + +    G S++  G+  + F   Y+   +    ++   G ++ +A  + LW +++  
Sbjct: 30  AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTA 89

Query: 64  TPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVV 123
           T +A      SL  +R   G+AE   +P +    + WFP++ RA A  + M    +   +
Sbjct: 90  TMFAT--GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL 147

Query: 124 GLLLTPIMLSTIGI 137
           GL+L+  +L+  G+
Sbjct: 148 GLILSGYILALDGL 161

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PMID:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. Length = 412

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 12  FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-TH 70
            G S+   G++            ++ G L D+ G ++ L   + L  L+ L     + T 
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTE 291

Query: 71  STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVG 124
           S+  LL      G   G+  PA++ L S   P  ER +A G+      LG  +G
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
           +++ +  +A +FG ++     + S+ L    F +++ G   D+YG +  +   + L+S  
Sbjct: 31  VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG 90

Query: 61  TLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG 120
           TL   +A  + T  +   R   G+  G    + +      +P H R  A G+ + G+ +G
Sbjct: 91  TLACGFAPGYIT--MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148

Query: 121 NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW 155
            VV   +  +++   G     + F S+  +  + W
Sbjct: 149 AVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW 183

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
           V P+ A  GW  + + +  + F+    +   I G  VDKYG + V+ +G  +  L  +L 
Sbjct: 26  VNPIDATHGWGRAAIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLN 85

Query: 65  PWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVG 124
            +A +       AV A  G A  V    +     +WFP  +R  A G+   GF  G  + 
Sbjct: 86  AYADSLPALYAAAVVAGIG-AGAVYGTCVGN-ALKWFPD-KRGLAAGLTAAGFGAGAALT 142

Query: 125 LLLTPIMLSTIGISGPFILF 144
           ++    M+   G    F+ F
Sbjct: 143 VVPIAAMIKVSGYQAAFMYF 162

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 31  IFSSVIGGALVDKYGGKKVLAWG-----VALWSLSTL-------LTPWAATHSTASLLAV 78
              + +   LVD++G + +L  G     + L+ L  L        +  +   +   +L  
Sbjct: 333 FAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLF 392

Query: 79  RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGIS 138
            AFF +  G   P    + S  FP   R   I I +    L N +   L P ML +IG+ 
Sbjct: 393 IAFFAMGWG---PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449

Query: 139 GPFILFSSLGLL 150
           G FI F  L +L
Sbjct: 450 GVFIFFGGLNVL 461

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%)

Query: 13  GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHST 72
           G    F  ++  +   G +   ++   LV K+G KK+   G+ L ++  LL  +    S 
Sbjct: 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327

Query: 73  ASLLAVRAFFGLAEGVAMPAMSTLTS------RWFPSHERASAI--GICMGGFHLGNVVG 124
             ++      G+  G+A P    + +       W  +  R   I          LG  + 
Sbjct: 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK-TGVRREGIVYSGMTFFRKLGLALA 386

Query: 125 LLLTPIMLSTIG 136
             +   +L  IG
Sbjct: 387 GFIPGWILGAIG 398

Length = 467

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 15  SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS 74
           SSS  G+V S FL G    ++  G L D++G KK L     L+ +  +L   AA   +  
Sbjct: 69  SSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVE 128

Query: 75  LLAV-RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT 128
           +L V R   G+  G+A   +    S   P   R    G     + L    G+L+ 
Sbjct: 129 MLIVGRVLLGIGVGIASALVPMYLSEIAPKALR----GALTSLYQLAITFGILVA 179

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 31  IFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT----PWAATHSTASLLAVRAFFGLAE 86
              + I   LVD++G + +L  G A  ++  L+        A    A ++A+        
Sbjct: 300 FVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIA 359

Query: 87  GVAM---PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFIL 143
             A+   P    + S  FP   R  A+ I      L N +   L PI+   IG    F++
Sbjct: 360 FFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV-FLV 418

Query: 144 FSSLGLL 150
           F+ L +L
Sbjct: 419 FAGLLVL 425

Length = 449

>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 74/340 (21%), Positives = 129/340 (37%), Gaps = 63/340 (18%)

Query: 6   VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL-- 63
           +P   + G+S   LG   S+    Y FS  I G++ D+   +  L  G+ L +   LL  
Sbjct: 50  MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109

Query: 64  -TPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
             PW AT S A +  +    G  +G+  P        W+   ER + + I     ++G  
Sbjct: 110 FVPW-ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG- 167

Query: 123 VGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS------------ 170
                        GI    +L   LG+ W + W + +      +  V+            
Sbjct: 168 -------------GIPPLLVL---LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQ 211

Query: 171 KSELRLIQAGKSDSVKKRNPPSLRHLLSK-------LPS---WTVIIANITNNWGYFVLL 220
              L  I+  ++D     N  + + L +K       LP+   W + IAN+      + +L
Sbjct: 212 SCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVL 271

Query: 221 SWMPIYFNTVFNVNLKQAAW------FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR 274
            W P Y   V +  L +++W      ++ +P GT+     + G  SD + K     T V 
Sbjct: 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIP-GTL-----LCGWMSDKVFKGNRGATGV- 324

Query: 275 KIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF 314
                  F    V++  + Y  +PA   ++  I + +  F
Sbjct: 325 -------FFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF 357

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar [Transport and binding proteins, Other]. Length = 438

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
           +VA+  +A   G S S +  V +S++     S  + G L  ++G +++       ++L +
Sbjct: 22  NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN 121
           LL       +   ++  R   G   G  +P   +     +P  +R    G  M  + L  
Sbjct: 82  LLC--GVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR----GRAMAIWGLTV 135

Query: 122 VVGLLLTPIM 131
           +V   L P +
Sbjct: 136 LVAPALGPTL 145

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 8/155 (5%)

Query: 12  FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS 71
            G+S S + +V  +F       +++GG L D+ G ++ L   + L +L+ L   +     
Sbjct: 242 AGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP 300

Query: 72  TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM 131
             +L  +   +G A   A+  + T  +R  P      A  + +  F+LG  +G  L  ++
Sbjct: 301 ALALALL-FLWGFAFSPALQGLQTRLARLAPDA-ADLAGSLNVAAFNLGIALGAALGGLV 358

Query: 132 LSTIGISGPF-----ILFSSLGLLWLSTWTSKVTN 161
           L  +G +        +L  +L L  LS    + T 
Sbjct: 359 LDALGYAATGWVGAALLLLALLLALLSARKDRRTA 393

Length = 394

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 38  GALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF-GLAEGVAMPAMSTL 96
           G L DK+G K ++ W +  +S+ T L+  A   S   +L +  F  G+         ST 
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTY 130

Query: 97  TSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFI--LFSSLGLLWL 152
               +P H ++ A    + GF +GN++     P      G    F   L   L ++++
Sbjct: 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYI 188

Length = 426

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 14/149 (9%)

Query: 15  SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKV-----LAWGVALWSLSTLLTPWAAT 69
           S+S L +   + +  Y+  S I GAL D+Y  KKV     L   V +  L  +       
Sbjct: 32  SASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV---ALLG 88

Query: 70  HSTASLLAVRAFF-GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT 128
                 + V A    +A+    PA   +     P  +   A  +      L  +VG  + 
Sbjct: 89  GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG 148

Query: 129 PIMLSTIGISGPFIL-----FSSLGLLWL 152
            +M +T+GI     +       S  L+  
Sbjct: 149 GLMYATLGIKWAIWVDAVGFAISALLIVS 177

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	339
KOG2532	466	consensus Permease of the major facilitator superf	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.98
KOG2533	495	consensus Permease of the major facilitator superf	99.98
PRK09952	438	shikimate transporter; Provisional	99.98
PRK15075	434	citrate-proton symporter; Provisional	99.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00805	633	oat sodium-independent organic anion transporter.	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK12382	392	putative transporter; Provisional	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
PRK10054	395	putative transporter; Provisional	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.96
PRK11010	491	ampG muropeptide transporter; Validated	99.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
KOG0569	485	consensus Permease of the major facilitator superf	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.94
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.94
KOG2615	451	consensus Permease of the major facilitator superf	99.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
KOG0254	513	consensus Predicted transporter (major facilitator	99.92
PTZ00207	591	hypothetical protein; Provisional	99.91
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.91
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
PRK09669	444	putative symporter YagG; Provisional	99.85
PF13347	428	MFS_2: MFS/sugar transport protein	99.85
PRK10429	473	melibiose:sodium symporter; Provisional	99.84
PRK09848	448	glucuronide transporter; Provisional	99.83
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.82
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.79
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.79
KOG3626	735	consensus Organic anion transporter [Secondary met	99.78
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.76
KOG2563	480	consensus Permease of the major facilitator superf	99.75
PRK11462	460	putative transporter; Provisional	99.75
COG2211	467	MelB Na+/melibiose symporter and related transport	99.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.74
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.69
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.67
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.62
PRK09528	420	lacY galactoside permease; Reviewed	99.6
PRK10489	417	enterobactin exporter EntS; Provisional	99.59
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.58
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.57
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.56
PRK12382	392	putative transporter; Provisional	99.56
PRK03893	496	putative sialic acid transporter; Provisional	99.56
PRK09874	408	drug efflux system protein MdtG; Provisional	99.56
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
PRK03633	381	putative MFS family transporter protein; Provision	99.54
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.53
PRK03545	390	putative arabinose transporter; Provisional	99.52
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.52
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.51
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.51
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.51
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.48
PRK11010	491	ampG muropeptide transporter; Validated	99.46
PRK03699	394	putative transporter; Provisional	99.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.42
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.41
TIGR00891	405	2A0112 putative sialic acid transporter.	99.4
PRK12307	426	putative sialic acid transporter; Provisional	99.39
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.36
PRK09952	438	shikimate transporter; Provisional	99.36
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.36
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.34
TIGR00900	365	2A0121 H+ Antiporter protein.	99.34
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
PRK15075	434	citrate-proton symporter; Provisional	99.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.3
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.3
PRK10504	471	putative transporter; Provisional	99.3
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.29
PLN00028	476	nitrate transmembrane transporter; Provisional	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.27
PRK10091	382	MFS transport protein AraJ; Provisional	99.26
PRK10054	395	putative transporter; Provisional	99.25
PRK11902	402	ampG muropeptide transporter; Reviewed	99.24
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.24
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.23
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.23
TIGR00895	398	2A0115 benzoate transport.	99.22
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.22
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.19
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.18
TIGR00898	505	2A0119 cation transport protein.	99.17
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.17
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.16
KOG0569	485	consensus Permease of the major facilitator superf	99.15
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.14
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.13
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.12
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.11
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.11
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.09
PRK09848	448	glucuronide transporter; Provisional	99.09
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.07
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.07
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.06
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.06
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.06
COG0477	338	ProP Permeases of the major facilitator superfamil	99.05
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.05
PRK10133	438	L-fucose transporter; Provisional	99.05
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.04
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.04
TIGR00901	356	2A0125 AmpG-related permease.	99.01
PRK11043	401	putative transporter; Provisional	99.01
PRK10429	473	melibiose:sodium symporter; Provisional	98.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.92
PRK09669	444	putative symporter YagG; Provisional	98.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.91
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.91
KOG3762	618	consensus Predicted transporter [General function	98.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.91
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.82
PF13347	428	MFS_2: MFS/sugar transport protein	98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.75
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.73
COG2211	467	MelB Na+/melibiose symporter and related transport	98.72
KOG3810	433	consensus Micronutrient transporters (folate trans	98.72
KOG0637	498	consensus Sucrose transporter and related proteins	98.69
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.66
PRK11462	460	putative transporter; Provisional	98.65
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.6
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.6
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.58
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.46
KOG0254	513	consensus Predicted transporter (major facilitator	98.43
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.4
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.37
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.31
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.3
KOG2532	466	consensus Permease of the major facilitator superf	98.25
KOG3762	618	consensus Predicted transporter [General function	98.23
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.22
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.18
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.16
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.16
PF12832	77	MFS_1_like: MFS_1 like family	98.16
PF12832	77	MFS_1_like: MFS_1 like family	98.16
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.05
KOG2533	495	consensus Permease of the major facilitator superf	98.03
PTZ00207	591	hypothetical protein; Provisional	97.97
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.93
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.89
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.48
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.46
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.4
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.39
COG3202	509	ATP/ADP translocase [Energy production and convers	97.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.31
KOG2615	451	consensus Permease of the major facilitator superf	97.26
PRK03612	521	spermidine synthase; Provisional	97.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.19
TIGR00805	633	oat sodium-independent organic anion transporter.	97.15
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.08
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.05
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.98
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.83
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.48
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.3
KOG2563	480	consensus Permease of the major facilitator superf	96.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.68
KOG3097	390	consensus Predicted membrane protein [Function unk	95.47
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.4
KOG3880	409	consensus Predicted small molecule transporter inv	95.36
KOG0637	498	consensus Sucrose transporter and related proteins	93.87
KOG2325	488	consensus Predicted transporter/transmembrane prot	92.94
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	91.89
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.4
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	91.01
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	90.03
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	89.08
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	89.04
COG0477	338	ProP Permeases of the major facilitator superfamil	88.2
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.1
KOG3810	433	consensus Micronutrient transporters (folate trans	87.75
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	85.71
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	85.62
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	84.55
KOG3626	735	consensus Organic anion transporter [Secondary met	84.26
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.94

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.7e-40  Score=292.41  Aligned_cols=330  Identities=34%  Similarity=0.660  Sum_probs=304.8

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhc
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~   88 (339)
                      +.++++|++|-+++.+.+..|+.+++++.|+++||+|.|+++..+.++.++++++.+++...+++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            56799999999999999999999999999999999999999999999999999999998778888899999999999999


Q ss_pred             chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019567           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP  167 (339)
Q Consensus        89 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (339)
                      .+|....+.++|.|++||++..++...+..+|.+++-++++++.+. +||+.+|++.++.+++..++++.+..|+|++++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhCCccccccC-CCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhH
Q 019567          168 FVSKSELRLIQAGKSDSVKKR-NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPW  246 (339)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  246 (339)
                      ...++|++..++++.+++.++ .+.|++++++++.+|...+..++...+.+.+..|.|.|+++++|+|..+.|++.++..
T Consensus       225 ~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~  304 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPF  304 (466)
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHH
Confidence            999999888877665544333 6789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccc--hhHHHHHHHHHHHHhhhcccchhhhhh
Q 019567          247 GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS--PAVAAVLITIALSLSSFSQAGYLLNIQ  324 (339)
Q Consensus       247 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (339)
                      +...+..++.|.++||+.+|.......||..-.++....+++++.+.+.+.  .+...+++.+..++.++..++......
T Consensus       305 l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~  384 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQ  384 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhh
Confidence            999999999999999998876667777899999999999999999988763  345677777778889999999999998


Q ss_pred             -hcccchhhhhhhhc
Q 019567          325 -IAQDFSTALQIQQE  338 (339)
Q Consensus       325 -~~p~~~g~~~g~q~  338 (339)
                       .+|+|.+.++|..|
T Consensus       385 ~~apq~a~~l~g~~~  399 (466)
T KOG2532|consen  385 DIAPQHAGFVMGIIN  399 (466)
T ss_pred             hccchHHHHHHHHHH
Confidence             69999999998754

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.7e-39  Score=269.92  Aligned_cols=326  Identities=19%  Similarity=0.215  Sum_probs=266.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      +...|++.+|.++|.+|+|.+.+.+.+.|.++.++.|.++||.+.|+.+..++++.++..+++++  +++.+.+.+..++
T Consensus        49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf--s~s~~~~~~l~~l  126 (448)
T COG2271          49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF--SPSLFLFAVLWVL  126 (448)
T ss_pred             hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999955  8899999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH--HHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT--PIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      .|..+|.-+|++...+++|+|+++||+..++++.+.++|..+.|++.  +++..+.+||..|++.++++++..+..++..
T Consensus       127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999  8999989999999999999999999999999


Q ss_pred             cCCCCCCCCCChHHHHHHHhCC-ccccccC----CCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCc
Q 019567          160 TNDPCNSPFVSKSELRLIQAGK-SDSVKKR----NPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  234 (339)
                      +|+|++..-.+-+|......+. +++++++    .+.-.+.+++||.+|.++++.++.+..-++...|.|.|+.|+.|+|
T Consensus       207 rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s  286 (448)
T COG2271         207 RDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFS  286 (448)
T ss_pred             CCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCC
Confidence            9999876655444322111111 1111111    1223566889999999999999999999999999999999999999


Q ss_pred             cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccch--hHHHHH-HHHHHHH
Q 019567          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVL-ITIALSL  311 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~  311 (339)
                      ..+++...+.+-.++++|.++.||++||+.+.+      |....+++.+...++++.+...++.  ....++ .++++..
T Consensus       287 ~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~I  360 (448)
T COG2271         287 LVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLI  360 (448)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987432      4566677777777777777777654  333332 2233333


Q ss_pred             hhhcccchhhhhh-hcc-cchhhhhhh
Q 019567          312 SSFSQAGYLLNIQ-IAQ-DFSTALQIQ  336 (339)
Q Consensus       312 ~~~~~~~~~~~~~-~~p-~~~g~~~g~  336 (339)
                      .+-. ........ ..| +..|++.|.
T Consensus       361 yGPq-mLiGl~a~e~~pK~AaGtA~Gf  386 (448)
T COG2271         361 YGPQ-MLIGLAAAEFVPKKAAGTATGF  386 (448)
T ss_pred             hhHH-HHHHHHHhccccHhhccchhch
Confidence            3322 22222222 556 456777664

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-37  Score=264.63  Aligned_cols=305  Identities=21%  Similarity=0.251  Sum_probs=249.5

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      .++|++.+|+|+|..+.|+..|.|.+++.+++|+...+.||+.||++++..+.++.++++++  ++++||+.++++|++.
T Consensus        34 gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~--alAp~f~~Ll~aR~~~  111 (394)
T COG2814          34 GLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLS--ALAPSFAVLLLARALA  111 (394)
T ss_pred             hchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999  6799999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      |+..|..++...++..|..|+++|++++++...+.+++.++|.+++.++.|.+|||..|++.+.++++..+..+..+|  
T Consensus       112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--  189 (394)
T COG2814         112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999888888888  


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  242 (339)
                      |++.+.                +++.+..+..+++|+|+++...+..++...+.+...+|+.++++|..|++.+..++..
T Consensus       190 ~~~~~~----------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~L  253 (394)
T COG2814         190 PSEISG----------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL  253 (394)
T ss_pred             CccCCC----------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHH
Confidence            221111                1111222357789999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccc-hhHHHHHHHHHHHHhhhcccchhh
Q 019567          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-PAVAAVLITIALSLSSFSQAGYLL  321 (339)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  321 (339)
                      ..+++++.+|+.++|++.|| +.+         ..+.......+...+.+.+..+ .+.......+..+...........
T Consensus       254 l~~Gv~~~~Gn~~gGrl~dr-~~~---------~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~  323 (394)
T COG2814         254 LAFGIAGFIGNLLGGRLADR-GPR---------RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQT  323 (394)
T ss_pred             HHHHHHHHHHHHHHhhhccc-cch---------hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            99999999999999999999 543         3444554555555555554443 333333222211111111122222


Q ss_pred             hhh-hcccchhhhhhhh
Q 019567          322 NIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       322 ~~~-~~p~~~g~~~g~q  337 (339)
                      -.. ..|+.++..++.+
T Consensus       324 ~~a~~~p~~~~~a~sl~  340 (394)
T COG2814         324 RLARLAPDAADLAGSLN  340 (394)
T ss_pred             HhcccCCCchHHHHHHH
Confidence            222 4457777776654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=1.7e-36  Score=265.97  Aligned_cols=311  Identities=13%  Similarity=0.049  Sum_probs=226.7

Q ss_pred             CCcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +++.+|.+++|+|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+....  ...+|++.+++.|+
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~R~   87 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL--LDPFNYEWLLACQL   87 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999988766555544443322  22379999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      ++|++.+. .+.....++|++|+|+|++++++.+.+..+|..++++++.++.+++|||+.|++.++++++..++.++..|
T Consensus        88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903        88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999986 56666777999999999999999999999999999999999999999999999999998888888888889


Q ss_pred             CCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhH
Q 019567          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  240 (339)
                      |+|+++++..+.+              +..+++++++++|.+|...+..++....++.+.+|+|+|+++ .|++.+ .+.
T Consensus       167 ~~p~~~~~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~  230 (368)
T TIGR00903       167 ALPFQAAEGFGFK--------------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGD  230 (368)
T ss_pred             CCCCCCCCCcchH--------------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHH
Confidence            8876542211000              001246789999999999999999999999999999999977 578764 555


Q ss_pred             hhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchh
Q 019567          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (339)
                      ......+.+.++   .++++||..|++.     |+.......++.++....+....+.........+..++.....+...
T Consensus       231 ~~~l~~~~g~~g---~~~~~d~~~r~~~-----r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  302 (368)
T TIGR00903       231 AVALAILAGLIG---VAVIPDRVARAGL-----RSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIM  302 (368)
T ss_pred             HHHHHHHHHHHH---HHHhhHHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHH
Confidence            555555544444   5788898876532     11222222333333333434333333333333333333333333344


Q ss_pred             hhhh--hcccchhhhhhhhc
Q 019567          321 LNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       321 ~~~~--~~p~~~g~~~g~q~  338 (339)
                      ....  ..++.+|+.+|..+
T Consensus       303 ~~~~~~~p~~~rgt~~G~~~  322 (368)
T TIGR00903       303 DWIGKFCDKELHGKAAGAIG  322 (368)
T ss_pred             HHHHHhcchhhcCcccchhh
Confidence            4545  44468898888754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.4e-36  Score=274.88  Aligned_cols=328  Identities=27%  Similarity=0.459  Sum_probs=253.7

Q ss_pred             HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcch
Q 019567           11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (339)
Q Consensus        11 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~   90 (339)
                      |+++|..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++...+++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            89999999999999999999999999999999999999999999999999888755445678889999999999999999


Q ss_pred             hhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 019567           91 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV  169 (339)
Q Consensus        91 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (339)
                      +....++.|++|+++|++++++...+..+|..+++++++.+.+.. +||+.|++.++++++..+.++...+|+|+++++.
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~  229 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI  229 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence            999999999999999999999999999999999999999999884 9999999999988888777777777877665544


Q ss_pred             ChHHHHHHHhCCcc-ccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHH
Q 019567          170 SKSELRLIQAGKSD-SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT  248 (339)
Q Consensus       170 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  248 (339)
                      +++|++..++..++ +++++.+.++++++++|.+|...+..++.....+.+.+|+|.|+++.+|++..+.+....+..++
T Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~  309 (465)
T TIGR00894       230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF  309 (465)
T ss_pred             CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence            44444333222111 11122345689999999999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHHhccchHH-HHHHHHHHHhhhhhhHhhhhhc-ccchhHHHHHHHHHHHHhhhcccchhhhhh-h
Q 019567          249 MAVSGYMAGKASDSLIKAGYSLTL-VRKIMQSIGFIGPGVSLLCLNY-AKSPAVAAVLITIALSLSSFSQAGYLLNIQ-I  325 (339)
Q Consensus       249 ~~~~~~~~g~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  325 (339)
                      ..++.++.|+++||+++|+..... .++.....+..+..+...+... ..+.......+.+..++.+........... .
T Consensus       310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  389 (465)
T TIGR00894       310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDL  389 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhc
Confidence            999999999999999876533322 2223323332222222222222 223333333344444444444444444445 7


Q ss_pred             cccchhhhhhhhc
Q 019567          326 AQDFSTALQIQQE  338 (339)
Q Consensus       326 ~p~~~g~~~g~q~  338 (339)
                      .|++.|.++|..+
T Consensus       390 ~~~~~g~~~g~~~  402 (465)
T TIGR00894       390 APRFLGFIKGITG  402 (465)
T ss_pred             ChhHHHHHHHHHH
Confidence            7888888888764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=3.5e-36  Score=268.96  Aligned_cols=262  Identities=16%  Similarity=0.251  Sum_probs=216.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      +...|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++  +.++|++.+++.|++
T Consensus        28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l  105 (412)
T TIGR02332        28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTAT--MFATGPESLYLLRIL  105 (412)
T ss_pred             HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh------hccchHHHHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      +|++.+...+....++.|++|+++|++++++++.+.++|..+++.+++++.+      ..|||+.|++.++++++..++.
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988864      3699999999988888777777


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHh----CC---ccccc--cCC----CccHHHHhcchhHHHHHHHHHhhHHHHHHHHHh
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQA----GK---SDSVK--KRN----PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  222 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (339)
                      +++.||+|++.+..++++++...+    +.   +++++  ++.    ...+++++ +|.+|...+..++....++.+.+|
T Consensus       186 ~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  264 (412)
T TIGR02332       186 WFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIW  264 (412)
T ss_pred             hhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888887644322222221110    10   00000  011    11234444 578888888888888889999999


Q ss_pred             hhhhhhhh-hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          223 MPIYFNTV-FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       223 ~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +|.++++. .|.+..+++.......++.+++.++.|+++||+++|
T Consensus       265 ~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       265 TPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             HHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            99999883 367778889889999999999999999999999865

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.3e-35  Score=264.07  Aligned_cols=242  Identities=17%  Similarity=0.184  Sum_probs=210.7

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      +++|.+.+|+|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+..+..++++.+  ..++|++.+++.|+++
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~~~  107 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLS--ALAWNFTVLLISRIGI  107 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999  5589999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      |++.+...+...+++.|++|+|+|++++++.+.+.++|..++|++++.+.++.|||+.|++.++++++..+..+...||+
T Consensus       108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999889999999999999999999999999999999999999999999999999999999988877666666555654


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  242 (339)
                      +++++                    +..++.++.+|+|+++......++.....+....+.+.++++..|.++.+.+.+.
T Consensus       188 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~  247 (390)
T PRK03545        188 PSEHS--------------------GSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLL  247 (390)
T ss_pred             CCCCc--------------------chHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            33211                    0011356788899888766666666666666678888898888899999999999


Q ss_pred             HHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          243 AVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ....++.++++++.+++.||.++|
T Consensus       248 ~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        248 LLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchh
Confidence            999999999999999999998754

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=3.4e-35  Score=261.64  Aligned_cols=264  Identities=26%  Similarity=0.499  Sum_probs=226.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++++|.|+.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+++  +.++|++.+++.|++
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l   91 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ--AFAGAYVSLYILRVL   91 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH--HHHcCHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998  558899999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+....++.|++|+|+|++++++.+...++|..+++.+++.+.+..+||+.|++.++..++..+..+...||
T Consensus        92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (399)
T TIGR00893        92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPD  171 (399)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecC
Confidence            99999999999999999999999999999999999999999999999999999999999999988887777766666677


Q ss_pred             CCCCCCCCChHHHHHHHhC-----CccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          162 DPCNSPFVSKSELRLIQAG-----KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      ++++++..++++++...+.     +++++++..+.+.++.+++|+++...+..++..........+.|.|+++.+|.++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (399)
T TIGR00893       172 PPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL  251 (399)
T ss_pred             CCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHH
Confidence            6654433332222211111     11112223344677889999999999999999999999999999999998899999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhc
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAG  267 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  267 (339)
                      +.+.+.....++.+++.++.|++.||+++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       252 EAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999873

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.1e-36  Score=273.09  Aligned_cols=265  Identities=17%  Similarity=0.152  Sum_probs=216.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh---hhhcchhHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW---AATHSTASLLAV   78 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   78 (339)
                      ++..|.+++|+|+|.++.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++   ..++|++.+++.
T Consensus        49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (467)
T PRK09556         49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIAL  128 (467)
T ss_pred             hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999998888887776633   125899999999


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc---cchHHHHHHHHHHHHHHHHH
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~~  155 (339)
                      |+++|++.+...|...++++||+|+++|++++|+...+.++|.++++.+..++.+..   +||..|.+.+++.++..++.
T Consensus       129 r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~  208 (467)
T PRK09556        129 WALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIG  208 (467)
T ss_pred             HHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987776653   69999999888888777777


Q ss_pred             HhhccCCCCCCCCCChHHHHHHH-hCCccccccCCC---cc-HHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhh
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQ-AGKSDSVKKRNP---PS-LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (339)
                      ++..+++|++.+..++++..... ..+++++++++.   .. .++.+|+|.+|...+..++....+++...|+|.|+++.
T Consensus       209 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~  288 (467)
T PRK09556        209 LRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE  288 (467)
T ss_pred             HHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777776654333222210000 000000001110   11 23378999999999988888888888899999999998


Q ss_pred             hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +|++..+++.......++.++++++.|+++||+++|
T Consensus       289 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r  324 (467)
T PRK09556        289 LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR  324 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            999999999999889999999999999999999876

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=3.4e-35  Score=268.55  Aligned_cols=326  Identities=17%  Similarity=0.116  Sum_probs=248.4

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|++.+|+|.+.++.+|+.+.|.+++.++.++.|+++||+|||+++..+..++.++++++  +.++|++.++++|++
T Consensus        26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~--~~a~~~~~li~~r~l  103 (495)
T PRK14995         26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA--AFSPTASWLIATRAL  103 (495)
T ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhC-CcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      +|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.++.|||+.|++...++++..++..+..|
T Consensus       104 ~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        104 LAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999998888888887776 67899999999999999999999999999999999999999988888777777777777


Q ss_pred             CCCCCCCCCCh-HHHH-----------HHHhCCc------------------------cccccCCCccHHHHhcchhHHH
Q 019567          161 NDPCNSPFVSK-SELR-----------LIQAGKS------------------------DSVKKRNPPSLRHLLSKLPSWT  204 (339)
Q Consensus       161 ~~~~~~~~~~~-~~~~-----------~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~  204 (339)
                      |+++++++..+ .+..           ..+....                        .+.+.+.+....+++|+|.+..
T Consensus       184 ~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~  263 (495)
T PRK14995        184 RQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILS  263 (495)
T ss_pred             CCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHH
Confidence            76543322111 1100           0000000                        0111112222357889999988


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhh
Q 019567          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (339)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  284 (339)
                      ..+..++.....++...++|.|+++.+|+++.+++.......++..++.++.|++.||+++|         ..+..+.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~g~~~  334 (495)
T PRK14995        264 GVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR---------LVATGGMAL  334 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHH
Confidence            88888888888888889999999999999999999999999999999999999999999865         344555555


Q ss_pred             hhhHhhhhhcc---cchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhhc
Q 019567          285 PGVSLLCLNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       285 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q~  338 (339)
                      ..++..++...   ++.+.......+.+...+...+.......  ..++++|...+..+
T Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (495)
T PRK14995        335 SALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET  393 (495)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence            55554443321   23333333333333333444333333333  56677888776643

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.8e-34  Score=259.91  Aligned_cols=263  Identities=16%  Similarity=0.186  Sum_probs=214.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++.+++.+++  ..++|++.+++.|++
T Consensus        43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  120 (434)
T PRK11663         43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILF--GFSSSLWAFALLWVL  120 (434)
T ss_pred             HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999988  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.|...+...+++.|++|+++|++++++.+.+.++|..++|.+.+.+.+.+|||+.|++.++++++..+...+..||
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~  200 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD  200 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888877666555556677


Q ss_pred             CCCCCCCCChHHHH-HHHhCCcc-ccccCCCcc-H-HHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch
Q 019567          162 DPCNSPFVSKSELR-LIQAGKSD-SVKKRNPPS-L-RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (339)
Q Consensus       162 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  237 (339)
                      +|++.+..+.++.+ ..++..++ ++++.+..+ + +..+++|.++...+..++....+....+|+|.|+++.+|++..+
T Consensus       201 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~  280 (434)
T PRK11663        201 KPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT  280 (434)
T ss_pred             CHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence            66543211110000 00000000 000011111 2 23667888998888878777788888899999998878999999


Q ss_pred             hhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ++...+...+++.+++++.|+++||+.++
T Consensus       281 a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        281 ANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            99999999999999999999999998543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=3e-34  Score=255.24  Aligned_cols=242  Identities=14%  Similarity=0.182  Sum_probs=204.6

Q ss_pred             CCcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +++++|.+++|+|+|.++.++..+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+  ++++|++.++++|+
T Consensus        28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~--~~a~~~~~ll~~r~  105 (393)
T PRK09705         28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMR--ELYPQSALLLSSAL  105 (393)
T ss_pred             cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHH--HHCcchHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999999999999999999  55899999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHhhc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      ++|++.+...+....++.|++| ++|+++++.+..+...|..+++.+++++.++. +||+.+...++..++.....+...
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  184 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQS  184 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999997 88999999999999999999999999988875 899998876665544333333222


Q ss_pred             cCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhh
Q 019567          160 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  239 (339)
                      +++|++++                 +++   .+.++.+++|+.+...+..++....++...+|+|.|+++ +|.++.+++
T Consensus       185 ~~~~~~~~-----------------~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag  243 (393)
T PRK09705        185 AREVASSH-----------------KTT---TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSG  243 (393)
T ss_pred             cCCCcccc-----------------CCC---cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhh
Confidence            22221110                 000   112345567888877777777778888889999999988 799999999


Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ...+...++.++++++.+++.||.++|
T Consensus       244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        244 SLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            999999999999999999999998865

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=5.2e-34  Score=251.82  Aligned_cols=322  Identities=20%  Similarity=0.245  Sum_probs=237.0

Q ss_pred             Ccchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc-chhHHHHHH
Q 019567            2 SVAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVR   79 (339)
Q Consensus         2 ~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r   79 (339)
                      ++..|. +++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++..++.+++  ..++ +++.+++.|
T Consensus        21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~   98 (366)
T TIGR00886        21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA--GLAVQSYSVLLLLR   98 (366)
T ss_pred             HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHH
Confidence            567785 999999999999999999999999999999999999999999999999999999998  5578 999999999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh----------hccchHHH-HHHHHHH
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS----------TIGISGPF-ILFSSLG  148 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~----------~~~w~~~f-~~~~~~~  148 (339)
                      +++|++.+ ..+....++.|++|+|+|++++++.....++|..+++.+++.+.+          +.+||+.| +..++..
T Consensus        99 ~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886        99 LFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            99999965 456788999999999999999999998888888888888776654          34899999 4445555


Q ss_pred             HHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhh
Q 019567          149 LLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFN  228 (339)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  228 (339)
                      .+..++.+...+|+|+++++.++.+.+    +...+.+++...+.++.+++|+++...+..++.....+....+.|.|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (366)
T TIGR00886       178 LLPALLIFFVGADTPPGKPATGKLSFK----GARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFK  253 (366)
T ss_pred             HHHHHHHHHhcccCCcccccchhcccc----cccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555556655432211110000    0000011111124667888999988888877777777888899999999


Q ss_pred             hhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhccc--chhHHHHHHH
Q 019567          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLIT  306 (339)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  306 (339)
                      +.+|+++.+++.+.....+.+++++++.|++.||+++|       +...............+.+...+  +.+.......
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA-------RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFV  326 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc-------hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            98899999999888888999999999999999999876       22332222222222222222222  3333333344


Q ss_pred             HHHHHhhhcccchhhhhh-hcccchhhhhhhh
Q 019567          307 IALSLSSFSQAGYLLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~q  337 (339)
                      ......+...+....... ..|+++|+++|..
T Consensus       327 ~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~  358 (366)
T TIGR00886       327 ALFFFSGAGNGSTFALVPHIFRRATGAVSGLV  358 (366)
T ss_pred             HHHHHhccccchhhhcchhhchhhcccHHHHH
Confidence            444555666666666666 7889999988864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=4.3e-34  Score=261.71  Aligned_cols=326  Identities=15%  Similarity=0.126  Sum_probs=248.9

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|.|+++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.+++  +.++|++.+++.|++
T Consensus        22 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~   99 (485)
T TIGR00711        22 NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC--GVAPNLELMIIFRVI   99 (485)
T ss_pred             HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH--hCcCCHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.++.+||+.|++.++++++..+...+..||
T Consensus       100 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       100 QGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             HHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888887776666666666


Q ss_pred             CCCCCCCC-ChHHH-----------HHHHhCCcc-------------------------ccccCCCccHHHHhcchhHHH
Q 019567          162 DPCNSPFV-SKSEL-----------RLIQAGKSD-------------------------SVKKRNPPSLRHLLSKLPSWT  204 (339)
Q Consensus       162 ~~~~~~~~-~~~~~-----------~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~  204 (339)
                      +++++++. +....           ....+.+++                         +.+++++....+++++|+++.
T Consensus       180 ~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (485)
T TIGR00711       180 DKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTI  259 (485)
T ss_pred             ccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHH
Confidence            54432221 11100           000000000                         001111222346788999988


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhh
Q 019567          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (339)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  284 (339)
                      ..+..++....++....++|.|+++.+|+++.+++.......++.+++.++.|++.||+++|         +....+..+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~g~~~  330 (485)
T TIGR00711       260 GCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR---------KLVTIGLIL  330 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH---------HHHHHHHHH
Confidence            88888888888888889999999998999999999999999999999999999999999875         445556656


Q ss_pred             hhhHhhhhhc--cc--chhHHHHHHHHHHHHhhhcccchhhhh-h-hcccchhhhhhhhc
Q 019567          285 PGVSLLCLNY--AK--SPAVAAVLITIALSLSSFSQAGYLLNI-Q-IAQDFSTALQIQQE  338 (339)
Q Consensus       285 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~~~g~~~g~q~  338 (339)
                      .+++..++..  .+  +.+.......+.....+.......... . ..++++|..+|..+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  390 (485)
T TIGR00711       331 YAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSN  390 (485)
T ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHH
Confidence            5555555442  22  222222222222333333333333333 3 66688888887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=3.4e-33  Score=248.32  Aligned_cols=302  Identities=17%  Similarity=0.150  Sum_probs=226.4

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      +.+|++.+|+|.|+++.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++.+++  ..++|++.+++.|+++
T Consensus        41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~  118 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLV--SFANSFSLLLIGRACL  118 (394)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH--HHHChHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999998  5589999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      |++.+...+...+++.|++|+|+|++++++...+.++|..++|++++.+.+.+|||+.|++.++++++..+......||+
T Consensus       119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998877766555444445554


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  242 (339)
                      +++++                    +...+.++.+|+|+++...+..++.....+...++.++++.+++|+++.+.+...
T Consensus       199 ~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~  258 (394)
T PRK10213        199 PGEPS--------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVL  258 (394)
T ss_pred             Ccccc--------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence            32110                    0011345778899988877666666666666667764444455799999999988


Q ss_pred             HHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhh
Q 019567          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLN  322 (339)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (339)
                      ...+++.++++++.+++.||.++         +.......+.......+....++.+.......+.+...+...+.....
T Consensus       259 ~~~~~~~iig~~~~~~l~~r~~~---------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~  329 (394)
T PRK10213        259 LSFGIASFVGTSLSSFILKRSVK---------LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTW  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            88888999999999999998432         233333333233333333333344333333333333333444444444


Q ss_pred             hh-hcccchhhhhh
Q 019567          323 IQ-IAQDFSTALQI  335 (339)
Q Consensus       323 ~~-~~p~~~g~~~g  335 (339)
                      .+ ..|++.+...+
T Consensus       330 ~~~~~~~~~~~~~~  343 (394)
T PRK10213        330 ITRSLADQAEKAGS  343 (394)
T ss_pred             HHHHCcccHHHHHH
Confidence            45 55655544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.3e-33  Score=249.89  Aligned_cols=310  Identities=18%  Similarity=0.194  Sum_probs=235.3

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++  +.++|++.+++.|++
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  100 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY--AIADSLAALYLTYGL  100 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999998  568999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+.....+.|++| |+|+++.++...+.++|..+++++.+.+.+..+||+.|++.++++++..+..++..++
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            999999888888889999996 6799999999999999998888787777788899999999998888877776666655


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      ++++++++++             +.+++..+.++.+++|+++...+..++..........+.+.|.++ +|.+..+.+..
T Consensus       180 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  245 (377)
T TIGR00890       180 PPGQLIKTNI-------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLA  245 (377)
T ss_pred             CchhccccCc-------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            4432211100             001111245678888888887777776666666666777777666 68888888988


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchh--HHHHHHHHHHHHhhhcccch
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA--VAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .....++.++++++.|++.||++||         ..+..+..+..++..+....++..  .............+...+..
T Consensus       246 ~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  316 (377)
T TIGR00890       246 VSISSIFNGGGRPFLGALSDKIGRQ---------KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF  316 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhcc
Confidence            9999999999999999999999876         344455555555555554444321  11111222222233333333


Q ss_pred             hhhhh--hcccchhhhhhhh
Q 019567          320 LLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       320 ~~~~~--~~p~~~g~~~g~q  337 (339)
                      .....  ..++++|+..|..
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~  336 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFL  336 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHH
Confidence            33333  5567788877754

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=1.5e-34  Score=253.70  Aligned_cols=320  Identities=24%  Similarity=0.348  Sum_probs=238.6

Q ss_pred             cchh-hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            3 VAVV-PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         3 ~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      +..| .+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+.  .+++|.+.+++.|++
T Consensus        17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l   94 (352)
T PF07690_consen   17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL--AFASNFWLLLIARFL   94 (352)
T ss_dssp             HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh--hhhhhHHHHhhhccc
Confidence            4567 8899999999999999999999999999999999999999999999999999996666  345888899999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+.+..+||+.|++.+++.++..++.....++
T Consensus        95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen   95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877755455555


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCc-cHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCc-cchhh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN-LKQAA  239 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~  239 (339)
                      ++++++..++++++        ++++++.. .++.+.++|.+|......++..........+.|.|+++.+|.+ ..+.+
T Consensus       175 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  246 (352)
T PF07690_consen  175 PPPPRERESPKESE--------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAG  246 (352)
T ss_dssp             -STTTT--SSTTTT----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHH
T ss_pred             cccccccccccccc--------cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHH
Confidence            55443332222210        01111222 3677778887775556666666677778999999988889999 78999


Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccch
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .......+.+++++++.+++.||+++++      +.........+...........++.........+.....+...+..
T Consensus       247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  320 (352)
T PF07690_consen  247 LLFSIFGIVGIIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPIL  320 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999987641      1122222222222222222222233333333333344555556666


Q ss_pred             hhhhh--hcccchhhhhhhhc
Q 019567          320 LLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       320 ~~~~~--~~p~~~g~~~g~q~  338 (339)
                      .....  ..|+++|++.|..+
T Consensus       321 ~~~~~~~~~~~~~g~~~g~~~  341 (352)
T PF07690_consen  321 FSLIQELVPPEYRGTAFGLFN  341 (352)
T ss_dssp             HHHHHCCCHTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHH
Confidence            66666  55588998887653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=2.3e-33  Score=255.03  Aligned_cols=323  Identities=18%  Similarity=0.119  Sum_probs=234.9

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++  +.++|++.+++.|++
T Consensus        56 ~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~--~~~~s~~~l~~~r~l  133 (476)
T PLN00028         56 APLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM--SLVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999888  558899999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh---------hccchHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------TIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~---------~~~w~~~f~~~~~~~~~~~  152 (339)
                      +|++.+.. .....+++|++|+++|++++++.....++|..+++.+.+.+..         ..|||+.|++.++++++..
T Consensus       134 ~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~  212 (476)
T PLN00028        134 IGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMG  212 (476)
T ss_pred             HHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Confidence            99998764 4466789999999999999999988777787777666654432         2589999999999888777


Q ss_pred             HHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  232 (339)
                      +..++..++.|++. .   ++.+   ++. +.+++.....+++.++++++|...+..++.....+...+++|.|+.+++|
T Consensus       213 l~~~~~~~~~p~~~-~---~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  284 (476)
T PLN00028        213 ILVLTLGQDLPDGN-Y---RELK---KSG-TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG  284 (476)
T ss_pred             HHHHHHcCcCCCCc-h---hhHH---hcC-ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence            66665554444321 1   1100   000 00111111245677888998888777776666667778899999988889


Q ss_pred             CccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHh
Q 019567          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (339)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (339)
                      ++..+++.+.....+++++++++.|+++||+++|....  .|+........+.++...++...++.+......++.....
T Consensus       285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~--~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~  362 (476)
T PLN00028        285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR--GRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFV  362 (476)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998763211  1344444444444444444444444333333333333333


Q ss_pred             hhcccchhhhhh-hcccchhhhhhhh
Q 019567          313 SFSQAGYLLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       313 ~~~~~~~~~~~~-~~p~~~g~~~g~q  337 (339)
                      ....+....... +.|+++|...|..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~g~~~g~~  388 (476)
T PLN00028        363 QAACGATFGIVPFVSRRSLGVISGLT  388 (476)
T ss_pred             HHhhhhhcccCcccChhhchhhhhhh
Confidence            333344444445 7788888887764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=3.7e-33  Score=248.03  Aligned_cols=248  Identities=19%  Similarity=0.246  Sum_probs=216.3

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .+..|.+++|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+  ..+++++.+++.|++
T Consensus        25 ~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l  102 (385)
T TIGR00710        25 LPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL--ALSNNIETLLVLRFV  102 (385)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999988  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.++.+||+.|++.++..++..+..+...||
T Consensus       103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888877776666666666


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++.+++               +...++++.+++|+++...+...+.....+....+.|.++++.+|.++.+.+.+
T Consensus       183 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  247 (385)
T TIGR00710       183 TLPYEARIQIS---------------TYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLL  247 (385)
T ss_pred             CCCCcccCCHH---------------HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHH
Confidence            55433221111               011245678889998888777777777777888889999988889999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .....++.++++++.+++.||+++|
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~  272 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAK  272 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999999999999999876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=4.6e-34  Score=253.04  Aligned_cols=263  Identities=18%  Similarity=0.242  Sum_probs=218.3

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++++|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++  ..+++++.+++.|++
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   92 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF--GFSTSLWVMAALWAL   92 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH--HHhhhHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHH-hHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL-LLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|++.+...+...+++.|++|+++|++++++.+.+..+|..++| .++..+.+..+||+.|++.+++.++..+..+...|
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (379)
T TIGR00881        93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLR  172 (379)
T ss_pred             HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence            99999999999999999999999999999999999999999999 57777778889999999988888777777776777


Q ss_pred             CCCCCCCCCChHHHH--HHHhCC--ccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          161 NDPCNSPFVSKSELR--LIQAGK--SDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      |++++++..++++..  ..+..+  ++++.+..+...++++++|.++...+..++..........+.|.|+++.+|+++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  252 (379)
T TIGR00881       173 DSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE  252 (379)
T ss_pred             CCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            766543221111110  000000  0011111223456778899999888888888888888899999999998899999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.+.......++.++++++.+++.||..++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  282 (379)
T TIGR00881       253 KASWAFTLYELGGLVGTLLAGWLSDKLFNG  282 (379)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHcCC
Confidence            999999999999999999999999987544

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=3.8e-33  Score=245.98  Aligned_cols=315  Identities=15%  Similarity=0.103  Sum_probs=238.3

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc-----chhHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-----STASLLA   77 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   77 (339)
                      +.+|.+.+|++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.++  .+     |++.+++
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   97 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF--VALLGGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH--HHHcCCCcHHHHHH
Confidence            4578888999999999999999999999999999999999999999999999998888887743  55     9999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      .|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..|||+.|++.++..++..+..+.
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS  177 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999887766655444433


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHH-HhhhhhhhhhhCCccc
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVNLK  236 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~g~~~~  236 (339)
                      ..++++++++..+.+++          ..++....+++++|+|.++...+..++......... .+.|.+.++.+|.++.
T Consensus       178 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (365)
T TIGR00900       178 VRIPELAASEIQALSNA----------VLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGST  247 (365)
T ss_pred             cccccCCCccccccchh----------HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchH
Confidence            32222221111110000          001112246778889999888877777777776666 8889998887899999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccc-hhHHHHHHHHHHHHhhhc
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-PAVAAVLITIALSLSSFS  315 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  315 (339)
                      +.+.......++.+++.++.+++.||.+++         .....+....+++.......++ .+...+..++.....+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  318 (365)
T TIGR00900       248 HYGWVLAAFGLGALLGALLLGLLGRYFKRM---------ALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI  318 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchh---------HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998765         4444555555555555554443 333333333333333444


Q ss_pred             ccchhhhhh--hcccchhhhhhhhc
Q 019567          316 QAGYLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       316 ~~~~~~~~~--~~p~~~g~~~g~q~  338 (339)
                      .+.......  ..|+++|...+..+
T Consensus       319 ~~~~~~~~~~~~~~~~~g~~~~~~~  343 (365)
T TIGR00900       319 NVPQGTLLQRRVPAELLGRVFGAQF  343 (365)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            444444444  55678888887653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.1e-33  Score=248.92  Aligned_cols=311  Identities=21%  Similarity=0.196  Sum_probs=231.1

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++  ..++|++.+++.|++
T Consensus        35 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l  112 (406)
T PRK11551         35 GVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLAT--AQAWDFPSLLVARLL  112 (406)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999998888  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.++..+.+..+||+.|++.++..++..+......||
T Consensus       113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (406)
T PRK11551        113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPE  192 (406)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999888888999999999887766666666666677


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhc---chhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLS---KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  238 (339)
                      ++++.++.++++           +   ++...++.++   +++.+......++.....+....|.|.++++ .|+++.+.
T Consensus       193 ~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~  257 (406)
T PRK11551        193 SRAFAQAAGAGK-----------Q---RAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQA  257 (406)
T ss_pred             ChhHHhccCcch-----------h---hhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhh
Confidence            654322111000           0   0001112222   2233334444455555666777889999988 69999999


Q ss_pred             hHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccc
Q 019567          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (339)
                      +.......++.++++++.|++.||+++|         +....+.+...++...+...++.+.................+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  328 (406)
T PRK11551        258 GLVQIAFNIGGALGSLLIGALMDRLRPR---------RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSV  328 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999875         3333444444455554444444433322222222222222233


Q ss_pred             hhhhhh--hcccchhhhhhhhc
Q 019567          319 YLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       319 ~~~~~~--~~p~~~g~~~g~q~  338 (339)
                      ......  ..++++|+..|..+
T Consensus       329 ~~~~~~~~~p~~~~g~~~g~~~  350 (406)
T PRK11551        329 LYALAPLFYPTQVRGTGVGAAV  350 (406)
T ss_pred             HHHHHHHHcchhhhhhhhhHHH
Confidence            333334  55577888877653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=6.4e-33  Score=249.79  Aligned_cols=245  Identities=17%  Similarity=0.187  Sum_probs=190.2

Q ss_pred             CcchhhhHhHhC---CCccchhHHHHHH---HHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchh--
Q 019567            2 SVAVVPLAAKFG---WSSSFLGIVQSSF---LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (339)
Q Consensus         2 ~~~~~~i~~~~~---~s~~~~g~~~s~~---~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   73 (339)
                      +...|.+.+|++   .+..+.+...+.+   .++..+++++.|+++||+|||+++..+.++++++++++  ++++|+.  
T Consensus        42 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~--~~~~~~~~~  119 (432)
T PRK10406         42 SFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI--ACLPGYETI  119 (432)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH--hhcCCchhH
Confidence            456788999985   4555444444444   44445999999999999999999999999999999999  5577764  


Q ss_pred             ------HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhccchH
Q 019567           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (339)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~~w~~  139 (339)
                            .+++.|+++|++.|..++...+++.|++|+|+|+++.++.+.+...|..+++.+...+.        +.+|||+
T Consensus       120 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~  199 (432)
T PRK10406        120 GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRI  199 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence                  58899999999999999999999999999999999999999888888888887765543        2579999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHh-hHHHHHH
Q 019567          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFV  218 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  218 (339)
                      +|++.+++.++.. ......||+++++       .+         + +++..++++++|+|+.+...+...+ ....++.
T Consensus       200 ~F~i~~~~~ll~~-~~~~~~~e~~~~~-------~~---------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  261 (432)
T PRK10406        200 PFALGAVLAVVAL-WLRRQLDETSQQE-------TR---------A-LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYT  261 (432)
T ss_pred             HHHHHHHHHHHHH-HHHhcCCCCchHH-------Hh---------h-hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9998777666543 2233344443211       00         0 0012357888899888776655544 3667788


Q ss_pred             HHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          219 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       219 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ..+|+|.|+++.+|++..+.+.......+...++.++.|+++||++||
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr  309 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR  309 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            889999999888899988888888888888888899999999999876

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=1.5e-32  Score=243.69  Aligned_cols=260  Identities=17%  Similarity=0.198  Sum_probs=214.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .+.+|.+++|+|.|.++.|+..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+++  +.++|++.+++.|++
T Consensus        23 ~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~r~l  100 (382)
T PRK10091         23 MGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF--TLSSSYLMLAIGRLV  100 (382)
T ss_pred             HhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+....++.|++|+++|+++++....+..+|..++|++++.+.+..+||+.|++.++..++..+..+...||
T Consensus       101 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~  180 (382)
T PRK10091        101 SGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPD  180 (382)
T ss_pred             HHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988888899999999999999999999999999999999999999999999999999988877766655666676


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      .+++++. +.                   .+..+.+|+++.+......++.....+....+++.++++.+|+++.+.+.+
T Consensus       181 ~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  240 (382)
T PRK10091        181 IRDEAKG-GL-------------------REQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFI  240 (382)
T ss_pred             CCccccc-CH-------------------HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            5432110 00                   011245677777766655555555555566777888888789999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      .....++.++++++.+++.||++++         +....+..+.+++.+++
T Consensus       241 ~~~~~~~~~ig~~~~g~l~~r~~~~---------~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        241 MMLVGLGMVLGNLLSGRLSGRYSPL---------RIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHHHHHHhHHHheeccccCch---------hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865         33344444445544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=4.3e-32  Score=240.56  Aligned_cols=250  Identities=15%  Similarity=0.197  Sum_probs=214.9

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .|.+|.+.+|+|+|+++.++..+.+.++..+++++.|+++||+|||+++..+..+.+++...+  ..+++++.+++.|++
T Consensus        11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~l   88 (377)
T PRK11102         11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVAC--ALAQTIDQLIYMRFL   88 (377)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999888887776666666666


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++.+.+             .++...++++.+++|+++...+..++.....+....+.|.++.+.+|+++++.+..
T Consensus       169 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~  235 (377)
T PRK11102        169 TLPKERRQPFH-------------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYY  235 (377)
T ss_pred             cCcccccCCCC-------------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHH
Confidence            54332111100             00111245678888888877777766666777777888888888889999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .....++.++++++.+++.||+++|
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~  260 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGAL  260 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            9999999999999999999999876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-33  Score=235.37  Aligned_cols=308  Identities=19%  Similarity=0.218  Sum_probs=256.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh-cchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-HSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~   80 (339)
                      +++.+.+.+|+|+|+.|.+++.+...+...+..++.|.+.||+|.|++..++.++..+.++..+++.. ++++.+++.++
T Consensus        34 s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gl  113 (417)
T COG2223          34 SPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGL  113 (417)
T ss_pred             HHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999855321 33459999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc---chHHHHHHHHHHHHHHHHHHh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~---w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +.|++ |..+......+++|||+|++|.++|++. ..++|..+...++..+....+   ||..-.+..+..++..+..++
T Consensus       114 l~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         114 LLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             HHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998 6678999999999999999999999999 899999999999999999999   999999988888888888888


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  237 (339)
                      ..+|.|+.++..++.                .+..++.+.++|+.|.+.+.++....++.++..++|.|+++++|.++.+
T Consensus       192 ~~~d~p~~r~~~~~~----------------~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~  255 (417)
T COG2223         192 GMNDVPEHRASVKPQ----------------LPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT  255 (417)
T ss_pred             HhCCChhhhcccccc----------------chhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Confidence            888877642211110                0135678889999999999999999999999999999999999999999


Q ss_pred             hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-------cchhHHHHHHHHHHH
Q 019567          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-------KSPAVAAVLITIALS  310 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  310 (339)
                      ++.+.....+.+.+.++++|+++||+|.+         +.+...+..++++.......       .+........+....
T Consensus       256 Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~---------rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~  326 (417)
T COG2223         256 AGLIAFLFPLIGALARPLGGWLSDRIGGR---------RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV  326 (417)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhhccch---------hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999986         33334444444444444333       334445555566667


Q ss_pred             Hhhhcccchhhhhh-hcccchhhhhhh
Q 019567          311 LSSFSQAGYLLNIQ-IAQDFSTALQIQ  336 (339)
Q Consensus       311 ~~~~~~~~~~~~~~-~~p~~~g~~~g~  336 (339)
                      +.+......+-... +.|++.|.+.|.
T Consensus       327 ~~G~GnGsvfk~Ip~if~~~~G~v~G~  353 (417)
T COG2223         327 FAGLGNGSVFKMIPVIFPKETGAVTGI  353 (417)
T ss_pred             HhccCcchheeechHHHHhhhhHHHHH
Confidence            77888888887777 888888888775

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=9.2e-32  Score=240.70  Aligned_cols=311  Identities=12%  Similarity=0.107  Sum_probs=235.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .+.+|.+.+|+|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+  ..+++++.+++.|++
T Consensus        33 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  110 (406)
T PRK15402         33 QPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI--LLAQSIEQFTLLRFL  110 (406)
T ss_pred             hcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999988  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+.+.|++|+++|.+.+++......+|..++|.+++.+.++.+||+.|++.++..++..+..+...||
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~  190 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPE  190 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999988889999999999999999999999888899999999999999998999999999888887766666556666


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      ++++.+++.+              .++...++++++++|+++...+..++..........+.|.++++.+|+++.+.+..
T Consensus       191 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~  256 (406)
T PRK15402        191 TAGRVGEKLS--------------LKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLL  256 (406)
T ss_pred             CCcccccccc--------------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHH
Confidence            5433211100              00111245778899999888777777766666777788999888889999888888


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-----cchhHHHHHHHHHHHHhhhcc
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-----KSPAVAAVLITIALSLSSFSQ  316 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  316 (339)
                      .....++.++++++.+++.||+++|         .....+.+...++..++...     .+.+.......+.....+...
T Consensus       257 ~~~~~~~~~~g~~~~g~l~~r~~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~  327 (406)
T PRK15402        257 QVPVFGALIAGNLTLARLTSRRPLR---------SLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLAN  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHh
Confidence            7777778889999999999999865         33344444444443333221     122222222222222233333


Q ss_pred             cchhhhhh-hcccchhhhhhhh
Q 019567          317 AGYLLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       317 ~~~~~~~~-~~p~~~g~~~g~q  337 (339)
                      +....... ..|+++|++++..
T Consensus       328 ~~~~~~~~~~~~~~~g~~~~~~  349 (406)
T PRK15402        328 AGLYRLTLFSSDVSKGTVSAAM  349 (406)
T ss_pred             hhHHHHHhhhccccccHHHHHH
Confidence            33333334 5567888877653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=8.2e-32  Score=240.81  Aligned_cols=245  Identities=14%  Similarity=0.141  Sum_probs=207.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .|.+|.+.+|++.|.++.++..+++.+++.+++++.|+++||+|||+++..+.++++++++++  ..++|++.++++|++
T Consensus        36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~--~~a~~~~~l~~~r~l  113 (413)
T PRK15403         36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT--LFTTSMTQFLIARFI  113 (413)
T ss_pred             ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+....++.|++|+++|++++++......+|..++|.+++.+.++.|||+.|++.++..++..+..++..||
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998877777788899999999999999999999999999999999999998999999999988877766655556677


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++..+              .+...+++++++|||+++...+..++.....+.+..+.|.++++.+|.++.+.++.
T Consensus       194 ~~~~~~~~~~--------------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~  259 (413)
T PRK15403        194 TVKRGAVPFS--------------AKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWT  259 (413)
T ss_pred             CccccCCCCC--------------hHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHH
Confidence            6542211100              00111256788999999998888888888888888899999999889999999998


Q ss_pred             hHHhHHHHHHHHhhhhhhhHH
Q 019567          242 SAVPWGTMAVSGYMAGKASDS  262 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~  262 (339)
                      ......+..++..+.+++.+|
T Consensus       260 ~~~~~~~~~i~~~l~~~~~~~  280 (413)
T PRK15403        260 QVPVFGAVIVANAIVARFVKD  280 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            877777777777776665543

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=6.2e-32  Score=240.71  Aligned_cols=244  Identities=16%  Similarity=0.171  Sum_probs=201.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|++++|+|+|+++.++..+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++  ..++|++.+++.|++
T Consensus        27 g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~l  104 (394)
T PRK03699         27 GMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL--MFSHSLALFSIAMFV  104 (394)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-hccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      +|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.+ ..+||+.|.+.+++.++..++.+.  +
T Consensus       105 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~  182 (394)
T PRK03699        105 LGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--S  182 (394)
T ss_pred             HHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--c
Confidence            9999999889999999999999999999999999999999999999887754 579999999988877665544432  2


Q ss_pred             CCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhH
Q 019567          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  240 (339)
                      +.|+.+++.+++            +++.    .++ ..+++++...+..++....++....|+|.|+++++|+|+.+.+.
T Consensus       183 ~~p~~~~~~~~~------------~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~  245 (394)
T PRK03699        183 EFPALGKHAPKA------------DKPV----AKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGN  245 (394)
T ss_pred             CCccccccCccc------------cCcc----ccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH
Confidence            222211110000            0000    011 12456677777777777778888899999999888999999999


Q ss_pred             hhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          241 FSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.+...++..+++++.++++||+++|
T Consensus       246 ~~~~~~~~~~ig~~~~g~l~dr~~~~  271 (394)
T PRK03699        246 LVSNFWMAYMVGMWIFSFIVRFFDLQ  271 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            99999999999999999999999876

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.8e-32  Score=243.92  Aligned_cols=324  Identities=13%  Similarity=0.126  Sum_probs=221.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++|+|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++  ..+++++.+++.|++
T Consensus        32 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  109 (405)
T TIGR00891        32 ALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC--GFAPGYITMFIARLV  109 (405)
T ss_pred             HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc--chHHHHHHHHHHHHHHHHHHhhc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      .|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+  ||+.|++.++..++. +......
T Consensus       110 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~  188 (405)
T TIGR00891       110 IGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNI  188 (405)
T ss_pred             HHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhC
Confidence            9999999999999999999999999999999999999999999999999988776  999998866554443 3334445


Q ss_pred             cCCCCCCCCCChHHH--HHHHhC-CccccccC-CC---ccHHHHhc-ch-hHHHHHHHHHhhHHHHHHHHHhhhhhhhhh
Q 019567          160 TNDPCNSPFVSKSEL--RLIQAG-KSDSVKKR-NP---PSLRHLLS-KL-PSWTVIIANITNNWGYFVLLSWMPIYFNTV  230 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~-~~---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (339)
                      ||++++++.+++++.  +..++. +.++..+. ..   ...++..+ ++ .+........+..........++|.|++++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (405)
T TIGR00891       189 PEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD  268 (405)
T ss_pred             CCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            665432211111100  000000 00000000 00   00111111 11 122233333344444556677889999888


Q ss_pred             hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhh-HhhhhhcccchhHHHHHHHHHH
Q 019567          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGV-SLLCLNYAKSPAVAAVLITIAL  309 (339)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  309 (339)
                      +|++..+.+.+.....++.++++++.+++.||+++|         +.+..+.....+ ........++.+.......+..
T Consensus       269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR---------KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ  339 (405)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch---------hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            899999999999999999999999999999999876         233333333322 2222222233332222212222


Q ss_pred             HHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          310 SLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       310 ~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+.....+.......  ..++++|+.+|..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  369 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFT  369 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHH
Confidence            222222333333344  5557888888764

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.3e-32  Score=247.97  Aligned_cols=257  Identities=21%  Similarity=0.219  Sum_probs=191.0

Q ss_pred             CcchhhhHhHhCCCccc-hhH-----HHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhH-
Q 019567            2 SVAVVPLAAKFGWSSSF-LGI-----VQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTAS-   74 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-~g~-----~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-   74 (339)
                      +...|.+.++++.+.++ .++     ..++..+++.+++++.|+++||+|||+++..+.++++++++++  ++++|++. 
T Consensus        36 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~--a~~~~~~~~  113 (490)
T PRK10642         36 GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCI--GLIPSYATI  113 (490)
T ss_pred             HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HhcccHHHH
Confidence            34678889998754432 222     2477789999999999999999999999999999999999999  55899864 


Q ss_pred             -------HHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhccchH
Q 019567           75 -------LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (339)
Q Consensus        75 -------~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~~w~~  139 (339)
                             +++.|+++|++.|..++...+++.|++|+|+|+++.++...+..+|..+++.+...+.        +++|||+
T Consensus       114 g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~  193 (490)
T PRK10642        114 GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI  193 (490)
T ss_pred             HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence                   8899999999999999999999999999999999999999888888888887665443        2579999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcc-hhHHH-HHHHHHhhHHHHH
Q 019567          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWT-VIIANITNNWGYF  217 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~  217 (339)
                      .|++.+++.++ .+......||+|++.+..++.+++     ..+..++++..++++++++ ++.+. .....++....++
T Consensus       194 ~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (490)
T PRK10642        194 PFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQG-----DREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYY  267 (490)
T ss_pred             HHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhh-----ccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99997765554 333445567776532111110000     0000011123356666653 23222 2233344566778


Q ss_pred             HHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       218 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ....|+|.|+++.+|++..+.+.......++..++.++.|+++||+|||
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  316 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR  316 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            8889999999887899888877777777788889999999999999976

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=2.7e-31  Score=236.67  Aligned_cols=268  Identities=16%  Similarity=0.145  Sum_probs=218.2

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      +.+|.+.+|+|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+.+  ..++|++.+++.|+++
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~--~~~~~~~~~~~~~~l~  101 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLC--SLAETSSLFLAGRFLQ  101 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999988  5588999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      |++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.++..++..+......||+
T Consensus       102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999989999999999999999999999999999999999999999988889999999999888877777666666765


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  242 (339)
                      ++++++.+                ++..+..++.+++|+++...+...+..........+.|.++++.+|+++.+.+.+.
T Consensus       182 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  245 (392)
T PRK10473        182 RPARAPAA----------------SSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIM  245 (392)
T ss_pred             CCcccCCc----------------cchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHH
Confidence            43321110                00112345677888877665555554444555667778888888899999999988


Q ss_pred             HHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccc
Q 019567          243 AVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS  297 (339)
Q Consensus       243 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (339)
                      ....+..+++.++.+++.||+++|         .....+..+..++..++...++
T Consensus       246 ~~~~~~~i~~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~  291 (392)
T PRK10473        246 ALTAGVSMTVSFSTPFALGIFKPR---------TLMLTSQVLFLAAGITLALSPS  291 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999875         3444555555555554444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=2.5e-31  Score=240.73  Aligned_cols=263  Identities=18%  Similarity=0.249  Sum_probs=205.4

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--hcchhHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVRA   80 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~   80 (339)
                      +..|.+.++ |+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+++..  +++++.+++.|+
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  128 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  128 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence            467888888 99999999999999999999999999999999999999999999999988874421  247888899999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHH-HHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV-VGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +.|++.+...+.....+.|++|+|+|++++++++.+.++|.. .+|+++..+....+||+.|++.++++++..++..++.
T Consensus       129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~  208 (452)
T PRK11273        129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMM  208 (452)
T ss_pred             HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999998888888999999999999999999999999875 4555444444445999999999888877777777777


Q ss_pred             cCCCCCCCCCChHHHHHH-HhC-CccccccCCCcc--HHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCcc
Q 019567          160 TNDPCNSPFVSKSELRLI-QAG-KSDSVKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  235 (339)
                      ||+|++....++++.+.. .+. +.+++++.+..+  .+.++|+|.+|...+..++.....+....|+|.|++++.|++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~  288 (452)
T PRK11273        209 RDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  288 (452)
T ss_pred             cCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            877665322222111100 000 000001111111  1336788999998888888888888888999999999889999


Q ss_pred             chhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .+++....+..++.+++.++.|+++||++++
T Consensus       289 ~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        289 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999888888889999999999999999543

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=4.6e-31  Score=240.71  Aligned_cols=325  Identities=12%  Similarity=0.089  Sum_probs=240.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|.|+.+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.+.+  ..+++++.+++.|++
T Consensus        30 ~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  107 (471)
T PRK10504         30 NTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFC--ALSGTLNELLLARVL  107 (471)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999888  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+....++.|++|+++|+++.++.....++|..++|.+++.+.++.+||+.|.+..+...+..+......|+
T Consensus       108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  187 (471)
T PRK10504        108 QGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN  187 (471)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999888777766666656565


Q ss_pred             CCCCCCCCChHHHHH-----------HHhCCc------------------------cccccCCCccHHHHhcchhHHHHH
Q 019567          162 DPCNSPFVSKSELRL-----------IQAGKS------------------------DSVKKRNPPSLRHLLSKLPSWTVI  206 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~-----------~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~  206 (339)
                      .+.+.++.+......           .+..+.                        ++++.+++....+++|||+++...
T Consensus       188 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  267 (471)
T PRK10504        188 YTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGL  267 (471)
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHH
Confidence            543332222111000           000000                        011111112223588999998888


Q ss_pred             HHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhh
Q 019567          207 IANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG  286 (339)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  286 (339)
                      ...++..........+.|.|+++.+|.++.+.++......++.+++.++.+++.||+++|         +.+..+..+.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~---------~~~~~~~~~~~  338 (471)
T PRK10504        268 AGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR---------RVLVATTLGLA  338 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch---------HHHHHHHHHHH
Confidence            888888777777778899999987899999999998888888888889999999999875         44445555444


Q ss_pred             hHhhhhhccc--chhH-HHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          287 VSLLCLNYAK--SPAV-AAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       287 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      +...++....  +... ............+...+.......  ..++.+|..++..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  394 (471)
T PRK10504        339 LVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLL  394 (471)
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHH
Confidence            4444333321  2111 111122222333333344444444  5567777776654

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=4.2e-31  Score=237.45  Aligned_cols=310  Identities=12%  Similarity=0.093  Sum_probs=226.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~   80 (339)
                      ++..|.+++++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++++++.. ..++|++.++++|+
T Consensus        46 ~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~  125 (438)
T PRK10133         46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999987521 34789999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-----------------h---------
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-----------------T---------  134 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-----------------~---------  134 (339)
                      ++|+|.+...+..+.++.|+.|+++|.+.+++.+..+.+|..+++.+++.+..                 .         
T Consensus       126 l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~  205 (438)
T PRK10133        126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLV  205 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHH
Confidence            99999999999999999998877777778999999999999999998875430                 0         


Q ss_pred             ccchHHHHHHHHHH-HHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhH
Q 019567          135 IGISGPFILFSSLG-LLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (339)
Q Consensus       135 ~~w~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (339)
                      .+||++|+....+. ++..+......||.+++++.    +          +++++...+.++++++|.++...+..++..
T Consensus       206 ~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~----~----------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~  271 (438)
T PRK10133        206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS----D----------AKQGSFSASLSRLARIRHWRWAVLAQFCYV  271 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc----c----------ccccchhhhHHHHHhCchHHHHHHHHHHHH
Confidence            25677776544333 33222222223332211100    0          011111234578889999888777777777


Q ss_pred             HHHHHHHHhhhhhh-hhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          214 WGYFVLLSWMPIYF-NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       214 ~~~~~~~~~~~~~l-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      ...+....|.+.|+ ++.+|+++.+++.......++.++++++.+++.||+++|         +.+..+.++....+.+.
T Consensus       272 ~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~---------~~l~~~~~~~~~~~~~~  342 (438)
T PRK10133        272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLIS  342 (438)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHH
Confidence            88887888999885 566899999999999999999999999999999999876         33344444433333333


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhhh
Q 019567          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQI  335 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g  335 (339)
                      ...++. .....+.+.+.+.+...+...+... ..|++.+..++
T Consensus       343 ~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~  385 (438)
T PRK10133        343 AFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSS  385 (438)
T ss_pred             HHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchh
Confidence            333332 2233344445555666666666555 56666655554

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=3.8e-31  Score=234.32  Aligned_cols=306  Identities=15%  Similarity=0.044  Sum_probs=221.3

Q ss_pred             cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHH-HHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAW-GVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      |.+|. +++|+|.|+.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.+++  +.++|++.+++.|+
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~   95 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF--AWNRNYFLLLVLGV   95 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHH
Confidence            44554 678999999999999999999999999999999999999887654 556666677777  55899999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHH--HHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASA--IGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      ++|.+.+...|...+++.|+.|+++|++.  .+....+.++|..++|++++.+.+..+||+.|++.++..++..+..++.
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  175 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLF  175 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99988888888888999999887777654  6888888999999999999999999999999999988877777666666


Q ss_pred             ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchh
Q 019567          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (339)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  238 (339)
                      .||.|+++++++                  ...+.++.+++|+++......++..........+.|.|+++++|.++.+.
T Consensus       176 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  237 (375)
T TIGR00899       176 LPSYPRGAPGAL------------------TRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLA  237 (375)
T ss_pred             CCCcccCccccc------------------CcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence            777654322110                  01123446677777766655555555555566788999988889999999


Q ss_pred             hHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccc
Q 019567          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (339)
                      +.+........+++.++.|++.||+++|         +....+.+...+....+...++.+.......+.....+...+.
T Consensus       238 g~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  308 (375)
T TIGR00899       238 GLMMGTAAGLEIPFMLLAGYLIKRFGKR---------RLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGI  308 (375)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888777777788889999999999876         2333344444444434333334333333323333333333333


Q ss_pred             hhhhhh-hcccchhhhhhhh
Q 019567          319 YLLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       319 ~~~~~~-~~p~~~g~~~g~q  337 (339)
                      ...... ..|++++..++..
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~  328 (375)
T TIGR00899       309 GMLYFQDLMPGRAGAATTLY  328 (375)
T ss_pred             HHHHHHHhCcchhhHHHHHH
Confidence            444444 6677777666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2e-31  Score=240.08  Aligned_cols=256  Identities=16%  Similarity=0.196  Sum_probs=197.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+++|+|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++  +.+++++.++++|++
T Consensus        38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l  115 (426)
T PRK12307         38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS--GLASGVIMLTLSRFI  115 (426)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+....++.|++|+|+|++++++...+.++|.++++.+.+.+.+..+||+.|++.....++ ........||
T Consensus       116 ~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~  194 (426)
T PRK12307        116 VGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPE  194 (426)
T ss_pred             HHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999999999999999875433222 2222212233


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHH---HhhHHHHHHHHHhhhhhhhhhhCCccchh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIAN---ITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  238 (339)
                      ++++.++    +.+ .+.++.++..+....++++++++|.++......   +......+....++|.|+++ .|.++.+.
T Consensus       195 ~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~  268 (426)
T PRK12307        195 SKEWEEA----KLS-GKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVV  268 (426)
T ss_pred             ChHHHHh----hhh-ccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence            3211100    000 000000001111122567888888776543322   22223334467789999988 59999899


Q ss_pred             hHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          239 AWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.......+++++++++.|++.||+++|
T Consensus       269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~  296 (426)
T PRK12307        269 SNLMTAAAFGTVLGNIVWGLCADRIGLK  296 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            9888888999999999999999999875

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=7.6e-31  Score=230.65  Aligned_cols=264  Identities=15%  Similarity=0.157  Sum_probs=209.5

Q ss_pred             CCcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +++.+|.+++|+|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .  +++.+.+++.|+
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~   95 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S--APGTALLFAGTA   95 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H--hccHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999998888877765 2  688999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.|++.+...+....++.|++| ++|++++++.+...++|..+++.+++.+.++.  +||+.|...++..++....   .
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~---~  171 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA---W  171 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---H
Confidence            9999999888888889999986 68999999999999999999999998888765  3999998776654443222   2


Q ss_pred             ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchh
Q 019567          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (339)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  238 (339)
                      .|+.+++++.                +++..+...++.+|+|.++...+..++....++....++|.|+++ .|.+..+.
T Consensus       172 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~  234 (355)
T TIGR00896       172 IPQVRRRVAA----------------NQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATA  234 (355)
T ss_pred             hhhhccccCC----------------CCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence            3333221110                000111234567888988887777777777788888999999987 69999999


Q ss_pred             hHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhccc
Q 019567          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK  296 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (339)
                      +.+.+...++.++++++.|++.||+++|        +.....+..+.+++...+...+
T Consensus       235 g~~~~~~~~~~i~~~~~~g~l~dr~~~~--------~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T TIGR00896       235 GSLLALMQLAQAASALLIPALARRVKDQ--------RGIVAVLAVLQLVGLCGLLFAP  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhccc--------hHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999654        2444455555555554444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=9.9e-31  Score=233.69  Aligned_cols=309  Identities=16%  Similarity=0.132  Sum_probs=228.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .|..|++++|+|.|+++.++..+++.++..+++++.|+++||+|||+.+..+..+..++.+++  ..+++++.+++.|++
T Consensus        26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  103 (401)
T PRK11043         26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM--LWVESAAQLLVLRFV  103 (401)
T ss_pred             HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999888  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.++.|||+.|++.++..++..+..+.. +|
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~  182 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL-KP  182 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            99998888888889999999999999999999999999999999999999999999999999888877766555443 43


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++  +                +.+.++++++|+|+++...+.........+....+.|.++++ +|+++.+.+..
T Consensus       183 ~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~  243 (401)
T PRK11043        183 SKKARKQ--S----------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLS  243 (401)
T ss_pred             CCCcccc--c----------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHH
Confidence            3321110  0                011246778888888776666555566666777888988876 69999999988


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhc--ccchhHHHHHHHHHHHHhhhcccch
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .....++.++++++.+++.||+++|+.      .........+..........  .++.+.......+.....+...+..
T Consensus       244 ~~~~~~~~~~g~~~~~~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (401)
T PRK11043        244 YVPQTIAFLVGGYGCRAALQKWGGEQL------LPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIV  317 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHH------HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888899999999999876510      11111222222222222221  2232222222223333333444444


Q ss_pred             hhhhh-hcccchhhhhhhhc
Q 019567          320 LLNIQ-IAQDFSTALQIQQE  338 (339)
Q Consensus       320 ~~~~~-~~p~~~g~~~g~q~  338 (339)
                      ..... ..|+++|..+|.++
T Consensus       318 ~~~~~~~~~~~~g~~~g~~~  337 (401)
T PRK11043        318 VAQALRPFPQATGKAAALQN  337 (401)
T ss_pred             HHHHhhhCcccChHHHHHHH
Confidence            33333 55788888887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=3.3e-30  Score=229.77  Aligned_cols=309  Identities=15%  Similarity=0.145  Sum_probs=231.3

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .|.+|.+.+|+|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+  ..++|++.+++.|++
T Consensus        28 ~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~  105 (394)
T PRK11652         28 VPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA--LFAHSLTVLIAASAI  105 (394)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999988  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+....+..|.+++++++++.++.+.+..++..++|.+++.+.+..|||+.|++.++..++..+......||
T Consensus       106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        106 QGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999888888888999999999999999999999999999999999999998999999999888777666555556676


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++..  +               ...++++++++|+++...+..+........+..+.+.++++.+|+++.+.+.+
T Consensus       186 ~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  248 (394)
T PRK11652        186 TRPADARRT--R---------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSIL  248 (394)
T ss_pred             cCccccchh--H---------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHH
Confidence            543321110  0               11246678888888776666665555666667778889988889999888888


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhc--ccchhHHHHHHHHHHHHhhhcccch
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .....++.+++..+.+++.||.+++        ......+.....+.......  ..+.+.......+.....+...+..
T Consensus       249 ~~~~~~~~~~g~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (394)
T PRK11652        249 FILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLA  320 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777777788888888888887632        22222222222222222221  1223333333333333344444444


Q ss_pred             hhhhh-hcccchhhhhhhh
Q 019567          320 LLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       320 ~~~~~-~~p~~~g~~~g~q  337 (339)
                      ..... ..|+++|...+.+
T Consensus       321 ~~~~~~~~~~~~g~~~~~~  339 (394)
T PRK11652        321 TSGAMEPFPYLAGTAGALL  339 (394)
T ss_pred             HHHHHhhccccchHHHHHH
Confidence            55445 6678888877654

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=1.5e-30  Score=232.25  Aligned_cols=250  Identities=14%  Similarity=0.084  Sum_probs=198.2

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hh-hcchhHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AA-THSTASLLAVRAF   81 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~r~l   81 (339)
                      .+|++.+|+|.|+++.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.+ .. .+|++.+++.|++
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i  114 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGI  114 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHH
Confidence            456777899999999999999999999999999999999999999999999999888765521 12 3578888999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHH-HHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGN-VVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      +|++.+...+.....+.|++|+|+|++++|+.+.+.++|. .++|.+++.+.+..||+..++.......+..++..+..+
T Consensus       115 ~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  194 (402)
T TIGR00897       115 RGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK  194 (402)
T ss_pred             HHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999988888888889999999999999999999999997 689999999988889776655544433333333444444


Q ss_pred             CCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhH
Q 019567          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  240 (339)
                      +.+++++.+++ +           +.++....+++++|+|+++...+..++.....+...++.|.|+++ +|++..+.+.
T Consensus       195 ~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~  261 (402)
T TIGR00897       195 DIFTPQHMQTR-E-----------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQ  261 (402)
T ss_pred             CCCCcccccCC-c-----------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHH
Confidence            43221111000 0           001111245678899999988888888888888889999999877 7999999998


Q ss_pred             hhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          241 FSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.....+++.++++..|+++||+++|
T Consensus       262 ~~~~~~~~~~ig~~~~g~l~dr~~~~  287 (402)
T TIGR00897       262 IWGTFFFTNIVFNVIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            88888899999999999999999875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=4.1e-31  Score=239.11  Aligned_cols=327  Identities=16%  Similarity=0.081  Sum_probs=230.2

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH-HHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLA-VRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~   80 (339)
                      ++..|++.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++.+  +.+++++.+++ .|+
T Consensus        39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~  116 (455)
T TIGR00892        39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA--SFSSNVIELYLTAGF  116 (455)
T ss_pred             hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH--HHhhhHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999998  55788888865 579


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      ++|++.+...+....++.++++ ++|++++++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..++..+
T Consensus       117 l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       117 ITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999877788889999995 889999999999999999999999999999999999999999887766555444444


Q ss_pred             CCCCCCCCCCh-HHHHHHHhCCcc---c--cccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCc
Q 019567          161 NDPCNSPFVSK-SELRLIQAGKSD---S--VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (339)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  234 (339)
                      +.++++....+ ++....+...++   +  .++..+....+++++|+++......++.....+....++|.|+++ .|++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s  274 (455)
T TIGR00892       196 VGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVD  274 (455)
T ss_pred             CCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCC
Confidence            32211100000 000000000000   0  000001111257789999888887777777777788899999987 6999


Q ss_pred             cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhh
Q 019567          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (339)
                      ..+++.+.++.+++.++++++.|++.||...+..     ++..+..+.+..+++.++....++.+...+..++.+...+.
T Consensus       275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~  349 (455)
T TIGR00892       275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH-----VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGS  349 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH-----HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhch
Confidence            9999999999999999999999999997321100     22333333444344444444444444333333333333333


Q ss_pred             cccchhhhhh--hcccchhhhhhhh
Q 019567          315 SQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       315 ~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      ..+.......  ..++++|...|..
T Consensus       350 ~~~~~~~~~~~~~~~~~~g~~~g~~  374 (455)
T TIGR00892       350 VGALLFEVLMDLVGAQRFSSAVGLV  374 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHhhHHhHH
Confidence            3333334433  5556777776654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.1e-30  Score=231.09  Aligned_cols=293  Identities=15%  Similarity=0.141  Sum_probs=215.8

Q ss_pred             CcchhhhHh-HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh---hhcchhHHHH
Q 019567            2 SVAVVPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLA   77 (339)
Q Consensus         2 ~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~   77 (339)
                      +++.+.+.+ |+|+|++|.+++.+++.+++.++.++.|++.||+|.|+++.++.+++++.++..+++   ..+|++.+++
T Consensus        54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli  133 (462)
T PRK15034         54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIV  133 (462)
T ss_pred             HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHH
Confidence            456777766 899999999999999999999999999999999999999999999999999988542   1289999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh-----h-------------hccchH
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-----S-------------TIGISG  139 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-----~-------------~~~w~~  139 (339)
                      .|++.|++ +..++.....+++|+|+|+||+++|+.....++|..+++++...+.     +             ..+||.
T Consensus       134 ~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~  212 (462)
T PRK15034        134 IALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLAN  212 (462)
T ss_pred             HHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHH
Confidence            99999998 7788999999999999999999999997777777776666554432     2             334788


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHH
Q 019567          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVL  219 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (339)
                      ++++..++.++..++.++..++.++++                     ....+.++++|+|+.|...+.+++.+..+.++
T Consensus       213 ~~~~~~~~~iv~~i~~~~~~~~~~~~~---------------------~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~  271 (462)
T PRK15034        213 AAWIWVPLLAIATIAAWSGMNDIASSR---------------------ASIADQLPVLQRLHLWLLSLLYLATFGSFIGF  271 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccc---------------------cCHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            888888887777777666655543211                     11124677899999999999999999999999


Q ss_pred             HHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHh-hhhhccc--
Q 019567          220 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSL-LCLNYAK--  296 (339)
Q Consensus       220 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--  296 (339)
                      ..++|.|+++.+  +.........+..+...+.++++|+++||+|++         +++..+++...++. ..+...+  
T Consensus       272 s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~---------~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        272 SAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGV---------RVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch---------HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999998854  333333333344567888999999999999976         33334443333332 2122222  


Q ss_pred             ---chhHHHHHHHHHHHHhhhcccchhhhhh-hcc
Q 019567          297 ---SPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQ  327 (339)
Q Consensus       297 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p  327 (339)
                         +.+.....++..+...+...+...-... ..|
T Consensus       341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~  375 (462)
T PRK15034        341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR  375 (462)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh
Confidence               2233333333444555666666665544 445

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=5.3e-31  Score=235.03  Aligned_cols=324  Identities=22%  Similarity=0.273  Sum_probs=232.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++.  ..+++++.+++.|++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  114 (398)
T TIGR00895        37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLC--ALATNVTQLLILRFL  114 (398)
T ss_pred             HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHccchHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999998888  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+||+.|++.++..++..+......||
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  194 (398)
T TIGR00895       115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE  194 (398)
T ss_pred             HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999877777666666666777


Q ss_pred             CCCCCCCCChHHH-H---HHHhC-Ccc-----ccccC---CCcc-HHHHhcc---hhHHHHHHHHHhhHHHHHHHHHhhh
Q 019567          162 DPCNSPFVSKSEL-R---LIQAG-KSD-----SVKKR---NPPS-LRHLLSK---LPSWTVIIANITNNWGYFVLLSWMP  224 (339)
Q Consensus       162 ~~~~~~~~~~~~~-~---~~~~~-~~~-----~~~~~---~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  224 (339)
                      +++...++++++. +   ....+ ..+     ++++.   .... .+.++++   +..+...+..++.....+....+.|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (398)
T TIGR00895       195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP  274 (398)
T ss_pred             CChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543211111110 0   00000 000     00000   1111 2223332   3344444555566666777778888


Q ss_pred             hhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHH
Q 019567          225 IYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL  304 (339)
Q Consensus       225 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (339)
                      .+. +..|.++.+.+.......++.++++++.+++.||+++|         .......+.......+.....+.+.....
T Consensus       275 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (398)
T TIGR00895       275 KLM-VELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR---------VTALLLLLGAVFAVLVGSTLFSPTLLLLL  344 (398)
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH---------HHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence            554 44799999999999999999999999999999999864         23223333333333332223344333333


Q ss_pred             HHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          305 ITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .++.....+...+.......  ..++++|+..|..
T Consensus       345 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  379 (398)
T TIGR00895       345 GAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWA  379 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            33344444444455555555  5557788877754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.1e-30  Score=243.88  Aligned_cols=324  Identities=12%  Similarity=0.114  Sum_probs=232.4

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++++|.+.++++++..+.+++.+++.++..++++++|+++||+|||+++++++++.+++++++  +++++++.++++|++
T Consensus       187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~--afa~s~~~llv~R~l  264 (742)
T TIGR01299       187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFS--SFVQGYGFFLFCRLL  264 (742)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-------------ccchHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------------IGISGPFILFSSLG  148 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-------------~~w~~~f~~~~~~~  148 (339)
                      .|++.+...+...+++.|++|+++|++.+++...++.+|.++++.++..+...             .+||+.+++.++.+
T Consensus       265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~  344 (742)
T TIGR01299       265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPC  344 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988776643             35899888877665


Q ss_pred             HHHHHHHHhhccCCCCCCCCCChHHH--HH---HH--------------------hCCccc-----cccCCC--------
Q 019567          149 LLWLSTWTSKVTNDPCNSPFVSKSEL--RL---IQ--------------------AGKSDS-----VKKRNP--------  190 (339)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~--------------------~~~~~~-----~~~~~~--------  190 (339)
                      ++. ++..++.||+|++.....+.++  +.   ..                    ....++     +++...        
T Consensus       345 ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (742)
T TIGR01299       345 VFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVR  423 (742)
T ss_pred             HHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhh
Confidence            554 4556678999875221111100  00   00                    000000     000000        


Q ss_pred             ---------ccHHHHhcc---hhHHHHHHHHHhhHHHHHHHHHhhhhhhhhh----h-----------------CCccc-
Q 019567          191 ---------PSLRHLLSK---LPSWTVIIANITNNWGYFVLLSWMPIYFNTV----F-----------------NVNLK-  236 (339)
Q Consensus       191 ---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~-----------------g~~~~-  236 (339)
                               .+++++++.   ++.+.+.+.+++..++++++..|+|.++++.    +                 +++.+ 
T Consensus       424 ~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (742)
T TIGR01299       424 ALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLEN  503 (742)
T ss_pred             hhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhh
Confidence                     023444443   2456677888889999999999999876441    0                 00000 


Q ss_pred             --------------------------------------------------------------------------------
Q 019567          237 --------------------------------------------------------------------------------  236 (339)
Q Consensus       237 --------------------------------------------------------------------------------  236 (339)
                                                                                                      
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  583 (742)
T TIGR01299       504 QIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGC  583 (742)
T ss_pred             hhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCcc
Confidence                                                                                            


Q ss_pred             ------------hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHH
Q 019567          237 ------------QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVL  304 (339)
Q Consensus       237 ------------~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (339)
                                  .......+..++.+++.++.|+++||+|||         .++..+.++.+++.+++.+.++.....+.
T Consensus       584 ~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr---------~~l~~~~~lsai~~ll~~~~~s~~~ll~~  654 (742)
T TIGR01299       584 PIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL---------RMLAGSMVLSCISCFFLSFGNSESAMIAL  654 (742)
T ss_pred             CccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence                        012234456678899999999999999976         56677777888777777766655444433


Q ss_pred             HHHHHHHhhhcccchhhhhh-hcc-cchhhhhhhh
Q 019567          305 ITIALSLSSFSQAGYLLNIQ-IAQ-DFSTALQIQQ  337 (339)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~-~~p-~~~g~~~g~q  337 (339)
                      .++..++.+...+....... ..| +.||+.+|..
T Consensus       655 ~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~  689 (742)
T TIGR01299       655 LCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFL  689 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            33333333444444444445 444 6788877754

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.5e-33  Score=236.80  Aligned_cols=326  Identities=18%  Similarity=0.179  Sum_probs=241.1

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      ..+.+++.||+++++.|++++.+.+.+.+++|+.|+++||+.||+++.+|..+|+++.++++  ++..+|+++++|.+.|
T Consensus        55 v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~--fs~~Fwq~~l~R~~vG  132 (493)
T KOG1330|consen   55 VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG--FSNHFWQVLLCRGFVG  132 (493)
T ss_pred             hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence            46788999999999999999999999999999999999999999999999999999999994  4899999999999999


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      +|.+...|.++++++|.+|+++|++++++++.+.++|..+|.+.+..+.+..+ |||.|++.++++++..++.+++.+|+
T Consensus       133 iGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  133 IGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             cchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            99999999999999999999999999999999999999999999999988766 99999999999999999999888887


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhh---hhCCccchhh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNT---VFNVNLKQAA  239 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~  239 (339)
                      +++.++..+.+.+      .+++.....++.+.+.++|.+....+......+....+..|.|.+...   ..|.+..+..
T Consensus       213 ~rga~~~~~~~~~------~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~  286 (493)
T KOG1330|consen  213 ERGARDEVDGENK------MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATL  286 (493)
T ss_pred             ccccccccccCCc------CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccch
Confidence            7643222111110      011222333455666676766665555555555555555666665543   2356666777


Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHH--HHhhhhhhHhhhhhccc--chhHHHHHHHHHHHHhhhc
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS--IGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFS  315 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  315 (339)
                      .+..+...++.+|.+.+|.++||+.++.++....|...+.  .+....+..+.+.....  +.+..++++.++.......
T Consensus       287 ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~  366 (493)
T KOG1330|consen  287 IFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFN  366 (493)
T ss_pred             hhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence            7778888899999999999999987764443333322222  22223333333333322  2333444444444444444


Q ss_pred             ccchhhhhh--hcccchhhhhhhh
Q 019567          316 QAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       316 ~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+...-...  +.|++|.+++..|
T Consensus       367 ~a~n~~i~l~vV~p~~Rt~a~a~~  390 (493)
T KOG1330|consen  367 WATNNPIFLEVVPPSRRTTAYALD  390 (493)
T ss_pred             cccccceeeEecCcccccHHHHHH
Confidence            444444444  7788888887765

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.1e-30  Score=235.65  Aligned_cols=262  Identities=19%  Similarity=0.258  Sum_probs=205.6

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--hcchhHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVRAF   81 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l   81 (339)
                      ..|.+++ +|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.++..  .++++.+.+.|++
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  127 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL  127 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            4566665 699999999999999999999999999999999999999999999999888773311  2467788899999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh-hhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      .|++.+..++.....+.|++|+++|++++++.+.+.++|..+++.+.+... ++.+||..|++.++++++..+..++..|
T Consensus       128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999988876544 4579999999999888887766677777


Q ss_pred             CCCCCCCCCChHHHHH-HHhCCccccccC--CCc-cHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          161 NDPCNSPFVSKSELRL-IQAGKSDSVKKR--NPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      |+|++.+..+.++.+. ..++..++++++  .+. ..+.++|++.+|...+..++.....++..+|+|.|+++..|+++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~  287 (438)
T TIGR00712       208 DTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD  287 (438)
T ss_pred             CCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh
Confidence            7665432111110000 000000000000  011 123467889999888887777777788889999999998899999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +++....+..+.+++++++.|++.||++++
T Consensus       288 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       288 KSSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999998889999999999999999999654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.98  E-value=7.6e-30  Score=227.41  Aligned_cols=296  Identities=13%  Similarity=0.058  Sum_probs=222.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~   80 (339)
                      ++++|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.+++.. ...+|++.+++.|+
T Consensus        23 ~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~  102 (410)
T TIGR00885        23 NPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLF  102 (410)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999888632 22468999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh--------------------------h
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--------------------------T  134 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~--------------------------~  134 (339)
                      +.|+|.|...+..+.++.+..|+++|++.+++.+...++|..++|.+++.+..                          .
T Consensus       103 l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (410)
T TIGR00885       103 ILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDL  182 (410)
T ss_pred             HHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887742                          2


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhH
Q 019567          135 IGISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (339)
Q Consensus       135 ~~w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (339)
                      .+||++|++.+++.++..+...+. .||.++  +   ++            ++.....+.++++|+|+++...+..++..
T Consensus       183 ~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~~f~yv  245 (410)
T TIGR00885       183 ASVQTPYMIIGAVVLAVALLIMLTKMPALNH--S---DA------------KQISFSASLSRLARIRHYREGVIAQFFYV  245 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--c---cc------------ccccchhhHHHHHhChhHHHHHHHHHHHH
Confidence            469999999888777655444322 222111  0   00            00011124567889999998888888888


Q ss_pred             HHHHHHHHhhhhhhhhhh-CCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          214 WGYFVLLSWMPIYFNTVF-NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      ..+....++++.|.++.. +.+...++...........+++++++++.||+++|         +.+..+.++..++.++.
T Consensus       246 g~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~---------~~l~i~~~~~~~~~ll~  316 (410)
T TIGR00885       246 GVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH---------KVLMAYAIIGMALCLGS  316 (410)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHHHHH
Confidence            888888899999997632 33444445555566677889999999999999765         34555555555555555


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcccchhhhhh
Q 019567          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ  324 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (339)
                      ...++......+... ..+.+..++...+...
T Consensus       317 ~~~~~~~~~~~l~~~-glf~s~~fp~i~sl~~  347 (410)
T TIGR00885       317 IFAGGHVGLYCLTLC-SAFMSLMFPTIYGIAL  347 (410)
T ss_pred             HHcCChHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            555554433333333 3444444455555554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.98  E-value=1.8e-30  Score=230.73  Aligned_cols=309  Identities=16%  Similarity=0.117  Sum_probs=219.3

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      ..+.+.+|++.++.+.+++.+.+.+++.+.+++.|+++||+|||+++..+.++.+++++.+  ..+++.   ++.|+++|
T Consensus        25 ~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~--~~~~~~---~~~r~l~G   99 (393)
T PRK11195         25 AAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM--LFGIHP---LLAYGLVG   99 (393)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH--HHHHHH---HHHHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999988887  334553   78899999


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCC
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  163 (339)
                      ++.+...|...+++.|++|+|+|++++++.+....+|..+||.+++.+.+. .|+..+.+.+...++. .+.....||++
T Consensus       100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999999885 4777777766544333 33445567655


Q ss_pred             CCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhH
Q 019567          164 CNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSA  243 (339)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  243 (339)
                      ++++..++++....+         +....++.++++|.+.......++............|.|+++.+|.++.+.|.+..
T Consensus       178 ~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~  248 (393)
T PRK11195        178 ARRPGQSWNPIALLR---------DFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQA  248 (393)
T ss_pred             ccccccCCCHHHHHH---------HHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence            432211111100000         00112456778887766555544445555566677788888889999999999999


Q ss_pred             HhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhh
Q 019567          244 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNI  323 (339)
Q Consensus       244 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (339)
                      ...++.+++++..+++.||.+++         .....+.. .+....++...++.+.......+.+...+.......+..
T Consensus       249 ~~~~g~i~g~~~~~~l~~~~~~~---------~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~  318 (393)
T PRK11195        249 VVAIGIAVGAGAAARLVTLETVL---------RVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALL  318 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccc---------chHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            99999999999999998876544         23333332 223333333333333333333333334444445555555


Q ss_pred             h-hcccc--hhhhhhhhc
Q 019567          324 Q-IAQDF--STALQIQQE  338 (339)
Q Consensus       324 ~-~~p~~--~g~~~g~q~  338 (339)
                      + ..|++  +|.+.+..+
T Consensus       319 q~~~~~~~~~g~~~a~~~  336 (393)
T PRK11195        319 QHRGHVLVGAGHSIAVQN  336 (393)
T ss_pred             HhhCcccccchhHHHHHh
Confidence            6 66654  477765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=9.3e-31  Score=233.50  Aligned_cols=255  Identities=24%  Similarity=0.327  Sum_probs=225.9

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~   87 (339)
                      +.+|.+....+.+.+.+++.+++++++++++.+.||++..+.+....+++++-.++.  +..+|++.+++.|++.|+.++
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~--~~~~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLT--AAVHSFPGLIALRFLLGLFES  149 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHhc
Confidence            458889999999999999999999999999999999999999999999998888777  458999999999999999999


Q ss_pred             cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh------hhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML------STIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      ..+|....+++.||.+++|++.++++.+..++|.++|+.++..+.      ...||||.|++.++++++..++.++++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            999999999999999999999999999999999999999998863      35689999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHH----H-hCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          162 DPCNSPFVSKSELRLI----Q-AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      +|++.+..+++|+...    + .+..+.+++.+...+++.+++|.+|...+..++.....+++.+|+|.|+++..|++..
T Consensus       230 ~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~  309 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSEL  309 (495)
T ss_pred             ChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChH
Confidence            9997766666654322    1 1111222224556788999999999999999999999999999999999996679999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHH
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLI  264 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~  264 (339)
                      ++..+.....++++++.++.|.++||.+
T Consensus       310 ~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  310 QANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             HhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999963

>PRK09952 shikimate transporter; Provisional

Probab=99.98  E-value=9.8e-30  Score=229.25  Aligned_cols=244  Identities=16%  Similarity=0.154  Sum_probs=180.5

Q ss_pred             hHhHh--CCCccchhHHH-----HHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchh-------
Q 019567            8 LAAKF--GWSSSFLGIVQ-----SSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA-------   73 (339)
Q Consensus         8 i~~~~--~~s~~~~g~~~-----s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~-------   73 (339)
                      +.+++  +.++. .++..     ++..++..+++++.|+++||+|||+++..+.++++++++++  ++++|+.       
T Consensus        49 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  125 (438)
T PRK09952         49 FNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI--GLLPSFSTIGWWAP  125 (438)
T ss_pred             HHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH--hcCCcHHHHHHHHH
Confidence            45555  66665 45554     34456677899999999999999999999999999999999  5588886       


Q ss_pred             -HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhccchHHHHHH
Q 019567           74 -SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISGPFILF  144 (339)
Q Consensus        74 -~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~~w~~~f~~~  144 (339)
                       .+++.|+++|++.|..++....++.|++|+|+|++..+..+.+..+|..+++.+...+.        +.+|||++|++.
T Consensus       126 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~  205 (438)
T PRK09952        126 VLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFS  205 (438)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHH
Confidence             58899999999999999999999999999999999999999999999999887776654        257999999988


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHH-HHHhhHHHHHHHHHhh
Q 019567          145 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVII-ANITNNWGYFVLLSWM  223 (339)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  223 (339)
                      +++.++. .......||+|++.+.     ++   + .+  +++++....+.++++|+.+.... ..++.....+....|.
T Consensus       206 ~~~~l~~-~~l~~~~~es~~~~~~-----~~---~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (438)
T PRK09952        206 IVLVLIA-LWVRNGMEESAEFEQQ-----QH---E-QA--AAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFA  273 (438)
T ss_pred             HHHHHHH-HHHHHhCCCChhHHHH-----Hh---h-cc--cccccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665442 2222334444432110     00   0 00  00111122344667777766543 4555566777788999


Q ss_pred             hhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          224 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       224 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      |.|+++.+|++...........++...++.++.|+++||++||
T Consensus       274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr  316 (438)
T PRK09952        274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR  316 (438)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            9999888888877655555566677788889999999999876

>PRK15075 citrate-proton symporter; Provisional

Probab=99.98  E-value=7.1e-30  Score=230.18  Aligned_cols=247  Identities=14%  Similarity=0.132  Sum_probs=182.8

Q ss_pred             CcchhhhHhHhCCCccchhHHH-HHHH-----HHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchh--
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQ-SSFL-----WGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~-s~~~-----~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   73 (339)
                      ++..|.+.+|++.++.+.+... +...     ++..+++++.|+++||+|||+.++.+..+++++++++  ++++|++  
T Consensus        35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~--~~~~~~~~~  112 (434)
T PRK15075         35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI--AFVPGYATI  112 (434)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH--HhCCcHHHH
Confidence            4678999999999888865443 3222     2224688999999999999999999999999999999  5578876  


Q ss_pred             ------HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhccchH
Q 019567           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (339)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~~w~~  139 (339)
                            .++++|+++|++.+...+....++.|++|+++|++++++.+.+.++|..+++.+++.+.        +.+|||+
T Consensus       113 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~  192 (434)
T PRK15075        113 GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI  192 (434)
T ss_pred             HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence                  46899999999999999999999999999999999999999998888888888877653        5689999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHH-HHHHHhhHHHHHH
Q 019567          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTV-IIANITNNWGYFV  218 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  218 (339)
                      +|++..+...+ .   + ..++.+++.+   +...+   +     ++.+....+++..++++.+.. ....++....++.
T Consensus       193 ~f~~~~~~~~~-~---~-~~~~~~~e~~---~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK15075        193 PFLIGCLIVPF-I---F-LIRRSLEETE---EFLAR---K-----HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYL  256 (434)
T ss_pred             HHHHHHHHHHH-H---H-HHHHhcCCCH---HHHHh---h-----hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99975433211 1   1 1122221110   00000   0     001111224445555555443 3334445556777


Q ss_pred             HHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          219 LLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       219 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ...|.|.|+++.+|++..+.++......++++++.++.|+++||+++|
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r  304 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR  304 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            889999999988899998888888888889999999999999999876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=8.8e-30  Score=232.87  Aligned_cols=325  Identities=18%  Similarity=0.218  Sum_probs=209.8

Q ss_pred             CcchhhhHhHh--------CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh-----
Q 019567            2 SVAVVPLAAKF--------GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-----   68 (339)
Q Consensus         2 ~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~-----   68 (339)
                      ++..|.+++++        +.++.+.++..+.+.++..+++++.|+++||+|||+++..+.+++.++.+.+++..     
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~  111 (479)
T PRK10077         32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTS  111 (479)
T ss_pred             hHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            34567777777        88899999999999999999999999999999999999999999999888774310     


Q ss_pred             -----hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhc
Q 019567           69 -----THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STI  135 (339)
Q Consensus        69 -----~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~  135 (339)
                           .+++..++++|+++|++.|...+...++++|++|+|+|++++++.+.+..+|..+++.++..+.        +..
T Consensus       112 ~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  191 (479)
T PRK10077        112 IGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTD  191 (479)
T ss_pred             ccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccC
Confidence                 1225678899999999999999999999999999999999999999999999999988776553        357


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHH-H-HHHhCCccccccCCCccHHHHhc-----chhHHH----
Q 019567          136 GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSEL-R-LIQAGKSDSVKKRNPPSLRHLLS-----KLPSWT----  204 (339)
Q Consensus       136 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~----  204 (339)
                      |||+.|++.++..++..+. .++.||+|++...+++.++ + ..++....++.++...+.++.++     .+..+.    
T Consensus       192 gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (479)
T PRK10077        192 GWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVG  270 (479)
T ss_pred             ChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHH
Confidence            9999999988777765544 5567888754211111111 1 00000000000000001111111     011100    


Q ss_pred             -H----HHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHH
Q 019567          205 -V----IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS  279 (339)
Q Consensus       205 -~----~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  279 (339)
                       .    ....+.....++...++.|.+.++ .|.+...........++...++.++.+++.||+++|         .++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r---------~~~i  340 (479)
T PRK10077        271 VIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK---------PLQI  340 (479)
T ss_pred             HHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh---------HHHH
Confidence             0    111111222233445566777666 688877777777778888899999999999999875         4555


Q ss_pred             HHhhhhhhHhhhhhcc---cchh-HHHHHHHHHHHHhhhc-ccchhhhhh--hcccchhhhhhhh
Q 019567          280 IGFIGPGVSLLCLNYA---KSPA-VAAVLITIALSLSSFS-QAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       280 ~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+.++.+++..++...   +... ......+...+..+.. .+.......  ..++++++.+|..
T Consensus       341 ~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  405 (479)
T PRK10077        341 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA  405 (479)
T ss_pred             HhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHH
Confidence            6666666655554322   1111 1111222222222221 233344444  4447788887753

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=2.5e-29  Score=223.99  Aligned_cols=302  Identities=14%  Similarity=0.120  Sum_probs=220.7

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      +.+++++|.|+.+.|+..+.+.+...+.+++.|+++||+|||+++..+.++..++.+.+  ..+++++.+++.|+++|++
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l~g~~  112 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM--AIAHEPWLLWLSCILSGLG  112 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999998  5578999999999999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (339)
                      .+...+...+++.|++|+|+|++++++.+...++|..+||++++++. .++||+.|++.++..++..+......||.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  191 (400)
T PRK11646        113 GTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS  191 (400)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence            99888999999999999999999999999999999999999999998 68999999998887776655555555543211


Q ss_pred             CCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHh
Q 019567          166 SPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP  245 (339)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  245 (339)
                      +.   +               ++...++++.+++|+++...+..+...........++|.|+++..+ ++.+.+.+....
T Consensus       192 ~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~  252 (400)
T PRK11646        192 TV---R---------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIE  252 (400)
T ss_pred             cc---c---------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHH
Confidence            00   0               0011246778888888766655555444444456788999988644 677888887777


Q ss_pred             HHHHHHHHhhhhhhhHH-HHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh
Q 019567          246 WGTMAVSGYMAGKASDS-LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ  324 (339)
Q Consensus       246 ~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (339)
                      .+....+....+++.|| .+.+         .....+..+.++...++...++.+.......+.....+...+.......
T Consensus       253 ~~~~~~~~~~~~~~~~~r~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~  323 (400)
T PRK11646        253 ACLSLTLLYPIARWSEKRFRLE---------HRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSA  323 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            77666655555666654 3322         2234455555555555555554443333222222333333344444444


Q ss_pred             --hcccchhhhhhhhc
Q 019567          325 --IAQDFSTALQIQQE  338 (339)
Q Consensus       325 --~~p~~~g~~~g~q~  338 (339)
                        ..++++|+.+|.++
T Consensus       324 ~~~p~~~~g~~~g~~~  339 (400)
T PRK11646        324 SLADARARGSYMGFSR  339 (400)
T ss_pred             hcCCcccchhhhhHHH
Confidence              55688898887653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=3.1e-29  Score=220.51  Aligned_cols=312  Identities=11%  Similarity=0.054  Sum_probs=223.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-----cchHH-HHHHHHHHHHHHHHHhhhh-hcchhH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKKV-LAWGVALWSLSTLLTPWAA-THSTAS   74 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~~-l~~~~~~~~~~~~~~~~~~-~~~~~~   74 (339)
                      ++.+|.+.+|+|+|.+++|+.... .+...+ .+++|+++||+     ||||. ++.+.++.++.....++.. ..+.+.
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~   85 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL   85 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence            467899999999999999999766 555555 99999999998     89887 4667777777766663311 145566


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc--------chHHHHHHHH
Q 019567           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--------ISGPFILFSS  146 (339)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--------w~~~f~~~~~  146 (339)
                      +....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+        ||..|++.++
T Consensus        86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai  165 (356)
T TIGR00901        86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL  165 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence            77778888888888899999999999999999999999999999999999999999988888        9999999888


Q ss_pred             HHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchh---HHHHHHHHHhhHHHHHHHHHhh
Q 019567          147 LGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP---SWTVIIANITNNWGYFVLLSWM  223 (339)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  223 (339)
                      ..++..+..++..||++++++. +++++            ++...++++++++|.   ++...+..++....++....+.
T Consensus       166 ~~l~~~~~~~~~~~e~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (356)
T TIGR00901       166 LILPGLLVTLFLAKEPQEDASV-PKPLT------------QAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT  232 (356)
T ss_pred             HHHHHHHHHHHhccCCCccccc-chhHH------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776555545445654332111 11110            001124567777765   6666667777777888888999


Q ss_pred             hhhhhhhhCCccchhhHhhHHhH-HHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-------
Q 019567          224 PIYFNTVFNVNLKQAAWFSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-------  295 (339)
Q Consensus       224 ~~~l~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  295 (339)
                      |.|+++ +|+++++.+......+ +..+++.+++|++.||+++|         +.+..+.++.++...++...       
T Consensus       233 ~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~  302 (356)
T TIGR00901       233 TLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL---------YALLLFGIVQALTNAGFVWLASNGHHD  302 (356)
T ss_pred             HHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            999998 7999999988877666 56788999999999999976         22334444444444433221       


Q ss_pred             ----cchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhhc
Q 019567          296 ----KSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       296 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q~  338 (339)
                          ++.+.......+..+..+...+.......  ..|+++|+.+|.++
T Consensus       303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  351 (356)
T TIGR00901       303 GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLS  351 (356)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence                12232333333334444555566666666  56688899888653

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=4.7e-30  Score=236.11  Aligned_cols=315  Identities=15%  Similarity=0.094  Sum_probs=221.1

Q ss_pred             cchhhhHhHhCCC---ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q 019567            3 VAVVPLAAKFGWS---SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVR   79 (339)
Q Consensus         3 ~~~~~i~~~~~~s---~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   79 (339)
                      +..|.+.+|+|++   +.+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.+++  ++++|++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT--AFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH--HHcccHHHHHHHH
Confidence            5678899999999   8999999999999999999999999999999999999999999999998  5689999999999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      ++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.+   ||+.|++.+++.++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999999998877654   9999999988877766555 567


Q ss_pred             cCCCCCCCCCChHHH--HHH----HhC-------------CccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHH
Q 019567          160 TNDPCNSPFVSKSEL--RLI----QAG-------------KSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~--~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (339)
                      ||+|++...+.+.++  +..    +.+             +++++++.++.++++++++|+++...+......+......
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY  343 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            888864221111110  000    000             0000111123467889999988776665554444333333


Q ss_pred             HhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccch--
Q 019567          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--  298 (339)
Q Consensus       221 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  298 (339)
                      ..++.+..+ .+.+..   ......++..+++.++.+++.||++||         ..+..+.++.+++.+++...++.  
T Consensus       344 ~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr---------~~~~~~~~~~~~~~l~~~~~~~~~~  410 (505)
T TIGR00898       344 YGLVLDLGN-LGGNIY---LDLFISGLVELPAKLITLLLIDRLGRR---------YTMAASLLLAGVALLLLLFVPVDLY  410 (505)
T ss_pred             HHHhccccc-cCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHHHHcCCCch
Confidence            333333333 344432   233345667788999999999999875         45556666666665555554433  


Q ss_pred             hHHHHHHHHHHHHhhhcccchhhhhh-hcc-cchhhhhhh
Q 019567          299 AVAAVLITIALSLSSFSQAGYLLNIQ-IAQ-DFSTALQIQ  336 (339)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~~g~~~g~  336 (339)
                      +.......+..+..+........... ..| +.++...|.
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~  450 (505)
T TIGR00898       411 FLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGV  450 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhH
Confidence            33333333333333333344444444 444 566766654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=5.3e-29  Score=220.91  Aligned_cols=240  Identities=15%  Similarity=0.133  Sum_probs=190.4

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+.+  ..++|++.+++.|++
T Consensus        26 ~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  103 (381)
T PRK03633         26 NTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGL--GLMVGFWSWLAWRFV  103 (381)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999988  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+.+.+..++++|+++++.+..+.++|..+||.+++.+.+...|...+.. +..........+  .+.
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~--~~~  180 (381)
T PRK03633        104 AGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILPLLF--TRI  180 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHH--hcc
Confidence            99999998888888888999999999999999999999999999999998776444443332 222211111111  121


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      ++++++                 +  ++..+.++.+|+|.++......+.....+.....++|.|+++ .|.++.+.+.+
T Consensus       181 ~~~~~~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~  240 (381)
T PRK03633        181 LNQQAE-----------------N--HDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFW  240 (381)
T ss_pred             cCCCCC-----------------C--CCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            111100                 0  011245677888887765544444445556667789999987 59999899998


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .+...++.+++++..|++.||+++|
T Consensus       241 ~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        241 MALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            8888899999999999999999875

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.97  E-value=1.3e-30  Score=242.62  Aligned_cols=265  Identities=16%  Similarity=0.214  Sum_probs=211.8

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh-------------
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-------------   68 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~-------------   68 (339)
                      ++.++.++++|++++++.|++.+.+.+++.++.++.+++.||+|||+++.++.++++++++++++..             
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            5678999999999999999999999999999999999999999999999999999999999985431             


Q ss_pred             ------------------------------------hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHH
Q 019567           69 ------------------------------------THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGI  112 (339)
Q Consensus        69 ------------------------------------~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~  112 (339)
                                                          ...+..++++|+++|+|.+..++...+++.|++|+++|++++++
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence                                                00245678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHhhhhc----------------------cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 019567          113 CMGGFHLGNVVGLLLTPIMLSTI----------------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS  170 (339)
Q Consensus       113 ~~~~~~~g~~~~~~l~~~l~~~~----------------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (339)
                      +.....+|..+|+++++++.+.+                      +|+..|++.+++.++..+..+.+.++.|++.++.+
T Consensus       213 ~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~  292 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN  292 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc
Confidence            99999999999999999887643                      27778988888887766655544333333211111


Q ss_pred             -h-HHHHHHHhCCccc------cccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhh
Q 019567          171 -K-SELRLIQAGKSDS------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFS  242 (339)
Q Consensus       171 -~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  242 (339)
                       + ++.+..++..+++      ..++....++++++||.++...+..++.....+++.+|+|.|+++++|+++.+++.+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~  372 (633)
T TIGR00805       293 VDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLI  372 (633)
T ss_pred             hhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHh
Confidence             1 1100000000000      0011123467899999999999999999999999999999999999999999999998


Q ss_pred             HHhHH-HHHHHHhhhhhhhHHHHHh
Q 019567          243 AVPWG-TMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       243 ~~~~~-~~~~~~~~~g~l~d~~~~~  266 (339)
                      ....+ +.+++.+++|++.||++.+
T Consensus       373 ~~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       373 GVVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             hhhhhhHHHHHHhhhhheeeeeccc
Confidence            87776 5678999999999998754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=1.7e-28  Score=215.08  Aligned_cols=285  Identities=28%  Similarity=0.417  Sum_probs=242.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++..|.+.+++|.++.+.++..+.+.++..++.++.|+++||+|||+.+..+..+..++.+..  ...++++.+++.|++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l   96 (352)
T cd06174          19 SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL--AFASSLWLLLVGRFL   96 (352)
T ss_pred             HhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999998  557999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+...+++.|++|+|+|++.+++.+....+|..++|.+++.+.+..+||+.+++.++..++..+...+..  
T Consensus        97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  174 (352)
T cd06174          97 LGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--  174 (352)
T ss_pred             HHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999998888777665544331  


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                                                            |+++...+..++..........+.|.+.++.+|.+..+.+..
T Consensus       175 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (352)
T cd06174         175 --------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLL  216 (352)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence                                                  557777788888888888999999999999779999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHH-HHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKI-MQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (339)
                      .....++..++.++.+++.||+++|         . .+..+..+..++.......++.+.......+.....+...+...
T Consensus       217 ~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         217 LSLFGLGGILGALLGGLLSDRLGRR---------RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHH
Confidence            9999999999999999999999876         3 56667777777777776666555544444444455555555555


Q ss_pred             hhhh-h-cccchhhhhhhh
Q 019567          321 LNIQ-I-AQDFSTALQIQQ  337 (339)
Q Consensus       321 ~~~~-~-~p~~~g~~~g~q  337 (339)
                      .... . .++++++.++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~  306 (352)
T cd06174         288 TLASELAPPEARGTASGLF  306 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHH
Confidence            5555 4 448888877754

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=1e-28  Score=220.57  Aligned_cols=299  Identities=18%  Similarity=0.117  Sum_probs=206.8

Q ss_pred             cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hh-----cchhHH
Q 019567            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-AT-----HSTASL   75 (339)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~-----~~~~~~   75 (339)
                      +.+|. +++++|.|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.+.+. ..     .+++.+
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            45565 678999999999999999999999999999999999999999999999888877665321 12     256788


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      ++.|+++|++.+...+....++.|++|+|+|++++++.+....+|..+++.+++.+.++.|||..+++..+..++.....
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  195 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA  195 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999887666554332221


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCcc
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  235 (339)
                       ...|+++++   .+              +    +.++++.++  +++.......+....+.....++|.|+++ .|.  
T Consensus       196 -~~~~~~~~~---~~--------------~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  248 (399)
T PRK05122        196 -RPRPAVPPV---KG--------------E----RLPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--  248 (399)
T ss_pred             -hcCCCCCCC---Cc--------------c----chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--
Confidence             111221110   00              0    012233332  22222223333444555666788888876 465  


Q ss_pred             chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhc
Q 019567          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (339)
                      .+.+.......++.++++++.|++.||+++|         +....+..+.+++..++...++.+.......+.....+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~  319 (399)
T PRK05122        249 DGAALALTLFGVAFVGARLLFGNLINRLGGL---------RVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV  319 (399)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH
Confidence            3456666777888889999999999998865         3444555555555555555555443333222222223333


Q ss_pred             ccchhhhhh--hcccchhhhhhhh
Q 019567          316 QAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       316 ~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+.......  ..++++|+.++..
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~  343 (399)
T PRK05122        320 FPALGVEAVKRVPPQNRGAALGAY  343 (399)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            333223233  5567788877653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=2.1e-28  Score=219.27  Aligned_cols=308  Identities=14%  Similarity=0.118  Sum_probs=216.4

Q ss_pred             CcchhhhHhHhCCCccc-----hhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 019567            2 SVAVVPLAAKFGWSSSF-----LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLL   76 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-----~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (339)
                      .+.+|.+.+|+|.+..+     .+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++  ..++|++.++
T Consensus        34 ~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~  111 (408)
T PRK09874         34 MPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM--GLAQNIWQFL  111 (408)
T ss_pred             hhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH--HHHhhHHHHH
Confidence            46788999999998765     4889999999999999999999999999999999999999988888  5588999999


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.|++.|++.+ ..+....++.|++|+++|++++++......+|..++|.+++.+.+..+||+.|++.++..++..+..+
T Consensus       112 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (408)
T PRK09874        112 ILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTL  190 (408)
T ss_pred             HHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999865 56778889999999999999999999999999999999999999999999999999888777666666


Q ss_pred             hhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHH-HHHHhhHHHHHHHHHhhhhhhhhhhCCcc
Q 019567          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVI-IANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  235 (339)
                      +..||++++.++.++.+                ..+..+.+++|+++... ...+...........+++.|..+..+...
T Consensus       191 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (408)
T PRK09874        191 FCIRENFQPVSKKEMLH----------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVS  254 (408)
T ss_pred             HHhccCcccccchhhhH----------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            66666543221110000                01123445666665433 33333344444556778888877533222


Q ss_pred             c---hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHh
Q 019567          236 K---QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (339)
Q Consensus       236 ~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (339)
                      +   ..+.+..+.+++.+++.+..|++.||+++|         ..+..+.....+..+.....++.+.......+.....
T Consensus       255 ~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  325 (408)
T PRK09874        255 NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE---------KILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAAD  325 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            1   234555566777888889999999999876         3334444455554444444444443333333333333


Q ss_pred             hhcccchhhhhh--hcccchhhhhhhh
Q 019567          313 SFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       313 ~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      +...+.......  ..++++|..++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (408)
T PRK09874        326 GALLPAVQTLLVYNSSNQIAGRIFSYN  352 (408)
T ss_pred             HhhHHHHHHHHHHhCCcccceeeehHH
Confidence            333344444444  4456677776643

>PRK12382 putative transporter; Provisional

Probab=99.97  E-value=1.7e-28  Score=218.65  Aligned_cols=299  Identities=16%  Similarity=0.168  Sum_probs=202.3

Q ss_pred             cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh------hhcchhHH
Q 019567            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------ATHSTASL   75 (339)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~------~~~~~~~~   75 (339)
                      |.+|. +++|+|.|+++.|++.+.+.+++.+++++.|+++||+||||++..+.+...++.+...+.      ..+|++.+
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL  115 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Confidence            45564 688999999999999999999999999999999999999999999988777665432111      13578899


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      ++.|+++|++.+...+...+++.|++|+|+|++++++.+.+...|..++|++++.+.+.+|||+.+.+..+..++.... 
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-  194 (392)
T PRK12382        116 VVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-  194 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-
Confidence            9999999999999889999999999999999999999999999999999999999999999998877655443332221 


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCcc
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  235 (339)
                      ....||.+++++                 +    +.+.++..+  .++...+..++..........+.|.|+++ .|++ 
T Consensus       195 ~~~~~~~~~~~~-----------------~----~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-  249 (392)
T PRK12382        195 NGTVRKVPAHAG-----------------E----RPSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA-  249 (392)
T ss_pred             HHhccCCCCCcc-----------------c----CchHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc-
Confidence            111122111100                 0    001222221  12222222233334455566788888877 4654 


Q ss_pred             chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhc
Q 019567          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (339)
                       +.+.......++.++++++.|++.||+++|         +.+..+..+..++..++...++.+.......+.....+..
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  319 (392)
T PRK12382        250 -MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV---------KVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI  319 (392)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------eehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence             345556667777888999999999999876         2333444555555555555555443333333333333333


Q ss_pred             ccchhhhhh--hcccchhhhhhhh
Q 019567          316 QAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       316 ~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+.......  ..|+++|+..|..
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Confidence            333333333  5668888888764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=5.6e-29  Score=227.23  Aligned_cols=263  Identities=20%  Similarity=0.180  Sum_probs=190.0

Q ss_pred             CcchhhhHhHhCCC--------ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hhcch
Q 019567            2 SVAVVPLAAKFGWS--------SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHST   72 (339)
Q Consensus         2 ~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~~~~   72 (339)
                      ++..|.+.++++.+        ..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.+. ...++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (481)
T TIGR00879        48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSV  127 (481)
T ss_pred             hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            45677788888777        7899999999999999999999999999999999999999999999888331 12345


Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH---HHhhhhccchHHHHHHHHHHH
Q 019567           73 ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT---PIMLSTIGISGPFILFSSLGL  149 (339)
Q Consensus        73 ~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~---~~l~~~~~w~~~f~~~~~~~~  149 (339)
                      +.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++   ....+..+||+.|++.++..+
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~  207 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG  207 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999998   666677899999999665554


Q ss_pred             HHHHHHHhhccCCCCCCC--CCChHHHHHHHh---CCccc----------------cccCCCccHHHHhcc------hhH
Q 019567          150 LWLSTWTSKVTNDPCNSP--FVSKSELRLIQA---GKSDS----------------VKKRNPPSLRHLLSK------LPS  202 (339)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~------~~~  202 (339)
                      +. +...++.||+|+...  ...++..+...+   ..+++                +.+..+..+++.++.      +.+
T Consensus       208 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (481)
T TIGR00879       208 LL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLF  286 (481)
T ss_pred             HH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHH
Confidence            44 344455677664211  111110100000   00000                000011113333332      222


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          203 WTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +...+..+...........+.|.++++ .|++..+.+.......++.+++.++.+++.||+++|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  349 (481)
T TIGR00879       287 LGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR  349 (481)
T ss_pred             HHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            333333333333344456677777665 699988888888888999999999999999999876

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=5.3e-28  Score=215.31  Aligned_cols=299  Identities=15%  Similarity=0.087  Sum_probs=198.1

Q ss_pred             hhHhHhCCCccchhHHHHHHHH-HHHHHHhhhHHHhhhhcchHHH-HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVL-AWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .+.+|+|.|++++|++.+...+ ++.+++++.++ +||+||||.+ ..+.+..+++..+.  +.+++++.+++.+.+.|.
T Consensus        41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~  117 (393)
T PRK15011         41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLF--AWNRNYFVLLFVGVFLSS  117 (393)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence            3678999999999999876655 55556655555 9999999875 45566666777766  557889887666555444


Q ss_pred             hhhcchhhhHHHHhhhCCcchh--hHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           85 AEGVAMPAMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      ..+...|....++.|+.++++|  +...++.+.+.++|.+++|++++.+.+++|||..|++.++..++..+..+...||.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  197 (393)
T PRK15011        118 FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSM  197 (393)
T ss_pred             HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            4456778888888888766555  34568889999999999999999999999999999999988887777777777776


Q ss_pred             CCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcc-hhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          163 PCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSK-LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++..++ +           . +    ..+   ++ +..+......+.....+.....+.|.|+++.+|+++.+.+.+
T Consensus       198 ~~~~~~~~~-~-----------~-~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~  257 (393)
T PRK15011        198 RKELPLATG-T-----------L-E----APR---RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVM  257 (393)
T ss_pred             CCCCccccc-c-----------c-c----ccc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            543321100 0           0 0    000   11 222333333344444555566789999988889999999988


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (339)
                      .....+..+++.++.|+++||+++|         +....+.....+........++.+.......+.....+...+....
T Consensus       258 ~~~~~~~~i~~~~~~G~l~dr~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~  328 (393)
T PRK15011        258 MGTAAGLEIPTMLIAGYFAKRLGKR---------FLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGML  328 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChH---------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777778888999999999999876         2223333333333333333333333332222232333333333334


Q ss_pred             hhh-hcccchhhhhhhh
Q 019567          322 NIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       322 ~~~-~~p~~~g~~~g~q  337 (339)
                      ... ..|+++|..++..
T Consensus       329 ~~~~~~p~~~g~~~~~~  345 (393)
T PRK15011        329 YFQDLMPGQAGSATTLY  345 (393)
T ss_pred             HHHHhCCCCcchHHHHH
Confidence            445 6777788776653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.97  E-value=3.6e-28  Score=215.60  Aligned_cols=303  Identities=11%  Similarity=0.048  Sum_probs=227.7

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHH----HHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVL----AWGVALWSLSTLLTPWAATHSTASLLAV   78 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (339)
                      |.+|.+.+|+|.|.+++|++.+.+.+...+++++.|+++||+|||+..    ..+..+..+  ..+  ..+++++.+++.
T Consensus        25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~--~~~~~~~~l~~~  100 (382)
T TIGR00902        25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFS--AGAHNAWLLFIA  100 (382)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHH--HhhhhHHHHHHH
Confidence            667899999999999999999999999999999999999999985433    222222222  233  347899999999


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      |.++|.+.+...|...++..|+  +++|++++|......++|.+++|++++.+.+++|||..|.+.+....+ .+.....
T Consensus       101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~~  177 (382)
T TIGR00902       101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLIGFLI  177 (382)
T ss_pred             HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHHHHc
Confidence            9999999988889988887765  478899999999999999999999999999999999999887655332 2233333


Q ss_pred             ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchh
Q 019567          159 VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA  238 (339)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  238 (339)
                      .|+.++++++ +  +           ++++...+.++++|+|+++...+..++..........+.|.|+++ .|.++.+.
T Consensus       178 ~~~~~~~~~~-~--~-----------~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~  242 (382)
T TIGR00902       178 KPTIPPKDAI-P--E-----------DESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASAT  242 (382)
T ss_pred             CCCCCCCccc-c--c-----------cccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHH
Confidence            2322221110 0  0           011112357789999999999888888888888899999999988 79999999


Q ss_pred             hHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccc
Q 019567          239 AWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAG  318 (339)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (339)
                      +.+.....++.++..++.+++.||+++|         ..+..+.+...+...++.+.++.+......++-....+...+.
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~  313 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSAR---------DLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA  313 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCHH---------HHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888888999999999998865         5667888888888888777776665555455555555555555


Q ss_pred             hhhhhh-hcccchhhhhhh
Q 019567          319 YLLNIQ-IAQDFSTALQIQ  336 (339)
Q Consensus       319 ~~~~~~-~~p~~~g~~~g~  336 (339)
                      ...... ..++++++.++.
T Consensus       314 ~~~~i~~~~~~~~~~~q~~  332 (382)
T TIGR00902       314 AMRYIAAQPGSEIAKLQAL  332 (382)
T ss_pred             HHHHHHhCCHhhHHHHHHH
Confidence            554555 644555555554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=1.1e-28  Score=221.58  Aligned_cols=311  Identities=14%  Similarity=0.085  Sum_probs=225.6

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh---hhhcchhHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW---AATHSTASLLAVR   79 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r   79 (339)
                      +.+|.+.+|++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..++   ...++++.+++.|
T Consensus        38 ~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  117 (417)
T PRK10489         38 VAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLG  117 (417)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            4578888999999999999999999999999999999999999999999988887777665421   1256788999999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +++|++.+...+...+++.|+.|+++|+++.++.....++|..+||.+++.+.+..+|++.|++.++..++..+.. ...
T Consensus       118 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l  196 (417)
T PRK10489        118 LWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRL  196 (417)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhC
Confidence            9999999888899999999999999999999999999999999999999999998999999998777666554443 344


Q ss_pred             cCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhh
Q 019567          160 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  239 (339)
                      |+.+++++..++             +.++....++.++++|.++...+..++... ......++|.|+++.+|.++.+.+
T Consensus       197 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g  262 (417)
T PRK10489        197 PALPPPPQPREH-------------PLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIG  262 (417)
T ss_pred             CCCCCCCccccc-------------chHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhH
Confidence            554432211100             000111235567788877665555444332 455678899999998899999999


Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccch
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .+.+...++.+++.++.+++.||.+++         +.+..+.++..+..+++...++.+.......+.+...+...+..
T Consensus       263 ~~~~~~~~g~~ig~~~~~~l~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  333 (417)
T PRK10489        263 LLYAAVPLGAALGALTSGWLAHSARPG---------LLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQ  333 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCcc---------hHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999874332         34445555555555555555544333333332222233333333


Q ss_pred             hhhhh-h-cccchhhhhhhh
Q 019567          320 LLNIQ-I-AQDFSTALQIQQ  337 (339)
Q Consensus       320 ~~~~~-~-~p~~~g~~~g~q  337 (339)
                      ..... . .++++|+.+|..
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~  353 (417)
T PRK10489        334 YTLLQTQTPDEMLGRINGLW  353 (417)
T ss_pred             HHHHHhhCCHHHHHHHHHHH
Confidence            34444 4 446788887754

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=2.9e-28  Score=216.20  Aligned_cols=304  Identities=12%  Similarity=0.048  Sum_probs=220.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcch----HHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK----KVLAWGVALWSLSTLLTPWAATHSTASLLA   77 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (339)
                      .|.+|.+.+|+|.|..++|+..+++.++..+++++.|+++||+|||    +.+.+...+..  ....  ..+++++.+++
T Consensus        24 ~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~l~i   99 (382)
T PRK11128         24 LPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFW--FGAHSFWLLFV   99 (382)
T ss_pred             hhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHH--HhcccHHHHHH
Confidence            3677888999999999999999999999999999999999999984    33333322222  1222  33688999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      .|++.|++.+...|...+++.++  +++|+++.+......++|..+||++++++.+++|||..|++.++..++..+ ...
T Consensus       100 ~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~  176 (382)
T PRK11128        100 AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQL  176 (382)
T ss_pred             HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHH
Confidence            99999999998889888888877  467888899999999999999999999999999999999987765444333 233


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  237 (339)
                      ..||++++.+    +++          ++++...++++++|+|+++...+..++.........++.|.|++| .|.+..+
T Consensus       177 ~~~~~~~~~~----~~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~  241 (382)
T PRK11128        177 LRPTIMPQGE----SRQ----------QESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSAST  241 (382)
T ss_pred             ccCCCCCccc----ccc----------ccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhH
Confidence            3343322110    000          011123467899999999988887777777777788888999977 7999999


Q ss_pred             hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhccc
Q 019567          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQA  317 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (339)
                      .+.+.+...++.++..++.+++.||++++         ..+..+.+..++....+...++.+.......+.....+...+
T Consensus       242 ~g~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        242 IGYLWSLGVVAEVLIFAFSNRLFRRWSAR---------DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888889999999998865         445566677776666666666655444433333333444444


Q ss_pred             chhhhhh-hcccchhhhhhh
Q 019567          318 GYLLNIQ-IAQDFSTALQIQ  336 (339)
Q Consensus       318 ~~~~~~~-~~p~~~g~~~g~  336 (339)
                      ....... ..+++.++.++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~  332 (382)
T PRK11128        313 AAMRYIAARPGSEVIRLQAL  332 (382)
T ss_pred             HHHHHHHHCCHhhhHHHHHH
Confidence            4444444 555665665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=9.7e-29  Score=226.95  Aligned_cols=260  Identities=15%  Similarity=0.167  Sum_probs=188.8

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|+|+.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.++.  ..++|++.+++.|++
T Consensus        40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l  117 (496)
T PRK03893         40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLAC--GFAPGYWTLFIARLV  117 (496)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999998  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...+....++.|++|+|+|++++++...+..+|..++|.+.+.+.+.++||+.|++..+..+ ..+......||
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~-~~~~~~~~~p~  196 (496)
T PRK03893        118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPII-FALWLRKNLPE  196 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999987544333 23333333454


Q ss_pred             CCCCCCCCChHH--HHHHHhCCccccccCCCccH---------HHHh-------------------------------cc
Q 019567          162 DPCNSPFVSKSE--LRLIQAGKSDSVKKRNPPSL---------RHLL-------------------------------SK  199 (339)
Q Consensus       162 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~-------------------------------~~  199 (339)
                      +++++++.++++  .+..+....  +++......         ...+                               +.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (496)
T PRK03893        197 AEDWKEKHAGKAPVRTMVDILYR--GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRW  274 (496)
T ss_pred             chhhhhhccccccchhHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccch
Confidence            432111100000  000000000  000000000         0000                               00


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.........+......+....++|.|+++.+|++..+.+.+.+...++.++++++.|++.||+++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~  341 (496)
T PRK03893        275 PTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR  341 (496)
T ss_pred             hHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            0000001111111111123457899999877899999999999999999999999999999999875

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.97  E-value=3.4e-28  Score=223.09  Aligned_cols=260  Identities=13%  Similarity=0.092  Sum_probs=184.3

Q ss_pred             cchhhhHhHh-----CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc------
Q 019567            3 VAVVPLAAKF-----GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS------   71 (339)
Q Consensus         3 ~~~~~i~~~~-----~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~------   71 (339)
                      ...|.+.+++     +.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++++  .+++      
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~--~~~~~~~~~~  114 (502)
T TIGR00887        37 LVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG--LSPGSSPKSV  114 (502)
T ss_pred             HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH--HccCcccchH
Confidence            3455565542     34556779999999999999999999999999999999999999999999884  3554      


Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh------------------
Q 019567           72 TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------------------  133 (339)
Q Consensus        72 ~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~------------------  133 (339)
                      ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.++..+..                  
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGS  194 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence            68899999999999999999999999999999999999999999999999999988866532                  


Q ss_pred             -----hccchHHHHHHHHHHHHHHHHHHhhccCCCCCC---CCCChHHHHHHH---h-C---Cccc------cccCCCcc
Q 019567          134 -----TIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS---PFVSKSELRLIQ---A-G---KSDS------VKKRNPPS  192 (339)
Q Consensus       134 -----~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~-~---~~~~------~~~~~~~~  192 (339)
                           .++||+.|.+.++.+++. .+..++.||+|++.   ++.+++..+...   . +   ..++      +++....+
T Consensus       195 ~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (502)
T TIGR00887       195 CVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKAS  273 (502)
T ss_pred             ccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhh
Confidence                 247999998877766554 44456779999852   221111111110   0 0   0000      00111135


Q ss_pred             HHHHhcc---hhHHH----HHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhH------------hhHHhHHHHHHHH
Q 019567          193 LRHLLSK---LPSWT----VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW------------FSAVPWGTMAVSG  253 (339)
Q Consensus       193 ~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~------------~~~~~~~~~~~~~  253 (339)
                      +++++++   ++.+.    .....+.....+++...|.|.++++ .|++..+.+.            ......++.+++.
T Consensus       274 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~  352 (502)
T TIGR00887       274 WSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGY  352 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777653   22211    2223344455667777888999876 5887553221            1233344667788


Q ss_pred             hhhhhhhHHHHHh
Q 019567          254 YMAGKASDSLIKA  266 (339)
Q Consensus       254 ~~~g~l~d~~~~~  266 (339)
                      ++.+++.||+|||
T Consensus       353 ~~~~~l~dr~gRR  365 (502)
T TIGR00887       353 WVTVFLVDIIGRK  365 (502)
T ss_pred             HHHHHHhhhhcch
Confidence            8999999999976

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=6.8e-28  Score=214.65  Aligned_cols=247  Identities=17%  Similarity=0.205  Sum_probs=189.3

Q ss_pred             cchhhhHhHhC--CCccchhHHHHH-----HHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchh--
Q 019567            3 VAVVPLAAKFG--WSSSFLGIVQSS-----FLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA--   73 (339)
Q Consensus         3 ~~~~~i~~~~~--~s~~~~g~~~s~-----~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~--   73 (339)
                      +..+.+.+++.  .++++.+...+.     ..++..+++++.|+++||+|||+++..+.++..++.+++  +.+++++  
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~~   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI--GLLPSYATI   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH--hhCCChhhh
Confidence            34456666643  455666665543     233335689999999999999999999999999999998  5577765  


Q ss_pred             ------HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh--------hhccchH
Q 019567           74 ------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML--------STIGISG  139 (339)
Q Consensus        74 ------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~--------~~~~w~~  139 (339)
                            .+++.|+++|++.+...+....++.|++|+|+|++..++.+.+..+|..+++.++..+.        +.++||+
T Consensus        92 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~  171 (394)
T TIGR00883        92 GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRI  171 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHH
Confidence                  47899999999999999999999999999999999999999999999999998876654        3578999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchh--HHHHHHHHHhhHHHHH
Q 019567          140 PFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLP--SWTVIIANITNNWGYF  217 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  217 (339)
                      .|++.++..++... .....||+++++++     ++         ++++...+.++.+++++  ++......++.....+
T Consensus       172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (394)
T TIGR00883       172 PFLVSAVLVLIGLY-LRRNLEETPVFEKA-----QE---------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFY  236 (394)
T ss_pred             HHHHHHHHHHHHHH-HHHhcCCChhHHHH-----Hh---------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            99987766554333 22333444322110     00         11122335667777665  7766677777777788


Q ss_pred             HHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          218 VLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       218 ~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ....+.|.|+++++|.++.+.+.......++..++.++.|++.||+++|
T Consensus       237 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (394)
T TIGR00883       237 LITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR  285 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            8889999999888899999999998899999999999999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=4.4e-28  Score=215.65  Aligned_cols=302  Identities=14%  Similarity=0.089  Sum_probs=215.3

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      +.+++++|+|+.+.|+..+.+.++..+++++.|+++||+|||+++.++.++..++.++.  .++++++.+++.|.+.|.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~  109 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI--PLVNNVTLVVLFFALINCA  109 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999998888888  5588999999999999988


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (339)
                      .+...+...++..|..|+++|++++++.....++|..++|++++.+.+ .+|+.+|++.++..++..+...+..||++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~  188 (395)
T PRK10054        110 YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA  188 (395)
T ss_pred             HHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            888888899999999999999999999999999999999999998875 7999999998877777655555545544322


Q ss_pred             CCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhh--hCCccchhhHhhH
Q 019567          166 SPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSA  243 (339)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~~~~~  243 (339)
                      +++.+  +               +..+.++.+|+|+++...+..++..........+.+.|+.+.  .+.+....+....
T Consensus       189 ~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  251 (395)
T PRK10054        189 IATET--G---------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLP  251 (395)
T ss_pred             cccch--h---------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHH
Confidence            11000  0               001236678899988887777777666666666777776543  3445555666666


Q ss_pred             HhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-cchhHHHHHHHHHHHHhhhcccchhhh
Q 019567          244 VPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSLSSFSQAGYLLN  322 (339)
Q Consensus       244 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (339)
                      ...+.....+...|++.||.++|         ..+..+.....+....+... ++.+...+...+.........+.....
T Consensus       252 ~~~~~~~~~~~~~g~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~  322 (395)
T PRK10054        252 VNAAMVVSLQYSVGRRLNAANIR---------PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYML  322 (395)
T ss_pred             hhhhheeeehhHHHHHHccCCch---------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            66666666677888888887654         44445555555555555443 233322222222222222223333333


Q ss_pred             hh-hcc-cchhhhhhh
Q 019567          323 IQ-IAQ-DFSTALQIQ  336 (339)
Q Consensus       323 ~~-~~p-~~~g~~~g~  336 (339)
                      .. ..| +.+|+..+.
T Consensus       323 ~~~~~p~~~~~~~~~~  338 (395)
T PRK10054        323 IDHIAPPGMKASYFSA  338 (395)
T ss_pred             HHHhCCcccceehHhH
Confidence            43 334 566666553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.4e-26  Score=193.61  Aligned_cols=305  Identities=15%  Similarity=0.171  Sum_probs=242.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHH-hhhhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT-PWAATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~   80 (339)
                      .+++|++++.|+++..|.+++...++.+|.+.+++.|++.+|+|+|+.++.|+.++++++.+. +.+...++..++++-+
T Consensus        33 diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lF  112 (422)
T COG0738          33 DILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALF  112 (422)
T ss_pred             hhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999987 1224678999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-------------------ccchHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-------------------IGISGPF  141 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-------------------~~w~~~f  141 (339)
                      +.|.|.+...+.++.+++...|+++..+.+++.+..+++|..++|++++.+..+                   -.|+++|
T Consensus       113 ila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pY  192 (422)
T COG0738         113 ILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPY  192 (422)
T ss_pred             HHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHH
Confidence            999999999999999999999998899999999999999999999999887662                   2488899


Q ss_pred             HHHHHHHHHHHHHHHhhc-cCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHH
Q 019567          142 ILFSSLGLLWLSTWTSKV-TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL  220 (339)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (339)
                      ...+....+..+...... |+.++..++                +.+.......+++|+|+++...+..|++........
T Consensus       193 l~~~~~lvll~v~~~~~k~p~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~g  256 (422)
T COG0738         193 LILAGLLVLLAVLILLSKLPDLQVAAPS----------------LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIG  256 (422)
T ss_pred             HHHHHHHHHHHHHHHhccCCcCCccccc----------------ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHH
Confidence            888877766655544332 222221111                001111156889999999999999999999999999


Q ss_pred             HhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhH
Q 019567          221 SWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV  300 (339)
Q Consensus       221 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (339)
                      +|++.|+.|..|.+..+++...+....+.++|++++.++.+|+...         +.+.+..++..+.++.....++...
T Consensus       257 sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~---------k~Laf~a~~~ill~~~~~l~~g~v~  327 (422)
T COG0738         257 SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE---------KYLAFYALIAILLLLAVALIGGVVA  327 (422)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH---------HHHHHHHHHHHHHHHHHHHhcChHH
Confidence            9999999997799999999999999999999999999999988765         3444444444444444455555443


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhh-hcccchhh
Q 019567          301 AAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTA  332 (339)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~  332 (339)
                      .+. ..+.+.+.+..++...+... .-|++...
T Consensus       328 ~~~-l~~ig~F~simfPTIfslal~~l~~~ts~  359 (422)
T COG0738         328 LYA-LFLIGLFNSIMFPTIFSLALKNLGEHTSV  359 (422)
T ss_pred             HHH-HHHHHHHhHHHHHHHHHHHHhccCccccc
Confidence            333 34445556666676666666 55555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.96  E-value=1.1e-26  Score=202.11  Aligned_cols=325  Identities=12%  Similarity=0.038  Sum_probs=237.4

Q ss_pred             CcchhhhHhHhCCCccc-hhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSF-LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +.+.|.+.+|+|+|++| .|.+.++++.+|+++.++.|+++||+|.|+++..+.+.+++.+++.+  +++++..+.+.|+
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~--fa~Sl~~L~i~R~  123 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL--LGTSVWHMQLMEV  123 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            45678999999999999 99999999999999999999999999999999999999999999994  4889999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHH--HHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILF--SSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~--~~~~~~~~~~~~~~  158 (339)
                      +.|++.|... ....++.+|+|+++|+++.++..++..+|.+++++++++ ...+|||+.+.+.  ...+.....++.++
T Consensus       124 llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       124 FYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999999999999999999 5578999876553  22333444555556


Q ss_pred             ccCCCCCC---CCCChH--HHHHHHhCCccc---cc---cC--------CCccHHHHhcchhHHHHHHHHHhhHHHHHHH
Q 019567          159 VTNDPCNS---PFVSKS--ELRLIQAGKSDS---VK---KR--------NPPSLRHLLSKLPSWTVIIANITNNWGYFVL  219 (339)
Q Consensus       159 ~~~~~~~~---~~~~~~--~~~~~~~~~~~~---~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (339)
                      +|..++..   +..+.+  ...+.+....++   ..   +.        -...+++..+||.+....+.+.+...+++..
T Consensus       202 LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv  281 (511)
T TIGR00806       202 LKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLI  281 (511)
T ss_pred             CCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHH
Confidence            66444321   110000  000000000000   00   00        0123445577888888888888888888888


Q ss_pred             HHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchh
Q 019567          220 LSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA  299 (339)
Q Consensus       220 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (339)
                      .+|.-..-++..+-+....|..-++..+.+.+..+..|++-.++.+.       ....+.+..++.+..++++...++.|
T Consensus       282 ~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~-------~~l~l~v~s~~~~gll~~m~~t~~Iw  354 (511)
T TIGR00806       282 TYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW-------SKLLIAVVSAIQAGLVFWMSQSHDIW  354 (511)
T ss_pred             HHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh-------HHHHHHHHHHHHHHHhhhhhcccchH
Confidence            88777666554332223567777777777888888889886554332       23555566666677777788888888


Q ss_pred             HHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          300 VAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      ...+..++......+..+.......  +..+..|.+.|+.
T Consensus       355 ~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiN  394 (511)
T TIGR00806       355 VLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGIN  394 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecH
Confidence            8888877777777666665555444  5555666666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.1e-26  Score=191.04  Aligned_cols=306  Identities=14%  Similarity=0.163  Sum_probs=241.9

Q ss_pred             CCcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      ++|+++++++|+|+|.++.|.++++..+...+.+++..++++|+|.++.+..++++.+++.++-..   .+...++.+-.
T Consensus        31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~---~~~~~L~~gt~  107 (395)
T COG2807          31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL---GGLPLLFLGTL  107 (395)
T ss_pred             hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999844   47888999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHhhc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +.|.|.+......+.+|.+.|| |+-+..+|+|++..++|..+++.++..+.++. |||......+.++++..+.++...
T Consensus       108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~  186 (395)
T COG2807         108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA  186 (395)
T ss_pred             HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999996 78899999999999999999999999999887 799999999999988777666432


Q ss_pred             cCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhh
Q 019567          160 TNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAA  239 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  239 (339)
                       .+++ ..                 +.+.+..+-.+++|+|.-|.+.+.+.+++..+|....|+|.++.| .|+|++++|
T Consensus       187 -~r~~-~~-----------------~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG  246 (395)
T COG2807         187 -LREQ-AA-----------------SIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAG  246 (395)
T ss_pred             -cccc-cc-----------------ccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhh
Confidence             1111 00                 111112234568999999999999999999999999999999999 599999999


Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccch
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .+.+...+..++.++..+.+.+|..++        +........++.++.+.+.+.+........++++.+..+.+....
T Consensus       247 ~llsl~~l~~~~~~ll~P~la~R~~n~--------r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL  318 (395)
T COG2807         247 SLLSLMQLAQLPTALLIPLLARRSKNQ--------RPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLAL  318 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHH
Confidence            999999999999999999999986554        344445555555555555454433222222333333232222222


Q ss_pred             hhhhh--hcccchhhhhhhhc
Q 019567          320 LLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       320 ~~~~~--~~p~~~g~~~g~q~  338 (339)
                      .....  -.|+..+..+|..|
T Consensus       319 ~li~~rs~~a~~Aa~LSgmaQ  339 (395)
T COG2807         319 TLILLRSSDAAIAAALSGMAQ  339 (395)
T ss_pred             HHHHhhcCChHHHHHHHHHhh
Confidence            22222  55667777776654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=3.4e-26  Score=208.55  Aligned_cols=248  Identities=13%  Similarity=0.161  Sum_probs=192.2

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-----cchHH-HHHHHHHHHHHHHHHhhh-hhcchhHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKKV-LAWGVALWSLSTLLTPWA-ATHSTASL   75 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~   75 (339)
                      ..+|...++.|.|.++++.+ +.....+ +..+++|+++||+     ||||. +..+.++.+++...+++. ..++++.+
T Consensus        33 ~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l  110 (491)
T PRK11010         33 GTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWL  110 (491)
T ss_pred             HHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence            45678888899999999997 4444444 6899999999999     99885 667777777776666332 12578889


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-hccchHHHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      .+.+++.|++.+...+...+++.|++|+|+|+++.++...+..+|.++++.++.++.+ ..|||..|++.+++.++..+.
T Consensus       111 ~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        111 AALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988 579999999998887766554


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCc
Q 019567          155 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (339)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  234 (339)
                      .+ ..||++++.+. +++            .++....++++.+++++.+...+..++..........+.++|+.+++|++
T Consensus       191 ~~-~~~e~~~~~~~-~~~------------~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s  256 (491)
T PRK11010        191 TL-LAPEPTDTIPV-PKT------------LEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFD  256 (491)
T ss_pred             HH-hcCCCcccccc-ccc------------hhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44 35665432110 000            00011124677888887777666666666666666778888987778999


Q ss_pred             cchhhHhhH-HhHHHHHHHHhhhhhhhHHHHHh
Q 019567          235 LKQAAWFSA-VPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       235 ~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .++.+.... ...++.+++.+++|++.||+++|
T Consensus       257 ~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~  289 (491)
T PRK11010        257 AGEVGLVNKTLGLLATIVGALYGGILMQRLSLF  289 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999874 55578899999999999999876

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.9e-26  Score=207.98  Aligned_cols=324  Identities=19%  Similarity=0.198  Sum_probs=253.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHH-HHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLA-VRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~   80 (339)
                      +++.+.++++++-+.++++|+.++......+..|+.+.+.||+|.|.+.+.|.++.+++.++.  +++++++.+++ .-+
T Consensus        66 Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~ls--sF~~~i~~l~lt~gv  143 (509)
T KOG2504|consen   66 GLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLS--SFATSLWQLYLTFGV  143 (509)
T ss_pred             hhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999999999  66899987765 468


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      +.|+|.++.+.+...+++.+| +|+|+.+.|+...+.++|..+-|++...+.+.+|||+.+++.+.+.+-..+......|
T Consensus       144 i~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  144 IGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999998 5899999999999999999999999999999999999999999988777777777766


Q ss_pred             CCCCCCCC--------------------CChH------------HHHHHHhCCccccccCCCcc----HHHHhcchhHHH
Q 019567          161 NDPCNSPF--------------------VSKS------------ELRLIQAGKSDSVKKRNPPS----LRHLLSKLPSWT  204 (339)
Q Consensus       161 ~~~~~~~~--------------------~~~~------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  204 (339)
                      ..++..+.                    ....            +....++..++.+....+..    ..+++++|.++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~  302 (509)
T KOG2504|consen  223 LSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLL  302 (509)
T ss_pred             CCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHH
Confidence            43332111                    0000            00000000000000011111    257899999999


Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhh
Q 019567          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIG  284 (339)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  284 (339)
                      ..+...+...+++....++|.|.++ +|++..+++.+.++.++..++++++.|++.|+...+       ++.+..++.+.
T Consensus       303 ~~~~~~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~  374 (509)
T KOG2504|consen  303 LALSNLFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLI  374 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHH
Confidence            9999999999999999999999996 799999999999999999999999999999998744       46778888888


Q ss_pred             hhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhh
Q 019567          285 PGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      .+++.+...+.++.+......++.+.+.+...........  +..++...+.|.
T Consensus       375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl  428 (509)
T KOG2504|consen  375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGL  428 (509)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHH
Confidence            8888877777777755554444444444444333333333  444554444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=1.1e-26  Score=233.26  Aligned_cols=316  Identities=19%  Similarity=0.130  Sum_probs=224.7

Q ss_pred             hhhhHhHhCCCcc--chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHHH
Q 019567            5 VVPLAAKFGWSSS--FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i~~~~~~s~~--~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l   81 (339)
                      .+.+.++++.+.+  ..+++.+++.+++.++++++|+++||+|||++++.+.++..+..++..+ ...++++.+++.|++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  112 (1146)
T PRK08633         33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFL  112 (1146)
T ss_pred             HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            4556667776544  4689999999999999999999999999999999988776666555422 235789999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh--------c-cchHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------I-GISGPFILFSSLGLLWL  152 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~--------~-~w~~~f~~~~~~~~~~~  152 (339)
                      +|++.+...+...+++.|++|+++|++++++.+.+.++|.++++++++++.+.        + +|++.+.+..+...+..
T Consensus       113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1146)
T PRK08633        113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLG  192 (1146)
T ss_pred             HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876        2 34555544444443434


Q ss_pred             HHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  232 (339)
                      ++..+..|+.+++.....+.+.        ....+.....++.++++|.++...+..++..........++|.|+++.+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  264 (1146)
T PRK08633        193 LIFAYRLPKVPAAAPEVFDKKK--------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLG  264 (1146)
T ss_pred             HHHHhcCcCCCCCCcccccccc--------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence            4444455666543322110000        00001112246677888888887777777777777778899999999899


Q ss_pred             Cccc-hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHH
Q 019567          233 VNLK-QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSL  311 (339)
Q Consensus       233 ~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (339)
                      ++.. +.+++.+...++.+++.++.+++.||++++         ..+..+.++.+++.+++....+.+...+...+.+.+
T Consensus       265 ~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  335 (1146)
T PRK08633        265 LDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL---------GLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFS  335 (1146)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc---------cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9998 899999999999999999999999998765         233344455555555555444444433333333334


Q ss_pred             hhhcccchhhhhh--hcccchhhhhhhh
Q 019567          312 SSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       312 ~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .+.......+...  ..++++|.+++..
T Consensus       336 ~~~~~~~~~~~~~~~~p~~~rg~~~~~~  363 (1146)
T PRK08633        336 AGLFIVPLNALIQFRAPEKELGKVLAAN  363 (1146)
T ss_pred             HHHhhHHHHHHHhhcCCccchhhhhHHH
Confidence            4444444445554  4557788877654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.7e-27  Score=197.99  Aligned_cols=264  Identities=20%  Similarity=0.191  Sum_probs=219.8

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcc
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      ++.+-+++++|++.+.+.+.+.+.+++.|.+.||+|+|..+++|...+..+++++  ++.+++++++++|.+||+|.++.
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilF--afg~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILF--AFGNSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHH--HHcchhHHHHHHHHHhhhhHHHH
Confidence            3456677899999999999999999999999999999999999999999999999  66899999999999999999999


Q ss_pred             hhhhHHHHhhhCCcc-hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019567           90 MPAMSTLTSRWFPSH-ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF  168 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (339)
                      .+.+.++++|.||++ +|++++|+.-.+.++|..+||+.++.+.|..|.+.+|+++++++++-..+-++..++++.+.+ 
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~-  255 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD-  255 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc-
Confidence            999999999999875 589999999999999999999999999999999999999999999988877777665544331 


Q ss_pred             CChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHH
Q 019567          169 VSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGT  248 (339)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  248 (339)
                                       +..+..++++++++|.++.........+.........++.+..|.+..+.-+.|..+....+.
T Consensus       256 -----------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~  318 (464)
T KOG3764|consen  256 -----------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLS  318 (464)
T ss_pred             -----------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccc
Confidence                             122334688999999998877666666666666667788888887774444888888888888


Q ss_pred             HHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhH
Q 019567          249 MAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAV  300 (339)
Q Consensus       249 ~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (339)
                      ..++..+.|.+.||+++.       |......+.+..+.+.....+.++...
T Consensus       319 y~ig~~lfg~la~k~~~~-------~wl~~~~gl~~~G~~~~~iP~~~~~~~  363 (464)
T KOG3764|consen  319 YAIGTNLFGKLADKYPHL-------RWLLSLGGLATVGVSSGPIPFATSIAQ  363 (464)
T ss_pred             hhccCchHHHHHHhcCch-------hHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence            999999999999999854       334455566666666666666655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=5.1e-25  Score=196.79  Aligned_cols=248  Identities=13%  Similarity=0.089  Sum_probs=189.5

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-----cchH-HHHHHHHHHHHHHHHHhhhh-hcchhHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKK-VLAWGVALWSLSTLLTPWAA-THSTASL   75 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~-~l~~~~~~~~~~~~~~~~~~-~~~~~~~   75 (339)
                      ..+|.+-+|.|.|.+++|++..+...  .+.++++|+++||+     |||| .+..+.++.+++.....+.. .++++.+
T Consensus        20 ~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l   97 (402)
T PRK11902         20 GTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPL   97 (402)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence            35788888999999999999777765  59999999999999     8875 78888888877777763321 1457778


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~  154 (339)
                      .+..++.++..+...+...+++.|++|+|+|+++.++...+.++|..+++.++..+.+. .|||..|++.++..++..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902         98 AGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999999999999998885 59999999988877665443


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCc
Q 019567          155 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVN  234 (339)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  234 (339)
                       ....||+++++++. ++.            +++...++++++|+|.++...+..++..........+.+.++.+++|++
T Consensus       178 -~~~~~e~~~~~~~~-~~~------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~  243 (402)
T PRK11902        178 -TLWAPEPEVPARPP-RSL------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFS  243 (402)
T ss_pred             -HHhcCCCccccccc-chh------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence             34455544322111 000            0011225678899999888777666655544433445556677778999


Q ss_pred             cchhhHhhHHhHH-HHHHHHhhhhhhhHHHHHh
Q 019567          235 LKQAAWFSAVPWG-TMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       235 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~  266 (339)
                      +++.+.+....+. +.+++.++.+++.||+++|
T Consensus       244 ~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        244 AGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999988766544 5788999999999999876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=1.7e-26  Score=231.41  Aligned_cols=237  Identities=16%  Similarity=0.155  Sum_probs=184.4

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHH---HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhh
Q 019567           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAW---GVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAM   93 (339)
Q Consensus        17 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~   93 (339)
                      ...++..+++.+.+.+.++++|+++||+|||+++..   ..+...+..+..  ...+|++.++++|+++|++.+...|..
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~--~~~~s~~~l~~~~~l~gi~~a~~~p~~  129 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYG--FHLNSVPLLFAALFLMGIHSALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHhhchHH
Confidence            346888889999999999999999999999997643   222222222222  235899999999999999999999999


Q ss_pred             HHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHH
Q 019567           94 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSE  173 (339)
Q Consensus        94 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (339)
                      .+++.+++|+++|++++++.+++.++|.++||++++++.+..+|++.|...++..++ .++.....|+.++..+......
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  208 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDLKIDR  208 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCeecc
Confidence            999999999999999999999999999999999999999999999999544444443 3444444555443221111000


Q ss_pred             HHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHH
Q 019567          174 LRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSG  253 (339)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  253 (339)
                       .         ..++....++.+.++|.++...+..++.++.......++|.|+++.+|.++.+.+.+.+...++.+++.
T Consensus       209 -~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~  278 (1140)
T PRK06814        209 -N---------IIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS  278 (1140)
T ss_pred             -c---------hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence             0         000011246778889999998888888888888888999999999899999999999999999999999


Q ss_pred             hhhhhhhHHHHHh
Q 019567          254 YMAGKASDSLIKA  266 (339)
Q Consensus       254 ~~~g~l~d~~~~~  266 (339)
                      ++.|++.|+..++
T Consensus       279 ~~~g~l~~~~~~~  291 (1140)
T PRK06814        279 FLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHHhCCceee
Confidence            9999999865544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=1.9e-25  Score=199.26  Aligned_cols=277  Identities=14%  Similarity=0.061  Sum_probs=194.9

Q ss_pred             chhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhh-----cchhHHH
Q 019567            4 AVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AAT-----HSTASLL   76 (339)
Q Consensus         4 ~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~-----~~~~~~~   76 (339)
                      .+|. +.+++|.|+.+.|++.+.+.++..+++++.|+++||+|||+.++.+....+++...... ...     +....++
T Consensus        24 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
T TIGR00882        24 FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI  103 (396)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3444 45679999999999999999999999999999999999999999877666554432210 111     2234456


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.|++.|++.+...+....+..|..  +++++.++......++|..++|.+++.+.+ .+||.+|++.+++.++..+..+
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            7788899988888888887776653  334567788888889999999999998865 5999999998888877665555


Q ss_pred             hhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhh---CC
Q 019567          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NV  233 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~  233 (339)
                      ...||+|++++.  + +     . .++++++.+.++.++++|+|+++...+..++....+.....+.+.|+++.+   +.
T Consensus       181 ~~~~~~~~~~~~--~-~-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  251 (396)
T TIGR00882       181 FAKPKAPSSATV--A-N-----A-LGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQ  251 (396)
T ss_pred             HhCCCCchhhhh--h-c-----c-cccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            444444322110  0 0     0 000111222345788999999887777666666666666677888887754   44


Q ss_pred             ccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHH
Q 019567          234 NLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVA  301 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (339)
                      +....+...+...+...++.+..+++.||+++|         .....+..+.++...+....++.+..
T Consensus       252 ~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~---------~~l~~~~~l~~l~~~~~~~~~~~~~~  310 (396)
T TIGR00882       252 GTRVFGYVTTMGELLNALIMFCAPLIINRIGAK---------NALLIAGTIMSVRIIGSSFATTALEV  310 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHhcCChHHH
Confidence            555678888888888888999999999999876         34455555555555555555555443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.8e-25  Score=193.97  Aligned_cols=275  Identities=19%  Similarity=0.183  Sum_probs=204.6

Q ss_pred             hHhHhC--CCccc----hhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hhcchhHHHHHHH
Q 019567            8 LAAKFG--WSSSF----LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRA   80 (339)
Q Consensus         8 i~~~~~--~s~~~----~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~   80 (339)
                      +.+++|  .|+++    .+.+.+.+.+|.++|++..+.++||+|||..+.+..++..++.++..++ ..+++++++++|+
T Consensus        45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~  124 (485)
T KOG0569|consen   45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRL  124 (485)
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            445566  33333    4677889999999999999999999999999999988888888776443 3578999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH--HHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT--PIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.|+..|......+.++.|..|.+.||......+.+..+|..++..++  ..+.+.-.|++.+....+++++..+. ..+
T Consensus       125 i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~  203 (485)
T KOG0569|consen  125 IVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPF  203 (485)
T ss_pred             HHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-Hhc
Confidence            999999999999999999999999999999999999999999997776  23334556999999988887775554 446


Q ss_pred             ccCCCCCCCC-CChHHHH--HH-----------------HhCCccccccCCCccHHHHhcchhHHHHH-----HHHHhhH
Q 019567          159 VTNDPCNSPF-VSKSELR--LI-----------------QAGKSDSVKKRNPPSLRHLLSKLPSWTVI-----IANITNN  213 (339)
Q Consensus       159 ~~~~~~~~~~-~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  213 (339)
                      .||+|+..-. ++++++.  ..                 ++.++++.++++..++++++++|+.+.-.     +....+.
T Consensus       204 ~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~  283 (485)
T KOG0569|consen  204 LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQF  283 (485)
T ss_pred             CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence            7999985221 1111110  00                 00111112223556789999986654432     2222233


Q ss_pred             HHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhh
Q 019567          214 WGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  293 (339)
Q Consensus       214 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (339)
                      .+.+....|...++++ .|++..++.+.....++...+..+++.++.||.|||         ++++.+..++.+..+++.
T Consensus       284 sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR---------pLll~~~~~~~~~~~~~~  353 (485)
T KOG0569|consen  284 SGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR---------PLLLISLSLMAVALLLMS  353 (485)
T ss_pred             cCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHH
Confidence            3456666777777777 599999999999999999999999999999999987         666666666666655554

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=1.5e-25  Score=201.47  Aligned_cols=274  Identities=16%  Similarity=0.077  Sum_probs=178.9

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcc-----hhHHHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHS-----TASLLAVRA   80 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~r~   80 (339)
                      .+++|+|+|+.+.|++.+.+.++..+++++.|+++||+|||+++.++..+.+++...... ..++.     .....++++
T Consensus        36 ~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (420)
T PRK09528         36 WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGI  115 (420)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456679999999999999999999999999999999999999998876665554332210 11111     111223333


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      ..|.+.....+....+..+ . .+++++.++......++|..++|++++.+.+ .+|+..|++.++++++..+..+...+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        116 YLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             HhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccc
Confidence            3343333333333333322 2 2456778889899999999999999998876 58999999988887776665555544


Q ss_pred             CCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhh---CCccch
Q 019567          161 NDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVNLKQ  237 (339)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~~~~  237 (339)
                      |++++.+.. +++.        +++++....+.++.+|+|+++...+..+.....+.....+.|.|+.+.+   +.+..+
T Consensus       193 ~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (420)
T PRK09528        193 DAPSTAKVA-NALG--------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRV  263 (420)
T ss_pred             cccchhhhc-cchh--------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH
Confidence            443321110 0000        0011112234566888888877666555555555555667787776643   455567


Q ss_pred             hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHH
Q 019567          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVA  301 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (339)
                      .+.+.+...+...++.++.|++.||+++|         +....+.++..+...++.+.++.+..
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~~~~~~~l~~~~~~l~~~~~~~~~~  318 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAK---------NALLLAGTIMAVRIIGSGFATGPLEV  318 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcc---------hhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            78888888888899999999999999976         34445555555565666655555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.94  E-value=3e-24  Score=195.01  Aligned_cols=327  Identities=15%  Similarity=0.138  Sum_probs=204.3

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhH-HHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTAS-LLAVRAF   81 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l   81 (339)
                      +...+++++|.+.++.+++.+.+.....+..+++|+++|| +||||++..+.+++.++++.++  .+++... ++++|.+
T Consensus        37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~--~~~~~~~ll~~~~~l  114 (489)
T PRK10207         37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG--MSLLKPDLIFIALGT  114 (489)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHH
Confidence            4556788999999999999999998889999999999999 9999999999999999999994  4555443 5589999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcc--hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +|+|.|...|...++++|.+|++  +|+++++++..+.++|..++|.+++++.++.|||+.|++.++ +.+..++.+...
T Consensus       115 ~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~  193 (489)
T PRK10207        115 IAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFAC  193 (489)
T ss_pred             HHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHc
Confidence            99999999999999999999876  457899999999999999999999999999999999998654 333333333333


Q ss_pred             cCCCCCC---CCCChHHH-HH-------------HH--hCCcccc----------------ccCCCccHHHHhcchhHHH
Q 019567          160 TNDPCNS---PFVSKSEL-RL-------------IQ--AGKSDSV----------------KKRNPPSLRHLLSKLPSWT  204 (339)
Q Consensus       160 ~~~~~~~---~~~~~~~~-~~-------------~~--~~~~~~~----------------~~~~~~~~~~~~~~~~~~~  204 (339)
                      ++..++.   +...+.+. ..             ..  .+.....                .++.+  .++.+|+|.+..
T Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~--~~~~~r~r~~~~  271 (489)
T PRK10207        194 RGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFK--LDKTGRNKMFVA  271 (489)
T ss_pred             chhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence            3221111   00000000 00             00  0000000                00000  114556665544


Q ss_pred             HHHH--HHhhHHHHHHHHHhhhhhhhhhhCCcc----chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHH
Q 019567          205 VIIA--NITNNWGYFVLLSWMPIYFNTVFNVNL----KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQ  278 (339)
Q Consensus       205 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  278 (339)
                      ..+.  .......+....+.++.+.++..+.+.    -....+.....+..++..++.+++.||+++|+.......|.  
T Consensus       272 ~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~--  349 (489)
T PRK10207        272 FVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF--  349 (489)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH--
Confidence            3322  333444455555777888775322211    12233444455666678888899999999875333222222  


Q ss_pred             HHHhhhhhhHhhh-------hhcc---cchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          279 SIGFIGPGVSLLC-------LNYA---KSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       279 ~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      ..++++.+++++.       ....   .+.++......+......+..+.......  .+++.+|.++|..
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~  420 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHH
Confidence            2333333333321       1111   12333333333333333344444344444  5557788888764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.94  E-value=4.6e-24  Score=193.68  Aligned_cols=329  Identities=12%  Similarity=0.079  Sum_probs=216.1

Q ss_pred             hhh-hHhH--hCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVP-LAAK--FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~-i~~~--~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +|. ++++  +|+|..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.  +.+++.+.++++|.
T Consensus        33 L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~--~~~~~~~~~~~~~~  110 (475)
T TIGR00924        33 LAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML--AMSIYPDLIFYGLG  110 (475)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH--HhcccHhHHHHHHH
Confidence            344 4555  89999999999999999999999999999999 899999999999999999988  55788888999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcch---hhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHE---RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +.|+|.|...+...++++|++|+++   |+++.++...+.++|..+||.+++++.++.|||+.|.+.++..++..+....
T Consensus       111 l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       111 TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998654   8889999999999999999999999999999999999987655444333322


Q ss_pred             hcc---CCCCCCCCCChHHHHHHH------------------hCCccc------------------cccCCCccHHHHhc
Q 019567          158 KVT---NDPCNSPFVSKSELRLIQ------------------AGKSDS------------------VKKRNPPSLRHLLS  198 (339)
Q Consensus       158 ~~~---~~~~~~~~~~~~~~~~~~------------------~~~~~~------------------~~~~~~~~~~~~~~  198 (339)
                      ..+   +.|++++..++++.+...                  ..+...                  ...++..+..+-.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (475)
T TIGR00924       191 GRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNK  270 (475)
T ss_pred             cccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhH
Confidence            221   222111111111100000                  000000                  00000011111112


Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch----hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHH
Q 019567          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ----AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  274 (339)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  274 (339)
                      .+.+..+.+...+....+....+.++.+.++..+.+...    .+.+.+...+..++..++..++..|..+|+.......
T Consensus       271 ~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~  350 (475)
T TIGR00924       271 MYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPL  350 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHH
Confidence            223444555555666666677777888877754443222    6678888888888888777776667766532221111


Q ss_pred             HHHHHHHhhhhhhHhhhhhc---------ccchhHHHHHHHHHHHHhhhcccchhhhhh-hcc-cchhhhhhhh
Q 019567          275 KIMQSIGFIGPGVSLLCLNY---------AKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQ-DFSTALQIQQ  337 (339)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~~g~~~g~q  337 (339)
                      |  +..+.++.++++.....         ..+.++......+....-.+..+....... .+| +.+|..+|.+
T Consensus       351 k--~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~  422 (475)
T TIGR00924       351 K--FTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW  422 (475)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence            1  24555555555555432         234444444444444444455555555555 655 5789888865

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.94  E-value=9.4e-25  Score=197.41  Aligned_cols=309  Identities=14%  Similarity=0.092  Sum_probs=215.5

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh----hcch-HHHHHHHHHHHHHHHHHhhhhhcc------h
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGK-KVLAWGVALWSLSTLLTPWAATHS------T   72 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r-~~l~~~~~~~~~~~~~~~~~~~~~------~   72 (339)
                      +.+.+.+++|+|+.+.|++.++..+..++..|+.|+++||    +||| +.++.+....+++.+++  ...++      .
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~--~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL--FTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH--HhCCCCCcchHH
Confidence            4566788899999999999999999999999999999998    6774 46777888888887777  33443      3


Q ss_pred             hHHHHHHHHHHhhhhcchhhhHHHHhhhC-CcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-------hccchHHHHHH
Q 019567           73 ASLLAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILF  144 (339)
Q Consensus        73 ~~~~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~w~~~f~~~  144 (339)
                      ..+++.+++.+++.+...++..++..|.. ++++|++..++.+.+..+|..+++.+.+.+..       ..+||+.+.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56677888899998888888888889987 46889999999999999988887776655542       45899999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhh
Q 019567          145 SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMP  224 (339)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (339)
                      ++++++..+..+...||++++.+..   +          +++.+..+.+++++++|+++...+..++..........+.+
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~~~~~---~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSEIPKN---I----------EKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQV  246 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCCCCcc---c----------ccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            9888887777666667654321110   0          01111123467788999999888888887777777666677


Q ss_pred             hhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhccc-chhHHHH
Q 019567          225 IYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAV  303 (339)
Q Consensus       225 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  303 (339)
                      .|.++..+ ++.+.+.+.....++.+++.++.+++.||+++|         .....+..+.+++.+.+...+ +.+...+
T Consensus       247 ~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T TIGR00792       247 YYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK---------ILFAGGILLMVLGYLIFFFAGSNLPLILV  316 (437)
T ss_pred             eeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            77766555 455667777777888999999999999999875         344455555555555544433 2233333


Q ss_pred             HHHHHHHHhhhcccchhhhhh-hc--------ccchhhhhhhh
Q 019567          304 LITIALSLSSFSQAGYLLNIQ-IA--------QDFSTALQIQQ  337 (339)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-~~--------p~~~g~~~g~q  337 (339)
                      ...+.....+...+...+... ..        +++.|..+|..
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  359 (437)
T TIGR00792       317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVR  359 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHH
Confidence            333333333333333333333 32        34567766654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.94  E-value=4.7e-25  Score=183.61  Aligned_cols=310  Identities=17%  Similarity=0.067  Sum_probs=207.2

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHH
Q 019567           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (339)
Q Consensus        16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (339)
                      ..-.|.+.+.|++.+.++++.+|.++||+|||+++.+++...++...+.  +.++|+..++++|++.|+..| ......+
T Consensus        67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~--~~S~~F~afv~aR~l~Gi~kg-nl~v~rA  143 (451)
T KOG2615|consen   67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLW--ALSRNFAAFVLARFLGGIFKG-NLSVIRA  143 (451)
T ss_pred             chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence            3456899999999999999999999999999999999999999999988  669999777788999999977 5678999


Q ss_pred             HHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh---hccchHHHHH----HHHHHHHHHHHHHhhccCCCCCCCC
Q 019567           96 LTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---TIGISGPFIL----FSSLGLLWLSTWTSKVTNDPCNSPF  168 (339)
Q Consensus        96 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~---~~~w~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~  168 (339)
                      +++|.+++|+|+++++..+...++|.++||.+++++.+   ..| +.+|..    ..++...-.....+++||+-+.+++
T Consensus       144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~  222 (451)
T KOG2615|consen  144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKR  222 (451)
T ss_pred             HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccchhh
Confidence            99999999999999999999999999999999999988   222 222222    1222222133445567887555444


Q ss_pred             CChHHHHHHHhCCcccc-ccCCCccHHHHhcchh-------HHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhH
Q 019567          169 VSKSELRLIQAGKSDSV-KKRNPPSLRHLLSKLP-------SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAW  240 (339)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  240 (339)
                      .++.. ...+....+++ .+.....-....||++       .....+-.+.+...+..+.++.+.+-.+.+|+++.+.|.
T Consensus       223 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~  301 (451)
T KOG2615|consen  223 NDEHS-TLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGK  301 (451)
T ss_pred             ccccc-chhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhee
Confidence            31111 00000000000 0000000112233332       112333444444455555555555546678999999999


Q ss_pred             hhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchh
Q 019567          241 FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL  320 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (339)
                      +.+..++.+.+.+.......||.+..       .+..+.....++...++++..............+..+......+...
T Consensus       302 vl~~tGl~m~~~ql~~~~~l~~~~~~-------~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt  374 (451)
T KOG2615|consen  302 VLSTTGLLMLVIQLALVPILPRYKGN-------IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLT  374 (451)
T ss_pred             eeehhhHHHHHHHHhccccccccccc-------hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHH
Confidence            99998888888887777777765522       23555666667777777777766665555544444444444445555


Q ss_pred             hhhh--hcccchhhhhhhh
Q 019567          321 LNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       321 ~~~~--~~p~~~g~~~g~q  337 (339)
                      ....  ..++++|+++|+-
T Consensus       375 ~Lv~~~~~~~qrG~~~Gi~  393 (451)
T KOG2615|consen  375 SLVHKYGPQSQRGTLNGIF  393 (451)
T ss_pred             HHHHhcCCcccchHHHHHH
Confidence            5555  4558899998864

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=1.2e-23  Score=188.26  Aligned_cols=304  Identities=11%  Similarity=0.026  Sum_probs=201.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +++.+.+++|+|.|.+|+|++.+++.++..+++++.|+++||+|| |+++.++.++.+++..+.  ...++++.+.+.|+
T Consensus        23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  100 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA--AQVTTPAGMFPVLL  100 (418)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHH
Confidence            355677888999999999999999999999999999999999965 778888888888888887  45789999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhh--------CCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRW--------FPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  152 (339)
                      +.|++.+...+...++..++        .....|.+..|      .+|.+++|.+++.+....+|+ +|++.++..++..
T Consensus       101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence            99998877777666654222        22223444444      478888898888774433454 4555565555544


Q ss_pred             HHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567          153 STWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (339)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  232 (339)
                      +. .+..||+|+.+++.+.+            .++..+.+.++++|+|+++...+..++..........+.+.|+++ .|
T Consensus       174 ~~-~~~~~e~~~~~~~~~~~------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  239 (418)
T TIGR00889       174 VF-ALTLPDIPVAKSTAKMS------------IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FG  239 (418)
T ss_pred             HH-HhcCCCCCCCccccccC------------HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hc
Confidence            43 44566664322111000            001111235678899998887777777666666666778888877 46


Q ss_pred             Ccc--------chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccc-h---hH
Q 019567          233 VNL--------KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS-P---AV  300 (339)
Q Consensus       233 ~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~  300 (339)
                      .++        +..+...+...+..+++.+..|++.||+++|         +++..+.++.++...++..... .   +.
T Consensus       240 ~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r---------~~l~~~~~~~~v~~~l~~~~~~~~~~~~~  310 (418)
T TIGR00889       240 RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK---------KVMLLSLVAWALRFGFFAYGDPEYFGYAL  310 (418)
T ss_pred             ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence            544        5568888888889999999999999999875         5556666666666555544321 1   11


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          301 AAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      .....++.....+...+.......  ..++++|+.+|..
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~  349 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLF  349 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            111122222222233333333333  4557788877754

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=3.2e-23  Score=187.96  Aligned_cols=311  Identities=16%  Similarity=0.160  Sum_probs=231.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh---hhcchhHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l   81 (339)
                      .+-+..+..-|+...+++..+..+...+.++++|.++||++|||+++.+.++..+..+...+.   -..+.+.+++.-++
T Consensus        33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl  112 (524)
T PF05977_consen   33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFL  112 (524)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            444556677788899999999999999999999999999999999999988776655544221   12467889999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|++.+...|.-++++.|..|+++..++.++.+...++...+||.++|.+...+|-.+.|.+.++..++........ ++
T Consensus       113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~-~~  191 (524)
T PF05977_consen  113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRW-KP  191 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cc
Confidence            99999999999999999999999999999999999999999999999999998998999988776555443333332 22


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      ++++++. .+ |.          ..++-...++-+.++|.........++...........+|.+.++.+|.++...|++
T Consensus       192 ~~~~~~~-~~-e~----------~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll  259 (524)
T PF05977_consen  192 PPPPSSL-PR-ER----------FFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLL  259 (524)
T ss_pred             ccccccc-ch-hh----------hhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHH
Confidence            2211111 11 10          001111234556667776666555555555555566778999999999999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (339)
                      .+..+++.++|.++.+++.+|++++         .++..+.+..+++.+.+.+.++.+.....+.+.+...........+
T Consensus       260 ~a~~gvGai~Gal~~~~l~~~~~~~---------~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t  330 (524)
T PF05977_consen  260 LAAFGVGAILGALLLPRLRRRLSSR---------RLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNT  330 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCcc---------hhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877654         4455666777777777887777776665555555555555555666


Q ss_pred             hhh--hcccchhhhhhhh
Q 019567          322 NIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       322 ~~~--~~p~~~g~~~g~q  337 (339)
                      ..+  ..++.+|.+++..
T Consensus       331 ~~Q~~~P~~~~GRv~si~  348 (524)
T PF05977_consen  331 LVQLSVPDWVRGRVFSIY  348 (524)
T ss_pred             HHHHhCCHHHHhHHHHHH
Confidence            666  5556799988764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=2.9e-23  Score=187.80  Aligned_cols=321  Identities=13%  Similarity=0.104  Sum_probs=220.4

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      ..++.+.+|+|- ..+..|+.+.+.++.+++.++.|+++|.+|||+.++.+.++..+|++++  +.++|...++++..+.
T Consensus        65 ~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~--atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   65 SILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC--ATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh--hcCCcHHHHHHHHHHH
Confidence            356889999995 4678899999999999999999999999999999999999999999999  7799999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh-ccC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK-VTN  161 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~-~~~  161 (339)
                      |+|.|... .....++|..|.|.|+...++.....-.....++.++..+..+.+|||.|++..+...+.+++.+++ .|+
T Consensus       142 GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP  220 (599)
T PF06609_consen  142 GVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP  220 (599)
T ss_pred             HHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99977654 4566689999999998888777766656666777887777777799999999988877655544433 333


Q ss_pred             CCCC-CCC-CCh-HHHHHHH---------------------hC---Cccc--------------------c---ccCCCc
Q 019567          162 DPCN-SPF-VSK-SELRLIQ---------------------AG---KSDS--------------------V---KKRNPP  191 (339)
Q Consensus       162 ~~~~-~~~-~~~-~~~~~~~---------------------~~---~~~~--------------------~---~~~~~~  191 (339)
                      ++++ +.+ ..+ ++..+.+                     ..   ..++                    |   ..+.+.
T Consensus       221 ~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl  300 (599)
T PF06609_consen  221 PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPL  300 (599)
T ss_pred             chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCc
Confidence            3221 111 111 1111110                     00   0000                    1   112333


Q ss_pred             cHHHHhcch-hHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc---hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhc
Q 019567          192 SLRHLLSKL-PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK---QAAWFSAVPWGTMAVSGYMAGKASDSLIKAG  267 (339)
Q Consensus       192 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  267 (339)
                      -..+++|++ .+....+..+.....++....+.|+.....++-++.   ..++.....+++..++..+.|.+..++++- 
T Consensus       301 ~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~-  379 (599)
T PF06609_consen  301 FPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI-  379 (599)
T ss_pred             CCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch-
Confidence            456788874 465556677777777888888889888877776653   567777788888888889999999887653 


Q ss_pred             cchHHHHHHHHHHHhhhhhhHhhhhhc--ccchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhh
Q 019567          268 YSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQI  335 (339)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g  335 (339)
                             |+.++.+.+.+....-++..  .++....+....+.....+..........+  ..+++-|+++|
T Consensus       380 -------Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~g  444 (599)
T PF06609_consen  380 -------KWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATG  444 (599)
T ss_pred             -------hHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHH
Confidence                   45555555544443333332  233333344444444444444444444444  44566777665

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=9.9e-23  Score=181.42  Aligned_cols=246  Identities=11%  Similarity=0.027  Sum_probs=182.7

Q ss_pred             cchhhhHhHhCCCccchhHHH--HHHHHHHHHHHhhhHH-HhhhhcchHHHHHHHHHH-HHHHHHHh-hhhhcc-hhHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQ--SSFLWGYIFSSVIGGA-LVDKYGGKKVLAWGVALW-SLSTLLTP-WAATHS-TASLL   76 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~--s~~~~~~~i~~~~~g~-l~dr~G~r~~l~~~~~~~-~~~~~~~~-~~~~~~-~~~~~   76 (339)
                      |.+|.+.+|.|.|.+++|.+.  +.......+.+|+.+. ..||+||||..++...+. +....... +....+ ...++
T Consensus        22 p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (390)
T TIGR02718        22 DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV  101 (390)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence            568899999999999999974  6667778788888844 799999999876555332 21122221 111222 33444


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      ..-.+.++..+...+...++..|..++++++...+....+..+|..+++...+++.++.|||..|++.+++.++..+..+
T Consensus       102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       102 GLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            55566667777777888888889988888899999999999999999999999999999999999999988877666555


Q ss_pred             hhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      +..|+++++++ .+                ++...+.++.+|+|.++......++..........+.+.|++| .|++++
T Consensus       182 ~~~~~~~~~~~-~~----------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~  243 (390)
T TIGR02718       182 WLKDRAVASPE-AP----------------LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLE  243 (390)
T ss_pred             HcCCCCcCccc-cc----------------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHH
Confidence            44444322111 00                0011246788999988888877788777777788889999988 699999


Q ss_pred             hhhHhhHHhHH-HHHHHHhhhhhhhHHHHHh
Q 019567          237 QAAWFSAVPWG-TMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       237 ~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~  266 (339)
                      +.+.+...... ..+++.++.|++.||++++
T Consensus       244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99998887765 5567789999999999876

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=192.29  Aligned_cols=262  Identities=18%  Similarity=0.170  Sum_probs=195.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLT   97 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i   97 (339)
                      +.+|+.+.+.++..+++++.|+++|++|||++++++.+.+.++.+++  +.++|+.+++++|+++|+|.|......+.++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~--~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~  167 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIII--ALAPSWYQLIVGRILTGLGVGGASVLAPVYI  167 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHhccchhhhhhcchhhH
Confidence            45899999999999999999999999999999999999999999999  6689999999999999999999999999999


Q ss_pred             hhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHH--
Q 019567           98 SRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSEL--  174 (339)
Q Consensus        98 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  174 (339)
                      +|..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. ..+.||+|++.-+..+.++  
T Consensus       168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~  246 (513)
T KOG0254|consen  168 SEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAK  246 (513)
T ss_pred             hhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHH
Confidence            9999999999999999999999999996665555433 58999999999888887777 7888999986332211111  


Q ss_pred             HHHH--hC--Ccc--------------cc-ccCCCccHHHHhc----chhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhh
Q 019567          175 RLIQ--AG--KSD--------------SV-KKRNPPSLRHLLS----KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF  231 (339)
Q Consensus       175 ~~~~--~~--~~~--------------~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  231 (339)
                      +...  ..  +.+              +. .......++++++    ++.+....+..+.+..+......|.+.++++. 
T Consensus       247 ~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~-  325 (513)
T KOG0254|consen  247 RSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA-  325 (513)
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc-
Confidence            0000  00  000              00 0011112344443    22233444555555556667778888887774 


Q ss_pred             CCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhh
Q 019567          232 NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  293 (339)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (339)
                      |.+... .......+....++..+...+.||+|||         .+++.+...+.++.+++.
T Consensus       326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr---------~lll~s~~~m~~~~~~~~  377 (513)
T KOG0254|consen  326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRR---------KLLLFGAAGMSICLVILA  377 (513)
T ss_pred             CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccH---------HHHHHhHHHHHHHHHHHH
Confidence            665433 4445566677788888889999999875         666777777777666655

>PTZ00207 hypothetical protein; Provisional

Probab=99.91  E-value=2.6e-22  Score=182.74  Aligned_cols=329  Identities=13%  Similarity=0.054  Sum_probs=229.1

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh----cchhHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT----HSTASLLA   77 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~   77 (339)
                      +...|++++++|+|..+++++.+.. ......+++.|++.||+|+|+++.++.+++.+++++++++..    ++++.+++
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            3467899999999999999998874 455678888999999999999999999999999999955311    68999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      .|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++.+.+...+.+ .+|+..|++.+++.++..++...
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999996 789999999999999999865444433333 36889999999988887777777


Q ss_pred             hccCCCCCC-----CCCChHHHHH--------------------------------------------------------
Q 019567          158 KVTNDPCNS-----PFVSKSELRL--------------------------------------------------------  176 (339)
Q Consensus       158 ~~~~~~~~~-----~~~~~~~~~~--------------------------------------------------------  176 (339)
                      +.++.|...     ++.+++++..                                                        
T Consensus       204 ~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~  283 (591)
T PTZ00207        204 FMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTV  283 (591)
T ss_pred             heeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            666554221     1111221110                                                        


Q ss_pred             H------H---------h-C--C-c-c----------------cc-------c---cCCCccHHHHhcchhHHHHHHHHH
Q 019567          177 I------Q---------A-G--K-S-D----------------SV-------K---KRNPPSLRHLLSKLPSWTVIIANI  210 (339)
Q Consensus       177 ~------~---------~-~--~-~-~----------------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~  210 (339)
                      .      .         + .  + + +                +.       +   ++...++.+.+++..+|.+....+
T Consensus       284 ~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~  363 (591)
T PTZ00207        284 IVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIF  363 (591)
T ss_pred             HHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHH
Confidence            0      0         0 0  0 0 0                00       0   000125667778889999999999


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhCCccch--hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhH
Q 019567          211 TNNWGYFVLLSWMPIYFNTVFNVNLKQ--AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  288 (339)
Q Consensus       211 ~~~~~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (339)
                      +.........+.+.+..+..-|.+.++  ...+.++.++.+.+|++..|.++....+|+..+...|...+.+..+ +.+.
T Consensus       364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~  442 (591)
T PTZ00207        364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIIT  442 (591)
T ss_pred             HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHH
Confidence            998888888888888877743663333  3337789999999999999999855555442222344455555555 4444


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhh
Q 019567          289 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQ  334 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~  334 (339)
                      .+++..........+..++.+.+.|+..+....... +..++.|+..
T Consensus       443 ~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~y  489 (591)
T PTZ00207        443 MLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHY  489 (591)
T ss_pred             HHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHh
Confidence            444443332133444455556666777666666666 3337766643

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=6.1e-22  Score=182.79  Aligned_cols=299  Identities=15%  Similarity=0.077  Sum_probs=206.1

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcc
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      +.+..+.....+..+++.+|..+|+++.|+++||+|||++++.++++..++.+..  ++++|++.+++.|+++|++.+..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~--a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILT--AFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHH--HHhCcHHHHHHHHHHHHhhccch
Confidence            4455677788899999999999999999999999999999999999999999999  66999999999999999999999


Q ss_pred             hhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 019567           90 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV  169 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (339)
                      ......++.|++++++|+.+..+ ......+..++++.++++.+  +||+.+++..+++.+..+. ++..||+|++...+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHc
Confidence            99999999999999999999999 77777888888888888887  8999999999888876655 55667999864333


Q ss_pred             ChHHHH-----HH-HhC--Cccc---------------cccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhh
Q 019567          170 SKSELR-----LI-QAG--KSDS---------------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY  226 (339)
Q Consensus       170 ~~~~~~-----~~-~~~--~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (339)
                      .+.++.     .. +.+  ..+.               ...++...+.++++.|+.....+...+....+.....-++..
T Consensus       265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~  344 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN  344 (521)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence            222110     00 000  0000               011122456778888765554444444433222222222222


Q ss_pred             hhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchh---HHHH
Q 019567          227 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA---VAAV  303 (339)
Q Consensus       227 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  303 (339)
                      ..+ +|.+..   ......+..........+...|+.|||         .....+.....++.+...+.....   ..++
T Consensus       345 ~~~-lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (521)
T KOG0255|consen  345 VSG-LGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRR---------PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWI  411 (521)
T ss_pred             hhh-cCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            222 343332   222333336667777778888988654         666777777777777776654322   3444


Q ss_pred             HHHHHHHHhhhcccchhhhhh-hcc
Q 019567          304 LITIALSLSSFSQAGYLLNIQ-IAQ  327 (339)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~-~~p  327 (339)
                      ...++.+..+........... ..|
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~el~p  436 (521)
T KOG0255|consen  412 LPLLGKFFIGSAFNLIFLYSAELIP  436 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            455555555554444444444 444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.89  E-value=7.6e-21  Score=173.68  Aligned_cols=144  Identities=24%  Similarity=0.244  Sum_probs=123.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhh-cchhHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAAT-HSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~   82 (339)
                      ...+++++|+|+++.++..+.+........++.|+++|| +|||+++..+.++.+++..+++  .+ ++.+.+.++|+++
T Consensus        45 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~--~~~~~~~~l~~~~~l~  122 (500)
T PRK09584         45 AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA--WSGHDAGIVYMGMATI  122 (500)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence            455678999999999999988887767777899999999 5999999999999999998884  45 3566777899999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcch--hhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL  150 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~  150 (339)
                      |+|.|...+...+++.|++|+++  |..+++++..+.++|..++|.+++++.++.|||+.|.+.++..++
T Consensus       123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            99999999999999999997543  556889999999999999999999999999999999997764444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=3e-21  Score=160.29  Aligned_cols=311  Identities=17%  Similarity=0.132  Sum_probs=220.9

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      +.|...+..|.+..|..++......+..+++..+|..+|++|||+.+.+......+...+.  ..++|+..+++.|.+.|
T Consensus       100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is--~~spnf~~L~~f~~l~~  177 (528)
T KOG0253|consen  100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS--GASPNFASLCVFRALWG  177 (528)
T ss_pred             HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh--cCCCCeehhhHHHHHHh
Confidence            4677788889999999999999999999999999999999999999999999999999988  55999999999999999


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCC
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  163 (339)
                      +|.|+ .|...++-.|..|..+|...+-.. ..+.+|.+....++.....++||||.......+..+ +....+..||+|
T Consensus       178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ESp  254 (528)
T KOG0253|consen  178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYESP  254 (528)
T ss_pred             ccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccCc
Confidence            99999 899999999999999998887666 999999999999999999999999998888755444 444556679998


Q ss_pred             CCCCCCChHHHHH------HHh--------------------------CCccccccCCCccHHHHhcc---hhHHHHHHH
Q 019567          164 CNSPFVSKSELRL------IQA--------------------------GKSDSVKKRNPPSLRHLLSK---LPSWTVIIA  208 (339)
Q Consensus       164 ~~~~~~~~~~~~~------~~~--------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  208 (339)
                      +-.-.+.++++..      ...                          +.+.+..++......+++..   ++.......
T Consensus       255 Rf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~i  334 (528)
T KOG0253|consen  255 RFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRI  334 (528)
T ss_pred             chhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHH
Confidence            7421111111000      000                          00001122333445555432   233344455


Q ss_pred             HHhhHHHHHHHHHhhhhhhhhhh--CC---------------cc-chhhHh-hHHhHHHHHHHHhhhhhhhHHHHHhccc
Q 019567          209 NITNNWGYFVLLSWMPIYFNTVF--NV---------------NL-KQAAWF-SAVPWGTMAVSGYMAGKASDSLIKAGYS  269 (339)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~l~~~~--g~---------------~~-~~~~~~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~  269 (339)
                      +|...+.+++.........+...  +.               .. ....+. ..+..+....|.++.+++.||+|||   
T Consensus       335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK---  411 (528)
T KOG0253|consen  335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK---  411 (528)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch---
Confidence            66666677765554444444321  00               00 011111 2244567889999999999999976   


Q ss_pred             hHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh-hccc
Q 019567          270 LTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQD  328 (339)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~  328 (339)
                            ..+..+++.+.++.+++....+......+...+-++....+...+.... +.|.
T Consensus       412 ------kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  412 ------KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPT  465 (528)
T ss_pred             ------hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccch
Confidence                  6777888888888887776655544555555666666666666777666 6664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.87  E-value=2.5e-19  Score=160.19  Aligned_cols=274  Identities=13%  Similarity=0.121  Sum_probs=185.8

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh----hhcchHHHHHH-HHHHHHHHHHHhhhhhcchh-----
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKKVLAWG-VALWSLSTLLTPWAATHSTA-----   73 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~~l~~~-~~~~~~~~~~~~~~~~~~~~-----   73 (339)
                      .++++.+++|.++.+.+++..+..+...+.+|+.|+++|    |+||||.++.+ .....++..+.+  .+++..     
T Consensus        26 ~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~--~~~~~~~~~~~  103 (477)
T TIGR01301        26 LLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG--FAADIGHLFGD  103 (477)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH--hCchhhhhccc
Confidence            456677899999999999999999999999999999999    59999988875 555555556653  344432     


Q ss_pred             ------------HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchh--hHHHHHHHHHHHHHHHHHHhHHHHh--hhhc--
Q 019567           74 ------------SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHER--ASAIGICMGGFHLGNVVGLLLTPIM--LSTI--  135 (339)
Q Consensus        74 ------------~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~l~~~l--~~~~--  135 (339)
                                  ..+++-.+..++.....++..++++|..|+++|  +.+.++.+...++|..+|+.++++.  .+.+  
T Consensus       104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~  183 (477)
T TIGR01301       104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPF  183 (477)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence                        223333344557777888899999999998755  6799999999999999999999875  2221  


Q ss_pred             -----------cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhc-----c
Q 019567          136 -----------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLS-----K  199 (339)
Q Consensus       136 -----------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  199 (339)
                                 +.|..|++.++..++...+..+..+|.|..++++.+++  +.+    ++++.+....++++++     .
T Consensus       184 ~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~i~~~~~~mP  257 (477)
T TIGR01301       184 TKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--EAA----PPSKHGEEAFFGELFGAFKYLP  257 (477)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh--hcc----cccccchhhhHHHHHHHHHHCC
Confidence                       56889999888888888888888888765322111100  000    0011111123344433     2


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHhhhhhhhh-hhCCccch------h---h-HhhHHhHHHHHHHHhhhhhhhHHHHHhcc
Q 019567          200 LPSWTVIIANITNNWGYFVLLSWMPIYFNT-VFNVNLKQ------A---A-WFSAVPWGTMAVSGYMAGKASDSLIKAGY  268 (339)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~------~---~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  268 (339)
                      |.++.+++..++...+++.+..|.+.|..+ .++-++.+      .   | +-.....+...+.+++..++.+|+|+|  
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~--  335 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG--  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            678889999999999999999999999874 45543321      1   1 222333344445556667777777642  


Q ss_pred             chHHHHHHHHHHHhhhhhhHhhhhh
Q 019567          269 SLTLVRKIMQSIGFIGPGVSLLCLN  293 (339)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~  293 (339)
                            |.....+.++.++++....
T Consensus       336 ------k~~~~~s~~~~~~~l~~~~  354 (477)
T TIGR01301       336 ------KRLWGIVNIILAICLAATV  354 (477)
T ss_pred             ------hhHHHHHHHHHHHHHHHHH
Confidence                  3555566556665555554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=9.2e-19  Score=157.16  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=120.6

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHHh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVRAFFGL   84 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~   84 (339)
                      .+++++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.  ...+ +...+.++..+.++
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll--~~~~~~~~~~~l~l~li~i  112 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL--GASEIHPSFLYLSLAIIVC  112 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999 99999999999999998776  3232 22334445555666


Q ss_pred             hhhcchhhhHHHHhhhCCcc--hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  152 (339)
                      |.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+..||++.|.+.++..++..
T Consensus       113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            77777788889999999875  699999999999999999999999999999999999998766444433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.85  E-value=2.6e-19  Score=153.64  Aligned_cols=243  Identities=9%  Similarity=0.009  Sum_probs=172.3

Q ss_pred             hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh--------------
Q 019567           68 ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS--------------  133 (339)
Q Consensus        68 ~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~--------------  133 (339)
                      ..++++.++++-++.|.|.+...+..+.++++..++|++++.+++.+.++++|..++|.+++.+..              
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            357899999999999999999999999999999999999999999999999999999999988763              


Q ss_pred             --hccchHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHH
Q 019567          134 --TIGISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANI  210 (339)
Q Consensus       134 --~~~w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (339)
                        ..+|+++|++.+.+..+..+.+.+. .||.+++++   +++.          +++  ....++.+++|+++...+..+
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~---~~~~----------~~~--~~~~~~~~~~~~~~l~~~~~f  150 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV---ARVS----------SGD--TTQKTSAFQFTHLVLGALGIF  150 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc---cccc----------ccc--ccchhhHHhhHHHHHHHHHHH
Confidence              1479999997777655544433322 233211110   0000          000  011235677888988888888


Q ss_pred             hhHHHHHHHHHhhhhhhhhh--hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhH
Q 019567          211 TNNWGYFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVS  288 (339)
Q Consensus       211 ~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (339)
                      ++.....+...|.+.|+++.  +|+++++.+...+....+.++++++.+++.||++++         +.+..+..+..++
T Consensus       151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~---------~~l~~~~~l~~~~  221 (310)
T TIGR01272       151 VYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG---------RYLAFNAFLAVLL  221 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH---------HHHHHHHHHHHHH
Confidence            88889999999999999864  689999999999999999999999999999999876         2334444444444


Q ss_pred             hhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhhh
Q 019567          289 LLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQI  335 (339)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g  335 (339)
                      ..+....+..... ....+.+.+.+...+...+... ..|++.++.++
T Consensus       222 ~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asa  268 (310)
T TIGR01272       222 SIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSG  268 (310)
T ss_pred             HHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence            4444333333222 2333334444555555554444 55555555544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=1.6e-25  Score=203.20  Aligned_cols=260  Identities=18%  Similarity=0.160  Sum_probs=183.3

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc---chhHHHHHHHHHHhhhhcchhhhH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH---STASLLAVRAFFGLAEGVAMPAMS   94 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~g~~~~~~~~~   94 (339)
                      +.++..+...+|..+|+++.|.++||+|||+.+..+.++..+++++.  +.++   |++.+.++|+++|++.|...+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILI--AFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999  5588   999999999999999999999999


Q ss_pred             HHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc---cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCh
Q 019567           95 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK  171 (339)
Q Consensus        95 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (339)
                      .++.|..|+++|++..++.+.+..+|..++..++..+.+..   +||..+.+..+++++..+ ...+.||+|++.-.+.+
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGR  203 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccceeccccc
Confidence            99999999999999999999999999999988876554433   499999998888876544 44678999986432222


Q ss_pred             HHHHH--HHh--------CCccc------cccCCCccHHHHhcchh----HHHHHHHHHhhH-HHHHHHHHhhhhhhhhh
Q 019567          172 SELRL--IQA--------GKSDS------VKKRNPPSLRHLLSKLP----SWTVIIANITNN-WGYFVLLSWMPIYFNTV  230 (339)
Q Consensus       172 ~~~~~--~~~--------~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~  230 (339)
                      .++..  .++        ++.++      +.++.+..++++++++.    ............ .+......+.+..+++ 
T Consensus       204 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-  282 (451)
T PF00083_consen  204 DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-  282 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc-
Confidence            11110  000        00000      00011134666776643    222222233332 2334445566666555 


Q ss_pred             hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          231 FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       231 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      .+.+..  -.......+...++.++..++.||+|||         .+...+.....++...+
T Consensus       283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr---------~~~i~~~~~~~~~~~~~  333 (451)
T PF00083_consen  283 AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR---------KLLIIGLLLMAICSLIL  333 (451)
T ss_pred             cccccc--cccccccccccccccccccccccccccc---------ccccccccccccccccc
Confidence            566655  2222344455667777888999999976         45556666655555544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09669 putative symporter YagG; Provisional

Probab=99.85  E-value=5.5e-19  Score=159.97  Aligned_cols=243  Identities=14%  Similarity=0.061  Sum_probs=170.3

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh----hcch-HHHHHHHHHHHHHHHHHhhhhhcc------hh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGK-KVLAWGVALWSLSTLLTPWAATHS------TA   73 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r-~~l~~~~~~~~~~~~~~~~~~~~~------~~   73 (339)
                      .+...+++|+|+.++|.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++.  ...++      ..
T Consensus        33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~--f~~p~~~~~~~~~  110 (444)
T PRK09669         33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT--FYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH--HhCCCCCcchHHH
Confidence            456778899999999999999999999999999999998    7774 55667777777776654  22332      35


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhC-CcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-------hccchHHHHHHH
Q 019567           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFS  145 (339)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~w~~~f~~~~  145 (339)
                      .+++..++.+.+......+..++.+|+. ++++|.+..++...+..+|..+++.+...+..       ..+|+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            5666677777777777777889999998 45789998898888888888887765544332       346888888888


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhh
Q 019567          146 SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPI  225 (339)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (339)
                      +++++..+..++..+|+++++++                ++.+..+++++++|||+++......++............+.
T Consensus       191 ii~~v~~~~~~~~~~e~~~~~~~----------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y  254 (444)
T PRK09669        191 LLGVVLFFCCFFMTKERYTPEVD----------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLY  254 (444)
T ss_pred             HHHHHHHHHHhCCeEEecCCCCc----------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            88777666666555554322110                11112235778899999988877777665655544444444


Q ss_pred             hhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       226 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      |.+...+ +++..+.+.....+..+++.++.+++.||+++|
T Consensus       255 ~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~  294 (444)
T PRK09669        255 YVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRV  294 (444)
T ss_pred             eeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            4444333 233344445555567778888999999999876

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.85  E-value=4.8e-20  Score=166.08  Aligned_cols=295  Identities=18%  Similarity=0.191  Sum_probs=219.9

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh----hhcchH-HHHHHHHHHHHHHHHHhhhhh-c-------
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKK-VLAWGVALWSLSTLLTPWAAT-H-------   70 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~-~l~~~~~~~~~~~~~~~~~~~-~-------   70 (339)
                      ..+...+.+|+++...|.+.....+..++..|+.|.++|    |+|||| .++.+....+++.+++  ... +       
T Consensus        24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~ll--f~~~p~~~~~~~  101 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLL--FSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHh--hccccchhhhhh
Confidence            355677788999999999999999999999999999999    899765 5557888888877776  323 2       


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-------cchHHHH
Q 019567           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFI  142 (339)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-------~w~~~f~  142 (339)
                      ....+.+..++..++......+..++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..       +|++...
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            22345677777799999999999999999997 468999999999999998877776666555322       5999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHh
Q 019567          143 LFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  222 (339)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (339)
                      +.+++.++..+...+..+|++++.++              ++++.+..+.++++++||+++......++...........
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~~~~~--------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~  247 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSVEVTE--------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTF  247 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccccccc--------------cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhH
Confidence            99988888888777777772211111              0122233456888999999999999999988888888888


Q ss_pred             hhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhccc--chhH
Q 019567          223 MPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAV  300 (339)
Q Consensus       223 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  300 (339)
                      .+.|.++..|.+ ...+.+.....+..+++.++.++++||+|+|         +....+..+.+++.+++.+.+  +.+.
T Consensus       248 ~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (428)
T PF13347_consen  248 LPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKK---------KVYIIGLLLAALGFLLLFFLGPGSPWL  317 (428)
T ss_pred             HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccce---------eehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence            888888887766 5667777788888999999999999999876         455566666666666655554  5555


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhh
Q 019567          301 AAVLITIALSLSSFSQAGYLLNIQ  324 (339)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~  324 (339)
                      ..+...+.....+.......+...
T Consensus       318 ~~i~~~l~gi~~~~~~~~~~a~~a  341 (428)
T PF13347_consen  318 VLILFILAGIGYGAFFVIPWAMLA  341 (428)
T ss_pred             HHHHHHHhHhhhcccccccccccc
Confidence            444444444444444444444444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.84  E-value=8.7e-19  Score=159.69  Aligned_cols=248  Identities=12%  Similarity=0.052  Sum_probs=173.7

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh----hhcc-hHHHHHHHHHHHHHHHHHhhhhhcc------hh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGG-KKVLAWGVALWSLSTLLTPWAATHS------TA   73 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~-r~~l~~~~~~~~~~~~~~~~~~~~~------~~   73 (339)
                      .....+.+|+++.++|.+..+..+.-++..|+.|+++|    |+|| |+.++.+.+..+++..+.  ...++      +.
T Consensus        30 ~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll--f~~p~~~~~~~~~  107 (473)
T PRK10429         30 MYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL--FSAHLFEGTAQYV  107 (473)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH--HcCCCCCccHHHH
Confidence            44566778999999999999999999999999999999    6698 566777877777776655  22222      23


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhC-CcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-------hccchHHHHHHH
Q 019567           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWF-PSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFS  145 (339)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~w~~~f~~~~  145 (339)
                      .+++..++.+++......+..++..|.. ++++|.+..++...+.++|..+.+.+...+.+       ..+|+....+.+
T Consensus       108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~  187 (473)
T PRK10429        108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLI  187 (473)
T ss_pred             HHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            4556667778888888888999999998 57899999998777777776666655443322       224666666766


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhh
Q 019567          146 SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPI  225 (339)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (339)
                      ++.++..+..++..||+++..+...+           ++++......++.+++||+++......++..........+.+.
T Consensus       188 ~~~~~~~~~~~~~~~e~~~~~~~~~~-----------~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y  256 (473)
T PRK10429        188 AFFIVSTIITLRNVHEVYSSDNQVSA-----------EGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIY  256 (473)
T ss_pred             HHHHHHHHHHHcCceecCCccccccc-----------cccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            66666555555555665322110000           0011112224556778999888888888777777776677776


Q ss_pred             hhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       226 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      |.+...+ +....+.+.....+..+++.++.+++.||+|+|
T Consensus       257 ~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk  296 (473)
T PRK10429        257 YFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRR  296 (473)
T ss_pred             EEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            6665433 455566666666688889999999999999976

>PRK09848 glucuronide transporter; Provisional

Probab=99.83  E-value=3.1e-18  Score=155.31  Aligned_cols=264  Identities=14%  Similarity=0.049  Sum_probs=168.1

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh----cchHHH-HHHHHHHHHHHHHHhhhhh----cc--hh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY----GGKKVL-AWGVALWSLSTLLTPWAAT----HS--TA   73 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~----G~r~~l-~~~~~~~~~~~~~~~~~~~----~~--~~   73 (339)
                      .+.+++++|+++.++|.+.+...+..++..++.|+++||.    ||||.. ..+.+...+..++. +...    ++  ..
T Consensus        32 ~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  110 (448)
T PRK09848         32 LSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLV-FWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHH-HhCcCCCCcchHHH
Confidence            3567788899999999999999999999999999999996    777644 55555555444442 1111    11  22


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHH-----HHHHHHHhHHHHhhhhc--cchHHHHHHH
Q 019567           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFH-----LGNVVGLLLTPIMLSTI--GISGPFILFS  145 (339)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~-----~g~~~~~~l~~~l~~~~--~w~~~f~~~~  145 (339)
                      ..++...+.+++.+...++..++..+..+ +++|.+..++-..+.+     ++..++|.+.....+..  +|.....+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            34455667788888888888888777764 4678887766654433     44555555554332111  1211122333


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhh
Q 019567          146 SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPI  225 (339)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (339)
                      +++.+..+......||+++++.                 +++.....+++++|||+++...+..++....+.......|.
T Consensus       191 v~~~~~~~~~~~~~~e~~~~~~-----------------~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~  253 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVVRIV-----------------AQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLF  253 (448)
T ss_pred             HHHHHHHHHHHcCcEeccCCCc-----------------cCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhee
Confidence            3333333333333444432111                 00111224678999999999888888888888888888888


Q ss_pred             hhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc
Q 019567          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA  295 (339)
Q Consensus       226 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (339)
                      |+++.+|.++...+.......++.+++.++.+++.||+++|         ..+..+.++.+++.+.+.+.
T Consensus       254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~---------~~~~~g~~~~~i~~~~~~~~  314 (448)
T PRK09848        254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK---------NTFLIGALLGTCGYLLFFWV  314 (448)
T ss_pred             eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHHHHHHHHHc
Confidence            99888887766555544444566778889999999999865         44455555555555554443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.82  E-value=1.6e-17  Score=146.78  Aligned_cols=307  Identities=17%  Similarity=0.133  Sum_probs=211.4

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhc-chHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-GKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      |..|..-++.|.|.+|+|.+.+...+...++++++|.++||.+ +||.+.+..++.++.....  ...++++.+++.-++
T Consensus        23 p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~--~~~~~f~~~~~~~~l  100 (400)
T PF03825_consen   23 PYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL--AFSSSFWWLFVIMLL  100 (400)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            4456677888999999999999999999999999999999986 5777777777766665555  457889888888888


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhH-HHHhhhhccc---hHHHHHHHHHHHHHHHHHHh
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL-TPIMLSTIGI---SGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l-~~~l~~~~~w---~~~f~~~~~~~~~~~~~~~~  157 (339)
                      ..+...+..|...++.-+...  ++++-.|-.....++|..++... +..+....++   ...+++.+...++.... .+
T Consensus       101 ~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l  177 (400)
T PF03825_consen  101 FSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-AL  177 (400)
T ss_pred             HHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HH
Confidence            888888888888888888774  45666677777788887777554 2333333332   34555555544443332 33


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  237 (339)
                      ..|+.|++++.+++             .++....+..+++|+|++....+..++..........+.+.|+++.-|.+.+.
T Consensus       178 ~lp~~~~~~~~~~~-------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~  244 (400)
T PF03825_consen  178 FLPKTPPKRSAKES-------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST  244 (400)
T ss_pred             hCCCCccccccCCC-------------cccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH
Confidence            45666532221110             11122224467999999999888888888888888999999999963477777


Q ss_pred             hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-cchhHHHHHHHH----HHHHh
Q 019567          238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITI----ALSLS  312 (339)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~  312 (339)
                      .+.+.++..+..++.-...+++.+|++.+         .++..+.+..++=..++... ++.+.......+    =+...
T Consensus       245 ~g~~~~l~~~aEi~~f~~~~~~~~r~g~~---------~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf  315 (400)
T PF03825_consen  245 IGILWALGVVAEIPFFFFSGRFLKRFGIK---------WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF  315 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH
Confidence            88877787788888888889998888865         77778888888877777766 443333333332    22233


Q ss_pred             hhcccchhhhhh--hcccchhhhhhh
Q 019567          313 SFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       313 ~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      ++..........  .+++.+++.++.
T Consensus       316 ~~~~~a~~~yi~~~~p~~~~at~Q~l  341 (400)
T PF03825_consen  316 GLFHAASVRYIDRIAPPELRATAQGL  341 (400)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHH
Confidence            333333444444  444666776664

>TIGR00788 fbt folate/biopterin transporter

Probab=99.82  E-value=4.5e-19  Score=160.73  Aligned_cols=320  Identities=13%  Similarity=-0.032  Sum_probs=197.1

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhc-----chHHHHHHHHHHH-HHHHHHhhhhhcchh-HH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-----GKKVLAWGVALWS-LSTLLTPWAATHSTA-SL   75 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----~r~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~   75 (339)
                      ...|.+.+++|+|+++++...+...+...+-.+ +|.++||++     ||+.++++.++.+ +.....  +..++.. ..
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l--~~~~~~~~~~  123 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL--PGKVSSAKVA  123 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc--ccccchHHHH
Confidence            345677888999999999999999999988555 999999998     7788888876663 332222  3334543 34


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHH---HHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIG---ICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~---~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  152 (339)
                      .+..++.+++.+...+...++..|..+ |++....+   ......++|..+++.+++.+.+.++||..|++.+.+.++..
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            458899999999999999999999998 55544333   33333458999999999999999999999999888877663


Q ss_pred             HHHHhhccCCCC-CCCCCChHHHH--HHHhCCccccccCCCccHHHHhcchhHHHHHHHHHh-hHHHHHHHHHhhhhhhh
Q 019567          153 STWTSKVTNDPC-NSPFVSKSELR--LIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT-NNWGYFVLLSWMPIYFN  228 (339)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  228 (339)
                       ....+.+|+++ ..+...+++..  ........+..++.....++.+++|.++...+..++ .......... .-.+.+
T Consensus       203 -~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~-~f~~~~  280 (468)
T TIGR00788       203 -FVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGS-VFCATT  280 (468)
T ss_pred             -HHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCce-eEEEEc
Confidence             33445566541 11111000000  000000000001111234556778888775555554 2221111111 111333


Q ss_pred             hhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc----------cch
Q 019567          229 TVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA----------KSP  298 (339)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  298 (339)
                      +..|+++++.|......+++.+++....+++.+|++.|         ..+..+.++.+++.......          ++.
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r---------~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~  351 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR---------LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDE  351 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHHHHHHHhCceeeeeccccccCCCCe
Confidence            45799999999999998888888888888887777654         55555555555544332110          222


Q ss_pred             hHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          299 AVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      +.......+.....++..........  ..+++.|+.++..
T Consensus       352 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~  392 (468)
T TIGR00788       352 VFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALL  392 (468)
T ss_pred             eeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHH
Confidence            22222223333444455555555555  5556677776654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.81  E-value=8.4e-20  Score=156.08  Aligned_cols=312  Identities=15%  Similarity=0.129  Sum_probs=203.7

Q ss_pred             CCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc-----hhHHHHHHHHHHhhhhc
Q 019567           14 WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS-----TASLLAVRAFFGLAEGV   88 (339)
Q Consensus        14 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~g~~~   88 (339)
                      .++...+.+..+..+|..+++++.|++.||+|||+++...++++.++++++++...++     .+++...|++.|+|.|+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            3455678899999999999999999999999999999999999999999885432222     36788999999999999


Q ss_pred             chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh---------------ccchHHHHHHHHHHHHHHH
Q 019567           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---------------IGISGPFILFSSLGLLWLS  153 (339)
Q Consensus        89 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~---------------~~w~~~f~~~~~~~~~~~~  153 (339)
                      -+|.+.++.+|...+++||...+...+..+.|...|.+++-.+...               .-||..|-+..++++.. .
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-l  239 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-L  239 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-H
Confidence            9999999999999999999999999888888888888777554321               12999988877666553 3


Q ss_pred             HHHhhccCCCCCCCCCChHHHHHHHh---C---------CccccccCCCc---cHHHHhcc---hhHHHHHHHHHhhHHH
Q 019567          154 TWTSKVTNDPCNSPFVSKSELRLIQA---G---------KSDSVKKRNPP---SLRHLLSK---LPSWTVIIANITNNWG  215 (339)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~  215 (339)
                      ...+..||+++.....+++.++..++   .         ..++..+.+..   .+.+.+..   ++....+..+|+.-.+
T Consensus       240 y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDia  319 (538)
T KOG0252|consen  240 YFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIA  319 (538)
T ss_pred             HhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            44556677765431111110000000   0         00000001111   12222222   3455567788888888


Q ss_pred             HHHHHHhhhhhhhhhhCCccchhhH--------hhHHhH-HHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhh
Q 019567          216 YFVLLSWMPIYFNTVFNVNLKQAAW--------FSAVPW-GTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPG  286 (339)
Q Consensus       216 ~~~~~~~~~~~l~~~~g~~~~~~~~--------~~~~~~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  286 (339)
                      ++..+.+....+++ .|+.+.+..+        ...+.. ...++|..+...++|++||+         +..+.++.++.
T Consensus       320 fy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~  389 (538)
T KOG0252|consen  320 FYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMT  389 (538)
T ss_pred             hhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHH
Confidence            88888888888876 4666554443        111111 22334566777889999965         88888898888


Q ss_pred             hHhhhhhcccch----hHHHHHHHHHHHHhhhcccch-hhhhh-hcc-cchhhhhhh
Q 019567          287 VSLLCLNYAKSP----AVAAVLITIALSLSSFSQAGY-LLNIQ-IAQ-DFSTALQIQ  336 (339)
Q Consensus       287 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~p-~~~g~~~g~  336 (339)
                      +..+.+....++    ....++..+..++..+..... ..... ..| +.||+--|+
T Consensus       390 i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGI  446 (538)
T KOG0252|consen  390 IFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGI  446 (538)
T ss_pred             HHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhH
Confidence            888888766542    222233333344443433332 23333 555 456665443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.79  E-value=7.2e-21  Score=173.31  Aligned_cols=265  Identities=17%  Similarity=0.173  Sum_probs=3.0

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh--------------
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--------------   67 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--------------   67 (339)
                      +..+.+++++|++++++.|++.+.+-++..+..++..++.+|-.|-|.+-.|.++++++++++.+-              
T Consensus        23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~  102 (539)
T PF03137_consen   23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASN  102 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccc
Confidence            456789999999999999999999999999999999999999999999999999999999988431              


Q ss_pred             ----------hh------------------------cchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHH
Q 019567           68 ----------AT------------------------HSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGIC  113 (339)
Q Consensus        68 ----------~~------------------------~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~  113 (339)
                                ..                        .-+..++++.++.|+|....++.+.+++-|..++++-+..+|+.
T Consensus       103 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~  182 (539)
T PF03137_consen  103 SNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGIL  182 (539)
T ss_dssp             -------------------------------------------------SSS----------------------------
T ss_pred             cccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhh
Confidence                      00                        00356889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHhhhhc----------------------cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCh
Q 019567          114 MGGFHLGNVVGLLLTPIMLSTI----------------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK  171 (339)
Q Consensus       114 ~~~~~~g~~~~~~l~~~l~~~~----------------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (339)
                      .+...+|.++|-.+++.+.+.+                      .|..-|++.+.+.++..+..+.+.++-|+..+...+
T Consensus       183 ~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~  262 (539)
T PF03137_consen  183 YAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEE  262 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccch
Confidence            9999999999999988765311                      166667777877777777777665555544111111


Q ss_pred             HHH---H---HHHhC-Ccc-------ccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccch
Q 019567          172 SEL---R---LIQAG-KSD-------SVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ  237 (339)
Q Consensus       172 ~~~---~---~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  237 (339)
                      ++.   +   ..+++ +++       +..++-+...+++++||.+....+..........++.+++|.|++.+++.++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~  342 (539)
T PF03137_consen  263 KESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ  342 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            110   0   00000 000       112333456788999999999999999999999999999999999999999999


Q ss_pred             hhHhhHHhHH-HHHHHHhhhhhhhHHHHHh
Q 019567          238 AAWFSAVPWG-TMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~~~g~l~d~~~~~  266 (339)
                      ++.+.....+ +.++|.+++|++.+|++-+
T Consensus       343 A~~l~G~v~ip~~~~G~llGG~ivkk~kl~  372 (539)
T PF03137_consen  343 ASLLTGIVSIPGAALGILLGGYIVKKFKLS  372 (539)
T ss_dssp             ------------------------------
T ss_pred             HHHHHhhhhcchhheehheEEEEEEEecCc
Confidence            9998877766 6678889999999998654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.79  E-value=2.9e-17  Score=142.72  Aligned_cols=282  Identities=16%  Similarity=0.145  Sum_probs=177.6

Q ss_pred             hhhhH-hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHH--HHHHH-Hhhh--hhcchh-HHHH
Q 019567            5 VVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWS--LSTLL-TPWA--ATHSTA-SLLA   77 (339)
Q Consensus         5 ~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~--~~~~~-~~~~--~~~~~~-~~~~   77 (339)
                      .|..- ++.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++.......  .+... ..+.  ...|.+ ..++
T Consensus        30 ~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~ii  109 (412)
T PF01306_consen   30 FPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAII  109 (412)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHH
T ss_pred             HHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34434 4589999999999999999999999999999999997776554432221  12222 1110  122322 2233


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +-+..|+......|...+++.++.  ++.+.-.|-...+.++|.+++..++|.+.+ .+-+..|++....+++..++...
T Consensus       110 g~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  110 GGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             TTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence            333344444445555566655553  555667788889999999999999999986 45567788766666655555555


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhh---CCc
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVF---NVN  234 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---g~~  234 (339)
                      ..|+++++.+..+.++.         ++++...++..+++|+|++|.+.+........+..+....+.|.++.+   +.+
T Consensus       187 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g  257 (412)
T PF01306_consen  187 LKPDVPPQAEVADALGA---------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQG  257 (412)
T ss_dssp             S---SSSSS-SSTTSSS---------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred             cCCcCchhhhhhccccc---------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            55554443222111110         011112234568899999999988888887888888877888877633   234


Q ss_pred             cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHH
Q 019567          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITI  307 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (339)
                      .+..|++.+..-+..++.-.+.+++.+|+|.|         ..+.++..++.+=.....+.++.+.....=.+
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---------~~Lllag~i~~iRi~~~~~~~~~~~i~~~klL  321 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---------NLLLLAGVIMAIRIIGSGFATNPWVISLIKLL  321 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH---------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            45577888888888888889999999999976         56666677777777777777777654444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=2e-18  Score=157.64  Aligned_cols=265  Identities=16%  Similarity=0.197  Sum_probs=211.6

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh------------h-
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------------A-   68 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~------------~-   68 (339)
                      ...+..+++.|++++++.|++.+.+-++..+...+..+...|..|-+.+-+|.++++++++++.+-            . 
T Consensus       117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~  196 (735)
T KOG3626|consen  117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVI  196 (735)
T ss_pred             hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhh
Confidence            345778999999999999999999999999999999999999999999999999999999998431            0 


Q ss_pred             -----hc-----------------------------c--h-hHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHH
Q 019567           69 -----TH-----------------------------S--T-ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIG  111 (339)
Q Consensus        69 -----~~-----------------------------~--~-~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~  111 (339)
                           .+                             +  + ..++++.++.|+|....++.+.+|+-|...+++-...+|
T Consensus       197 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  197 KQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             hccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHH
Confidence                 00                             0  1 256789999999999999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhc-------------------cchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChH
Q 019567          112 ICMGGFHLGNVVGLLLTPIMLSTI-------------------GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS  172 (339)
Q Consensus       112 ~~~~~~~~g~~~~~~l~~~l~~~~-------------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (339)
                      +......+|.++|-.+++++.+.+                   .|..-|++.+.+.++..+..+++.++.|+..++.+.+
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~  356 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRAR  356 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhh
Confidence            999999999999999999876521                   1667788888888888887777755555543322221


Q ss_pred             HHHHHHhCCc-ccc-------ccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHH
Q 019567          173 ELRLIQAGKS-DSV-------KKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAV  244 (339)
Q Consensus       173 ~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  244 (339)
                      +.+..+.+.+ .++       -++-+...+++++||.+....+...+....+.++.+++|.|+++++|.++..+..+.+.
T Consensus       357 ~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~  436 (735)
T KOG3626|consen  357 DLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGS  436 (735)
T ss_pred             hhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhh
Confidence            1111111110 000       11223456788999999999999999999999999999999999999999999999877


Q ss_pred             hHH-HHHHHHhhhhhhhHHHHHh
Q 019567          245 PWG-TMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       245 ~~~-~~~~~~~~~g~l~d~~~~~  266 (339)
                      ..+ +..+|.+++|++.+|+.-+
T Consensus       437 i~vp~~~~Gi~lGG~iikkfkl~  459 (735)
T KOG3626|consen  437 IGVPAAAVGIFLGGLIIKKFKLS  459 (735)
T ss_pred             hhhhhhhhhhhccceeeeeeccc
Confidence            777 5567788999999988644

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.4e-18  Score=139.76  Aligned_cols=310  Identities=17%  Similarity=0.193  Sum_probs=206.3

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~   82 (339)
                      ..+..+|.+++.++..++.+.|.....+..++.|++.|| +|.|..-++-+....++.++.+. ...+.+|.++.+|++.
T Consensus        67 q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F  146 (459)
T KOG4686|consen   67 QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF  146 (459)
T ss_pred             hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence            345667778888899999999999999999999999996 68887777766666777776522 1368899999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchH---------HHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG---------PFILFSSLGLLWLS  153 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~---------~f~~~~~~~~~~~~  153 (339)
                      |+|.-..-..-+++..-||..|+.+.++|+.....-+|+.+--.+.+++.+..+--.         .....+.......+
T Consensus       147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~sl  226 (459)
T KOG4686|consen  147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSL  226 (459)
T ss_pred             ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            999887878889999999999999999999999999998888777777776543111         11222222222221


Q ss_pred             HHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhc-chhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567          154 TWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLS-KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (339)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  232 (339)
                      ......--.      +++.|+....++.    ...+...+.++.. .|++|.+.+..++.....+-+...-|.++++.+|
T Consensus       227 ical~lg~~------D~rAerilh~e~g----~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfG  296 (459)
T KOG4686|consen  227 ICALSLGLS------DDRAERILHLEEG----FLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFG  296 (459)
T ss_pred             HHHHHhhhh------hhHHHHHHhhhcC----cccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Confidence            111111000      0011111111100    0000111222222 5789999999999999999999999999999999


Q ss_pred             CccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc-cchhHHHHHHHHHHHH
Q 019567          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA-KSPAVAAVLITIALSL  311 (339)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  311 (339)
                      +|+..++.+.+.......+.+++.|.++||.|++        .+....+.+....+-..+.++ -+++..   +++.+..
T Consensus       297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--------~~wv~~a~~~tl~~H~~l~Ft~lsPy~~---m~~lGLs  365 (459)
T KOG4686|consen  297 LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN--------LWWVASACILTLLGHSGLFFTFLSPYTS---MTFLGLS  365 (459)
T ss_pred             CChhhccchhhhhhhhhhhhhhhHHHhHhhhcce--------ehhHHHHHHHHHHHhhhHHhhhccHHHH---HHHHhhh
Confidence            9999999999999888999999999999999986        233333334444444444443 233332   2222223


Q ss_pred             hhhcccchhhhhh-hccc-chhhhhh
Q 019567          312 SSFSQAGYLLNIQ-IAQD-FSTALQI  335 (339)
Q Consensus       312 ~~~~~~~~~~~~~-~~p~-~~g~~~g  335 (339)
                      ........+.... +.|+ +-|+..|
T Consensus       366 ysllAcslWP~va~~vpE~qLGTayg  391 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYG  391 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHH
Confidence            3333333555555 5554 4455444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.77  E-value=9.4e-16  Score=138.08  Aligned_cols=305  Identities=16%  Similarity=0.049  Sum_probs=210.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHH-HHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWG-VALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTL   96 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~   96 (339)
                      ..++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+....+...++++...+.-++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888999999999999999999877665554 4444555555533223445555566666667777788888999


Q ss_pred             HhhhCCcchh--------------------------hHHHHHHHHHHHHHHHHHHhHHHHhhhh--------ccchHHHH
Q 019567           97 TSRWFPSHER--------------------------ASAIGICMGGFHLGNVVGLLLTPIMLST--------IGISGPFI  142 (339)
Q Consensus        97 i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~l~~~l~~~--------~~w~~~f~  142 (339)
                      +.|..+++++                          ++..+.-.....+|.++.-.+.-.+...        .+-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999988877                          8888888888888888877766444321        23588888


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHh
Q 019567          143 LFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSW  222 (339)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (339)
                      +.++.-++..+..++..||+|+.++.......-..       .-++-...++++.|.|+.....+..++..-+.......
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~-------g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~  303 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF-------GFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF  303 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH-------HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888763221111110000       01111235677777888999999999999999999999


Q ss_pred             hhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhh-hhHhhhhh-------c
Q 019567          223 MPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP-GVSLLCLN-------Y  294 (339)
Q Consensus       223 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~  294 (339)
                      ...|.++++|++..+...+.....+.+++|.++.|++.||+|.|       ++..+..+.... .++...+.       -
T Consensus       304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k-------~~~~l~~~l~~~~~i~~~g~~G~~~~~~g  376 (477)
T PF11700_consen  304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK-------TKRTLLISLILWIIIPLYGLFGFWPSFFG  376 (477)
T ss_pred             HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------hhHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            99999999999999999999999999999999999999999976       333333333333 22222222       0


Q ss_pred             ccchhHHHHHHHHHHHHhhhcccchhhhhh-hc-ccchhhhhhh
Q 019567          295 AKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IA-QDFSTALQIQ  336 (339)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-p~~~g~~~g~  336 (339)
                      ..+.+..++..++.+.+.+...+..-+... +. |++.+...|.
T Consensus       377 ~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgl  420 (477)
T PF11700_consen  377 LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGL  420 (477)
T ss_pred             cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHH
Confidence            234444445455555555555555555666 44 4556665554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.76  E-value=5.4e-16  Score=132.61  Aligned_cols=308  Identities=11%  Similarity=0.065  Sum_probs=210.0

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhc-----chHH-HHHHHHHHHHHHHHHhhh---hhc-------
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG-----GKKV-LAWGVALWSLSTLLTPWA---ATH-------   70 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G-----~r~~-l~~~~~~~~~~~~~~~~~---~~~-------   70 (339)
                      .+..|++++..-.+...+...+.. ...+..|+.+|+.+     ||.. +..|.+....+..+.+++   .+.       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            467899999998999988888765 57999999999999     7754 455666666666665442   122       


Q ss_pred             ch----hHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHH---
Q 019567           71 ST----ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFIL---  143 (339)
Q Consensus        71 ~~----~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~---  143 (339)
                      +.    ......-.+.|+|.+...++..++++|..|+|+|+++.++.....-+|.+++..+.+.+.+.++-.-..-+   
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22    13345567789999999999999999999999999999999999999999999999988887763332222   


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhh
Q 019567          144 FSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM  223 (339)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (339)
                      .+++.+...++..+- .|++..+....           +++++......+++++.+|+........++....++.-...+
T Consensus       164 ~a~i~~~l~~ia~wg-~E~r~~~~~~~-----------~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iL  231 (403)
T PF03209_consen  164 VALIALLLNLIALWG-QEPRRSRRAAA-----------AERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVIL  231 (403)
T ss_pred             HHHHHHHHHHHHHHh-cccCCcccccC-----------CCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHc
Confidence            222222222222222 22222111100           011222233467888889999988888888889999989999


Q ss_pred             hhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhh---cccchhH
Q 019567          224 PIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN---YAKSPAV  300 (339)
Q Consensus       224 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  300 (339)
                      -+|--|++|+++.+...+....+.+..++-...|++..|-.++        +.....++...+.++.++.   ...+.+.
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~--------~~~a~~G~~~~~~~f~lii~a~~~~~~~~  303 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK--------KRTAALGCLLGALAFALIILAGPLGSPWL  303 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--------hHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            9999999999999999999999999999999999887742221        1233345555554444433   3344444


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhh
Q 019567          301 AAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQI  335 (339)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g  335 (339)
                      ......+.+...+.+..+..+.+.  ..+++.|..+|
T Consensus       304 ~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG  340 (403)
T PF03209_consen  304 FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMG  340 (403)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHH
Confidence            444444444445555544444444  66788887665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=2.1e-16  Score=135.51  Aligned_cols=253  Identities=18%  Similarity=0.160  Sum_probs=196.1

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh----cchh--HH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT----HSTA--SL   75 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~----~~~~--~~   75 (339)
                      +++.....+-++ +....-|+.-+|++.+....+++-|+.||+|-|....++..+-++|..+--.+..    +.++  ..
T Consensus        65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~  143 (480)
T KOG2563|consen   65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLT  143 (480)
T ss_pred             hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhh
Confidence            344455666677 7777889999999999999999999999999999999999999999998733222    2334  66


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc------cchH--HHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI------GISG--PFILFSSL  147 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~------~w~~--~f~~~~~~  147 (339)
                      ..+..+.+.++-.....-..+...||++++|..+..+-..++.+|.+++-++...+..+-      .|..  .|+..+++
T Consensus       144 ~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l  223 (480)
T KOG2563|consen  144 HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECL  223 (480)
T ss_pred             HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHH
Confidence            788999999988887777888899999999999999999999999999988887776533      4554  35655666


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhh
Q 019567          148 GLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF  227 (339)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (339)
                      +.+.+++..+..+++|+.++.......+          +.+-..+.++.++|+++....+++......+++..+.+-.-+
T Consensus       224 ~~l~l~l~~~~~~~~P~tPps~s~~~~~----------~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l  293 (480)
T KOG2563|consen  224 AALLLALVLFVFTKKPPTPPSASQAALQ----------DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLAL  293 (480)
T ss_pred             HHHHHHHHHHhcCCCCCCCCchhHhhhh----------cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcc
Confidence            6555566666666666555443322211          112334678899999999998888888888887777776566


Q ss_pred             hhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          228 NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .. .|++...+|+......+++++++.+.|.+.||.++-
T Consensus       294 ~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f  331 (480)
T KOG2563|consen  294 CP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF  331 (480)
T ss_pred             cc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            55 488888999999999999999999999999998654

>PRK11462 putative transporter; Provisional

Probab=99.75  E-value=1.9e-15  Score=136.98  Aligned_cols=242  Identities=15%  Similarity=0.092  Sum_probs=171.4

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh----hcchH-HHHHHHHHHHHHHHHHhhhhhcc------hh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGKK-VLAWGVALWSLSTLLTPWAATHS------TA   73 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r~-~l~~~~~~~~~~~~~~~~~~~~~------~~   73 (339)
                      .....+.+|+++..+|.+..+.-+--++..|+.|+++||    +|||| .++++....+++.+++  ...++      ..
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll--f~~p~~s~~~~~~  110 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA--YSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH--HhCCCCCcchHHH
Confidence            344567789999999999999999999999999999995    68864 5556767777777665  32332      34


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-------cchHHHHHHH
Q 019567           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFS  145 (339)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-------~w~~~f~~~~  145 (339)
                      .+.+.-++..++......+-.++..|..+ +++|.+..++...+..+|..+++.+...+.+..       +|+....+.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            45666777788888888889999999986 678999999999999999888887765554433       5777777777


Q ss_pred             HHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhh
Q 019567          146 SLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPI  225 (339)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (339)
                      ++.++.....+...+|++++++.                 +....+.++.+++||.++......++..............
T Consensus       191 ii~~i~~~i~~~~~kE~~~~~~~-----------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y  253 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEAPPT-----------------TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMY  253 (460)
T ss_pred             HHHHHHHHHHHhcceeccCCCcc-----------------CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            77666665555555554322110                 0011224677888998887766666665555554444454


Q ss_pred             hhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          226 YFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       226 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      |.+...|. +...+.+.....++++++.++++++.||+++|
T Consensus       254 ~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk  293 (460)
T PRK11462        254 YVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV  293 (460)
T ss_pred             hhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            54444443 33344556677788888999999999999875

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.74  E-value=1.7e-15  Score=133.04  Aligned_cols=295  Identities=18%  Similarity=0.171  Sum_probs=220.1

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh----hcc-hHHHHHHHHHHHHHHHHHhhhhhcc------hhHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGG-KKVLAWGVALWSLSTLLTPWAATHS------TASL   75 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~-r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~   75 (339)
                      ...+.+|+++..+|.+..+--+--++..|+.|.++||    +|| |+.++.+.+..++.+.++  ..+++      ....
T Consensus        38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~--F~~p~~~~~~k~~ya  115 (467)
T COG2211          38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLL--FITPDFSMTGKLIYA  115 (467)
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHH--HcCCCcccCcchHHH
Confidence            3456689999999999999999999999999999995    776 456777878888888887  44553      3456


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-------hccchHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGISGPFILFSSL  147 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~w~~~f~~~~~~  147 (339)
                      ++...+.+++......+-.++.+|..+ ++||.+..++-..+.++|..+...+...+..       ..||+..-.+.+++
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi  195 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI  195 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence            677889999999999999999999984 5789999999999999997777666655543       34788888888888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhh
Q 019567          148 GLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF  227 (339)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (339)
                      ..+..+.+++-.+|++.+....++.            .+++...++..+++||++...++...+.........+....|.
T Consensus       196 ~~i~~l~~~~~v~ER~~~~~~~~~~------------~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~  263 (467)
T COG2211         196 GVILLLFCFFNVKERVVETQPTKTG------------VKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYV  263 (467)
T ss_pred             HHHHHHHHHHHhhcccCccccCccc------------ccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeE
Confidence            8888888888877776532211110            1111122345688999999988888888888888888888888


Q ss_pred             hhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhccc--chhHHHHHH
Q 019567          228 NTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLI  305 (339)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  305 (339)
                      +...|.+.............+.+++.++..++.+|+|+|         .....+.++..++.+.+.+.+  +.....+..
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk---------~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~  334 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK---------KLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL  334 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH---------HHHHHHHHHHHHHHHHHHhhcCcchHHHHHHH
Confidence            888888877777777777777788899999999999976         556666777777776666655  333334443


Q ss_pred             HHHHHHhhhcccchhhhhh
Q 019567          306 TIALSLSSFSQAGYLLNIQ  324 (339)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~  324 (339)
                      ++.....+...+..++...
T Consensus       335 ~i~~~g~~~~~~l~wam~~  353 (467)
T COG2211         335 IIAGVGTGIANPLPWAMVA  353 (467)
T ss_pred             HHHHHHhhccccccHHHhc
Confidence            4444555555555555555

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.74  E-value=1.1e-15  Score=133.33  Aligned_cols=153  Identities=18%  Similarity=0.302  Sum_probs=133.4

Q ss_pred             chhhhHhHhC----CCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhh--cchhHHH
Q 019567            4 AVVPLAAKFG----WSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAAT--HSTASLL   76 (339)
Q Consensus         4 ~~~~i~~~~~----~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~   76 (339)
                      +.-++..+++    .|+++..-+.+.|..-..+...++|+++||+ |+|+++..|.++..+|.+..  +.+  .+...+.
T Consensus        44 L~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L--~~~~~~~~~gl~  121 (498)
T COG3104          44 LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVL--AISSVSGPGGLY  121 (498)
T ss_pred             HHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH--hccccccccHHH
Confidence            3445566666    9999999999999988889999999999997 99999999999999999998  445  4688899


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcc--hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSH--ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      ++-.+.++|.|..-+...++++|.+|++  +|-..++++..+.++|+.++|.+.+++.+++||+..|-..++-..+.++.
T Consensus       122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999864  47778899999999999999999999999999999999988777665555


Q ss_pred             HHhh
Q 019567          155 WTSK  158 (339)
Q Consensus       155 ~~~~  158 (339)
                      .+..
T Consensus       202 f~~~  205 (498)
T COG3104         202 FLLG  205 (498)
T ss_pred             HHHc
Confidence            5443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.73  E-value=5.6e-17  Score=122.64  Aligned_cols=137  Identities=26%  Similarity=0.445  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCC
Q 019567           23 QSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFP  102 (339)
Q Consensus        23 ~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~  102 (339)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+..  ...++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF--ALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            345677888999999999999999999999999998888887  457899999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567          103 SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus       103 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +++|++..++.+....+|..++|.+.+.+.+..+|++.|++.+...++..+..+...||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999999999999999999888877766666655554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.70  E-value=2.5e-14  Score=120.62  Aligned_cols=240  Identities=15%  Similarity=0.134  Sum_probs=171.4

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      |-+-.+-+++|.++.|++.+....+....+..++.|.++||+|||+.-+.-+++.+++++..   ..+|++.++++|++.
T Consensus        55 pY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k---~~~~~~~L~~GRvlg  131 (354)
T PF05631_consen   55 PYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK---HSSNYPVLLLGRVLG  131 (354)
T ss_pred             chhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---hccccHHHHHHHHHH
Confidence            33445567899999999999999999999999999999999999999999999999988754   479999999999999


Q ss_pred             HhhhhcchhhhHHHH-hhh----CCcchhhHHHHHHH-HHHHHHHHHHHhHHHHhhhhccc--hHHHHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLT-SRW----FPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLST  154 (339)
Q Consensus        83 G~g~~~~~~~~~~~i-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~w--~~~f~~~~~~~~~~~~~  154 (339)
                      |++....+..-.++. .|.    +|++..+.-++... ..+++-.+.+..++.++.+..+.  ..+|....++..+..++
T Consensus       132 GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  132 GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            999999988888775 443    22233344444334 33444556666677777776654  78888877777776666


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHH-HhhhhhhhhhhCC
Q 019567          155 WTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNV  233 (339)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~g~  233 (339)
                      ....-+|+..+..+..+..             +.....++.+.+||+++.+.++..+.-..++.+. .|.|..- .  +-
T Consensus       212 I~~~W~ENyg~~~~~~~~~-------------~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~-~--~~  275 (354)
T PF05631_consen  212 ILKTWPENYGDTSSSSSLS-------------GSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD-P--DD  275 (354)
T ss_pred             HHhcccccCCCcccccchH-------------HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec-C--CC
Confidence            5555556544322111100             1111245678889999999999998888887766 4566543 2  11


Q ss_pred             ccchhhHhhHHhHHHHHHHHhhhhhhhH
Q 019567          234 NLKQAAWFSAVPWGTMAVSGYMAGKASD  261 (339)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d  261 (339)
                      +...-|++++.+....++|+.+..++..
T Consensus       276 ~~~P~GlIFssFM~a~MlGS~lf~~l~s  303 (354)
T PF05631_consen  276 EELPLGLIFSSFMVAMMLGSSLFSRLLS  303 (354)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            2335788888888888888877765544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.69  E-value=2e-15  Score=135.41  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=134.5

Q ss_pred             hhhHhHhCCCc--------cchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc---chhH
Q 019567            6 VPLAAKFGWSS--------SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH---STAS   74 (339)
Q Consensus         6 ~~i~~~~~~s~--------~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~   74 (339)
                      |...+|.|.++        .+.+...+...++..++.++.|+++||+|+|+++..+.++..++..+.... .+   +.+.
T Consensus       232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~~~~~~~~  310 (418)
T TIGR00889       232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG-DPEYFGYAL  310 (418)
T ss_pred             HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-CcchhhHHH
Confidence            34445666443        566899999999999999999999999999999999999988887666331 22   2456


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHH-HHHHHHHHHHHhHHHHhhhh------ccchHHHHHHHHH
Q 019567           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLST------IGISGPFILFSSL  147 (339)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~------~~w~~~f~~~~~~  147 (339)
                      +++.+++.|++.+...+....++.|++|+++|++++|+.+ ...++|..+||.+++.+.++      +||+..|.+.++.
T Consensus       311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~  390 (418)
T TIGR00889       311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY  390 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            7788999999999888999999999999999999999997 67889999999999999987      4699999999988


Q ss_pred             HHHHHHHHHhhccCCCCCCC
Q 019567          148 GLLWLSTWTSKVTNDPCNSP  167 (339)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~  167 (339)
                      .++..++.+++.+|+.++.+
T Consensus       391 ~~i~~~l~~~~~~~~~~~~~  410 (418)
T TIGR00889       391 IAILAVLFMIFFKYSHNAIK  410 (418)
T ss_pred             HHHHHHHHHHHhCCcccCCC
Confidence            88888888888887755443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.67  E-value=4.6e-15  Score=132.25  Aligned_cols=293  Identities=17%  Similarity=0.118  Sum_probs=207.8

Q ss_pred             HHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh--hcchhhhHHHHhhhCCcc
Q 019567           27 LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE--GVAMPAMSTLTSRWFPSH  104 (339)
Q Consensus        27 ~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~--~~~~~~~~~~i~~~~~~~  104 (339)
                      .+...+.++..|.++||+|||..+........+..+...+   ..+|.++    +.|+..  +.......++++|....+
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~---~~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF---QGYWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH---HHHHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            5777899999999999999999999999888888877633   3344333    554433  446677889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccc
Q 019567          105 ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDS  184 (339)
Q Consensus       105 ~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (339)
                      +|...+|+.+.....+..++|.+++.+.+..|.-.+|.+..+..++..+....++||+..++++.+..............
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~  224 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS  224 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence            99999999999999999999999999999999999999999999888888888889887665443200000000000000


Q ss_pred             cccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHH-hhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhh-hhhHH
Q 019567          185 VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLS-WMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAG-KASDS  262 (339)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~  262 (339)
                      ...+..+..+..-.+|..+.+....++.......-.. ..+.|++..++++.++.+.+.+..++...+++++.. .+...
T Consensus       225 ~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~  304 (463)
T KOG2816|consen  225 HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI  304 (463)
T ss_pred             hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111222222345555555555555544433233 557888888999999999999999999999987666 66666


Q ss_pred             HHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhh
Q 019567          263 LIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      ++.+         .....+...-.+....+.+....|..+..... ..+.....+...+...  +.++++|.++++
T Consensus       305 l~~~---------~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~  370 (463)
T KOG2816|consen  305 LGEK---------RLISLGLLSEFLQLLLFAFATETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQGKVFGI  370 (463)
T ss_pred             Hhhh---------hHhhHHHHHHHHHHHHHHHhccchhhhHHHHH-HHhhcchhHHHHhHHHhhcccccccchhhH
Confidence            7665         47788999999999999988887765554433 3344445555555555  777888887764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=1.8e-14  Score=128.76  Aligned_cols=155  Identities=20%  Similarity=0.200  Sum_probs=130.2

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      |...++.|.  .+.++..+.+.++..++.++.|++.||+|+|+.+..+..+..++.++.  ...+|.+.+++.+++.|++
T Consensus       240 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~G~~  315 (399)
T PRK05122        240 TLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLL--WLAPSPWMALIGAALTGFG  315 (399)
T ss_pred             HHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHh
Confidence            444455555  345677788889999999999999999999999999888888887777  4478888888999999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      .+...+.....+.|..|+++|++++++++....+|..+++++.+.+.+..||+..|++.++..++..+..+...+++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (399)
T PRK05122        316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPR  394 (399)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9988888888888999999999999999999999999999999999999999999999888877766666655444443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=6.5e-14  Score=119.77  Aligned_cols=302  Identities=13%  Similarity=0.018  Sum_probs=203.6

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHH-HHHHHHHHHHHHHhhhhh-cchhHHHHHHHHHHhhhhcchhhhH
Q 019567           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLA-WGVALWSLSTLLTPWAAT-HSTASLLAVRAFFGLAEGVAMPAMS   94 (339)
Q Consensus        17 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~g~~~~~~~~~   94 (339)
                      +..+...++..+..++.+|+.|.++|+.|+||... ....+..+..++..+... +.++..++.-.+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            34678888889999999999999999999766554 444555555555532212 1345556677888888888899999


Q ss_pred             HHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH--HHh-h---------------hhccchHHHHHHHHHHHHHHHHHH
Q 019567           95 TLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT--PIM-L---------------STIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        95 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~--~~l-~---------------~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +++.+..++++-++..++-.....+|+.+.-...  ..+ .               +..+-|..+.+.++-.++..+..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            9999999888777777665555666655544332  111 1               223468888888888888888888


Q ss_pred             hhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccc
Q 019567          157 SKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK  236 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  236 (339)
                      +..|+.++......+.-.+         .-++...+++++.+++.+....++.++..=+..........|..+.+|++..
T Consensus       218 ~~v~~~~~~~~~~~~~l~~---------g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~  288 (438)
T COG2270         218 LNVHDAEKISSPPPTALRN---------GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST  288 (438)
T ss_pred             hcccccccccccchHHHHH---------HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence            8777766532111111101         1112223577888888899999999999999999999999999988999999


Q ss_pred             hhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcc
Q 019567          237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQ  316 (339)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (339)
                      +...+.....+..++++++.|++.||++.|         .++..+.+......+...+.......+++.++.+.+.+...
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k---------~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSK---------PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---------eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            999999999999999999999999999976         33344444444333333333333333333333344444444


Q ss_pred             cchhhhhh--hcccchhhhhhh
Q 019567          317 AGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       317 ~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      +..-+...  +.|++.+.-.|.
T Consensus       360 A~SRSy~~~lvp~~k~~~fFgl  381 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGL  381 (438)
T ss_pred             HHHHHHHHHhCCCccccceeeh
Confidence            44444555  555666665554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.62  E-value=6.4e-14  Score=128.48  Aligned_cols=161  Identities=14%  Similarity=0.170  Sum_probs=121.3

Q ss_pred             hhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHH-HhhhhhcchhHHHHHHHHH
Q 019567            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL-TPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~   82 (339)
                      .|. +++++|.+..+.++..+...++..++.+..|+++||+|||+.+..+.++..++... .....+++...+++++++.
T Consensus       273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (490)
T PRK10642        273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML  352 (490)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            454 44678998888888888889999999999999999999999988887654443332 1112245677788899999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      |++.+........++.|.+|++.|++++++......++..++|.+.+++.+.. +|+.+++...+.+++..+.. ++.||
T Consensus       353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pe  431 (490)
T PRK10642        353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKE  431 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhcc
Confidence            98877777778888999999999999999754445566678898888887754 47877776666665555444 45588


Q ss_pred             CCCCC
Q 019567          162 DPCNS  166 (339)
Q Consensus       162 ~~~~~  166 (339)
                      +|++.
T Consensus       432 s~~~~  436 (490)
T PRK10642        432 TANRP  436 (490)
T ss_pred             ccCCC
Confidence            88764

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.60  E-value=8.3e-15  Score=131.85  Aligned_cols=150  Identities=11%  Similarity=0.144  Sum_probs=129.6

Q ss_pred             CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhh
Q 019567           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPA   92 (339)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~   92 (339)
                      +.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.++.+++.++.  ..++|.+.++..+++.|++.+...+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGS--GFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            5566788999999999999999999999999999999999999988888887  44788999999999999998888888


Q ss_pred             hHHHHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567           93 MSTLTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus        93 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      ...++.|.+|++.|+...+. ++....+|..++|.+.+++.+..||+..|.+.+++.++..++.+...+++++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            88999999999888887655 6778889999999999999999999999999888887766666655555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.59  E-value=5e-14  Score=126.70  Aligned_cols=159  Identities=12%  Similarity=0.003  Sum_probs=136.9

Q ss_pred             chhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            4 AVVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         4 ~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      ..|.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++..++.++.  ...++.+...++.++.
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF--GLMPMWILAVLCLALF  322 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH--HccchHHHHHHHHHHH
Confidence            34555566 89999999999999999999999999999999888888888888888877776  4578888888889999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      |++.+...+...+++.|..|+++|++++++++....+|..+||.+.+.+.+..|++..++..+...++..++.....++.
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            99988877888899999999999999999999999999999999999999999999999988887777666666666665


Q ss_pred             CC
Q 019567          163 PC  164 (339)
Q Consensus       163 ~~  164 (339)
                      ++
T Consensus       403 ~~  404 (417)
T PRK10489        403 RR  404 (417)
T ss_pred             cc
Confidence            54

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.58  E-value=3.6e-14  Score=125.54  Aligned_cols=145  Identities=21%  Similarity=0.193  Sum_probs=125.6

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc--hhHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS--TASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~   82 (339)
                      .++..++++.++.+.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.+...  ..++  ...++...++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML--FIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH--HcccchhHHHHHHHHHH
Confidence            3456688999988999999999999999999999999999999999999888888887763  3443  23345667888


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLW  151 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~  151 (339)
                      |++.+...+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            998888888888999999999999999999999999999999999999999999999999988766653

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=1.1e-13  Score=123.33  Aligned_cols=148  Identities=13%  Similarity=0.065  Sum_probs=123.3

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+++++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+.....  ...++.+.+++.+++.+++.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~  319 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LMAHSPAILLGLQLLNAIYI  319 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHH
Confidence            3567899999999999888888888899999999999999998887766655554444  34677888888999998888


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +...+....+..|.+| ++|++++++++...++|..++|.+++.+.+.+||+..|.+.++..++..+..+.
T Consensus       320 g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        320 GILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            8777778888899987 569999999999999999999999999999999999999887777665555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.57  E-value=1e-13  Score=130.71  Aligned_cols=141  Identities=21%  Similarity=0.226  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhh
Q 019567           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (339)
Q Consensus        20 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (339)
                      .....+..++..++.++.|+++||+|||+++..+.++.+++.++.  .+.++...+++.+++.|++.+..++...++++|
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~--~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFL--SFGNSESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667778999999999999999999999999999999998888  447778888888999999888888999999999


Q ss_pred             hCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus       100 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      ++|.++|++++|+......+|.+++|.+++.+.+. +...+|++.+++.++..++.. .+||+..
T Consensus       676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~  738 (742)
T TIGR01299       676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRG  738 (742)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence            99999999999999999999999999999888764 456778777777666555444 4476543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.57  E-value=1.1e-13  Score=121.13  Aligned_cols=150  Identities=32%  Similarity=0.454  Sum_probs=136.5

Q ss_pred             hhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchH-HHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            5 VVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKK-VLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      .|.+.+| +|.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+..  ...++.+...+..++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~  275 (352)
T cd06174         198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL--ALAPSLALLLVALLLL  275 (352)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHH
Confidence            4455555 4899999999999999999999999999999999999 9999999999999888  5578888999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      |++.+...+....++.|..|+++|++.+++.+...++|..+++.+.+.+.+..+|+..+.+.+++.++..+...
T Consensus       276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999999999999999999999999999999988877665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.56  E-value=1.7e-13  Score=122.79  Aligned_cols=151  Identities=24%  Similarity=0.193  Sum_probs=124.7

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|.+.++.|.++.+.+...+.+.++..++.++.|+++||+|||+.+..+.+...++....  ...++.+.+.+..++.|+
T Consensus       243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~  320 (406)
T PRK11551        243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAAL--AAAPSFAGMLLAGFAAGL  320 (406)
T ss_pred             HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence            467778889999999999999999999999999999999999999888777666666555  446777777788888999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHh
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +.+...+...+++.|.+|+++|++.+|+.+....+|..++|.+.+.+.++.+ |...++......++..+..+.
T Consensus       321 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        321 FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999999999999999999999999988654 555566555554444444443

>PRK12382 putative transporter; Provisional

Probab=99.56  E-value=1.7e-13  Score=122.23  Aligned_cols=149  Identities=20%  Similarity=0.242  Sum_probs=127.7

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      |...+|.+.+  +.++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++.  ...++.+..++..++.|++
T Consensus       240 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~  315 (392)
T PRK12382        240 SLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL--WLAPTAWVALAGAALTGAG  315 (392)
T ss_pred             HHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHH
Confidence            4444555654  35666777888889999999999999999999999998888888777  4478888888899999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      .+...+.....+.|.+|+|+|+++.++.+....+|..++|.+.+.+.++.||+..|.+.+.+.++..+..+..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            9988888888999999999999999999999999999999999999999999999999988877766655544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.56  E-value=6.8e-14  Score=128.75  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             hhhhH-hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      +|.+. +++|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+..+..+.......++.+...+..++.+
T Consensus       298 lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (496)
T PRK03893        298 LPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ  377 (496)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            45555 58999999999999999999999999999999999999998888777666554432111233444445555554


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL  150 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~  150 (339)
                      .......+....++.|.+|+++|++.+++......+|..++|.+++.+.+..||+..+...+....+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            4433445677788999999999999999999999999999999999999999999888765554433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.56  E-value=9.8e-14  Score=124.40  Aligned_cols=142  Identities=19%  Similarity=0.199  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHh
Q 019567           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTS   98 (339)
Q Consensus        19 ~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~   98 (339)
                      .+.+.+.+.++..++.+..|++.||+|||+.+..+..+..++.+..  ...++.+.+++.+++.|++.+...+...+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPM--SFVQTPLQLGILRFLLGAADGALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence            4556667778888999999999999999999999988877777666  44678888889999999999999999999999


Q ss_pred             hhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           99 RWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        99 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      +..|+++|++.+++.+....+|..+||.+++.+.+..||+..|++.+++.++..+..+...+++
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999899999999999999999999999999999999999999999988887776665544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=1.9e-13  Score=124.73  Aligned_cols=152  Identities=17%  Similarity=0.099  Sum_probs=116.6

Q ss_pred             hh-hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VV-PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .| .+++++|.|..+.++..+...++..++.++.|+++||+|||+.+.....+..++.....+...++.....+.+++.|
T Consensus       281 ~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  360 (467)
T PRK09556        281 SPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG  360 (467)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45 45677999999999999999999999999999999999999887765544444332221123456666778888888


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhh------------hccchHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLS------------TIGISGPFILFSSLGLL  150 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~------------~~~w~~~f~~~~~~~~~  150 (339)
                      +..............|.+|+++|+++.|+.+...++ |..++|.+.|.+.+            ..||+..|.+..+..++
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~  440 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG  440 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence            654333333346677999999999999999988886 77999999999999            57899999988777666


Q ss_pred             HHHHHH
Q 019567          151 WLSTWT  156 (339)
Q Consensus       151 ~~~~~~  156 (339)
                      ..+..+
T Consensus       441 ~~~~~~  446 (467)
T PRK09556        441 CICLMA  446 (467)
T ss_pred             HHHHHH
Confidence            554444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.54  E-value=5.2e-13  Score=118.66  Aligned_cols=147  Identities=17%  Similarity=0.208  Sum_probs=123.4

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      +|...++.|.++++.++..+...++..+++++.|++.||+|+|+.+..+..+..++.+..  .  + ........++.|+
T Consensus       223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~--~-~~~~~~~~~l~g~  297 (381)
T PRK03633        223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L--S-QAAMAPALFILGA  297 (381)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h--h-hHHHHHHHHHHHH
Confidence            566777889999999999999999999999999999999999999998888877766544  2  2 2334557788888


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.....|...+.+.|..|+++++...+......++|..++|.+++++.|+.+|++.|.+.+...++..+..+
T Consensus       298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            877788999999999998888888888888899999999999999999999999999998877765544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.54  E-value=4.9e-14  Score=127.92  Aligned_cols=147  Identities=17%  Similarity=0.110  Sum_probs=121.5

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHHHH--HHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAW--GVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +|.+.+|+|.++.+.++..+...++..+++++.|+++||.  ++|+....  +..+.+++.++.  ...+|++.+++.++
T Consensus       264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~~~~~i~~~  341 (455)
T TIGR00892       264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLC--ALAGDYTGLVIYCI  341 (455)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH--HHhchHHHHHHHHH
Confidence            4566678899999999999999999999999999999984  34443333  333334444455  44788888999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLS  153 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~  153 (339)
                      +.|++.+...+...+++.|.+|++++++.+++++...++|..++|.+++.+.+.. +|+..|++.+++.++..+
T Consensus       342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999877 599999998877665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.53  E-value=4.9e-13  Score=118.44  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=124.0

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+++++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..+.....  ...++.+.+++.+++.|++.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~  302 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL--AADNSLWALLMLQLLNAIFI  302 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999888877778889999999999999999988877666555444  34677888888999999999


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +...+....++.|..|+ ++++++++++....+|..++|.+++.+.+..||+..|++.++..++..+...
T Consensus       303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            98888888999999874 5679999999999999999999999999999999999998887766555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.52  E-value=9.3e-13  Score=117.39  Aligned_cols=152  Identities=22%  Similarity=0.161  Sum_probs=123.5

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      |.+++++|.|+.+.+++.+.+.++..+++++.|++.||+|||+.. .+..+..++..... ...++.+.+++..++.|++
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLL-PAANSEWHLSVLSIFWGIA  307 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHH
Confidence            445666899999999999999999999999999999999988754 44444444433221 2357778888899999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      .+...+.....+.|..| ++|++++++++....+|..+||.+++.+.+++|++..|++.+.+.++..+......+
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            88777778888888876 688999999999999999999999999999999999999998888776666655543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.52  E-value=5.6e-11  Score=103.24  Aligned_cols=322  Identities=11%  Similarity=0.015  Sum_probs=215.0

Q ss_pred             hhhhHhH-hCCCccchh-HHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            5 VVPLAAK-FGWSSSFLG-IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~-~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      .|.+.+. .|+++.|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.  .+.++...+-+..+.-
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~ll--l~~~sv~~mq~~q~~y  104 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLL--LFGTSVLAMQLMQFFY  104 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HHHCcHHHHHHHHHHH
Confidence            3445554 788887764 55566667778889999999999999999999999988888887  5689999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      |++.+. ..+-.+++=...|+++--++.+...+..-+|-.++..++..+...-  +.+...++.... .....++.+++|
T Consensus       105 g~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~-~~~a~~~~~fLP  182 (412)
T PF01770_consen  105 GLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS-VSLALLIALFLP  182 (412)
T ss_pred             HHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHHHHHcC
Confidence            999775 5677888888888888899999999999999999999998887633  344444443332 233333334455


Q ss_pred             CCCCCC---CCCCh------HHHHHHHhCCcc-----ccccCC-----------CccHHHHhcchhHHHHHHHHHhhHHH
Q 019567          161 NDPCNS---PFVSK------SELRLIQAGKSD-----SVKKRN-----------PPSLRHLLSKLPSWTVIIANITNNWG  215 (339)
Q Consensus       161 ~~~~~~---~~~~~------~~~~~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (339)
                      ..++..   +....      .+.+..++..++     ++++..           ..++++..++|+++...+.+.+...+
T Consensus       183 ~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcg  262 (412)
T PF01770_consen  183 MPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCG  262 (412)
T ss_pred             CCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhH
Confidence            544321   11000      000000000000     000000           12345566788898888888888888


Q ss_pred             HHHHHHhhhhhhhhh--hCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhh
Q 019567          216 YFVLLSWMPIYFNTV--FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN  293 (339)
Q Consensus       216 ~~~~~~~~~~~l~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (339)
                      ++...+|.....++.  -+-+....|..-+...+.+.++.+..|++..++.+.       ....+....++.+.+++++.
T Consensus       263 y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~-------~~l~l~~~S~l~a~~L~lm~  335 (412)
T PF01770_consen  263 YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW-------GELALGVFSLLQAGLLFLMS  335 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            888888877776664  133444567777777788888888888885555443       23444555556666677777


Q ss_pred             cccchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          294 YAKSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      +.++.+...+..++......+..+....-..  +..+.-|.+.|+.
T Consensus       336 ~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiN  381 (412)
T PF01770_consen  336 FTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGIN  381 (412)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeH
Confidence            7788887777777666666655554444333  5556666666543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.51  E-value=9.1e-13  Score=117.09  Aligned_cols=146  Identities=12%  Similarity=0.042  Sum_probs=130.1

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|...+|+|.++.+.|...+...++..+..++.+++.||+|+|+.+.++.++..+..+..  +.++|.+.++..++++|+
T Consensus       228 ~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~q~l~g~  305 (382)
T TIGR00902       228 SAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII--GAIEAFPLIFLLQILHCG  305 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH--HhHhhHHHHHHHHHHHHH
Confidence            455557899999999999999999999999999999999999999999999999998888  558999999999999999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHH-HHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      ..+...+....++.+. |+++|++..++++ ...++|..+++.++|++.|++|+ ..|+..+.+.++..++
T Consensus       306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999998 8899999999986 57889999999999999999996 6677777777655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.51  E-value=5e-13  Score=122.10  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=124.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh---hhc------chhHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATH------STASL   75 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~---~~~------~~~~~   75 (339)
                      .|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++.++.   ..+      +...+
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI  386 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence            567778899999888999999999999999999999999999999999988877777666311   112      22222


Q ss_pred             HHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 019567           76 LAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        76 ~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      ....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.++.+|++.|++.++++++..+..
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHH
Confidence            33333332222234466677789999999999999999999999999999999999999999999999998888877777


Q ss_pred             HhhccCCC
Q 019567          156 TSKVTNDP  163 (339)
Q Consensus       156 ~~~~~~~~  163 (339)
                      ++..||.+
T Consensus       467 ~~~~~~~~  474 (481)
T TIGR00879       467 YFFLPETK  474 (481)
T ss_pred             heecccCC
Confidence            66666654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.51  E-value=1.2e-12  Score=119.88  Aligned_cols=160  Identities=16%  Similarity=0.114  Sum_probs=122.1

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcch-h-HHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHST-A-SLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~r~l~   82 (339)
                      .|.+.+++|.+..+..+......+...++.++.++++||+|||+.++.+..+.+++.++......++. + ....+-++.
T Consensus       294 ~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~  373 (479)
T PRK10077        294 APEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY  373 (479)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            37777888988877777777888889999999999999999999999999998888777633211221 1 223334444


Q ss_pred             Hhhhhc-chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHH------hhhhccchHHHHHHHHHHHHHHHHH
Q 019567           83 GLAEGV-AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI------MLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        83 G~g~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      +.+.+. ..+....++.|.+|+++|++++|+......+|..+++.+.+.      +.+..+|++.|++.++++++..+..
T Consensus       374 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        374 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             HHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence            544443 336778999999999999999999999999998888666544      3467899999999888888777777


Q ss_pred             HhhccCCCC
Q 019567          156 TSKVTNDPC  164 (339)
Q Consensus       156 ~~~~~~~~~  164 (339)
                      +.+.||+++
T Consensus       454 ~~~~~e~~~  462 (479)
T PRK10077        454 WKFVPETKG  462 (479)
T ss_pred             HhccccCCC
Confidence            666676654

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.51  E-value=3.2e-12  Score=112.90  Aligned_cols=228  Identities=16%  Similarity=0.151  Sum_probs=158.8

Q ss_pred             hhhHh-HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHHHHHHHHHHHHHHH-hhhhh-c-chhHHHHHHH
Q 019567            6 VPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLT-PWAAT-H-STASLLAVRA   80 (339)
Q Consensus         6 ~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~r~   80 (339)
                      |++++ |.+.+.+..|++.++..++.+++++..|++..|.+. |+.++.+.++..+++++. .+... + ..+.++++|+
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~  138 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARI  138 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            33333 467778889999999999999999999999999997 889999999999999987 33322 2 5788999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh--cc-----------chHHHHHHHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--IG-----------ISGPFILFSSL  147 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~--~~-----------w~~~f~~~~~~  147 (339)
                      +.|+|.+ .....-+++++-...++|.++++..+.+..+|..+||.+...+..-  -|           +..+-++.+++
T Consensus       139 l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~  217 (488)
T KOG2325|consen  139 LTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAIL  217 (488)
T ss_pred             HcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHH
Confidence            9999966 4578899999988889999999999998999999999887665431  11           24466777888


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhh
Q 019567          148 GLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF  227 (339)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  227 (339)
                      .++..+......+|.+++..+...++.  .+++.++++.+..+.++.      ..+......+.....+....+..+...
T Consensus       218 ~i~~~v~i~~~f~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~------~~~vc~~~~~~~~~~~~~iet~~~~~~  289 (488)
T KOG2325|consen  218 WIIYIVIILFFFKEVYRGIIDKKKRSV--EEEKSDIEKVKKPKLDWV------AVLVCIFLRFVVNFIATTIETLSSALT  289 (488)
T ss_pred             HHHHHHHHHhheeecccCccccccccc--hhhccchhhhccCChhHH------HHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            888777777777887765533322111  011111111112222221      233444555555556666566667777


Q ss_pred             hhhhCCccchhhHhh
Q 019567          228 NTVFNVNLKQAAWFS  242 (339)
Q Consensus       228 ~~~~g~~~~~~~~~~  242 (339)
                      ...++++.+++-...
T Consensus       290 m~~y~w~~~~av~~~  304 (488)
T KOG2325|consen  290 MVMYGWTGSEAVLYN  304 (488)
T ss_pred             HHHhccccchHHHhh
Confidence            777788766654443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.48  E-value=2.9e-12  Score=114.23  Aligned_cols=158  Identities=12%  Similarity=0.045  Sum_probs=126.1

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|.+.+|+|.+..+.+...+.+.++..++.+..|++.||+|||+.+..+..+..++..+... ..++...+  .-++.|+
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~--~~~l~g~  304 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-LPLQLPVL--WAMVCGL  304 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-ccchHHHH--HHHHHHH
Confidence            46666778999999999999999999999999999999999999999888777776665421 12222222  2346788


Q ss_pred             hhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           85 AEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      +.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..| |...|.+.++.+++..+....+.||+
T Consensus       305 g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        305 GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888877777777775 5789999999999999999999999999999876 88888888877777766667777776


Q ss_pred             CCC
Q 019567          163 PCN  165 (339)
Q Consensus       163 ~~~  165 (339)
                      +++
T Consensus       385 ~~~  387 (393)
T PRK09705        385 FPQ  387 (393)
T ss_pred             ccc
Confidence            654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.46  E-value=3.5e-11  Score=110.23  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=119.9

Q ss_pred             hhhHhHhCCCccchhHHHH-HHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHh-hhhh-cchhHHHHHHHHH
Q 019567            6 VPLAAKFGWSSSFLGIVQS-SFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAAT-HSTASLLAVRAFF   82 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s-~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~r~l~   82 (339)
                      |.+.+++|.|+++.++... ...++..++.++.|+++||+|+|+.+.++.++..+..+... .+.. ++.+.+...-+++
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4456789999999999985 55689999999999999999999988776665555443321 1222 4555555566666


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      .++.+...+...++..+..+++.+++..++.+...++|..+++++.|.+.+..||+..|.+.++.+++..+.....
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666677788889999988999999999999999999999999999999999999999888887766655544

>PRK03699 putative transporter; Provisional

Probab=99.46  E-value=1.9e-12  Score=115.57  Aligned_cols=150  Identities=17%  Similarity=0.172  Sum_probs=124.5

Q ss_pred             hhhh-HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .|.+ ++++|.|+.+.++..+.+.++..++.+..|+++||++||+.+.....+..+...+.  ...+|...+.+..++.|
T Consensus       228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G  305 (394)
T PRK03699        228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF--VNTDDPSHLLYAILGLG  305 (394)
T ss_pred             HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHH
Confidence            4544 46789999999999999999999999999999999999999988877766665555  44677777777888899


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      ++.+..++...+...|..| +++++..+.......+|..++|.+.+.+.+..||+..+++.+++.++..+....
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        306 FFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            9888888888888888775 556778888888999999999999999999999999999888777666544433

>TIGR00897 2A0118 polyol permease family

Probab=99.42  E-value=1.2e-11  Score=110.67  Aligned_cols=151  Identities=18%  Similarity=0.197  Sum_probs=118.5

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHH-HHHHHHHHHHHHHhhh---hhcchhHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLA-WGVALWSLSTLLTPWA---ATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~   80 (339)
                      .|.+.+++|.++.+.++..+...++..++.+..|+++||+|||+.+. .+.+...++.+...+.   ..++.+..++..+
T Consensus       245 ~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~  324 (402)
T TIGR00897       245 LPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAI  324 (402)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence            56777889999999999999999999999999999999999988764 3333333333332111   1346677778888


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +.|++.+...+ ....+.|.. +++|++++|+.+....+|..++|.+++.+.+..||+..|++.++..++..++..+
T Consensus       325 ~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       325 ALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99998876544 456667765 4689999999999999999999999999999999999999988887776655544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=8e-12  Score=112.95  Aligned_cols=155  Identities=14%  Similarity=-0.017  Sum_probs=108.1

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHH-HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVL-AWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      +.+++|.|..+.+...+.+.++..++.++.|+++||+  ++|+.. ........+...........+........+..|+
T Consensus       270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  349 (434)
T PRK11663        270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGF  349 (434)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999  333332 2211111111111100112333333344444454


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCC
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTND  162 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  162 (339)
                      +...........+.|.+|+++|++.+|+.+....+|..++|.+.+++.++.||+..|++.++.+++..+..+...+++
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        350 FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            332222233456789999999999999999999999999999999999999999999999888877766665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=3.2e-12  Score=113.81  Aligned_cols=145  Identities=17%  Similarity=0.160  Sum_probs=115.8

Q ss_pred             hhhh-HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHH--HHhhhhhcchhHHHHHHHH
Q 019567            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTL--LTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~l   81 (339)
                      .|.+ ++++|.++.+.+...+...++..++.++.|+++||+|||+.+.....+..+...  ...+...++.+.+....++
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3444 477899999999999999999999999999999999999988765554443331  2211123566777788899


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGL  149 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~  149 (339)
                      .|++.+...+...+++.|.+|+++|+++.++ .+....+|..++|.+++.+.++.| |+..++......+
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            9999888899999999999999999999998 456677899999999999999888 8888777665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.41  E-value=1.3e-11  Score=112.66  Aligned_cols=150  Identities=21%  Similarity=0.198  Sum_probs=134.1

Q ss_pred             chhhhH-hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            4 AVVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         4 ~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      ++|.+. +++|.++...|++.+.+.+|..++++..+++.+|+++++.+..+.+.++++.+..  +++++.+...+.-++.
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~l--al~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLL--ALSPSFWLALIALFLA  317 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence            356654 5689999999999999999999999999999999999999999999999888888  5589999999999999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      |++.....+...+.+.+..|++.|||.++++++....+..+|..+.|.+.+.+|-+..+.+.++..++..++.
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            9999998889999999999999999999999999999999999999999999999999888776555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.40  E-value=6e-12  Score=112.58  Aligned_cols=137  Identities=17%  Similarity=0.171  Sum_probs=114.4

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..+..... +...++.+.+.+..++.|+..
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPV-FAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHH
Confidence            3556789999999999999999999999999999999999999988877653333322 123456667777777888777


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHH
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILF  144 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~  144 (339)
                      +...+....++.|.+|+++|++++|+.+....+|..++|++.+.+.++.| |+..+...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            77778888999999999999999999999999999999999999999988 87776653

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.39  E-value=1.1e-11  Score=111.98  Aligned_cols=136  Identities=15%  Similarity=0.208  Sum_probs=103.5

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|...++.|.++.+.+...+.+.++..++.++.|++.||+|||+.+..+.++..+..+..  ...++.....+.-.+.|+
T Consensus       254 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  331 (426)
T PRK12307        254 LPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL--FRIPQDNYLLLGACLFGL  331 (426)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--HHHccccHHHHHHHHHHH
Confidence            466667789999999999999999999999999999999999999988887766655544  212222112222233333


Q ss_pred             h--hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHH
Q 019567           85 A--EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFI  142 (339)
Q Consensus        85 g--~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~  142 (339)
                      +  .....+..+.++.|.+|+++|++++|+......+|..++|.+.+++.+..|+....+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        332 MATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT  391 (426)
T ss_pred             HHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence            2  223345566788999999999999999999999999999999999999888765433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=1.5e-11  Score=109.43  Aligned_cols=147  Identities=20%  Similarity=0.151  Sum_probs=110.5

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchH--HHH------HHHHHHHHHHHHHhhhhhcchhHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKK--VLA------WGVALWSLSTLLTPWAATHSTASLLAV   78 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~--~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (339)
                      .+++++|.|+.+.++..+...++..++.++.|++.||+|||+  ...      .+.++..+.....  ...++.+.....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  318 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT--NYVNIPYAALAL  318 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHH
Confidence            345678999999999999999999999999999999999996  111      1111111111111  112344444444


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~  156 (339)
                      ..+.+.+.+ ..+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |+..|.+.++..++..+..+
T Consensus       319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            445555544 788999999999999999999999999999999999999999999988 99999988887776555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.37  E-value=1.9e-11  Score=111.10  Aligned_cols=154  Identities=12%  Similarity=0.061  Sum_probs=106.6

Q ss_pred             hhhh-HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHHH-HHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLA-WGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +|.. +++.|.+..+.++....+.++..++.++.|+++||+  +||+... ....+..++.+...+...++.+...+..+
T Consensus       276 ~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  355 (452)
T PRK11273        276 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMI  355 (452)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence            4554 455789989999999999999999999999999999  5554322 22233333332221111234444445555


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHH-HHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV-VGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.|.+..........+..|.+|+++||+++|+.+....+|.. .+|.+.+.+.++.||+..|.+.++.+++.++.....
T Consensus       356 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        356 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            555543332233345677999999999999999988888765 479999999999999999998888777765554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.36  E-value=4.8e-11  Score=106.11  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=121.0

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      |...+|.|.++.+.|...+...++..+..++.|++.||+|+|+.+..+.++.+++.++.  ...++.+.+++..++.|++
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM--GSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHH
Confidence            44557789999999999999999999999999999999999999999999888887777  4578999999999999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHH-HHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHH
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLW  151 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~  151 (339)
                      .+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.|.+|+ ..|+..+++.++.
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            998889999998886 5677788888876 56678889999999999999887 4666666665543

>PRK09952 shikimate transporter; Provisional

Probab=99.36  E-value=6e-11  Score=107.35  Aligned_cols=154  Identities=12%  Similarity=0.035  Sum_probs=112.5

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh-h-cchhHHHHHHHHHHh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-T-HSTASLLAVRAFFGL   84 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~r~l~G~   84 (339)
                      .+++++|.++.+.............++.++.|+++||+|||+++..+.++..++.+...... . ++...+++..++.++
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            34567888887666666666677788899999999999999999888766555443321111 1 234444556677788


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHH-HHHHHHHHHHHHhHHHHhhhhc--cchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTI--GISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~--~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +.+...+...+++.|.+|.+.|+.+.++. +.+..+|..++|.+.+++.+..  +|+..+...++..++..+..+ ..||
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~  434 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence            88888888899999999999999888885 4445589999999999998743  488888877777766555544 3354

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.36  E-value=1.7e-11  Score=110.03  Aligned_cols=157  Identities=21%  Similarity=0.200  Sum_probs=125.0

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-----cchHHHHHHHHHHHHHHHHHhhhh--hcchhHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-----GGKKVLAWGVALWSLSTLLTPWAA--THSTASLL   76 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~   76 (339)
                      ..|.+++++|+++++.....+...+... ..++.|.++|-+     .||+-++++.++.+++.+..+...  ..+.....
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            4678899999999999999988888774 478899999976     366677777777765555553211  23566667


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCC--cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFP--SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      +.-++..+|.+.....+.+++.|...  +++|+...+.......+|.+++..++|.+.+..+++..|.+.+++..+..+.
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            77788899999999999999999883  3347888889889999999999999999999999999999988887777666


Q ss_pred             HHhhccC
Q 019567          155 WTSKVTN  161 (339)
Q Consensus       155 ~~~~~~~  161 (339)
                      ..+..+|
T Consensus       171 ~~~~~~e  177 (433)
T PF03092_consen  171 ALFLLEE  177 (433)
T ss_pred             HHHhhhh
Confidence            6666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.34  E-value=7e-11  Score=102.21  Aligned_cols=156  Identities=23%  Similarity=0.272  Sum_probs=129.6

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFF   82 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~   82 (339)
                      .+-|.+++..|.|.++++++.-.|.++..++..+.|+++|| +.|+.+.....+..+..+...+ ..++.+..++.-++-
T Consensus       233 Yi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~-~~~~~~~~~~~~~~w  310 (394)
T COG2814         233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF-TGASPALALALLFLW  310 (394)
T ss_pred             hHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence            45688888999999999999999999999999999999999 9999999887777777766533 355666666777777


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      |++...........+++ ..+|.+..+.+++....++|..+|..+++.+.+++|+....++.+++.++..++.+...+.
T Consensus       311 g~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         311 GFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87777666666666666 3358899999999999999999999999999999999999999999888877766655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.34  E-value=2.6e-11  Score=106.82  Aligned_cols=131  Identities=19%  Similarity=0.245  Sum_probs=116.4

Q ss_pred             chhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc-chhHHHHHHHH
Q 019567            4 AVVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH-STASLLAVRAF   81 (339)
Q Consensus         4 ~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l   81 (339)
                      ..|.+.++ +|.++.+.++..+...++..++.++.+++.||++||+.+..+..+.+++....  ...+ +.+.+++..++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  310 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVV--GLTPPNFPLFLVLWFA  310 (365)
T ss_pred             HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--HhhchhHHHHHHHHHH
Confidence            35666665 89999999999999999999999999999999999999998887777777776  3355 48888899999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (339)
                      .|++.+...+...+++.|..|+++|++..++.+....+|..++|.+++.+.+++|
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=1.2e-10  Score=105.36  Aligned_cols=149  Identities=21%  Similarity=0.220  Sum_probs=130.0

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcch--HHHHHHHHHHHHHHHHHhhhh--------hcchhHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK--KVLAWGVALWSLSTLLTPWAA--------THSTASLL   76 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r--~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~   76 (339)
                      .-.+++|.+..+...+.-...+...+++++.|++.||+|.|  +++..+++.+.+..+..  ..        .++.+.+.
T Consensus       307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g--~~G~~~~~~g~~~~~~f~  384 (477)
T PF11700_consen  307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG--LFGFWPSFFGLKSPWEFW  384 (477)
T ss_pred             HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--HHHhhhcccCcccHHHHH
Confidence            44568999999999999999999999999999999999999  89888888875555543  22        47788899


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~  155 (339)
                      +.-++.|+..|..++...++.+|..|+++.+..+|++....-....+||.+.+.+.+..| -|..+....++.++.+++.
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998776 8888888877777666555


Q ss_pred             Hh
Q 019567          156 TS  157 (339)
Q Consensus       156 ~~  157 (339)
                      +.
T Consensus       465 ~~  466 (477)
T PF11700_consen  465 FF  466 (477)
T ss_pred             hh
Confidence            43

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.31  E-value=9.4e-11  Score=106.02  Aligned_cols=134  Identities=19%  Similarity=0.190  Sum_probs=98.8

Q ss_pred             hhhhH-hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHH-Hhh-hhhcchhHHHHHHHH
Q 019567            5 VVPLA-AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL-TPW-AATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~r~l   81 (339)
                      .|.+. +++|.+..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... ..+ ...++........++
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            45544 448999999999999999999999999999999999999888765544332211 100 112344444455666


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHH-HHHHHHHHHHhHHHHhhhhccch
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMG-GFHLGNVVGLLLTPIMLSTIGIS  138 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~w~  138 (339)
                      .|++.+...+....++.|.+|+++|+..+++... +..++..++|.+.+++.++.|++
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            6777777667777889999999999999998544 44456778999999999988864

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=1.8e-10  Score=103.33  Aligned_cols=153  Identities=18%  Similarity=0.096  Sum_probs=118.8

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh---hcchhHHHHHHHHHHh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA---THSTASLLAVRAFFGL   84 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~   84 (339)
                      +.+++|.++.+.++......++..++.++.|++.||+++|+.+.++..+..++..+..+..   .++.+.+++.-++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            3577899999999988888888999999999999999999999998887777776653321   2356667788899999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +.+...+......... ++++|++..+..+....+|..+|+.+++.+.+..++....+...+..++.......+.++
T Consensus       322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9988777666665444 458999999999999999999999999999888887766565555555444443434333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.30  E-value=1.3e-10  Score=103.55  Aligned_cols=149  Identities=19%  Similarity=0.187  Sum_probs=114.5

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHH-HHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-h---hhcchhHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-A---ATHSTASLLAVR   79 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~r   79 (339)
                      .+...+|.|.+++++|++...... ...++.++.|++.||+|+|+.+..+..+..+..+.... .   ..++...+....
T Consensus       231 ~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (390)
T TIGR02718       231 SKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCS  310 (390)
T ss_pred             hhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHH
Confidence            345567789999999999888764 66677899999999999999998877665333332210 0   012333445555


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCc-chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPS-HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLS  153 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~  153 (339)
                      .+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+++.+.+..|++..|.+.+++.++...
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       311 AFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            666777777778888887777766 78999999999999999999999999999999999999988776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.30  E-value=8.1e-09  Score=96.66  Aligned_cols=155  Identities=19%  Similarity=0.250  Sum_probs=126.7

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcc------hhHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHS------TASLL   76 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~   76 (339)
                      +...+.+.+|.+.++...+...+.....+.+.++|.++|+ +|+++++.++.++..++..+..+...+.      ....+
T Consensus        10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l   89 (654)
T TIGR00926        10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence            4556778899999999999999999999999999999996 5999999999999999998874321111      13366


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcc---hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-------cchHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSH---ERASAIGICMGGFHLGNVVGLLLTPIMLSTI-------GISGPFILFSS  146 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-------~w~~~f~~~~~  146 (339)
                      ++-.+..+|.|+.-|...+...|.++++   +|-+.+.++..+.++|+.+++.+.+++.++.       +|...|.+.++
T Consensus        90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i  169 (654)
T TIGR00926        90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI  169 (654)
T ss_pred             HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence            7788888999999999999999999754   3677888999999999999999999887543       69999999988


Q ss_pred             HHHHHHHHHHhh
Q 019567          147 LGLLWLSTWTSK  158 (339)
Q Consensus       147 ~~~~~~~~~~~~  158 (339)
                      ..++..+.....
T Consensus       170 ~m~ia~lvf~~g  181 (654)
T TIGR00926       170 LMILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHHHh
Confidence            887766665543

>PRK10504 putative transporter; Provisional

Probab=99.30  E-value=7.6e-11  Score=107.83  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=110.2

Q ss_pred             hhhhHh-HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh-hcchhHHHHHHHHH
Q 019567            5 VVPLAA-KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-THSTASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~   82 (339)
                      .|...+ .+|.++.+.++....+.++..++.++.+++.||+|||+++..+..+..++..+..+.. .++.+.+.+..++.
T Consensus       284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (471)
T PRK10504        284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQ  363 (471)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            444444 5899999999999999999889999999999999999999999888887776653321 23344445667888


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      |++.+...+....++.+..|+++++.+.++.+....+|..+|+.+++.+.+..++
T Consensus       364 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        364 GMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            8998888889999999999999999999999999999999999999988776654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.29  E-value=1e-10  Score=104.54  Aligned_cols=142  Identities=12%  Similarity=0.125  Sum_probs=119.9

Q ss_pred             CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhh
Q 019567           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPA   92 (339)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~   92 (339)
                      +.+..+.|...+...+...++.+..|++.||+|+|+.+.++..+.++...+.  ..++|.+.+++.++++|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGS--SFATTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            4455667888898889999999999999999999999999999888877776  44788888899999999998776666


Q ss_pred             hHHHHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           93 MSTLTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        93 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      ...+..+..+++.++...+. .+....+|..+++.+++++.+..||+..|.+.+++.++..++..
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            77778888877777776665 67889999999999999999999999999999888877665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.28  E-value=4.8e-11  Score=109.02  Aligned_cols=147  Identities=18%  Similarity=0.110  Sum_probs=102.7

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcch-------HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK-------KVLAWGVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +.+++|.+..+.+.+.+.+.++..++.++.|+++||++||       ........+.++..++.  ...++.+..++.-+
T Consensus       279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~--~~~~~~~~~~~~~~  356 (476)
T PLN00028        279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL--GRANSLGAAIVVMI  356 (476)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHH
Confidence            4567899999999999999999999999999999999875       22223333333333333  33556555566666


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.+++.+...+...+++.+.. +++|+...|+.+.+..+|..++|.+.+ ..+..+|+..|++.+++.++..+..++.
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            667766555555666666765 478999999988877777777776543 2234569999999887777765555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=9.3e-11  Score=106.19  Aligned_cols=159  Identities=12%  Similarity=0.031  Sum_probs=108.9

Q ss_pred             hhhh-HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHH---HHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSL---STLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      .|.. +++.|.|+.+.++....+.++..++.+..|+++||+++|+....+..+..+   +..........+.+.....-+
T Consensus       274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T TIGR00712       274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI  353 (438)
T ss_pred             HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            3444 445789999999999999999999999999999999754322233322221   111110111223343334444


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHH-HHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLG-NVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      ..|.+.............|.+|+++|++++|+.+....+| ..++|.+.+.+.++.||...|++..+..++..+..+...
T Consensus       354 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       354 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            5555432222222346789999999999999998887776 578999999999999999999988887777777777777


Q ss_pred             cCCC
Q 019567          160 TNDP  163 (339)
Q Consensus       160 ~~~~  163 (339)
                      ||++
T Consensus       434 ~~~~  437 (438)
T TIGR00712       434 IGEK  437 (438)
T ss_pred             hhcc
Confidence            7664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.27  E-value=1.8e-10  Score=106.18  Aligned_cols=159  Identities=16%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             hhhhHhHhCCCccchhH------------HHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc--
Q 019567            5 VVPLAAKFGWSSSFLGI------------VQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH--   70 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~------------~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--   70 (339)
                      .|.+.++.|.+..+.+.            ......++..++.++.++++||+|||++++++..+.+++..+.++...+  
T Consensus       311 ~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~  390 (502)
T TIGR00887       311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS  390 (502)
T ss_pred             cHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56677788876543221            1233445666788899999999999999998888777766655332111  


Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh----------ccchHH
Q 019567           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST----------IGISGP  140 (339)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~----------~~w~~~  140 (339)
                      +...+...-+...++.....+....+.+|.+|.+.|+++.++.+....+|.+++|.+.+.+.+.          .++...
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  470 (502)
T TIGR00887       391 THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV  470 (502)
T ss_pred             hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHH
Confidence            1111111111112222223456677789999999999999999999999999999999988773          345667


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCC
Q 019567          141 FILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus       141 f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      |++.++.+++..+. .++.||++.
T Consensus       471 ~~i~~~~~~~~~i~-~~~lpEt~~  493 (502)
T TIGR00887       471 LEIFALFMFLGILF-TLLIPETKG  493 (502)
T ss_pred             HHHHHHHHHHHHHH-heEeccCCC
Confidence            88887777765554 356677654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.26  E-value=2.7e-10  Score=101.26  Aligned_cols=151  Identities=13%  Similarity=0.077  Sum_probs=112.1

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|.+.+++|.++.+.++..+...++..++.++.|++.||+|+|+.+..+..+..++.++... ..++.+...+..++.+.
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~  301 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFF-FGGMKTASLIFAFICCA  301 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence            35566678999999999999999999999999999999999999999888887777755422 24555666666777777


Q ss_pred             hhhcchhhhHH-HHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHhh
Q 019567           85 AEGVAMPAMST-LTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        85 g~~~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.....+.... ...+..+++.++...  .+....+|..+||.+++.+.+. .+|++.+.+.+.++++........
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        302 GLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            66554444443 344444445555543  4667889999999999999985 689999999877766654444333

>PRK10054 putative transporter; Provisional

Probab=99.25  E-value=1.1e-10  Score=104.20  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=120.7

Q ss_pred             HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcch
Q 019567           11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (339)
Q Consensus        11 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~   90 (339)
                      +.+.+....++..+.+.......+++.|++.||+++|+.+..+..+..++.....+ ..++.+.+++..++.|+|.+...
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIF-SGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHHHHHHHHHHHH
Confidence            44556667788888888887888899999999999999999998888887766622 13577777888999999998888


Q ss_pred             hhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCC
Q 019567           91 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (339)
Q Consensus        91 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  163 (339)
                      |.....+.+..|++.|+++.+..+ ...+|..+||.+++.+.|+.|....|++.+....+..++.....+|+|
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            888999999999999999988765 556899999999999999999888888876665555554444444444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.24  E-value=6.5e-10  Score=99.55  Aligned_cols=147  Identities=18%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             hhhHhHhCCCccchhHHHHHHH-HHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhh-cchhHHHHHH---
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFL-WGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AAT-HSTASLLAVR---   79 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~r---   79 (339)
                      +.+.+++|.++++.+++.+... .+..++.++.|++.||+|+|+.+..+..+..+..+.... +.. ++.+.+++.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4567779999999999987654 568899999999999999999888777766655433211 222 4555555554   


Q ss_pred             -HHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           80 -AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        80 -~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                       +..|++.+...+....++.+.+|.+++    +..+...++|...++.+++.+.+.+||+..|.+.+.++++..++.+
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence             345566666677777788887775554    4455556777777778899999999999999998888877655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.24  E-value=1.7e-10  Score=103.14  Aligned_cols=148  Identities=18%  Similarity=0.182  Sum_probs=115.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .|...+|.+.++.+.+++.+...++......+.+++.|| ++.|+.+..+..+.+++....  ..+++++.+.+...+.|
T Consensus       231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~l~~  308 (400)
T PRK11646        231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI--GMVSNLQQLFTLICLFY  308 (400)
T ss_pred             hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence            466556665577889999888887777666666777765 666777778887888777766  44788887878888899


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc---cc-hHHHHHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GI-SGPFILFSSLGLLWLST  154 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~w-~~~f~~~~~~~~~~~~~  154 (339)
                      ++.+...|...+++.|..|+++|++.+|+.+....+|..+||.+++.+.++.   +. ..++...++++++..+.
T Consensus       309 ~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        309 IGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            9988888999999999999999999999999999999999999999998864   33 45555555555554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.23  E-value=1.5e-10  Score=104.79  Aligned_cols=122  Identities=17%  Similarity=0.206  Sum_probs=103.5

Q ss_pred             CccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhH
Q 019567           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMS   94 (339)
Q Consensus        15 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (339)
                      ++.+.+++.+...++..++.++.++++||+|+|+++..+..+..++.+...+. .++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-GSNLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999988888877766321 24667777888899999999889999


Q ss_pred             HHHhhhCC-------cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           95 TLTSRWFP-------SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        95 ~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      ++++|..|       ++++|...|+.+....+|..+++.+.+.+.+..||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99988865       45679999999999999999999999999887776

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.23  E-value=8.2e-10  Score=98.53  Aligned_cols=146  Identities=21%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHH-HHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS-TLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .|.+.+++|.++++.+.....+.++..++.++.+++.||.+ |+.+..+..+..+. .++.  ...++.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLT--LWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHH
Confidence            36677889999999999999999999999999999999964 44444444443333 3433  23567778888899999


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      ++.+...+...+.+.+..| +++++..+......++|..+|+.+++.+.+..|++..+...+.+.++..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999999999989999886 567788888888899999999999999999999999998877766554433

>TIGR00895 2A0115 benzoate transport

Probab=99.22  E-value=1.9e-10  Score=102.60  Aligned_cols=125  Identities=22%  Similarity=0.330  Sum_probs=105.3

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      .|.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+..... ..+...+.. ...++.+..++..++.|+
T Consensus       273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~  350 (398)
T TIGR00895       273 LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GAVFAVLVG-STLFSPTLLLLLGAIAGF  350 (398)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHH-HHhhCHHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999999999955444433 333333331 225677778888999999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM  131 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  131 (339)
                      +.+...+...+++.|.+|+++|++++|+......+|..++|.+++.+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999998875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.22  E-value=6.5e-10  Score=100.51  Aligned_cols=151  Identities=16%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             hhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--hcchhHHHHHHHH
Q 019567            5 VVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--THSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l   81 (339)
                      +|. +++++|.+..+.+...+...++..+++++.|+++||+|||+.+..+.++..+.........  .++....+..-.+
T Consensus       266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (432)
T PRK10406        266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC  345 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            344 4566899988999999988888899999999999999999988776655433332110011  1222222222222


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~  156 (339)
                      .+...+...+....+++|++|+|.|+.++|+.+...++ .....|.+.+.+ +..| |...++..++..++..+..+
T Consensus       346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            33333444456678899999999999999998765553 344477777755 4445 55556655555555444444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=99.72  Aligned_cols=155  Identities=19%  Similarity=0.104  Sum_probs=121.3

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHHHHHHHHHHHHH-HHHhhhhhcchhHHHHHHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAWGVALWSLST-LLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .+.|+.|.|..+.++..+.|-.+...+++++|+++||+  |||....+...+....+ +..-++..+|+.+..++-++.|
T Consensus       278 YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iG  357 (448)
T COG2271         278 YLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIG  357 (448)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence            46678899999999999999999999999999999997  67765554443333333 3331222345688888888889


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +..-+-.-.......|..|++.-|.+.|+...+..+ |...+....+++.|.+||...|.+..+.+++..++.....+.
T Consensus       358 f~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         358 FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             HHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            877665566667788999999999999999999999 999999999999999999999999887777766555544443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.21  E-value=8.1e-10  Score=90.48  Aligned_cols=160  Identities=21%  Similarity=0.164  Sum_probs=122.8

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh-----cchhHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-----HSTASLL   76 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~   76 (339)
                      +..-|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.||+|++.++.+|.+...+|..+..++..     .++|.+.
T Consensus        22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            3456889999999999999999999999886 588999999999999999999999999988744322     4567888


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +..++.|.+.+...+.+.....+.|| ++||++.|+.-...+++..+-..+...+.+. +-...++..+....+..+...
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~  178 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAM  178 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHh
Confidence            88888888877777777777778897 6899999999999999988887776666554 333334444554444444444


Q ss_pred             hhccCCCC
Q 019567          157 SKVTNDPC  164 (339)
Q Consensus       157 ~~~~~~~~  164 (339)
                      .+.++.|+
T Consensus       179 ~~vr~~~~  186 (250)
T PF06813_consen  179 FFVRPVPP  186 (250)
T ss_pred             hheeccCC
Confidence            44444443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.19  E-value=6.4e-10  Score=97.27  Aligned_cols=148  Identities=11%  Similarity=0.122  Sum_probs=128.5

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHH
Q 019567           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (339)
Q Consensus        16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (339)
                      ....|.+.+...+.-++...+..++.+|+|.|+.++++..+.++=-.++  ++++|.+.+.+.+.+.|+-.+........
T Consensus       258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~--~~~~~~~~i~~~klLH~~e~~l~lva~fk  335 (412)
T PF01306_consen  258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGS--GFATNPWVISLIKLLHALEFPLLLVAAFK  335 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3558999999999999999999999999999999999999999988888  55899999999999999999999999999


Q ss_pred             HHhhhCCcchhhHHHHHH-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 019567           96 LTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCN  165 (339)
Q Consensus        96 ~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  165 (339)
                      ++++.+|+|..++...+. +...++|..+.+.++|.+.|+.|.+..|++.+.+.+...++..+.+++++++
T Consensus       336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999988888888774 7889999999999999999999999999999998888788777777665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=3.7e-10  Score=97.07  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=125.0

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhc
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~   88 (339)
                      ..++|++..+...+.-...+..++++++.|++.||+|.|+++..+.++..+.++..  .+...-..+.++-.+.|...|.
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~--~~~~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYL--IFLEGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHH--HHccccHHHHHHHHHHHHhcch
Confidence            35899999999999999999999999999999999999999999999999888876  4566667778888999999999


Q ss_pred             chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHH
Q 019567           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLS  153 (339)
Q Consensus        89 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~  153 (339)
                      .+..+-++..+..|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++..+..+
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~  423 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL  423 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh
Confidence            999999999999999999999999999999999999999998887543 66666665555444433

>TIGR00898 2A0119 cation transport protein

Probab=99.17  E-value=9.9e-10  Score=101.42  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcch--hHHHHHHHHHHhhhhcchhhhHHHHh
Q 019567           21 IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHST--ASLLAVRAFFGLAEGVAMPAMSTLTS   98 (339)
Q Consensus        21 ~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~g~~~~~~~~~~~i~   98 (339)
                      +......+....+.++.+++.||+|||+.+..+.++.+++.++..+  .++.  +...+.-++.+++.+..++....+..
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF--VPVDLYFLRTALAVLGKFGITSAFQMVYLYTA  436 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344555667788899999999999999999999988888877733  4433  45556667777777778888899999


Q ss_pred             hhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567           99 RWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus        99 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      |.+|++.|++++|+.+....+|.+++|.+.+ + +..++..++.+.+...++..+... +.||++.
T Consensus       437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~  499 (505)
T TIGR00898       437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKG  499 (505)
T ss_pred             ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCC
Confidence            9999999999999999999999999999988 4 445677888888877776655544 4566543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.17  E-value=1.3e-09  Score=97.19  Aligned_cols=144  Identities=17%  Similarity=0.111  Sum_probs=113.2

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+++.+|.|+.+.|++.+.+.++..++++..+++.||.++|+.+..+.. .++.....  ...++.+...+.-++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~--~~~~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLM--ALQHSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHH--HHHhHHHHHHHHHHHHHHhh
Confidence            3567789999999999999999999999999999999999988887753 34444444  33667777778888999999


Q ss_pred             hcchhhhHHHHhhhCCcch-hhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           87 GVAMPAMSTLTSRWFPSHE-RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      +...+...+.+.|..|+++ +|++.++.+...++|..++..+.+.+ +..|-+..+.+.+...++...+
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            9888888888888766554 79999999999999999999998865 5667666666544433333333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.16  E-value=2.4e-09  Score=94.96  Aligned_cols=155  Identities=23%  Similarity=0.312  Sum_probs=123.8

Q ss_pred             hhhHhHhC-CCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh-cchhHHHH----HH
Q 019567            6 VPLAAKFG-WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-HSTASLLA----VR   79 (339)
Q Consensus         6 ~~i~~~~~-~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~r   79 (339)
                      +..-+|.| .+....+.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.  +.. ++.+...+    ..
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~--a~~~~~~~~~~~~~~l~q  308 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY--AYFSDPWPFIVALQLLGQ  308 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHhcCCcHHHHHHHHHHH
Confidence            34456666 677777888888888888999999999999999999999999988877777  334 55444333    34


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHH-HHHHHHHHHHhHHHHhhhhcc------chHHHHHHHHHHHHHH
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMG-GFHLGNVVGLLLTPIMLSTIG------ISGPFILFSSLGLLWL  152 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~~~------w~~~f~~~~~~~~~~~  152 (339)
                      .++|+..+..+..+..++.+..|++.|+++.++++. ..++|..+|..++|++.|++|      |...+.+.+++.++..
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~  388 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVIL  388 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999999999999876 568999999999999999765      4456666777666666


Q ss_pred             HHHHhhccCC
Q 019567          153 STWTSKVTND  162 (339)
Q Consensus       153 ~~~~~~~~~~  162 (339)
                      +++..+.+|+
T Consensus       389 ~~f~~~fk~~  398 (400)
T PF03825_consen  389 VLFVILFKPK  398 (400)
T ss_pred             HHHHhhccCC
Confidence            6666555544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.15  E-value=3.4e-09  Score=94.60  Aligned_cols=160  Identities=18%  Similarity=0.208  Sum_probs=127.6

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh-hcchh------HHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA-THSTA------SLLAVR   79 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~r   79 (339)
                      ++-++-|++..+..+.+........+..+.+..+.||+|||+.++.+..+..+..++..... ..+..      ..+++.
T Consensus       295 ~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~  374 (485)
T KOG0569|consen  295 SIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAI  374 (485)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999999999888887763321 11111      123444


Q ss_pred             HHHHhhhhc-chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           80 AFFGLAEGV-AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        80 ~l~G~g~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      ++..+..+. .-|...-+.+|.+|++.|..++++......+...+-...-..+.+..|= +.|+...+.+++..+..++.
T Consensus       375 ~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~  453 (485)
T KOG0569|consen  375 FLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRY  453 (485)
T ss_pred             HHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHh
Confidence            444443333 3478888999999999999999999999999888888777778777775 88888889999999999999


Q ss_pred             ccCCCCCCC
Q 019567          159 VTNDPCNSP  167 (339)
Q Consensus       159 ~~~~~~~~~  167 (339)
                      +||++.+..
T Consensus       454 lPETkgr~~  462 (485)
T KOG0569|consen  454 LPETKGRTP  462 (485)
T ss_pred             CcccCCCCH
Confidence            999986543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.14  E-value=9.4e-10  Score=111.49  Aligned_cols=143  Identities=19%  Similarity=0.226  Sum_probs=120.5

Q ss_pred             hhhHhHhCCCcc-chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            6 VPLAAKFGWSSS-FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         6 ~~i~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      +.+.+++|.+.. +.+++.+...++..+++++.|++.||+++|+.+.++.++.+++.++.  ...++.+.+++..++.|+
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLL--PTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHH
Confidence            345677899998 99999999999999999999999999999999998888888877777  446788888899999999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-hccchHHHHHHHHHHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLGLL  150 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-~~~w~~~f~~~~~~~~~  150 (339)
                      +.+...+...+++.+..|+++||+++++.+....+|..+++.+++.+.. .+++...|++.+.+.++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999889999999999999999999999999999999888888776654 23555666665554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.13  E-value=6.9e-10  Score=99.63  Aligned_cols=142  Identities=18%  Similarity=0.172  Sum_probs=99.3

Q ss_pred             hhhhHhHh--CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHH-HHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            5 VVPLAAKF--GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKV-LAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i~~~~--~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      +|.+.+++  +.++.+.+...+...++..++.+..|+++||+++|+. ......+..++..+.  ...++....+.+-.+
T Consensus       265 ~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  342 (412)
T TIGR02332       265 TPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA--SATDHNLIQLLGIIM  342 (412)
T ss_pred             HHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHH
Confidence            56666665  5677888999999999999999999999999997774 344444444433222  112222222222233


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLG  148 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~  148 (339)
                      .++|.....+.......|.+|+|+|++++|+.+....+|..++|.+.+.+.+..| |++.|++.++..
T Consensus       343 ~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       343 ASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            3333333334444555678899999999999999999999999999999999774 999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.13  E-value=5.8e-10  Score=98.71  Aligned_cols=134  Identities=16%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHH-HHHHH-HHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLA-WGVAL-WSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      +++++|.++.+.++..+.+.++..++.++.|++.||..+ |+... ..... ..++..........+.....+..++.|.
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  322 (379)
T TIGR00881       243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGF  322 (379)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999998643 33222 22111 1111111100112345556667777777


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPF  141 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f  141 (339)
                      ......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       323 LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            665556666788999999999999999999999999999999999999999998764

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=1.1e-09  Score=96.28  Aligned_cols=129  Identities=16%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      +|.+.+|.|.|+.+.+...+.+.++..++.++.|++.||+ +||+.+..+..+..++.+..  ...++..... .-++.|
T Consensus       220 lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~l~g  296 (355)
T TIGR00896       220 LPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL--LFAPMHGLWA-WALVLG  296 (355)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH--HHhhhhHHHH-HHHHHH
Confidence            5667778899999999999999999999999999999999 56677777777777777666  3334333222 457889


Q ss_pred             hhhhcchhhhHHHHhhhCC-cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 019567           84 LAEGVAMPAMSTLTSRWFP-SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (339)
                      ++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.|+.|
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       297 LGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999888888777766554 4667899999998889999999999999998775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.12  E-value=3.9e-08  Score=87.21  Aligned_cols=307  Identities=10%  Similarity=-0.006  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh----hhh--c----chhHHHHHH---HHHHhhhhc-ch
Q 019567           25 SFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW----AAT--H----STASLLAVR---AFFGLAEGV-AM   90 (339)
Q Consensus        25 ~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~----~~~--~----~~~~~~~~r---~l~G~g~~~-~~   90 (339)
                      .-.+...+.++..|.+.||..|.++...+.+.--++...+..    .+.  +    +-+......   .+.|.-.-. ..
T Consensus        46 ~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~  125 (432)
T PF06963_consen   46 VRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASI  125 (432)
T ss_pred             HHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            334556788899999999999999888776554433333211    111  1    112222111   122211111 11


Q ss_pred             hhhHHHHhhhC------CcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc----
Q 019567           91 PAMSTLTSRWF------PSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT----  160 (339)
Q Consensus        91 ~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~----  160 (339)
                      ....++=.||.      +++.+.+..+...-.=-+.-+++|++.|.+.+..+.+....+.++..++...+-+++..    
T Consensus       126 ~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~  205 (432)
T PF06963_consen  126 ANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYN  205 (432)
T ss_pred             hhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11222224443      23456666777776777789999999999999889888888888777775554443321    


Q ss_pred             CCCC---CCCCCChHHHHHHHhCCccc-----------cccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhh
Q 019567          161 NDPC---NSPFVSKSELRLIQAGKSDS-----------VKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY  226 (339)
Q Consensus       161 ~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (339)
                      +.|+   +++..++++.+..++.++++           .-+.....|+.-++.|.+. ..+...+.++...++...+..|
T Consensus       206 ~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~y  284 (432)
T PF06963_consen  206 SVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAY  284 (432)
T ss_pred             hChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHH
Confidence            1221   11111111000000000000           0011123455566655444 4455555555566778888999


Q ss_pred             hhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccch--hHHHHH
Q 019567          227 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSP--AVAAVL  304 (339)
Q Consensus       227 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  304 (339)
                      +.++ |+++...|.+-+...+.++.+.++.+++.+|+|..+.     ..+.+..-..+...+...+....++  ......
T Consensus       285 l~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-----G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~  358 (432)
T PF06963_consen  285 LKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-----GLWSLWWQWVCLALCVVSFWAPGSPFSSISAYL  358 (432)
T ss_pred             HHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Confidence            9996 9999999999999999999999999999999986511     1233333333444444444433322  222222


Q ss_pred             HHHHHH----Hhhhcccchhhhhh--hcccchhhhhhhhc
Q 019567          305 ITIALS----LSSFSQAGYLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       305 ~~~~~~----~~~~~~~~~~~~~~--~~p~~~g~~~g~q~  338 (339)
                      +..+..    ..-.+.....-..+  +.+++||.++|.|+
T Consensus       359 l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~  398 (432)
T PF06963_consen  359 LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQN  398 (432)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHH
Confidence            222222    22333444444555  77789999999985

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.11  E-value=7.6e-10  Score=100.73  Aligned_cols=153  Identities=18%  Similarity=0.172  Sum_probs=136.2

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhc--chHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG--GKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      .+|...++.+.++.+.+.+.++..+...++.++.|+++|+..  ++.+..++.+..+++...+  .+.++++.++..-.+
T Consensus       320 ~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~--p~~~~~~~l~~~~~~  397 (509)
T KOG2504|consen  320 YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFL--PFATTYVGLIVFSIL  397 (509)
T ss_pred             HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            467888899999999999999999999999999999999988  5567777888888888778  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHhh
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      .|++.|........++.|..+.++-..+.|+.....+++..+||++++.+.+..+ |...|+..++..++....++..
T Consensus       398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            9999999888888899999999999999999999999999999999999988776 9999999888877766555443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.11  E-value=2.6e-09  Score=91.85  Aligned_cols=130  Identities=19%  Similarity=0.202  Sum_probs=106.5

Q ss_pred             HhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcch
Q 019567           11 KFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (339)
Q Consensus        11 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~   90 (339)
                      ++|.++++.+...+.+..+..++.+..+++.||+|+|+.+.++..+..++.++.  ...++.. ...+-++.|++.+..+
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~--~~~~~~~-~~~~~~l~g~~~s~i~  248 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGA--ALTHGYV-AMWFVLALGLFNSIMF  248 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--HHcCCHH-HHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999988888877776655  3334433 2345668899999999


Q ss_pred             hhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHH
Q 019567           91 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFS  145 (339)
Q Consensus        91 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~  145 (339)
                      |...+...+..|+ +.+++.++. ....+|..+.|++.|.+.|..|.+..|++..
T Consensus       249 P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       249 PTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            9999999888864 455666665 5667899999999999999999999887544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.09  E-value=1.7e-09  Score=99.33  Aligned_cols=127  Identities=18%  Similarity=0.276  Sum_probs=109.5

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh--hhcchhHHHHHHHHHHhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--ATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~g   85 (339)
                      +++.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++..+..+.  ...+.+.+....++.|++
T Consensus       282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  361 (485)
T TIGR00711       282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG  361 (485)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            345589999999999999999999999999999999999999999998888888776311  123556677778999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST  134 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~  134 (339)
                      .+...+.......+..|+++|+++.++.+....+|..+|+.+.+.+.++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888889999999999999999999999999999888765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09848 glucuronide transporter; Provisional

Probab=99.09  E-value=2.6e-09  Score=97.08  Aligned_cols=128  Identities=20%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcc
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      +.+|.++...++......++..++.++.+++.||+|+|+.+.++..+..++.+...+...++.+.+++..++.|+|.+..
T Consensus       257 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~  336 (448)
T PRK09848        257 YVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVT  336 (448)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH
Confidence            34565554444444444677788999999999999999999999988888877763322346677777888999999999


Q ss_pred             hhhhHHHHhhhCCcc-------hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           90 MPAMSTLTSRWFPSH-------ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      .+...++..|..|.+       ++|...+..+....+|..+++.+.+.+.+..|+
T Consensus       337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999998887643       358899999999999999999999888766554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.07  E-value=5.3e-09  Score=93.34  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=93.0

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~   87 (339)
                      .++++|.++.+.+...+...++..++.++.+++.||+|||+.+..+..+..++.+..  ...++.+..+..-.+.+.|.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL--ALSPSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999998888887776  334444444444444444444


Q ss_pred             cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHH
Q 019567           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSL  147 (339)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~  147 (339)
                      ...+.  ....+..|.++|+   +..+....++..+++.+++++.+..|+.......+.+
T Consensus       308 ~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~  362 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGIL  362 (392)
T ss_pred             HHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            33333  2334444544443   3444455677778888888888888877655554443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.07  E-value=4.7e-07  Score=81.37  Aligned_cols=256  Identities=9%  Similarity=-0.032  Sum_probs=153.8

Q ss_pred             hhhHhHhCC-----CccchhHHHHHHHHHHHHH-HhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc--------
Q 019567            6 VPLAAKFGW-----SSSFLGIVQSSFLWGYIFS-SVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS--------   71 (339)
Q Consensus         6 ~~i~~~~~~-----s~~~~g~~~s~~~~~~~i~-~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~--------   71 (339)
                      -++++++..     +.+.+.++.+...+...+. .++.+++++|++|++.+-.....+.....++++..-++        
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            345666655     2357889999887777666 89999999999999999888777777666664432111        


Q ss_pred             ---------------------hhHHHHHHHHHHhhhhcchh-hhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHH
Q 019567           72 ---------------------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTP  129 (339)
Q Consensus        72 ---------------------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  129 (339)
                                           .|...+..+...+-...... .-....+|.++.+|-.|..++...+.++|..+++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 22233333444444444444 66888999999999999999999999999999999988


Q ss_pred             Hhhhh-------c-cch----HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHh
Q 019567          130 IMLST-------I-GIS----GPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLL  197 (339)
Q Consensus       130 ~l~~~-------~-~w~----~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (339)
                      ++.+.       . .|.    ..+.+.++.+.+.........++. ..++...+.++    ++++++++.......+.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~----~~~k~k~k~~~~es~k~i~  261 (472)
T TIGR00769       187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV-LTDPRSYNPAL----KEKKVKPKMSTMESLKFLV  261 (472)
T ss_pred             HHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccccchhh----ccccCCCCCCHHHHHHHHH
Confidence            87631       1 242    233333333333333333332222 21111111110    1111111222234677889


Q ss_pred             cchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchh---hHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          198 SKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQA---AWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ++|..+.+++...++..........--..+++.+-.+.+..   +.+....++..++..++.+++.+|+|-+
T Consensus       262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99988887777777766655555444444555443222222   3333444455556666668888888764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.06  E-value=2.2e-09  Score=108.64  Aligned_cols=144  Identities=15%  Similarity=0.105  Sum_probs=117.3

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh------------------hh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------------------AT   69 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~------------------~~   69 (339)
                      +++.+|.++.+.|++.+.+.++..+++++.|+++||.++++.+..+.++.+++.+..++.                  ..
T Consensus       252 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  331 (1140)
T PRK06814        252 AKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK  331 (1140)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence            445689999999999999999999999999999999888777766666666555544221                  11


Q ss_pred             cchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-hccchHHHHHHHHHH
Q 019567           70 HSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-TIGISGPFILFSSLG  148 (339)
Q Consensus        70 ~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-~~~w~~~f~~~~~~~  148 (339)
                      ++.+.+++..++.|++.+...+...+++.+..|+++||+++|..+....+|..+++++.+.+.+ ..+....+++.+...
T Consensus       332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  411 (1140)
T PRK06814        332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALAN  411 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            6777888899999999999999999999999999999999999999999999999999988874 456676666655544


Q ss_pred             HHH
Q 019567          149 LLW  151 (339)
Q Consensus       149 ~~~  151 (339)
                      ++.
T Consensus       412 ~~~  414 (1140)
T PRK06814        412 LIV  414 (1140)
T ss_pred             HHH
Confidence            443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.06  E-value=8e-09  Score=91.81  Aligned_cols=134  Identities=21%  Similarity=0.328  Sum_probs=101.6

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh---hcchhHHHHHHHHHHh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA---THSTASLLAVRAFFGL   84 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~   84 (339)
                      +++++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+..   .++...++...++.|+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999988888777766653211   1234455666788899


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhccchHHHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFIL  143 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~w~~~f~~  143 (339)
                      +.+...+.......|..| ++|+++.++.+..... |...++. .+.+.+..+|...+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL-VSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH-HHhccccChHHHHHHH
Confidence            999888888888888876 6799999998877655 5555554 4455554445444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.06  E-value=2.7e-09  Score=86.84  Aligned_cols=149  Identities=18%  Similarity=0.105  Sum_probs=114.9

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHH-HHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVAL-WSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      ..++.||+|+...+.+.+....-.++.+++.|.++||+|++...+.+..+ +.++..+.    .-+++.-+++..+.|+.
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l----~Ft~lsPy~~m~~lGLs  365 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL----FFTFLSPYTSMTFLGLS  365 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH----HhhhccHHHHHHHHhhh
Confidence            46889999999999999988888899999999999999999776655444 44444443    23556667888899998


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc---chHHHHHHHHHHHHHHHHHHhhc
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~---w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      ....-......++...|+++.|++.|..+...++|..+.|.+++.+.+.-|   |--.|.+......+..+...+..
T Consensus       366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            877666678888889999999999999999999999999999999987543   65555554444333344333343

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=99.05  E-value=8.1e-09  Score=88.35  Aligned_cols=145  Identities=39%  Similarity=0.611  Sum_probs=118.0

Q ss_pred             chhhhHhHhCCCc--cchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc--hhHHHHHH
Q 019567            4 AVVPLAAKFGWSS--SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS--TASLLAVR   79 (339)
Q Consensus         4 ~~~~i~~~~~~s~--~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r   79 (339)
                      ..+.+.++++.+.  .+.++..+.+.++..++.++.|.+.||+|||+.+..+......+.+.+  ....+  .+.+++.|
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  101 (338)
T COG0477          24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL--ALAPNVGLALLLILR  101 (338)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH--HhCccchHHHHHHHH
Confidence            4556667776666  478999999999999999999999999999988888887656666666  33444  89999999


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCc-chhhHHHHHHHH-HHHHHHHHHHhHHHHhhhh--ccchHHHHHHHHHHHH
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPS-HERASAIGICMG-GFHLGNVVGLLLTPIMLST--IGISGPFILFSSLGLL  150 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~l~~~l~~~--~~w~~~f~~~~~~~~~  150 (339)
                      +.+|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+||..|.........
T Consensus       102 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         102 LLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999999999999999999999987 688999998888 5888889998777766654  6799977766655543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.05  E-value=3.7e-09  Score=97.28  Aligned_cols=127  Identities=24%  Similarity=0.241  Sum_probs=110.0

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hhcchhHHHHHHHHHHhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g   85 (339)
                      .+++.+|.|+.+.|.....+.++..++.++.|++.||+|+|+.+..+.++..++.++.... ..++.+......++.|+|
T Consensus       285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g  364 (495)
T PRK14995        285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS  364 (495)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            3456689999999999999999999999999999999999999999988887777655321 124556667788999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS  133 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  133 (339)
                      .+...+.....+.+..|+++++.+.+..+...++|..+|+.+.+.+.+
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999989899999999999999999999999999999999999988865

>PRK10133 L-fucose transporter; Provisional

Probab=99.05  E-value=6.5e-09  Score=93.99  Aligned_cols=140  Identities=11%  Similarity=0.081  Sum_probs=112.0

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhc
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGV   88 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~   88 (339)
                      ++++|.|+.+.++....+.++..++.++.+++.||+|+|+++..+.++.+++..+.  ...++. .-+..-.+.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS--AFAGGH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH--HHcCCh-HHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999998887777666555  334443 234567789999999


Q ss_pred             chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHH
Q 019567           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLS  153 (339)
Q Consensus        89 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~  153 (339)
                      .+|...+...|..| ++.+.+.++... ..+|..++|++.+.+.+..| -|..|++..+..+....
T Consensus       364 i~P~~~s~a~~~~~-~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        364 QYPTIFSLGIKNLG-QDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHHHHHHHHHcccc-hhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99999999999886 456777777764 44788889999999999887 78888875554444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.04  E-value=5.2e-09  Score=95.29  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=111.4

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--------hcchhHHHHHHHH
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--------THSTASLLAVRAF   81 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l   81 (339)
                      +++|.++.+.|.......++..++....+++.+|++.|+++.++.++.+++.....+..        .++.+..+..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            57899999999999999999999999999999999999999999999988875542110        1344556677889


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (339)
                      .+++.+..+.+...++.+..|+++++...++.+...++|..+++.+++.+.+..|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.04  E-value=3.9e-09  Score=90.77  Aligned_cols=151  Identities=23%  Similarity=0.226  Sum_probs=118.4

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh-----cchhHHHHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-----HSTASLLAVRAF   81 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l   81 (339)
                      .++++|+.++.+.|...+.+.+...+..+.+|+++||+|.+|++......++++..+.++...     .+....+..-+.
T Consensus       244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  323 (417)
T COG2223         244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA  323 (417)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence            367789999999999999999999999999999999999999999999888888887744211     334444443444


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHhh
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      .++..|.-......++...+| ++-|.+.|+..+..++|...-|..-+...+..| +...|++.....++..+..+..
T Consensus       324 l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         324 LFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444466777778885 688999999999999999888888888877776 8999999888887777655544

>TIGR00901 2A0125 AmpG-related permease

Probab=99.01  E-value=3.5e-09  Score=93.22  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=94.3

Q ss_pred             hhhhHhHhCCCccchhHHHHHHH-HHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--h-------cchhH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFL-WGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--T-------HSTAS   74 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~-~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--~-------~~~~~   74 (339)
                      .|...+|+|.++++.+.+.+... ++..++.+++|++.||+|||+.+..+.++..++.....+..  .       ++.+.
T Consensus       232 ~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (356)
T TIGR00901       232 TTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLM  311 (356)
T ss_pred             HHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence            45555679999999998888766 57789999999999999999999988888877766542210  1       34577


Q ss_pred             HHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHH
Q 019567           75 LLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFH  118 (339)
Q Consensus        75 ~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  118 (339)
                      +..+.++.+++.+...+...+++.|.+|+|+||+.+|+.+...+
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       312 LFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            78889999999999999999999999999999999999877654

>PRK11043 putative transporter; Provisional

Probab=99.01  E-value=1.8e-08  Score=90.19  Aligned_cols=134  Identities=19%  Similarity=0.237  Sum_probs=102.7

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-h--hhcchhHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-A--ATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~r~l   81 (339)
                      .|.+.+++|.++.+.++....+.++..++.+..+++.||+|+|+..........++.+.... .  ..++.+..++...+
T Consensus       226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (401)
T PRK11043        226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV  305 (401)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            46667789999999999888888899999999999999999998776665555444433211 1  13455556666778


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISG  139 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~  139 (339)
                      .|++.+...+.......|..| ++|+++.++.+.....+...++.+.+.+.+...-..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            889888888888888878775 689999999999888888888888888876433333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.98  E-value=9.8e-09  Score=93.90  Aligned_cols=123  Identities=11%  Similarity=0.049  Sum_probs=97.6

Q ss_pred             CccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh---hhhcchhHHHHHHHHHHhhhhcchh
Q 019567           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW---AATHSTASLLAVRAFFGLAEGVAMP   91 (339)
Q Consensus        15 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~g~~~~~~   91 (339)
                      +++..+++.+...++..++.++.++++||+|+|+.+..+..+..++.+...+   ...++.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4555677777777888999999999999999999999888776666555421   1135567777888899999999999


Q ss_pred             hhHHHHhhhCC-------cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           92 AMSTLTSRWFP-------SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        92 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      ...++++|..|       +++.|..++.......+|..+++.+.+++.+..|+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999865       23346688999999999999999999998876554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.96  E-value=1.4e-08  Score=92.83  Aligned_cols=149  Identities=13%  Similarity=0.034  Sum_probs=101.2

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHH--------HHHHHHHHHHHHHHhhhh-hcchhHHHHH
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVL--------AWGVALWSLSTLLTPWAA-THSTASLLAV   78 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (339)
                      +++++|.+..+.++..+...++..++.++.|+++||+++|+..        ..+......+........ ..+....++.
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII  367 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4567899999999999999999999999999999998755321        111111111111110011 2344444445


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc---cchHHHHHHHHHHHHHHHHH
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI---GISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~---~w~~~f~~~~~~~~~~~~~~  155 (339)
                      -.+.+.+.+...+.......|..| +.+|...++.+....+|..++|.+.+.+.+..   +|+..|.+.++..++..+..
T Consensus       368 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       368 LTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            555555555555555555566665 58999999999999999999999999887643   48889999887777765554


Q ss_pred             Hh
Q 019567          156 TS  157 (339)
Q Consensus       156 ~~  157 (339)
                      ..
T Consensus       447 ~~  448 (465)
T TIGR00894       447 LI  448 (465)
T ss_pred             ee
Confidence            43

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.92  E-value=4.8e-08  Score=86.22  Aligned_cols=144  Identities=13%  Similarity=0.030  Sum_probs=97.7

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcch---HHHHH-HHHHHHHHHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGK---KVLAW-GVALWSLSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      +|.+-++.|.|.. .+...+...+...++   .++++||.+||   +.... ..++.++.....  ...++....++.-.
T Consensus       215 lp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~  288 (368)
T TIGR00903       215 LEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLAL--AFELNRLALFAFIG  288 (368)
T ss_pred             HHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH--HHccccHHHHHHHH
Confidence            4666677777754 555555555544444   46777777543   33332 333334433333  22444444455556


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.|++.....+...++.+|.+|++.|+++.|+.+....+|...+|++.+.+..  +-+..|.+.++..++..+...
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777788999999999999999999999999999999998877763  667778888777777655543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.92  E-value=7.6e-08  Score=85.40  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=87.1

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-h-hhcchhHHHHHHHHHHh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-A-ATHSTASLLAVRAFFGL   84 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~r~l~G~   84 (339)
                      ...+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+.... . ...+.+...++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            345668999999999999999999999999999999999999999887765443332211 1 12345555555555555


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHH-HHHHHHHHHhHHH
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGG-FHLGNVVGLLLTP  129 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~l~~  129 (339)
                      +.+...+.....+.|..| ++++++.+..+.. ..+|..+++.++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556666666777788776 7899998886554 4566666666543

>PRK09669 putative symporter YagG; Provisional

Probab=98.92  E-value=2e-08  Score=91.14  Aligned_cols=120  Identities=11%  Similarity=0.215  Sum_probs=94.2

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLT   97 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i   97 (339)
                      ..+.+.....+...++.+++++++||+|+|+.+..+.++..+......+...++.+.+++..++.|++.+...+...+++
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~  344 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF  344 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677778889999999999999999998877666544433112245777788888999999999999999999


Q ss_pred             hhhCCc-------chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           98 SRWFPS-------HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        98 ~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      +|..|.       ++.|...+..+....+|..+++.+++.+.+..|+
T Consensus       345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            988752       2346678899999999999999999998887665

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.91  E-value=8e-08  Score=86.15  Aligned_cols=137  Identities=16%  Similarity=0.097  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh----cchhHHHHHHHHHHhhhhcchhhhHHHHh
Q 019567           23 QSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT----HSTASLLAVRAFFGLAEGVAMPAMSTLTS   98 (339)
Q Consensus        23 ~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~g~~~~~~~~~~~i~   98 (339)
                      .....+...+..+++|+++||+|+|+++.++.+...+......+...    .+++.+.+.-+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            33446677888999999999999999999998877776643211211    34666666655555555655667777777


Q ss_pred             hhCCc---------------------chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHH
Q 019567           99 RWFPS---------------------HERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        99 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.+|+                     ++-|.+.|+.++...+|..+-|.+-+...+.. ++...|+...+..+++.++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            77763                     25678889999999999999997766666654 488888888877777766665


Q ss_pred             hhc
Q 019567          157 SKV  159 (339)
Q Consensus       157 ~~~  159 (339)
                      ...
T Consensus       452 ~~y  454 (462)
T PRK15034        452 LVY  454 (462)
T ss_pred             HHh
Confidence            554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.91  E-value=7.9e-08  Score=81.28  Aligned_cols=152  Identities=17%  Similarity=0.130  Sum_probs=123.4

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      +|.+..|-|+|+.+.|++.+...+.....++....+++|. ++|+..+...+++.++.+.+.+  .+.-..++. -++.|
T Consensus       231 LP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P~~~~~lw-~~llG  307 (395)
T COG2807         231 LPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--APGQLPILW-ALLLG  307 (395)
T ss_pred             HHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hhhhHHHHH-HHHHh
Confidence            6889999999999999999999999999999999999965 6778888888888888887733  444333333 49999


Q ss_pred             hhhhcchhhhHHHHhhhCCc-chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cchHHHHHHHHHHHHHHHHHHhhc
Q 019567           84 LAEGVAMPAMSTLTSRWFPS-HERASAIGICMGGFHLGNVVGLLLTPIMLSTI-GISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~-~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +|.|..++.+...+.+..++ ++-++..++.+....+=...||.+.|++.|.. +|+..+...+...+...+..+..-
T Consensus       308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999998854 44566667777777777889999999998865 599999988887777666655543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.91  E-value=1.2e-08  Score=89.42  Aligned_cols=121  Identities=24%  Similarity=0.343  Sum_probs=104.0

Q ss_pred             hhhh-HhHhCCC-ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hhcchhHHHHHHHH
Q 019567            5 VVPL-AAKFGWS-SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-ATHSTASLLAVRAF   81 (339)
Q Consensus         5 ~~~i-~~~~~~s-~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l   81 (339)
                      .|.. .+++|.+ ..+.+...+...+...++.++.|++.||+++|+..........+..+...+. ..++....+..-++
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (352)
T PF07690_consen  229 LPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFL  308 (352)
T ss_dssp             HHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHH
T ss_pred             cchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4553 8889999 7899999999999999999999999999999888888777777766665321 22355777778899


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGL  125 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  125 (339)
                      .|++.+...+....++.|..|+++|+++.|+.+...++|..++|
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  309 IGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.91  E-value=6.7e-09  Score=91.74  Aligned_cols=147  Identities=21%  Similarity=0.249  Sum_probs=128.9

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcc
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      ||.+..+...|.....-..+-.+.=++.+++.+|+|+-+++..++.+..+=.+..  ...+|.|+.+...+++|+..+..
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~--S~L~n~W~vLPieilqgit~ali  476 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYY--SYLQNPWMVLPIEILQGITHALI  476 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHH--HHhcCchheeeHHHHHHHHHHHH
Confidence            5667677777777777777888888899999999999999999999998887777  55899999999999999999999


Q ss_pred             hhhhHHHHhhhCCcchhhHHHHHHH-HHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           90 MPAMSTLTSRWFPSHERASAIGICM-GGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.+..+++++..||+.|..+.++.+ ...++|--+|+++++.+.+.++=|..|...++.+++.++.....
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998875 45678999999999999999999999999998888876665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.91  E-value=4.9e-08  Score=89.19  Aligned_cols=142  Identities=17%  Similarity=0.126  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhhcc-----hHHH--HHHHHHHHHHHHHHhhh-------hhcchhHHHHHHHHHHh
Q 019567           19 LGIVQSSFLWGYIFSSVIGGALVDKYGG-----KKVL--AWGVALWSLSTLLTPWA-------ATHSTASLLAVRAFFGL   84 (339)
Q Consensus        19 ~g~~~s~~~~~~~i~~~~~g~l~dr~G~-----r~~l--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~l~G~   84 (339)
                      .+++.+...+...+.+++..++-.|.+|     +...  .+|.++.+++.+..++.       ...|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            6789999999999998886654444433     3433  67888888877766321       14689999999999999


Q ss_pred             hhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           85 AEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      |+....|...+++.|..|++.||+++|++.....+|..+++.+.....+..+|...|...++..++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888777778999998888887777666655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.88  E-value=8.7e-08  Score=77.54  Aligned_cols=300  Identities=13%  Similarity=0.089  Sum_probs=160.6

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+-++++....|+|.+.-.......+...+.|.++||-|||+.-+.-++...++++-   -.++.+-.++++|.+-|+..
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT---KhSpqYkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT---KHSPQYKVLMVGRVLGGIAT  138 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh---hcCCceEEEeehhhhhhHHH
Confidence            445677888888888888777778888999999999999999666555555554443   24789999999999999999


Q ss_pred             hcchhhhHHH-HhhhCCcchhhHHHHHH--------HHHHHHHHHHHHhHHHHhhhhcc--chHHHHHHHHHHHHHHHHH
Q 019567           87 GVAMPAMSTL-TSRWFPSHERASAIGIC--------MGGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        87 ~~~~~~~~~~-i~~~~~~~~r~~~~~~~--------~~~~~~g~~~~~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~~  155 (339)
                      +..+..-.++ +.|.-  ++|+.-.-+.        ..++.+=.+++.+.+..+.++++  --.+|-..+....+...+.
T Consensus       139 sLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi  216 (454)
T KOG4332|consen  139 SLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI  216 (454)
T ss_pred             HHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            9988887766 45554  2333222221        13334444555555666666543  4455655444433333322


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHH-HhhhhhhhhhhCCc
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLL-SWMPIYFNTVFNVN  234 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~g~~  234 (339)
                      ..--.|+-.+..    ++++..         ..-....+.+..++++.++.....+.-...+.+. .|.|..--+..+  
T Consensus       217 l~~W~ENygdps----~~kdll---------tqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~--  281 (454)
T KOG4332|consen  217 LSSWSENYGDPS----ENKDLL---------TQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE--  281 (454)
T ss_pred             HhhhhhccCChh----hhHHHH---------HHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc--
Confidence            211122211110    000000         0011123455666666666555555555544443 344432211111  


Q ss_pred             cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhc----cc---chhHHHHHHHH
Q 019567          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY----AK---SPAVAAVLITI  307 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~  307 (339)
                       .--|.+++.+..+.++|+-+..++..|-..+   ..    ..+.+.++..+..+.+...    .+   +.....+.++.
T Consensus       282 -iPhGfiFatFMlASmLGSSla~Rl~s~s~~~---ve----~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~  353 (454)
T KOG4332|consen  282 -IPHGFIFATFMLASMLGSSLASRLLSRSSPK---VE----SYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCL  353 (454)
T ss_pred             -CCchhHHHHHHHHHHHhhHHHHHHHhcCCcc---cc----hHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHH
Confidence             2236666666666666665555554432221   11    1222223332222222211    12   23344555666


Q ss_pred             HHHHhhhcccchhhhhh-hcc-cchhhhh
Q 019567          308 ALSLSSFSQAGYLLNIQ-IAQ-DFSTALQ  334 (339)
Q Consensus       308 ~~~~~~~~~~~~~~~~~-~~p-~~~g~~~  334 (339)
                      .-.+.+..++...-.-. ..| +.+.+++
T Consensus       354 ~E~cvGlfwPSimkmRsqyIPEearstim  382 (454)
T KOG4332|consen  354 FEACVGLFWPSIMKMRSQYIPEEARSTIM  382 (454)
T ss_pred             HHHHHhhcchHHHHHHHhhCCHHHHhhhh
Confidence            66677777777666555 444 4455443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.84  E-value=1.4e-08  Score=85.78  Aligned_cols=128  Identities=17%  Similarity=0.235  Sum_probs=95.2

Q ss_pred             HHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchh
Q 019567           27 LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHER  106 (339)
Q Consensus        27 ~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r  106 (339)
                      .+.-.-|.++.+.+.||+|||+++....+++++..+..  ..+.+-....+.-+..-+.....+.+.+.|..|.+|.+.|
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll--~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLL--TTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            34556788999999999999999999999999988887  3343333223333333333445566788999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567          107 ASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus       107 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +...|..+...-+|.++.|+++  +.....-..+..+.+..+++..+...++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence            9999999999999999999998  4333444556666677776666655544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.6e-06  Score=77.13  Aligned_cols=105  Identities=14%  Similarity=0.088  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCC
Q 019567           23 QSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFP  102 (339)
Q Consensus        23 ~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~  102 (339)
                      +++......++.++.+.+.|+.|.|+.+.++..+...-....  . -+|-+.+++...+.|+|.+..+..-..+++|..+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf--l-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF--L-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH--H-hcchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            677778889999999999999999999999999998877765  3 4788889999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhHHHH
Q 019567          103 SHERASAIGICMGGFHLGNVVGLLLTPI  130 (339)
Q Consensus       103 ~~~r~~~~~~~~~~~~~g~~~~~~l~~~  130 (339)
                      ++.+.+..++.-+....+.++|...-..
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            9999999999888888877777655433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.80  E-value=1.7e-07  Score=84.75  Aligned_cols=131  Identities=18%  Similarity=0.196  Sum_probs=109.8

Q ss_pred             hhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHh
Q 019567            6 VPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGL   84 (339)
Q Consensus         6 ~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~   84 (339)
                      +...++ ++ ++...+.+.....++..++.+++++++||+|+|+++..+..+..++.++..+...+|.+.+++.-++.|+
T Consensus       249 ~y~~~~vl~-~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi  327 (428)
T PF13347_consen  249 PYYFTYVLG-NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGI  327 (428)
T ss_pred             HHHHHHHhc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHh
Confidence            344444 44 3467788888999999999999999999999999999999999999988743222599999999999999


Q ss_pred             hhhcchhhhHHHHhhhCCc-------chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           85 AEGVAMPAMSTLTSRWFPS-------HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        85 g~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      +.+..++...++++|..+.       ++.|...+..+....+|..+++.+.+.+.+..|+
T Consensus       328 ~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  328 GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999998863       3358889999999999999999999888765543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.79  E-value=1.2e-07  Score=87.23  Aligned_cols=139  Identities=12%  Similarity=0.014  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHHHHHHHhhh----HHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc---------hhHHHHHHHHHHhh
Q 019567           19 LGIVQSSFLWGYIFSSVIG----GALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS---------TASLLAVRAFFGLA   85 (339)
Q Consensus        19 ~g~~~s~~~~~~~i~~~~~----g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~g   85 (339)
                      .++..+...+...+..++.    +++.||++.++.+.+|.++.+++.+..++  .++         .++++..+++.|+|
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~--~~~~~~~~~~vs~~~~~~~~~l~~~g  395 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPL--GAKFANDAGIVSVNWLIASYGLQSIG  395 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHH--HHHhcCCCCccCHHHHHHHHHHHHHH
Confidence            5677777777777776666    66666666778889999999999888743  333         45788999999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh----------hccchHHHHHHHHHHHHHHHHH
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS----------TIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~----------~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      +....|...+++.+..|++.||+.+|.+.....+|..++..+......          ..+..+.|...++.+++..++.
T Consensus       396 e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        396 ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888777777777666643211          1135677887777766555444


Q ss_pred             Hhhc
Q 019567          156 TSKV  159 (339)
Q Consensus       156 ~~~~  159 (339)
                      +...
T Consensus       476 ~~~~  479 (500)
T PRK09584        476 LLTA  479 (500)
T ss_pred             HHHH
Confidence            4433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.75  E-value=6.3e-07  Score=80.08  Aligned_cols=127  Identities=19%  Similarity=0.201  Sum_probs=95.7

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHH-HHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWS-LSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      +++.+|.++.+.++.......+..+++++.+++.||++++........... +...........+.+.+....++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            344589999999999999999999999999999999984433322222222 1111111111245667788889999999


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI  135 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  135 (339)
                      +...+...++..|.+| ++++...++.+....+|..+++.+++.+.+..
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            9999999999999886 67899999999999999999999998876653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.73  E-value=4.2e-08  Score=65.34  Aligned_cols=73  Identities=26%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             CCcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHH
Q 019567            1 MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASL   75 (339)
Q Consensus         1 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~   75 (339)
                      +.|++|.+++|.++|.++.|++.+...+||.+|++...++.++..+++.+..+.+...+..+.+  +..++.+..
T Consensus        11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m--a~~~~~~~w   83 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM--ALTHSFWLW   83 (85)
T ss_pred             HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH--HHHhchHHH
Confidence            4689999999999999999999999999999999999999999888999999999999999999  547776544

Note that many members are hypothetical proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.72  E-value=5.7e-07  Score=79.93  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=103.4

Q ss_pred             hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchh
Q 019567           12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMP   91 (339)
Q Consensus        12 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~   91 (339)
                      +|.++.+..+.......+..++.++..++++|+|+|+++..+.++..++.++.-+...++.+..++..++.++|.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            34455566677778888888889999999999999999999999999999988443345788899999999999999999


Q ss_pred             hhHHHHhhhCCc-------chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 019567           92 AMSTLTSRWFPS-------HERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (339)
Q Consensus        92 ~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (339)
                      .-.++++|..+-       ++-|...+......-+|..++..+.+++.+..|
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999998886642       334778888889999999999988888876554

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.72  E-value=4.5e-07  Score=76.05  Aligned_cols=315  Identities=12%  Similarity=0.032  Sum_probs=194.8

Q ss_pred             HhCCCccchh-HHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcc
Q 019567           11 KFGWSSSFLG-IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        11 ~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      |.|+++.++. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......+.  .+.++.+.+-+.-+.-|...+ .
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~l--v~g~sV~~mQvlE~FyG~~tA-a  111 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIML--VFGPSVKAMQVLEFFYGPATA-A  111 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHH--HhcCCchheeeehhhcChHHH-H
Confidence            3455554432 22233344556666677789999988998887766666666666  558899988888999998866 4


Q ss_pred             hhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc--hHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019567           90 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWTSKVTNDPCNSP  167 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (339)
                      ..+-++++=+..+++++.++.+...+..-.|-..|..++..+...-.+  ...=.+ ...+.........++|..++..-
T Consensus       112 EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~  190 (433)
T KOG3810|consen  112 EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLY  190 (433)
T ss_pred             HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhh
Confidence            467788888888999999999999999999999999998888764322  222122 22222223333445555543211


Q ss_pred             CCChHHHHHHHhCCc---cccc--------cCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC-Ccc
Q 019567          168 FVSKSELRLIQAGKS---DSVK--------KRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN-VNL  235 (339)
Q Consensus       168 ~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~  235 (339)
                      ...++++....+.++   +.+.        .....++.+..+||+.....+.+.+...+++...++.-..-++... -..
T Consensus       191 f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~  270 (433)
T KOG3810|consen  191 FHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPAN  270 (433)
T ss_pred             hhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchh
Confidence            111111100000000   0000        0111234556678888888888888888888888877666665421 111


Q ss_pred             chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhc
Q 019567          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFS  315 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (339)
                      ...|..=++..+.++++.+..|++.-++.|.       +..++..+....+.++..+....+.|...+..++......+.
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~  343 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLT  343 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhh
Confidence            2234444556666788888888887665554       567777777777777777777777777766666655555554


Q ss_pred             ccchhhhhh--hcccchhhhhhh
Q 019567          316 QAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       316 ~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      .+.......  +..+..|.+.|+
T Consensus       344 itiA~~~iA~nL~~e~~gLvFGi  366 (433)
T KOG3810|consen  344 ITIATFQIARNLSSELFGLVFGI  366 (433)
T ss_pred             hhHHHHHHHHhhhhhhheeeeeh
Confidence            444433333  666777777665

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.69  E-value=2.8e-07  Score=80.24  Aligned_cols=126  Identities=15%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh----hhcchHHHH-HHHHHHHHHHHHHhhhhhcch------
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD----KYGGKKVLA-WGVALWSLSTLLTPWAATHST------   72 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~G~r~~l~-~~~~~~~~~~~~~~~~~~~~~------   72 (339)
                      ..|+..+++|++.+..+.+--.-.+...+.+|+.|..+|    ||||||.++ .+.+..+++.++.++  +.++      
T Consensus        54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~--aaDig~~lgd  131 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGY--AADIGLLLGD  131 (498)
T ss_pred             cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhh--HhhhhHHhcC
Confidence            357778889999988888888778888899999999999    589877655 455666666666654  3322      


Q ss_pred             -----------hHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhH-HHHHHHHHHHHHHHHHHhHHHHh
Q 019567           73 -----------ASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERAS-AIGICMGGFHLGNVVGLLLTPIM  131 (339)
Q Consensus        73 -----------~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~l  131 (339)
                                 ..++++--+.-++.-....++-+++.|...++++.+ +++.+..+..+|..+|..++++.
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                       344555556666777888899999999997666666 99999999999999999888743

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.67  E-value=3.9e-07  Score=83.44  Aligned_cols=141  Identities=16%  Similarity=0.066  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhhcchHH-------HHHHHHHHHHHHHHHh-----hhh---hcchhHHHHHHHHHH
Q 019567           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGKKV-------LAWGVALWSLSTLLTP-----WAA---THSTASLLAVRAFFG   83 (339)
Q Consensus        19 ~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~-------l~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~r~l~G   83 (339)
                      .+++.+...+...+..++.+++.||+++|+.       +.+|.++.+++.+...     +..   ..+.++++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4667777778888999999999999999973       7777777776654321     111   135677888999999


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh----------hccchHHHHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS----------TIGISGPFILFSSLGLLWLS  153 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~----------~~~w~~~f~~~~~~~~~~~~  153 (339)
                      +|+++..+...+.+.+..|++.++.++|++.....+|..++..++.....          .-...+.|...++.+++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888865521          11245667777777666655


Q ss_pred             HHHhhc
Q 019567          154 TWTSKV  159 (339)
Q Consensus       154 ~~~~~~  159 (339)
                      +.+...
T Consensus       471 ~~~~~~  476 (489)
T PRK10207        471 VMALMV  476 (489)
T ss_pred             HHHHHH
Confidence            555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.67  E-value=1.1e-05  Score=70.58  Aligned_cols=136  Identities=18%  Similarity=0.197  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhh
Q 019567           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (339)
Q Consensus        20 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (339)
                      +.+.-+-.+...+..+...+..+|+..+.=..+..+++.++.++.  ++++|.+.-+++-.+.+++.|........+. .
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~v--a~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~  138 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLV--AFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-H  138 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhhe--eeccchhHHHHHHHHHhhhhhhhHHHHHHHH-H
Confidence            334445555666777778889999876555566667788888888  6689999999999999999888777777764 4


Q ss_pred             hCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc--hHHHHHHHHHHHHHHHHHHhhccCCC
Q 019567          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI--SGPFILFSSLGLLWLSTWTSKVTNDP  163 (339)
Q Consensus       100 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w--~~~f~~~~~~~~~~~~~~~~~~~~~~  163 (339)
                      .+++    ...+.++.+.+.+.++|+..-..+.+ .++  |..+++...+.++..+..++.+|+++
T Consensus       139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            5653    35778888888888888877666665 555  77888877777666665565655443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.66  E-value=2e-07  Score=82.30  Aligned_cols=126  Identities=13%  Similarity=-0.001  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHH
Q 019567          201 PSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (339)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  280 (339)
                      +++...+..+......+....+.|.++++++|.|+.+.+++.+...++..++.++.|+++||+|+|         +.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---------~~~~~   72 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR---------YTTTL   72 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch---------HHHHH
Confidence            456667777777778888889999878888999999999999999999999999999999999976         45566


Q ss_pred             HhhhhhhHhhhhhccc-chhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhh
Q 019567          281 GFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       281 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      +.++..++.++..+.+ +.+...+.-.+.....+. .........  ..+++++...+.
T Consensus        73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~  130 (366)
T TIGR00886        73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGL  130 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHH
Confidence            6777777766666665 554433332222222222 222223333  445678877664

>PRK11462 putative transporter; Provisional

Probab=98.65  E-value=9.6e-07  Score=80.46  Aligned_cols=122  Identities=15%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHH
Q 019567           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (339)
Q Consensus        16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (339)
                      +...+.+.+.+.++..++.+++++++||+|+|+.+..+..+..+..++.-+...++...+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888899999999999999999987765554444333331111222334455556678877776666677


Q ss_pred             HHhhhCC-------cchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q 019567           96 LTSRWFP-------SHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGI  137 (339)
Q Consensus        96 ~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w  137 (339)
                      +++|..+       +++.|..++.......+|..+++.+++.+.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777665       23345566777888999999999999888765454

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.63  E-value=1.7e-06  Score=65.64  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhh
Q 019567           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (339)
Q Consensus        20 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (339)
                      -.-.++......++.++.+.+.+++|.|+.++++.++..+-....   .-++.+.++.+-.+.|++.+..++.-..++.+
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~---~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF---FYPNSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            344556666778888999999999999999999999998655543   35788999999999999999999999999999


Q ss_pred             hCCcchhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 019567          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIM  131 (339)
Q Consensus       100 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  131 (339)
                      ..++++|++..++.-.....+.++|......+
T Consensus       117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888887766544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.60  E-value=1.6e-06  Score=77.73  Aligned_cols=128  Identities=16%  Similarity=0.165  Sum_probs=96.8

Q ss_pred             CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhh
Q 019567           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPA   92 (339)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~   92 (339)
                      +.+....+...+.+..+..++.++.+++.||+++|+++.+...+..+..++.  ...++... ...-.+.|++.+..+|.
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~--~~~~~~~~-~~~l~~~glf~s~~fp~  341 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGS--IFAGGHVG-LYCLTLCSAFMSLMFPT  341 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH--HHcCChHH-HHHHHHHHHHHHHHHHH
Confidence            3334444556667778889999999999999999999999888888888777  43555433 66778888989999999


Q ss_pred             hHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc------cchHHHHHHH
Q 019567           93 MSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI------GISGPFILFS  145 (339)
Q Consensus        93 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~------~w~~~f~~~~  145 (339)
                      ..++..+..+++.+....++...  .+|..+.|++.|.+.|..      +.+..|++..
T Consensus       342 i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       342 IYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence            99999999975543333333332  399999999999999954      4777777643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=2.3e-07  Score=79.33  Aligned_cols=149  Identities=17%  Similarity=0.160  Sum_probs=116.1

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHH--HHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAW--GVALWSLSTLLTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      +.|.+..+..+.|...--..+.+.++..+.|.++||++..+.+..  +++..++.+...  -+++++..+.+-++..|++
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i--P~~~~~~~L~vp~~~l~~~  374 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI--PFATSIAQLWVPNFGLGFG  374 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh--HhhhhHHHHhhhhHHHHHH
Confidence            556677666688888888889999999999999999995444443  333334333334  4589999999999999988


Q ss_pred             hhcchhhhHHHHhhhCCcc------hhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           86 EGVAMPAMSTLTSRWFPSH------ERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      .+...........+..+.+      .-|...++...++.+|..+||.+++.+.+..|++|.-.+.++..++...+....
T Consensus       375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776666666665433      346888999999999999999999999999999999999999888866655544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.58  E-value=2.9e-06  Score=76.33  Aligned_cols=157  Identities=11%  Similarity=0.035  Sum_probs=102.0

Q ss_pred             hhhh-HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh---hhcchhHHHHHHH
Q 019567            5 VVPL-AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA---ATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i-~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~   80 (339)
                      .|.+ ++.+|.++.+.++.......+..++..+.+++.+|..+++.......+..++..+....   ..++++..++..+
T Consensus       241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~  320 (413)
T PRK15403        241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTS  320 (413)
T ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            4554 45569999999999888888888888888887765555444433333333333332111   1234444577888


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhcc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVT  160 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~  160 (339)
                      +.++|.+...|......-+ -....+|++.++.+.....+...++..++++.++ +-+.+|...+++..+.....+....
T Consensus       321 l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  398 (413)
T PRK15403        321 LYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVFTLAGLL  398 (413)
T ss_pred             HHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8999988887777753321 1223579999999998888889999999888765 5577777666665554444443333


Q ss_pred             CCC
Q 019567          161 NDP  163 (339)
Q Consensus       161 ~~~  163 (339)
                      +++
T Consensus       399 ~~~  401 (413)
T PRK15403        399 NRV  401 (413)
T ss_pred             hhh
Confidence            333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.46  E-value=1.7e-05  Score=68.82  Aligned_cols=147  Identities=18%  Similarity=0.144  Sum_probs=121.3

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh-hhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHHHHHhhh
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD-KYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-r~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~g~   86 (339)
                      .+-||.+..|...+++.+..|..++....|++.. |.++|+.-..++....++..+..+ +...+.+.+...-++.|++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~  315 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN  315 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence            3558999999999999999999999999999888 678888888888877776665422 23567889999999999999


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh----------ccchHHHHHHHHHHHHHHHHH
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST----------IGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~----------~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      |.......+...|..++++.|..+|.+.....++..++..+++.+.|.          .++-.+|.+.++..++...+.
T Consensus       316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887652          245667777776665554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.43  E-value=1e-05  Score=74.95  Aligned_cols=158  Identities=19%  Similarity=0.195  Sum_probs=103.9

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc--c---------hhH
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH--S---------TAS   74 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--~---------~~~   74 (339)
                      +.+-++.|.+... .+......+...++..+...+.||+|||+.++.+...+.++.++.+.....  +         ...
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            4455555555443 455556666777888888999999999999999999999999887543211  1         111


Q ss_pred             HH-HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHH
Q 019567           75 LL-AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLS  153 (339)
Q Consensus        75 ~~-~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~  153 (339)
                      +. .+-++..+. ....+....+.+|.+|.+.|+++.++......+...+-......+.+..++...|...+..+.+...
T Consensus       398 ~~~~~~~v~~f~-~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  398 IVFLCLFIFSFA-IGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHh-cccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            11 222222222 2234555678899999999999999987777766555544444444444456677777777766666


Q ss_pred             -HHHhhccCCCCC
Q 019567          154 -TWTSKVTNDPCN  165 (339)
Q Consensus       154 -~~~~~~~~~~~~  165 (339)
                       ..+.+.||++..
T Consensus       477 ~fv~~~~pETkg~  489 (513)
T KOG0254|consen  477 IFVFFFVPETKGL  489 (513)
T ss_pred             HHheEEcccCCCC
Confidence             567777887654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.40  E-value=3.2e-06  Score=76.76  Aligned_cols=87  Identities=10%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             chhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHH-HHhccchHHHHHHH
Q 019567          199 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLTLVRKIM  277 (339)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~  277 (339)
                      .+.++......+...+.+++...++|.|+++.+|+++.+++...........++.+++|+++||+ |||         +.
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr---------r~   78 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR---------MA   78 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH---------HH
Confidence            34567777777888889999999999999998999999999999999888899999999999999 875         44


Q ss_pred             HHHHhhhhhhHhhhhhc
Q 019567          278 QSIGFIGPGVSLLCLNY  294 (339)
Q Consensus       278 ~~~~~~~~~~~~~~~~~  294 (339)
                      +..+.+...++.+++..
T Consensus        79 iliG~il~~lg~lll~~   95 (493)
T PRK15462         79 VMLGALLMAIGHVVLGA   95 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55666666666555543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.37  E-value=0.00074  Score=61.40  Aligned_cols=246  Identities=10%  Similarity=-0.002  Sum_probs=138.1

Q ss_pred             ccchhHHHHHHHH-HHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc-----------------------
Q 019567           16 SSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS-----------------------   71 (339)
Q Consensus        16 ~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~-----------------------   71 (339)
                      ++.+..+-....+ ...+......+++||++|++++-+....+.....+.++..-|+                       
T Consensus        57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~  136 (491)
T PF03219_consen   57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG  136 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence            4445555553333 4456678899999999999988877766666555554321111                       


Q ss_pred             ------hhHHHHHHHHHHhhhhcchh-hhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh---------hc
Q 019567           72 ------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS---------TI  135 (339)
Q Consensus        72 ------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~---------~~  135 (339)
                            .|...+..+..-+-.....+ .-.....|.++.+|-.|..++...+.++|.++++.+...+.+         .-
T Consensus       137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~  216 (491)
T PF03219_consen  137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVD  216 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence                  11222222222222222222 347778999999999999999999999999999999888877         12


Q ss_pred             cchHHHHHH----HHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHh
Q 019567          136 GISGPFILF----SSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANIT  211 (339)
Q Consensus       136 ~w~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (339)
                      .|.......    .+.+.+.........++..+++...     +...++++++++..-..+.+.++|+|....+++...+
T Consensus       217 ~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~-----~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~  291 (491)
T PF03219_consen  217 AWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFY-----PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIA  291 (491)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc-----hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHH
Confidence            355433221    2222222222222222221111110     0000111111122223456778889988888877777


Q ss_pred             hHHHHHHHHHhhhhhhhhhhCCccchh---hHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          212 NNWGYFVLLSWMPIYFNTVFNVNLKQA---AWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       212 ~~~~~~~~~~~~~~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ++..........-..+++.+.-+.+.+   |......++..++..++++.+.+|+|-+
T Consensus       292 Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  292 YGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            777666666555555555443222222   3344455555666667778888887754

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.31  E-value=3.9e-05  Score=69.56  Aligned_cols=142  Identities=12%  Similarity=-0.004  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHHHHHHHHHHHHHHHhhhhhcc---------------------hhHHHHH
Q 019567           21 IVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLTPWAATHS---------------------TASLLAV   78 (339)
Q Consensus        21 ~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~   78 (339)
                      |....+.+...+.+++..++.+|+|+ |++..++.++.+++.+...+  .++                     .+..++.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  386 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVL--VTYVAKNSRYYDGDGESLPPPTGIKASALIV  386 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH--HHhhhhccccccccccccCcchhhHHHHHHH
Confidence            44445555556777888899999995 67778888888877776632  222                     3667788


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCc--chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc--chHHHHHHHHHHHHHHHH
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIG--ISGPFILFSSLGLLWLST  154 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~--w~~~f~~~~~~~~~~~~~  154 (339)
                      -.+.|+..+.....-++++++..++  ++.|..+|+.+.+..+.+++..+..+.+.+.+|  -.+.+.+.++..++..+.
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHH
Confidence            8899999999999999999999985  456999999999999999999988888666554  566788888888888888


Q ss_pred             HHhhccCCCC
Q 019567          155 WTSKVTNDPC  164 (339)
Q Consensus       155 ~~~~~~~~~~  164 (339)
                      .++.+|+.++
T Consensus       467 ~~~~~~~~~~  476 (477)
T TIGR01301       467 ALILLPRPRV  476 (477)
T ss_pred             HHHhCCCCCC
Confidence            8888887664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.30  E-value=1.4e-05  Score=68.95  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=115.4

Q ss_pred             hhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHH
Q 019567            5 VVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         5 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      ++...+| .|.++.+.....+.+..+..+|.++..++..|+...|.+....++..+-++..  +.+++... +.+-++.|
T Consensus       259 l~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~--~l~~g~v~-~~~l~~ig  335 (422)
T COG0738         259 LVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV--ALIGGVVA-LYALFLIG  335 (422)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH--HHhcChHH-HHHHHHHH
Confidence            4455555 88899999999999999999999999999999999999998888877777777  55777444 44567788


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~  152 (339)
                      +..+..+|...++-.+..| + .....|..-....+|.++-|.+-|++.|+.|-...+.....+|.+..
T Consensus       336 ~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         336 LFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999987 3 33344444556678999999999999999999888886666666654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.25  E-value=1e-05  Score=73.13  Aligned_cols=149  Identities=13%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcc---------hHHHHHHHHHHHHHHHHHhhhhhcc-hhHHHH
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG---------KKVLAWGVALWSLSTLLTPWAATHS-TASLLA   77 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~---------r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~   77 (339)
                      +.+-+|.|..+.|++.++..+...+..+++|.++||.-+         |..=.++....++..+..  .+.++ .....+
T Consensus       285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l--~~~~~~~~~~a~  362 (466)
T KOG2532|consen  285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVL--AFTSDEHRLLAV  362 (466)
T ss_pred             HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHee--eecCCCcchHHH
Confidence            555689999999999999999999999999999998855         222233444444444444  22332 221222


Q ss_pred             HHHHHHhhh-hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh---ccchHHHHHHHHHHHHHHH
Q 019567           78 VRAFFGLAE-GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---IGISGPFILFSSLGLLWLS  153 (339)
Q Consensus        78 ~r~l~G~g~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~---~~w~~~f~~~~~~~~~~~~  153 (339)
                      .-+..+.+. |...+....-..|.. +++-+..+|+.+....+...++|.+.+.+.++   -.||.+|++.+++.++..+
T Consensus       363 ~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i  441 (466)
T KOG2532|consen  363 ILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNI  441 (466)
T ss_pred             HHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhch
Confidence            222222222 222222233333334 58889999999999999999999999998842   3699999999998888776


Q ss_pred             HHHhhc
Q 019567          154 TWTSKV  159 (339)
Q Consensus       154 ~~~~~~  159 (339)
                      ...++-
T Consensus       442 ~f~~f~  447 (466)
T KOG2532|consen  442 IFLFFG  447 (466)
T ss_pred             heeEee
Confidence            555553

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.23  E-value=1.7e-05  Score=70.83  Aligned_cols=132  Identities=8%  Similarity=0.019  Sum_probs=97.5

Q ss_pred             HHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHH
Q 019567          195 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR  274 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  274 (339)
                      +++.+++...+.+...+..++.....+++=-+++| .+-.+..-|........+.++.-+..+++.+|+|+.        
T Consensus       366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv--------  436 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV--------  436 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc--------
Confidence            56677777777777777777777777787778888 465666677666666677888889999999999975        


Q ss_pred             HHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh-hc-ccchhhhhhh
Q 019567          275 KIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IA-QDFSTALQIQ  336 (339)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-p~~~g~~~g~  336 (339)
                       .++..++.+...=++.+....++|....+=++-....+..+....+.+. +. |+.+.++++.
T Consensus       437 -~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l  499 (618)
T KOG3762|consen  437 -NVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGL  499 (618)
T ss_pred             -ceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHH
Confidence             5667788888888888888888887766666666677777777777777 44 4556665554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.22  E-value=7.9e-09  Score=94.02  Aligned_cols=157  Identities=19%  Similarity=0.255  Sum_probs=106.3

Q ss_pred             hhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHh--hhh-hcc-----hhHHHH
Q 019567            6 VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP--WAA-THS-----TASLLA   77 (339)
Q Consensus         6 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~--~~~-~~~-----~~~~~~   77 (339)
                      |.+.++.+.++.  -.......+...++.++...+.||+|||+.++.+..+.+++.+..+  ... .++     ...+. 
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-  353 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV-  353 (451)
T ss_pred             cccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce-
Confidence            445556666555  1222233344556777777999999999999999988887777663  111 121     22222 


Q ss_pred             HHHHHHhhhh-cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           78 VRAFFGLAEG-VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        78 ~r~l~G~g~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      .-.+.....+ ...+....+..|.+|.+.|++..++......++..+++.+...+.+..+-...+.+.+..+++..+..+
T Consensus       354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~  433 (451)
T PF00083_consen  354 FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVY  433 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhee
Confidence            2222222222 234666688899999999999999999999999999998887777766634556666677777777788


Q ss_pred             hhccCCCCC
Q 019567          157 SKVTNDPCN  165 (339)
Q Consensus       157 ~~~~~~~~~  165 (339)
                      ++.||++.+
T Consensus       434 ~~lpET~g~  442 (451)
T PF00083_consen  434 FFLPETKGK  442 (451)
T ss_pred             EEEeeCCCC
Confidence            888998764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.18  E-value=2.2e-05  Score=69.59  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcc-------hhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcc---hhhHHHHHHHHHH
Q 019567           48 KVLAWGVALWSLSTLLTPWAATHS-------TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSH---ERASAIGICMGGF  117 (339)
Q Consensus        48 ~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  117 (339)
                      |++.++.++..+|.++..++..++       .+.++++-.+.++|.|+.-|...++.+|.++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            678889999999998853332222       257899999999999999999999999999765   5677889999999


Q ss_pred             HHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567          118 HLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus       118 ~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      ++|..++..+.+++.++.+|.+.|.+.++..++..+..+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999888877766655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.16  E-value=3.1e-06  Score=73.97  Aligned_cols=159  Identities=14%  Similarity=0.117  Sum_probs=108.7

Q ss_pred             chhhhHhHhCCCccchhH--------HHHHH-HHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcc---
Q 019567            4 AVVPLAAKFGWSSSFLGI--------VQSSF-LWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHS---   71 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~--------~~s~~-~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~---   71 (339)
                      ....+-+++++.+.+...        ...+. .+++..+-.+...+.|++|||+..+.+.+++++..+..  +...|   
T Consensus       326 ~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~--~~~y~~~~  403 (538)
T KOG0252|consen  326 FQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVI--AGPYNQLE  403 (538)
T ss_pred             HHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHH--cCCccccc
Confidence            345566666665554333        11111 12223355667789999999999999999999988887  43444   


Q ss_pred             -hhHHHHHHHHHHhhhh-cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-----hccchHHHHHH
Q 019567           72 -TASLLAVRAFFGLAEG-VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-----TIGISGPFILF  144 (339)
Q Consensus        72 -~~~~~~~r~l~G~g~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-----~~~w~~~f~~~  144 (339)
                       ...+++...+..+... +-......+-+|.+|.+-|+..-|+..+..-.|.+++...-.++.+     ..+-|.++++.
T Consensus       404 ~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~  483 (538)
T KOG0252|consen  404 NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIIL  483 (538)
T ss_pred             ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHH
Confidence             2223333333333211 1223445566899999999999999999999999999999889988     77899999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCC
Q 019567          145 SSLGLLWLSTWTSKVTNDPCN  165 (339)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~  165 (339)
                      +..+++..+..+ +.||++.+
T Consensus       484 ~~~~~~gi~~T~-l~pEtk~~  503 (538)
T KOG0252|consen  484 AGCMLLGILFTL-LIPETKGK  503 (538)
T ss_pred             HHHHHHhHheeE-Eeeccccc
Confidence            888877555444 45676654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=0.00014  Score=67.53  Aligned_cols=150  Identities=15%  Similarity=0.095  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcch-hHHHHHHHHHHhhhhcchhhhHHHHhh
Q 019567           21 IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHST-ASLLAVRAFFGLAEGVAMPAMSTLTSR   99 (339)
Q Consensus        21 ~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~l~G~g~~~~~~~~~~~i~~   99 (339)
                      .................+...||+|||.....+..+..++.+..++...... +...+...+...+.+..+.....+..|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444445555666689999999999999999999999999855322222 245566666666666667777999999


Q ss_pred             hCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCh
Q 019567          100 WFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSK  171 (339)
Q Consensus       100 ~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (339)
                      .+|...|..+.+..+....+|.+++|.+...... ......+.+.+..+.+...+...+.||+.......+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL  504 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence            9999999999999999999999999988755544 2223333334556666666666788888776554333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.16  E-value=1.4e-05  Score=52.90  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          205 VIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      +-...++..........++|.|+++ .|+|+.+.|.+.++..+...++.+++|+++||.+++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            4456677777888888999999998 699999999999999999999999999999999886

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.16  E-value=6.5e-06  Score=54.44  Aligned_cols=55  Identities=24%  Similarity=0.303  Sum_probs=48.0

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALW   57 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~   57 (339)
                      |.+|...++.|+|+.|+|.+.++..+...++++++|.++||+++++.+.....++
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            4556667789999999999999999999999999999999999998887765543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.05  E-value=4.3e-05  Score=68.25  Aligned_cols=107  Identities=12%  Similarity=-0.077  Sum_probs=79.8

Q ss_pred             HhhhhhhhhhhCCccch-hhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchh
Q 019567          221 SWMPIYFNTVFNVNLKQ-AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPA  299 (339)
Q Consensus       221 ~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (339)
                      .+...++.+.+|++.++ .+.+...+..+..+..+++|+++||+|.|         +++..+.+...+...+..+.++..
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K---------~vL~l~~l~Wsl~t~L~~fa~Sl~  116 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK---------PVLVLQALSFVCVWLLLLLGTSVW  116 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666679999999 99999999999999999999999999976         677788888888888877776655


Q ss_pred             HHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          300 VAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      ...+.=++.+...+... .......  +.+++++++.+.-
T Consensus       117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~  155 (511)
T TIGR00806       117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYS  155 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHH
Confidence            54444444444444444 4444444  7778898887753

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.03  E-value=2.1e-05  Score=71.46  Aligned_cols=141  Identities=11%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             hhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhh----hcchHHHHHHHHHHHHHH-HHHhhhhhcchhHHHHH
Q 019567            5 VVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK----YGGKKVLAWGVALWSLST-LLTPWAATHSTASLLAV   78 (339)
Q Consensus         5 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr----~G~r~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (339)
                      +|.+-++ .|.|..+.+.+...+.++..++.+++|.++||    ..+|........+..+.. +..  ...++.......
T Consensus       296 lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l--~~~~~~~~~~~~  373 (495)
T KOG2533|consen  296 LPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISL--LAAAVLPGAYGA  373 (495)
T ss_pred             HHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HhhccchHHhHH
Confidence            4566666 56899999999999999999999999999999    677777776666665544 433  223334444444


Q ss_pred             HHHHHhhhhcchhhhHHHHhhhCCcchh-hHHHHHHHHHHHHHHHHHHhH-HHHhhhhccchHHHHHHHHH
Q 019567           79 RAFFGLAEGVAMPAMSTLTSRWFPSHER-ASAIGICMGGFHLGNVVGLLL-TPIMLSTIGISGPFILFSSL  147 (339)
Q Consensus        79 r~l~G~g~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~l-~~~l~~~~~w~~~f~~~~~~  147 (339)
                      -+....+.....+.......+...++.| -...+....+.+.+..++|.+ .+.....+.|-..|......
T Consensus       374 ~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~  444 (495)
T KOG2533|consen  374 FLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA  444 (495)
T ss_pred             HHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence            4444444555666677777777754433 334444445555544444433 34455567888888544333

>PTZ00207 hypothetical protein; Provisional

Probab=97.97  E-value=0.00015  Score=67.30  Aligned_cols=150  Identities=15%  Similarity=0.049  Sum_probs=108.2

Q ss_pred             hhhHhHh-CCCc-cchhH-HHHHHHHHHHHHHhhhHHHhhh---------hcchHHHHHHHHHHHHHHHHHhhhhhcchh
Q 019567            6 VPLAAKF-GWSS-SFLGI-VQSSFLWGYIFSSVIGGALVDK---------YGGKKVLAWGVALWSLSTLLTPWAATHSTA   73 (339)
Q Consensus         6 ~~i~~~~-~~s~-~~~g~-~~s~~~~~~~i~~~~~g~l~dr---------~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~   73 (339)
                      .+|.+.+ |.++ .+... +.+++.++..+|.+..|.+...         +.|--.+.+..+ +.++.++.  +..-...
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll--~~~~p~~  453 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTL--FLTLPKA  453 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHH--HHHCCcc
Confidence            3566777 5522 32222 7888888888888888887722         222223334444 66666666  3333336


Q ss_pred             HHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHH-HhHHHHhhhhc----------c---chH
Q 019567           74 SLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVG-LLLTPIMLSTI----------G---ISG  139 (339)
Q Consensus        74 ~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~l~~~l~~~~----------~---w~~  139 (339)
                      .+++.-++.|++.|..++.....++|.|. |+-|+-..+......+|..+- ..+.|.+.|.-          |   .|.
T Consensus       454 ~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~  532 (591)
T PTZ00207        454 ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVM  532 (591)
T ss_pred             HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHh
Confidence            89999999999999999999999999998 999999999999999998887 45667666521          1   788


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 019567          140 PFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus       140 ~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +|++.+.+++...+......
T Consensus       533 ~~~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        533 PLAFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHHHhhee
Confidence            99999999888776655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.93  E-value=0.0005  Score=63.74  Aligned_cols=111  Identities=18%  Similarity=0.199  Sum_probs=87.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTL   96 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~   96 (339)
                      +.++....+.++...++.+.|.+..+++| |+.++++.+++.++...+.....+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            57888888999999999999999998887 55556777666654444422334566677788899999999988888887


Q ss_pred             HhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH
Q 019567           97 TSRWFPSHERASAIGICMGGFHLGNVVGLLLT  128 (339)
Q Consensus        97 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  128 (339)
                      ..-..|+++-+.+.++....-.+|..+|..+.
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            77778888999999998888888888877654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.92  E-value=0.0023  Score=55.17  Aligned_cols=241  Identities=14%  Similarity=0.062  Sum_probs=131.4

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhh-----hhcchHHHHH-HHHHHHHHHHHHhhh---------h
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVD-----KYGGKKVLAW-GVALWSLSTLLTPWA---------A   68 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d-----r~G~r~~l~~-~~~~~~~~~~~~~~~---------~   68 (339)
                      .+|.+-+.=|.|.++.+...-++.=  ...-+.+.++.|     |+||||.-++ +..+.+......+.-         .
T Consensus        52 ~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~  129 (510)
T KOG3574|consen   52 AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGG  129 (510)
T ss_pred             hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCC
Confidence            4677777777777776554433221  234678888999     9999885433 222222222222110         1


Q ss_pred             hcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh-------hccch---
Q 019567           69 THSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS-------TIGIS---  138 (339)
Q Consensus        69 ~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~-------~~~w~---  138 (339)
                      .+|...+...-++.-+..+.-..+.-.+.-...++++.|-+......+.+.|..++..+--.+..       ..+|.   
T Consensus       130 ~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~  209 (510)
T KOG3574|consen  130 LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQ  209 (510)
T ss_pred             CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCcc
Confidence            22333333445566666666666666776677777887777777666666666666543211111       11232   


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhh
Q 019567          139 ------GPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITN  212 (339)
Q Consensus       139 ------~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (339)
                            ...++.+.+.++...+..+..+|++++..  ++.+.          ...+..+-++++++-|.+..........
T Consensus       210 g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~--~e~~~----------~i~~~yk~l~~vLklk~v~~la~i~lt~  277 (510)
T KOG3574|consen  210 GFITLAGYLWFWGALFIVATTLVALLKKENDESVD--EELEL----------GIHESYKLLRDVLKLKSVRWLAGILLTG  277 (510)
T ss_pred             ceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh--hhhhc----------CHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence                  12333344444444444444333332210  00000          0111112457788888888888877777


Q ss_pred             HHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhh
Q 019567          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKA  259 (339)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  259 (339)
                      -.++.+-....+.-+.| +|.+.++-+.+.....-.+++.....|++
T Consensus       278 K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~  323 (510)
T KOG3574|consen  278 KLGFQAADALTSLKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKW  323 (510)
T ss_pred             HHHhhhhhhccchHHHH-cCCChhHheeeeeehhhHHHhhhhhheee
Confidence            78888877888888888 59998887766533322333333333333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.89  E-value=0.00037  Score=63.00  Aligned_cols=123  Identities=27%  Similarity=0.300  Sum_probs=108.3

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhH-HHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGG-ALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAE   86 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g-~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~   86 (339)
                      +...+++++.+.+...+.......+++.+.. .+...+|-|++...|+....+.....  +++++.|+.+....+.++. 
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~--af~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLF--AFATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHH--HHhccchhhhHHHHHHHhh-
Confidence            4456899999999999988888888888877 77888899999999999999999999  6689999999999888886 


Q ss_pred             hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 019567           87 GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS  133 (339)
Q Consensus        87 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  133 (339)
                      ....|...+.++.+.+++++|+..++.+....+...++|.+-+.+..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            66789999999999999999999999999999999999988766643

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.88  E-value=0.00026  Score=57.73  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhHHHHh---h--hhccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHH
Q 019567          104 HERASAIGICMGGFHLGNVVGLLLTPIM---L--STIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQ  178 (339)
Q Consensus       104 ~~r~~~~~~~~~~~~~g~~~~~~l~~~l---~--~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (339)
                      |+|+....+...+.++|.++.-..--.-   .  -.-+|++.+.+.+++.++.+++..++-.|-....+. +++++    
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k----   76 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEK----   76 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-ccccc----
Confidence            5566666677777788877654332111   1  123599999999888877666666553322111111 01110    


Q ss_pred             hCCccccccCCCccHHHHhcchhHHHHHHHHHhh
Q 019567          179 AGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITN  212 (339)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (339)
                          ++...+.+.+..+.+|++..|...+.+...
T Consensus        77 ----~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~w  106 (267)
T PF07672_consen   77 ----ENSTLSKKPSYKSILKEKETWKWILIYGIW  106 (267)
T ss_pred             ----ccccccccchHHHHHccchHHHHHHHHHHH
Confidence                012233446789999999988876655443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.48  E-value=0.0024  Score=57.13  Aligned_cols=144  Identities=16%  Similarity=0.043  Sum_probs=108.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHhhhhcch-------HHHHHHHHHHHHHHHHHhhh---hh-----cchhHHHHHHHH
Q 019567           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGK-------KVLAWGVALWSLSTLLTPWA---AT-----HSTASLLAVRAF   81 (339)
Q Consensus        17 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r-------~~l~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l   81 (339)
                      -..+|.++...+...+.+|+..++-.|.++|       .-+-++..+.+.+.++....   ..     .+.++++...++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457888999999999999998888885554       33456666666666655332   11     356889999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHH------hhhhccchHHHHHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPI------MLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~------l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      +++|+=+..|.+.+++....|++-.+..++.+-.....|..++..+++.      ..+...-...|..++...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888888888877763      3334455667777777777666555


Q ss_pred             Hhhcc
Q 019567          156 TSKVT  160 (339)
Q Consensus       156 ~~~~~  160 (339)
                      ....|
T Consensus       484 ~~~~~  488 (498)
T COG3104         484 LLLSP  488 (498)
T ss_pred             HHhhH
Confidence            54433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.46  E-value=0.0014  Score=59.37  Aligned_cols=123  Identities=13%  Similarity=0.145  Sum_probs=97.8

Q ss_pred             CCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh--------hcchhHHHHHHHHHHhh
Q 019567           14 WSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA--------THSTASLLAVRAFFGLA   85 (339)
Q Consensus        14 ~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~g   85 (339)
                      .|+...+.+..+..++..++..+..+..-+..-|+++....++.++..+.--...        .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            7888888888888888899999999988888999999888888777665421100        12333344455666776


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG  136 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  136 (339)
                      ....+-+...+++|.-|+...|...++.....++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            677778888999999999999999999999999999999999999887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.40  E-value=0.00074  Score=55.70  Aligned_cols=114  Identities=12%  Similarity=-0.008  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      ....|.+..|.|.. ++.+|+|.+|...+.....++..+ .++.|.+.||++.+         ..+.++.+...+++..+
T Consensus        15 ~Gt~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~---------~~l~iG~~~~~~GY~~~   83 (250)
T PF06813_consen   15 SGTTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW---------VVLLIGAVLGFVGYGLL   83 (250)
T ss_pred             cCcccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH---------HHHHHHHHHHHHHHHHH
Confidence            33456666666654 566899999999999888888876 58889999999875         66667777777777666


Q ss_pred             hcc-----c--chhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhhhhh
Q 019567          293 NYA-----K--SPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQIQQ  337 (339)
Q Consensus       293 ~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~q  337 (339)
                      ...     +  +.|.......++................ ..|++||.+.|..
T Consensus        84 ~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgil  136 (250)
T PF06813_consen   84 WLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGIL  136 (250)
T ss_pred             HHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhh
Confidence            543     1  1122222222222222222223223233 6689999987753

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.39  E-value=0.0022  Score=59.58  Aligned_cols=154  Identities=15%  Similarity=0.089  Sum_probs=121.8

Q ss_pred             chhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhh-hhc-----------
Q 019567            4 AVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWA-ATH-----------   70 (339)
Q Consensus         4 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~-~~~-----------   70 (339)
                      ++..+.++++.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++..++..+..+. ..+           
T Consensus        60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~  139 (571)
T KOG1237|consen   60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKP  139 (571)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCC
Confidence            45667788888888888888888888889999999999976 99999999999998886654321 000           


Q ss_pred             --------c---hhHHHHHHHHHHhhhhcchhhhHHHHhhhCC---cc-h--hhHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 019567           71 --------S---TASLLAVRAFFGLAEGVAMPAMSTLTSRWFP---SH-E--RASAIGICMGGFHLGNVVGLLLTPIMLS  133 (339)
Q Consensus        71 --------~---~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~---~~-~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~  133 (339)
                              +   ...+..+.-+..+|.|+.-|...+.=+|-++   ++ +  +...+.++....+.|..++..+..++-+
T Consensus       140 ~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~  219 (571)
T KOG1237|consen  140 GGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD  219 (571)
T ss_pred             CCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh
Confidence                    0   1356677778888999999999999999997   22 2  3367889999999999999999888888


Q ss_pred             hccchHHHHHHHHHHHHHHHHHHh
Q 019567          134 TIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus       134 ~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      +.+|.+.|.+..+...+..++++.
T Consensus       220 ~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  220 NVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             cccceeeccHHHHHHHHHHHHHHc
Confidence            999999999988877766555443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.38  E-value=0.097  Score=47.06  Aligned_cols=247  Identities=9%  Similarity=0.008  Sum_probs=138.9

Q ss_pred             CccchhHHHHHHHH-HHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhh-------cc---------------
Q 019567           15 SSSFLGIVQSSFLW-GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAAT-------HS---------------   71 (339)
Q Consensus        15 s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~-------~~---------------   71 (339)
                      ++..+.++-+..-+ +..+..++..++++++.+++++-+-+..+....+++++..-       ++               
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            45567777777777 67788999999999999999998888888777777754311       11               


Q ss_pred             --------hhHHHHHHHHHHhhhhcchh-hhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc------
Q 019567           72 --------TASLLAVRAFFGLAEGVAMP-AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG------  136 (339)
Q Consensus        72 --------~~~~~~~r~l~G~g~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~------  136 (339)
                              .|.........=+=...... .-.....|....+|-.|..+.++.+.+++..++..+..++.++..      
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~  218 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF  218 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence                    02222222222221122212 335567788888889999999999999999999998888866321      


Q ss_pred             ----chHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhh
Q 019567          137 ----ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITN  212 (339)
Q Consensus       137 ----w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (339)
                          -+..+.+.+..+.+...+..+.-+...+++....+..    .++++++.+-.-..+.+.+.|+|..+.+.+...++
T Consensus       219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~----~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y  294 (509)
T COG3202         219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAK----KKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAY  294 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHh----cccccccccCcHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                2344555555555555444444333333222110000    00000011111223566777888887777777666


Q ss_pred             HHHHHHHHHhhhhhhhhhhCCccchhhHh---hHHhHHH-HHHHHhhhhhhhHHHHH
Q 019567          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWF---SAVPWGT-MAVSGYMAGKASDSLIK  265 (339)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~---~~~~~~~-~~~~~~~~g~l~d~~~~  265 (339)
                      +.....+-..--.-.++.+..+.+..++.   ....++. .++...+++.+.+|.|-
T Consensus       295 ~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW  351 (509)
T COG3202         295 GVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGW  351 (509)
T ss_pred             HHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhH
Confidence            66655444322222333233333333333   3333333 33344566777777664

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.31  E-value=0.00043  Score=51.45  Aligned_cols=87  Identities=9%  Similarity=-0.099  Sum_probs=52.7

Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhh
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLL  321 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (339)
                      .....++..++.++.|++.||+++|         +....+.....++.......++.+.......+.....+...+....
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   74 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRK---------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA   74 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchh---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455677888999999999999876         4445555555555555555555554444444444444444444444


Q ss_pred             hhh--hcccchhhhhhhh
Q 019567          322 NIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       322 ~~~--~~p~~~g~~~g~q  337 (339)
                      ...  ..+++++...+..
T Consensus        75 ~~~~~~~~~~~~~~~~~~   92 (141)
T TIGR00880        75 LIADIYPPEERGVALGLM   92 (141)
T ss_pred             HHHHHCChhhhhHHHHHH
Confidence            444  4456677776654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.26  E-value=0.0018  Score=55.88  Aligned_cols=122  Identities=20%  Similarity=0.259  Sum_probs=105.3

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhc--chHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhh
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYG--GKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~   87 (339)
                      +.||.++.|.|-+.+...+...+.+....+..||..  -+-.+..++.+..-..++.  ..++....+..+-.+-.+..+
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~lll--s~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLL--SLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHH--hccccchhhhHHHHHHHHHHH
Confidence            568999999999999999999999999999999987  6667777766666666666  446777888899999999888


Q ss_pred             cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 019567           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS  133 (339)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~  133 (339)
                      ...+....++....|.++||..+|+......++-++||+++|.+..
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            8888899999999999999999999999999999999999987755

>PRK03612 spermidine synthase; Provisional

Probab=97.23  E-value=0.013  Score=54.28  Aligned_cols=141  Identities=21%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             hHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHH---HHHHhh--hhhcch-hHHHHHHHHHH
Q 019567           10 AKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS---TLLTPW--AATHST-ASLLAVRAFFG   83 (339)
Q Consensus        10 ~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~---~~~~~~--~~~~~~-~~~~~~r~l~G   83 (339)
                      --+|-+..+.+.+.+.+..|.++|+.+++++.++.-++.. .+-..+..++   ..+...  ...... ..++..-++.+
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~  121 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIG  121 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777888999999999999999999988754333322 2211111111   111100  001111 12233445667


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh-hhccchHHHHHHHHHHHHHH
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIGISGPFILFSSLGLLWL  152 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~w~~~f~~~~~~~~~~~  152 (339)
                      +..|...|....+..+.. .++-++..|-......+|.++|.++.+++. ..+|-....++.+.+.++..
T Consensus       122 ~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a  190 (521)
T PRK03612        122 LLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            777777777777665533 234566778888888899999988876654 45665444444444444433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.19  E-value=0.041  Score=49.54  Aligned_cols=67  Identities=10%  Similarity=-0.037  Sum_probs=46.9

Q ss_pred             HHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHH
Q 019567          194 RHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIK  265 (339)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  265 (339)
                      .+++|.|++..+.+.....-.++.........-+.| .|++-++.+.+..+    ..+.+++.|+++.|+.+
T Consensus       272 ~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li----~~P~qii~~~~~~Kws~  338 (544)
T PF13000_consen  272 WKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLI----DFPFQIILPYYIGKWSA  338 (544)
T ss_pred             HHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHH----hhhHHHHHHHHhhhhhc
Confidence            456777888888877777777776666666666777 59998887766544    55666666777666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.15  E-value=0.00069  Score=64.31  Aligned_cols=71  Identities=13%  Similarity=0.026  Sum_probs=51.6

Q ss_pred             HHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhc
Q 019567          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (339)
Q Consensus       215 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (339)
                      ...+.....-.-++++++++..+.|++.+...++..++.++.+++.||.+|+         +.+..+.++.+++.+++..
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~---------~~i~~g~ll~~lg~ll~al  117 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP---------IVIGIGCAIMGLGSFLLSL  117 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc---------eEEEecHHHHHHHHHHHhC
Confidence            3334443333445666999999999999999999999999999999999876         4445555565555555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.08  E-value=0.0032  Score=42.14  Aligned_cols=78  Identities=15%  Similarity=0.233  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          213 NWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       213 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      ..+-+.+...+|...+| .++|.++.+++.+...++..+|.+...++.++.++         ...+..+.+...+.....
T Consensus         5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRP---------RRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHH
Confidence            34556677788877766 69999999999999999999999999888876443         356667777777777777


Q ss_pred             hcccchhH
Q 019567          293 NYAKSPAV  300 (339)
Q Consensus       293 ~~~~~~~~  300 (339)
                      .+.++.+.
T Consensus        75 a~~~~~~~   82 (85)
T PF06779_consen   75 ALTHSFWL   82 (85)
T ss_pred             HHHhchHH
Confidence            77665543

Note that many members are hypothetical proteins.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.05  E-value=0.0015  Score=57.78  Aligned_cols=121  Identities=9%  Similarity=0.016  Sum_probs=80.6

Q ss_pred             HHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhh
Q 019567          206 IIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGP  285 (339)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  285 (339)
                      .+...+...-.+......+. .++.+|.++...|++.....+..++++++.|++.||+.|+         +++..+..+-
T Consensus        39 ~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~---------~v~~vG~~iW  108 (493)
T KOG1330|consen   39 CLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK---------RVIAVGIFIW  108 (493)
T ss_pred             HHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc---------eEEeeHHHHH
Confidence            33334343333433333332 3455899999999999999999999999999999999865         7778888888


Q ss_pred             hhHhhhhhcccchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhh
Q 019567          286 GVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      .++.+...+....|...++=.+.+..-....+...+...  ...++|+.+.+.
T Consensus       109 ~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i  161 (493)
T KOG1330|consen  109 TLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI  161 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence            888888777755555444433333333344444444444  444677877764

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.98  E-value=0.088  Score=47.64  Aligned_cols=52  Identities=19%  Similarity=0.175  Sum_probs=34.0

Q ss_pred             chhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhH
Q 019567           71 STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL  127 (339)
Q Consensus        71 ~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  127 (339)
                      .++..++.-++.|++.+........+.+. +|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence            45666777788899988887777777664 5644    3445555566665555544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.83  E-value=0.028  Score=50.65  Aligned_cols=100  Identities=15%  Similarity=0.199  Sum_probs=74.0

Q ss_pred             HHHHHHHhhhHHHh---hhhcchHHHHHHHHHHHHHHHHHhhh----------------hhcchhHHHHHHHHHHhhhhc
Q 019567           28 WGYIFSSVIGGALV---DKYGGKKVLAWGVALWSLSTLLTPWA----------------ATHSTASLLAVRAFFGLAEGV   88 (339)
Q Consensus        28 ~~~~i~~~~~g~l~---dr~G~r~~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~r~l~G~g~~~   88 (339)
                      ++..++..+.+.+.   +|+||++.+.++..+..++.++.-+.                +.+++....+.-++.|++.+.
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~  369 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC  369 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence            33344444455555   46799999999999988888876221                112456777888999999999


Q ss_pred             chhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHH
Q 019567           89 AMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLT  128 (339)
Q Consensus        89 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  128 (339)
                      .....+.++++.+ +++|..+.++...-..++..++-...
T Consensus       370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999 58888888888777777766655444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.48  E-value=0.17  Score=44.58  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             hhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcch
Q 019567           72 TASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHE  105 (339)
Q Consensus        72 ~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~  105 (339)
                      +...++.-.+.+.+.|..........++ +|+|.
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence            4555666777888877766666666555 55554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.30  E-value=0.047  Score=47.17  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             hhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          230 VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .+|++.++.+.++........+...+.|.++||+|||
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk   99 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK   99 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            4899999999999999999999999999999999986

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.22  E-value=0.015  Score=51.52  Aligned_cols=149  Identities=13%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             CCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcc-hHHHHHHHHHHHHHHHHHhh-h-hhcchhHHHHHHHHHHhhhhcc
Q 019567           13 GWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGG-KKVLAWGVALWSLSTLLTPW-A-ATHSTASLLAVRAFFGLAEGVA   89 (339)
Q Consensus        13 ~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~-r~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~r~l~G~g~~~~   89 (339)
                      |.+....|++.....++..+++...|.+.||... |.++.+......++...... . .....+.+...-.+.|.+....
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            4455688999999999999999999999999865 55555555555555322110 0 1123355666677788887888


Q ss_pred             hhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc---chHH-HHHHHHHHHHHHHHHHhhccC
Q 019567           90 MPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG---ISGP-FILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        90 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~---w~~~-f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      .|...-+-.|..-|..-+.-.|+.+....+=..+-...-+...+..+   |..+ -+.....+++..++..++.|+
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            89888887776644444555566555444444444445555555554   3332 233333333334444444343

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.68  E-value=0.13  Score=45.56  Aligned_cols=112  Identities=16%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             cchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHH--HHHHHHHHHhh-hhhcchhHHHHHHHHHHhhhhcchhhh
Q 019567           17 SFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVA--LWSLSTLLTPW-AATHSTASLLAVRAFFGLAEGVAMPAM   93 (339)
Q Consensus        17 ~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~g~~~~~~~~   93 (339)
                      ++..+....|.+|-.++.--...+  |+  |+..+.+.+  +-.+..++.++ -+.++.|..++.-+..|+..|..+...
T Consensus       281 ~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  281 DQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            455666667776665554322111  33  333333322  22222222211 235788888899999999999999999


Q ss_pred             HHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh
Q 019567           94 STLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML  132 (339)
Q Consensus        94 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~  132 (339)
                      ...+.|-.|+++|..++|..+.+-++|..++..++-.+-
T Consensus       357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998886654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.47  E-value=0.82  Score=39.15  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCC
Q 019567           26 FLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFP  102 (339)
Q Consensus        26 ~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~  102 (339)
                      ..+..+.+.++.+.+..++|-|+++.++.......-..-   .-+.+..++-.-...|+|.+..+..--+++++.-.
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N---l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN---LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh---cchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            344556677777799999999999999888876644332   24678889999999999999998888777766553

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.40  E-value=0.47  Score=42.76  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh-hh---c----chhHHHHHHH
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA-AT---H----STASLLAVRA   80 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~-~~---~----~~~~~~~~r~   80 (339)
                      .++-|+++..+|..-+.-.+....+.+...++.+|+|..|.-..+...-.+...++... +.   +    +...++.+-.
T Consensus       285 l~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~  364 (432)
T PF06963_consen  285 LKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIA  364 (432)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Confidence            33449999999999999999999999999999999999988888766443333332111 11   1    3344455555


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHH
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTP  129 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  129 (339)
                      +.-+|.=.......-++.|..|+++||...|.-....++-.++-..++-
T Consensus       365 ~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  365 LSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555655667778889999999999999999999988887777666653

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.36  E-value=0.19  Score=42.51  Aligned_cols=137  Identities=16%  Similarity=0.128  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHHhhh
Q 019567           21 IVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRW  100 (339)
Q Consensus        21 ~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~  100 (339)
                      .+.-+-.+...+..+......||+---.=..+..++.+.+..+.  +++++.++-+.+-.+..++.|.-...-..+-+ .
T Consensus        66 ~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lV--afs~s~~~sL~GV~~aSissGlGEiTFL~lss-~  142 (409)
T KOG3880|consen   66 AVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLV--AFSNSVPMSLLGVVFASISSGLGEITFLALSS-R  142 (409)
T ss_pred             hhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEE--EeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence            33333344455566666677888643322334445666667777  56888998888888888887765444444332 2


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh--ccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567          101 FPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--IGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus       101 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~--~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      +++    ...+-++.+.+.++++|..--..+.+.  .+-|...++...+.++.+...++.+++++.
T Consensus       143 Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes  204 (409)
T KOG3880|consen  143 YPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPES  204 (409)
T ss_pred             CCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence            332    234455566666666666555555553  346777777777766666666655554443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.87  E-value=0.033  Score=49.47  Aligned_cols=89  Identities=20%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHH
Q 019567          202 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG  281 (339)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  281 (339)
                      ........+...+.+..=.+++|+|+++ .|.+....+......-+.+.+.+++.|..+||-..|.-+    ||..+..+
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR----RRPfI~~~  108 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR----RRPFILAG  108 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccccccccccccccc----ccchHHHh
Confidence            4444555566666777778999999999 699999999998888899999999999999974332110    34666666


Q ss_pred             hhhhhhHhhhhhcc
Q 019567          282 FIGPGVSLLCLNYA  295 (339)
Q Consensus       282 ~~~~~~~~~~~~~~  295 (339)
                      .....+.+.++.+.
T Consensus       109 s~~i~~~l~Lig~a  122 (498)
T KOG0637|consen  109 SLLIAVSLFLIGYA  122 (498)
T ss_pred             hHHHHHHHhhhhhH
Confidence            66666666666554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=92.94  E-value=0.13  Score=46.57  Aligned_cols=109  Identities=13%  Similarity=0.046  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhhhhh-hhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHH
Q 019567          202 SWTVIIANITNNWGYFVLLSWMPIYFNT-VFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI  280 (339)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  280 (339)
                      .+...+..++....+.....-.-+|+++ ..+-+.+..|+..+...++..+++++.|+...|.+..        |+-++.
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~--------k~Pli~  107 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV--------KKPLIV  107 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc--------ccCHHH
Confidence            3444444555544444444444456665 2366777889999999999999999999999987753        244566


Q ss_pred             HhhhhhhHhhhhh-cc--cchhHHHHHHHHHHHHhhhcccchh
Q 019567          281 GFIGPGVSLLCLN-YA--KSPAVAAVLITIALSLSSFSQAGYL  320 (339)
Q Consensus       281 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  320 (339)
                      +.+++.++.+++. ..  ++.  ....++++-.+.|+..+...
T Consensus       108 s~ii~~~g~llY~~l~~~~~~--~~y~mL~~R~l~Gvg~~n~a  148 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNG--VKYLMLVARILTGVGVGNFA  148 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHcCcCcccHH
Confidence            7777777776663 22  232  22234445555555544433

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=91.89  E-value=1.2  Score=41.53  Aligned_cols=77  Identities=9%  Similarity=0.098  Sum_probs=37.0

Q ss_pred             CCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHH
Q 019567          188 RNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIK  265 (339)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  265 (339)
                      ..+..-.|++|.|+-..+ +..+...+............+.-..-.++...|.+....-+.-++.+.++|+.+-|+-+
T Consensus       246 GWKlvhgDVFR~P~~~~l-ls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk  322 (521)
T PF02990_consen  246 GWKLVHGDVFRPPKHPML-LSALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK  322 (521)
T ss_pred             chhhhhHHHhcCcCCchH-HHhHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334445788888764322 22222222222222333333333222355555555555555556666677777766654

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.40  E-value=4.8  Score=33.77  Aligned_cols=136  Identities=13%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhhcch--HHHHHHHHHHHHHHHHHhhh--hhc---chhHHHHHHHHHHhhhhcchh
Q 019567           19 LGIVQSSFLWGYIFSSVIGGALVDKYGGK--KVLAWGVALWSLSTLLTPWA--ATH---STASLLAVRAFFGLAEGVAMP   91 (339)
Q Consensus        19 ~g~~~s~~~~~~~i~~~~~g~l~dr~G~r--~~l~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~r~l~G~g~~~~~~   91 (339)
                      -|.+.+.++++..+++-+..++..|-..|  ..+.+..++..+...+.-+.  .++   +...-+++-.+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48999999999999999999988876554  45555554444433332111  112   222335556666677899999


Q ss_pred             hhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           92 AMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        92 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      ..+.+=+++.|++.|...+.++..-.++=..++-..-..=....+-|..|-++.+...+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999999988766555422221100000000124566777766665554433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=91.01  E-value=5.7  Score=30.30  Aligned_cols=86  Identities=10%  Similarity=0.025  Sum_probs=49.2

Q ss_pred             HhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhhcccch
Q 019567          240 WFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGY  319 (339)
Q Consensus       240 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (339)
                      .-.++......+..++.+.+.+++|.|         +.+.++.++..+-...... ++.+......++.+...+..+.+.
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K---------~sm~lg~~~y~~y~~~~~~-~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPK---------WSMILGSLGYAIYIASFFY-PNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhhHHhhHhh
Confidence            344556666778888899999999976         6666666666655555433 344444444444444455555544


Q ss_pred             hhhhh--hcccchhhhhh
Q 019567          320 LLNIQ--IAQDFSTALQI  335 (339)
Q Consensus       320 ~~~~~--~~p~~~g~~~g  335 (339)
                      .....  ..++.+++-.+
T Consensus       111 g~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTG  128 (156)
T ss_pred             hHHHHHcCCHHHHhhHHH
Confidence            44444  33344444333

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=90.03  E-value=1.9  Score=41.40  Aligned_cols=72  Identities=10%  Similarity=0.020  Sum_probs=51.5

Q ss_pred             HHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhc
Q 019567          215 GYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY  294 (339)
Q Consensus       215 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (339)
                      ++|++...+..|+.+.+|++...+..+...+....-+..+++|+++|++-.+        .+.+..+.++..++..++..
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~--------~~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK--------FKTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHh
Confidence            4566677788888888899998888888888888888889999999975443        24444445555555555443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=89.08  E-value=4.8  Score=35.42  Aligned_cols=122  Identities=14%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             HHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh----h-h-----cchhHHHHHHHHHHhhhhc--chhhhHHH
Q 019567           29 GYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA----A-T-----HSTASLLAVRAFFGLAEGV--AMPAMSTL   96 (339)
Q Consensus        29 ~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~----~-~-----~~~~~~~~~r~l~G~g~~~--~~~~~~~~   96 (339)
                      ...+..++.|...|+..|+|++...+++--++.+.++-.    + .     .+...+..+-++.-.-.+.  ....+.++
T Consensus        75 s~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i  154 (503)
T KOG2601|consen   75 SQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTI  154 (503)
T ss_pred             HHHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheE
Confidence            456778888999999999999988876654444443211    1 1     2455555555444332222  12222222


Q ss_pred             --HhhhC----CcchhhHHH---HHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHH
Q 019567           97 --TSRWF----PSHERASAI---GICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLL  150 (339)
Q Consensus        97 --i~~~~----~~~~r~~~~---~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~  150 (339)
                        -.||.    ..+.+....   +.....-..-..+.|.+.+.+.+..+-|..-...++-.++
T Consensus       155 ~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  155 LIERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV  217 (503)
T ss_pred             EecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence              23332    223344444   4444444455778899999998887777755544444444

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=89.04  E-value=6.8  Score=32.54  Aligned_cols=25  Identities=12%  Similarity=-0.226  Sum_probs=14.3

Q ss_pred             HHHHHhhHHHHHHHHHhhhhhhhhh
Q 019567          206 IIANITNNWGYFVLLSWMPIYFNTV  230 (339)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~  230 (339)
                      .+.........++.+..=..|.+++
T Consensus       184 G~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  184 GIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             hHHHHHHHHHHHhcccchHHHHHhC
Confidence            3444444555666666666677764

The region concerned is approximately 280 residues long.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=88.20  E-value=5.6  Score=33.19  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             HHHHHhhhhhhhhhhCCcc--chhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          217 FVLLSWMPIYFNTVFNVNL--KQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       217 ~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      .......+.+..+ .+.+.  ...+.......+...++.++.|++.||.|+|
T Consensus        19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~   69 (338)
T COG0477          19 GLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR   69 (338)
T ss_pred             chHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch
Confidence            3344455555555 34444  3677888888888888889999999999665

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.10  E-value=7.4  Score=35.42  Aligned_cols=62  Identities=21%  Similarity=0.281  Sum_probs=53.5

Q ss_pred             cchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 019567           70 HSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIM  131 (339)
Q Consensus        70 ~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l  131 (339)
                      ++-+..++.-++.|+..|.....++.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778899999999999999999999999999999999999999999999998876443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=87.75  E-value=5.1  Score=34.94  Aligned_cols=134  Identities=17%  Similarity=0.078  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhhcchHHHH--HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHHHH
Q 019567           20 GIVQSSFLWGYIFSSVIGGALVDKYGGKKVLA--WGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLT   97 (339)
Q Consensus        20 g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i   97 (339)
                      |..-++..+..+++.+..|.+--++.|..-++  ++.+.-+...+++  +.+++.|..+++.++.+.-.....+.+..-+
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m--~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~i  351 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM--AQTQHIWVCYAGYVLFRVIYQLTITIATFQI  351 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh--hcccceehhhhhHHHHHhhHhhhhhHHHHHH
Confidence            56667777888899999999988887764333  3444444444445  5678999999999999888888889999999


Q ss_pred             hhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-----------chHHHHHHHHHHHHHHHHHHhh
Q 019567           98 SRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-----------ISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        98 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-----------w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      ++..+++.-|..+|+.....-   ++=.++.....|.-|           +-.-|.+.+.+.++........
T Consensus       352 A~nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  352 ARNLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             HHhhhhhhheeeeehHHHHHH---HHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            999888888888887554332   232333333333211           2334666666666654444333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=85.71  E-value=29  Score=31.96  Aligned_cols=70  Identities=16%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             HHhhhhcchhhhHHHHhhhCCc-chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHH
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPS-HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLW  151 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~  151 (339)
                      .|+........--..+.+.+|. ++|...+|-.+...++.+.+..++++.+.+.+||...-.+.-++.++.
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4555555555566677888864 578999999999888888777777799999999999887766665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.62  E-value=0.067  Score=43.88  Aligned_cols=65  Identities=3%  Similarity=0.059  Sum_probs=48.2

Q ss_pred             CccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHh
Q 019567          190 PPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGY  254 (339)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  254 (339)
                      +.+|..-+++-.++.+.+.+.+.-........|++.|..+...++.+.-+++..+..+.....+.
T Consensus       191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~  255 (412)
T KOG4830|consen  191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSM  255 (412)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHh
Confidence            44677777777888888888888777777888999999887777777777766666655544443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=84.55  E-value=6.8  Score=35.10  Aligned_cols=99  Identities=16%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHH--HHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhh
Q 019567           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWG--VALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAM   93 (339)
Q Consensus        16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~   93 (339)
                      ..--|.+-++..+..+++++..|++-.++.+-.-+..+  .++.+...+++  ...+|.+..+++-++.+.......+.+
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm--~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLM--SFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33458888899999999999999997777764444433  33334444445  558999999999999998888888888


Q ss_pred             HHHHhhhCCcchhhHHHHHHHHH
Q 019567           94 STLTSRWFPSHERASAIGICMGG  116 (339)
Q Consensus        94 ~~~i~~~~~~~~r~~~~~~~~~~  116 (339)
                      ..-++....+++-+..+|+....
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHH
Confidence            88888888777777777775443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.26  E-value=2.7  Score=40.41  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=86.4

Q ss_pred             hhHhHhCCCccchhHHHHHHHH-HHHHHHhhhHHHhhhh--cchHHHHHHHHHHHHHHHHHh-hh---------------
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLW-GYIFSSVIGGALVDKY--GGKKVLAWGVALWSLSTLLTP-WA---------------   67 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~-~~~i~~~~~g~l~dr~--G~r~~l~~~~~~~~~~~~~~~-~~---------------   67 (339)
                      .++++|+.+.+++..+.+...+ +.++|.+++|++..|+  ..|.+....+++..+..+... ..               
T Consensus       418 yLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~  497 (735)
T KOG3626|consen  418 YLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNS  497 (735)
T ss_pred             HHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecC
Confidence            4778899999999998875554 5578888999999987  445555555555444444310 00               


Q ss_pred             ----------------------------------------------------h------------hc-------------
Q 019567           68 ----------------------------------------------------A------------TH-------------   70 (339)
Q Consensus        68 ----------------------------------------------------~------------~~-------------   70 (339)
                                                                          .            .+             
T Consensus       498 y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~  577 (735)
T KOG3626|consen  498 YEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGY  577 (735)
T ss_pred             CCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCC
Confidence                                                                0            11             


Q ss_pred             -------chhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHH-HHHHHHHhHHHHhhh
Q 019567           71 -------STASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFH-LGNVVGLLLTPIMLS  133 (339)
Q Consensus        71 -------~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~l~~~l~~  133 (339)
                             .+..+++.-++.-+..+...++.+.++-+..++|+|..++|+..+... +|.+=+|++-|+++|
T Consensus       578 C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  578 CPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence                   123344444444444455556677777888899999999999877665 688889999999887

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.94  E-value=0.39  Score=41.38  Aligned_cols=19  Identities=5%  Similarity=-0.144  Sum_probs=0.0

Q ss_pred             hhHHhHHHHHHHHhhhhhh
Q 019567          241 FSAVPWGTMAVSGYMAGKA  259 (339)
Q Consensus       241 ~~~~~~~~~~~~~~~~g~l  259 (339)
                      .+..++++..+|+.+.++.
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~  205 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWP  205 (309)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHhcchhccee
Confidence            4567788888898877764

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	339
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-05
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	3e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	9e-05

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score =  170 bits (434), Expect = 1e-49
 Identities = 55/320 (17%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
            +P   + G+S   LG   S     Y FS  I G++ D+   +  L  G+ L +   L  
Sbjct: 50  AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109

Query: 65  PWA--ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
            +   AT S A +  +    G  +G+  P        W+   ER   + +     ++G  
Sbjct: 110 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169

Query: 123 VG-LLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRLIQAGK 181
           +  LL    M           + +   +L      + + + P +       E +      
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 229

Query: 182 SDSVKKRNPP----SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
            +   ++        ++++L     W + IAN+      + +L W P Y   V +  L +
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           ++W   +          + G  SD + +     T V      +  +     +  +N A +
Sbjct: 290 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF----MTLVTIATIVYWMNPAGN 345

Query: 298 PAVAAVLITIALSLSSFSQA 317
           P V  + + +   L      
Sbjct: 346 PTVDMICMIVIGFLIYGPVM 365

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 18/160 (11%), Positives = 48/160 (30%), Gaps = 8/160 (5%)

Query: 8   LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY---GGKKVLAWGVALWSLSTLLT 64
           L     ++          + +  I  +++ G + DK           + + L +++T++ 
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338

Query: 65  PWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGIC-MGGFHLGNVV 123
                 +    +      G      +  +        P     +A G   + G+  G+V 
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398

Query: 124 GLLLTPIMLSTIGISGPFILFSS----LGLLWLSTWTSKV 159
              +    +   G  G F++         +L +     + 
Sbjct: 399 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 2/143 (1%)

Query: 8   LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA 67
           +A         +  V  ++L  Y  S +  G + D+ G + V+  G++++ L+TL+    
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--V 83

Query: 68  ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLL 127
            T S   L+A  A  G+  GV      TL    +   +   A  +   G  +  ++  L+
Sbjct: 84  TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143

Query: 128 TPIMLSTIGISGPFILFSSLGLL 150
             ++ +       ++    L   
Sbjct: 144 GGLLDTMWNWRACYLFLLVLCAG 166

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 40/287 (13%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 2   SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLST 61
            + +      F  ++   G++QS+F +GY    +  G L+ K   K  +  G+ L++L  
Sbjct: 46  DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105

Query: 62  LLTPWAATHSTASLLAVRAFFGLAEGVAM--PAMSTLTSRWFPSHERASAIGICMGGFHL 119
            L  W A       L +   F +A G+     A +   +   P       + +       
Sbjct: 106 AL-FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164

Query: 120 GNVVGLLLTPIMLSTIGISGPFILFSSL---GLLWLSTWTSKVTNDP---------CNSP 167
           G ++ ++    ++ +        +   +    L             P           + 
Sbjct: 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVAL 224

Query: 168 FVSKSELRLIQAGKSDSVKKRNPP-SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIY 226
            +  ++   +Q+      K+ +   SL  L         ++A            S++  Y
Sbjct: 225 LIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284

Query: 227 FNTVF-NVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTL 272
                  +    AA +         + G   G    S       L  
Sbjct: 285 AVEEIPGMTAGFAANYLTGTMVCFFI-GRFTGTWLISRFAPHKVLAA 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	339
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.93
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.57
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.39
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.97
2xut_A	524	Proton/peptide symporter family protein; transport	98.97

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.3e-36  Score=272.66  Aligned_cols=326  Identities=15%  Similarity=0.160  Sum_probs=250.1

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh----hcchhHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA----THSTASLLA   77 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~   77 (339)
                      ++.+|.+.+|+ .|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++  +.    ++|++.+++
T Consensus        48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~  124 (451)
T 1pw4_A           48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM--GFVPWATSSIAVMFV  124 (451)
T ss_dssp             HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCHHHHSSSSHHHH
T ss_pred             HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH--HhhhhccccHHHHHH
Confidence            35678899999 999999999999999999999999999999999999999999999999999  66    899999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+.+..| ||+.|++.++++++..++.+
T Consensus       125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~  204 (451)
T 1pw4_A          125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF  204 (451)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999889898 99999999998888777777


Q ss_pred             hhccCCCCCCCCCChHHHHH--HHhCCccccccCCCcc--HHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567          157 SKVTNDPCNSPFVSKSELRL--IQAGKSDSVKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN  232 (339)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  232 (339)
                      +..||+|++.+..++++.+.  .++.+++++++....+  .++.+++|+++...+..++.....+....++|.|+++.+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  284 (451)
T 1pw4_A          205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  284 (451)
T ss_dssp             HHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             hhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77788776543222111100  0000000111111112  4778899999999999999999999999999999999889


Q ss_pred             CccchhhHhhHHhHHHHHHHHhhhhhhhHHH--HHhccchHHHHHHHHHHHhhhhhhHhhhhhccc--chhHHHHHHHHH
Q 019567          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL--IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIA  308 (339)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  308 (339)
                      +++.+.+.+.....++.+++.++.|++.||+  ++|        +.......+...++.+++...+  +.+.......+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  356 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence            9999999999999999999999999999998  654        2333333333335555555543  333333333333


Q ss_pred             HHHhhhcccchhhhhh--hcccchhhhhhhhc
Q 019567          309 LSLSSFSQAGYLLNIQ--IAQDFSTALQIQQE  338 (339)
Q Consensus       309 ~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q~  338 (339)
                      ....+...+.......  ..++++|+.+|..+
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  388 (451)
T 1pw4_A          357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTG  388 (451)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence            2333333333334444  44567888887653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=3.2e-35  Score=264.28  Aligned_cols=311  Identities=12%  Similarity=0.071  Sum_probs=245.5

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA   80 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~   80 (339)
                      ++..|.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.+ ..++|++.++++|+
T Consensus        46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  125 (438)
T 3o7q_A           46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF  125 (438)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999988722 23799999999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh-hhcc-----------------------
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIG-----------------------  136 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~-----------------------  136 (339)
                      ++|++.+...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+. +..+                       
T Consensus       126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (438)
T 3o7q_A          126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV  205 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999999988 5544                       


Q ss_pred             --chHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhH
Q 019567          137 --ISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN  213 (339)
Q Consensus       137 --w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (339)
                        ||+.|++.+++.++..+..++. .||++++++++              +++++...++++++|+|+++...+..++..
T Consensus       206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T 3o7q_A          206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV  271 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--------------ccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence              9999988887776655544432 23333221110              011222246788999999999999989888


Q ss_pred             HHHHHHHHhhhhh-hhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567          214 WGYFVLLSWMPIY-FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL  292 (339)
Q Consensus       214 ~~~~~~~~~~~~~-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (339)
                      ........++|.| +++.+|+++.+++.......++.++++++.|++.||+++|         +.+..+.++..++.++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~  342 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLIS  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHH
Confidence            8889999999999 8888899999999999999999999999999999999865         45556666666666666


Q ss_pred             hcccchhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhhhh
Q 019567          293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQIQ  336 (339)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~  336 (339)
                      ...++.+..... .+...+.+...+....... ..|++++...+.
T Consensus       343 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
T 3o7q_A          343 AFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSF  386 (438)
T ss_dssp             HHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHH
T ss_pred             HHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhH
Confidence            666555443333 3333334444444444434 445556655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=1e-35  Score=262.29  Aligned_cols=309  Identities=13%  Similarity=0.121  Sum_probs=247.7

Q ss_pred             CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567            2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF   81 (339)
Q Consensus         2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l   81 (339)
                      ++.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++.  ..++|++.+++.|++
T Consensus        20 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l   97 (375)
T 2gfp_A           20 IPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--VTTSSLTVLIAASAM   97 (375)
T ss_dssp             HHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999999999  558999999999999


Q ss_pred             HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567           82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN  161 (339)
Q Consensus        82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~  161 (339)
                      +|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+..+||+.|++.++..++..+......||
T Consensus        98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (375)
T 2gfp_A           98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE  177 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred             HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            99999999999999999999999999999999999999999999999999998999999999888887766655556666


Q ss_pred             CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567          162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF  241 (339)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  241 (339)
                      +++++++                 +++...++++++|+|+++...+..++..........+.|.|+++.+|.++.+.+.+
T Consensus       178 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  240 (375)
T 2gfp_A          178 TRPVDAP-----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL  240 (375)
T ss_dssp             CSTTTCC-----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred             cCCCCcc-----------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            6543221                 11223356788899999999998898888999999999999999889999999999


Q ss_pred             hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHh-hhhhhHhhhhhc--ccchhHHHHHHHHHHHHhhhcccc
Q 019567          242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF-IGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAG  318 (339)
Q Consensus       242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  318 (339)
                      .....++.++++++.+++.||.+++         ....... ............  .++.+.......+.....+...+.
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          241 FILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             HHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999998753         1111111 111122112221  113333333334444455555666


Q ss_pred             hhhhhh-hcccchhhhhhhhc
Q 019567          319 YLLNIQ-IAQDFSTALQIQQE  338 (339)
Q Consensus       319 ~~~~~~-~~p~~~g~~~g~q~  338 (339)
                      ...... ..|+++|+.+|..+
T Consensus       312 ~~~~~~~~~p~~~g~~~g~~~  332 (375)
T 2gfp_A          312 ATSGAMEPFPFLAGTAGALVG  332 (375)
T ss_dssp             THHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcccchHHHHHH
Confidence            666666 66788998887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=5.2e-31  Score=240.35  Aligned_cols=320  Identities=14%  Similarity=0.119  Sum_probs=220.8

Q ss_pred             hCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcch
Q 019567           12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM   90 (339)
Q Consensus        12 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~   90 (339)
                      +|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++  +.++|++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL--ALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH--HSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999 899999999999999999999  668999999999999999999999


Q ss_pred             hhhHHHHhhhCCcch--hhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCC--
Q 019567           91 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS--  166 (339)
Q Consensus        91 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--  166 (339)
                      +...+++.|++|+++  |++++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+......|+..+++  
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL  206 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence            999999999999888  7788888999999999999999999999999999999988777665555544433322211  


Q ss_pred             --CC-CChHHHHH-HHh------------------CCcccc---------------------ccCCCccHHHHhcchhHH
Q 019567          167 --PF-VSKSELRL-IQA------------------GKSDSV---------------------KKRNPPSLRHLLSKLPSW  203 (339)
Q Consensus       167 --~~-~~~~~~~~-~~~------------------~~~~~~---------------------~~~~~~~~~~~~~~~~~~  203 (339)
                        +. .++++.+. .+.                  +..+.+                     .++...+..+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (491)
T 4aps_A          207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI  286 (491)
T ss_dssp             CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred             CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence              11 11111111 000                  000000                     000011111111222344


Q ss_pred             HHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhh
Q 019567          204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI  283 (339)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  283 (339)
                      ...+..++....+.....++|.|.++..+.+..+.+.......+..+++.++.+++.||++||+...    ...+..+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~  362 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM  362 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence            4444555555556666678888998877888778888889999999999999999999998773211    122334555


Q ss_pred             hhhhHhhhhhcc---------cchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567          284 GPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       284 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      +.+++..++...         .+.+.......+.....+...+.......  ..++++|..+|..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  427 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW  427 (491)
T ss_dssp             HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence            555554444331         13333333333333334444444555555  4456688877754

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=2.3e-29  Score=229.40  Aligned_cols=263  Identities=17%  Similarity=0.158  Sum_probs=190.7

Q ss_pred             CcchhhhHhHhCCC--------ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh------
Q 019567            2 SVAVVPLAAKFGWS--------SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------   67 (339)
Q Consensus         2 ~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~------   67 (339)
                      +..+|.++++++.+        +.+.|++.+++.+|..++++++|+++||+|||+++.++.+++.++++++++.      
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~  111 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS  111 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45678888887532        3467899999999999999999999999999999999999999999998421      


Q ss_pred             ----------hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh---
Q 019567           68 ----------ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST---  134 (339)
Q Consensus        68 ----------~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~---  134 (339)
                                .++|++.++++|+++|+|.|...+....+++|+.|+++|++..++.+.+...|..+++.++..+...   
T Consensus       112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  191 (491)
T 4gc0_A          112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA  191 (491)
T ss_dssp             SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence                      4789999999999999999999999999999999999999999999999999999999888776543   


Q ss_pred             -----ccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHH--HHHhC-------------CccccccCCCccHH
Q 019567          135 -----IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELR--LIQAG-------------KSDSVKKRNPPSLR  194 (339)
Q Consensus       135 -----~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~~  194 (339)
                           .+||..+.+..+..++. +...+..||+|++...+.++++.  ..++.             +++.+++++.....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (491)
T 4gc0_A          192 SWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRL  270 (491)
T ss_dssp             TTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHH
Confidence                 34777777766655554 44455679998753222111111  00000             00000011111222


Q ss_pred             HHhcchhHHHHHHHH-HhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567          195 HLLSKLPSWTVIIAN-ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA  266 (339)
Q Consensus       195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  266 (339)
                      ..++.++........ +......+....+.|.+.++ .+.+..+........++...++.++.+++.||+|||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr  342 (491)
T 4gc0_A          271 LMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK  342 (491)
T ss_dssp             HHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred             HHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            333444444433333 33444456666677766665 577777777777788888999999999999999986

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=1.3e-27  Score=213.31  Aligned_cols=315  Identities=15%  Similarity=0.078  Sum_probs=197.4

Q ss_pred             cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHh-hhhhcch-hHHHHHH
Q 019567            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAATHST-ASLLAVR   79 (339)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~r   79 (339)
                      +.+|. +++++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++..... ....+.. ..+...+
T Consensus        28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T 2cfq_A           28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS  107 (417)
T ss_dssp             TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455 5677999999999999999999999999999999999999999998877755321110 0112211 1234556


Q ss_pred             HHHHhhhhcchhhhHHHHhhhCCc--chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567           80 AFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS  157 (339)
Q Consensus        80 ~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  157 (339)
                      .+.|++.+...+.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+..+.
T Consensus       108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~  186 (417)
T 2cfq_A          108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCS
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHH
Confidence            666666655555555555555543  456777888888899999999999999887 58999999877665444443333


Q ss_pred             hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCC---c
Q 019567          158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV---N  234 (339)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---~  234 (339)
                      ..||++++.+..++         +++++++....++++++++|+++...+..+.....+....+++|.|+++.++.   +
T Consensus       187 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (417)
T 2cfq_A          187 AKTDAPSSATVANA---------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG  257 (417)
T ss_dssp             SCCCCSCSSCSSSS---------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred             cCcccccccccccc---------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            33333221100000         00001111123456788999988777666655556666667788888775442   2


Q ss_pred             cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhh
Q 019567          235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF  314 (339)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (339)
                      ....+.......++.+++.++.+++.||+++|         +.+..+..+.++....+...++.+.......+.......
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  328 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34456777777778889999999999999875         444456666666665555555544332222222222222


Q ss_pred             cccchhhhhh--hcccchhhhhhh
Q 019567          315 SQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       315 ~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      ..........  ..++.+|+.++.
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~  352 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHH
Confidence            2222333333  344667776554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.93  E-value=5.1e-25  Score=202.37  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=136.0

Q ss_pred             hhhHhHhC------CCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhhc-chhHHHH
Q 019567            6 VPLAAKFG------WSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATH-STASLLA   77 (339)
Q Consensus         6 ~~i~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~   77 (339)
                      +.+++++|      .|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.+++  +.++ |++.+++
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  114 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL--AIFEHSVQGFYT  114 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH--HHTSSCHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHhcccHHHHHH
Confidence            45678899      9999999999999999999999999999999 99999999999999999998  5578 9999999


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHH---HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGI---CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST  154 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~  154 (339)
                      .|++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+..|||+.|++.++..++..+.
T Consensus       115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876666   999999999999999999999899999999988877665555


Q ss_pred             HHh
Q 019567          155 WTS  157 (339)
Q Consensus       155 ~~~  157 (339)
                      .+.
T Consensus       195 ~~~  197 (524)
T 2xut_A          195 FWL  197 (524)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.57  E-value=2.1e-14  Score=128.99  Aligned_cols=154  Identities=11%  Similarity=0.036  Sum_probs=131.5

Q ss_pred             hhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHHHHHHHHHH-HHHHHHhhhhhcchhHHHHHHH
Q 019567            5 VVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAWGVALWS-LSTLLTPWAATHSTASLLAVRA   80 (339)
Q Consensus         5 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~   80 (339)
                      .|.+.++ +|.++.+.+++.+...++..++.++.|++.||+  |||+.+..+..+.. ++.++..+...++.+.+.+..+
T Consensus       275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (451)
T 1pw4_A          275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  354 (451)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence            3444445 899999999999999999999999999999999  99999988877766 5665552211247778888889


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK  158 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~  158 (339)
                      +.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..+..+..
T Consensus       355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888899999999999999999999999999 999999999999999999999999888877766655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.53  E-value=6.9e-14  Score=124.53  Aligned_cols=147  Identities=12%  Similarity=0.098  Sum_probs=123.6

Q ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHH
Q 019567           16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST   95 (339)
Q Consensus        16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~   95 (339)
                      ..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+..  ...++.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--SFATSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--TTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788888888889999999999999999999999888888877666  44678888888888888887777777889


Q ss_pred             HHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567           96 LTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC  164 (339)
Q Consensus        96 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  164 (339)
                      ++.|.+|++.|+++.+. ++....+|..++|.+++.+.+..|++..|.+.++++++..+..+...||+++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999999999999998 4888889999999999999998899999999888887776666655555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=2.8e-12  Score=114.62  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=117.3

Q ss_pred             hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhh
Q 019567            8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG   87 (339)
Q Consensus         8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~   87 (339)
                      +++.+|.++.+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++.++.  ...++.+.++. -++.|++.+
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~  362 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS--AFAGGHVGLIA-LTLCSAFMS  362 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHH-HHHHHHHHT
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHcCCcHHHHH-HHHHHHHHH
Confidence            344469999999999999999999999999999999999999999999998888877  44666655444 488899999


Q ss_pred             cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHH
Q 019567           88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLL  150 (339)
Q Consensus        88 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~  150 (339)
                      ...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++
T Consensus       363 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          363 IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999999855 888888877 566999999999999999998 99999876555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.39  E-value=2.5e-11  Score=110.18  Aligned_cols=161  Identities=17%  Similarity=0.085  Sum_probs=121.0

Q ss_pred             hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc--chhHHHHHHHHH
Q 019567            5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH--STASLLAVRAFF   82 (339)
Q Consensus         5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~   82 (339)
                      .|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.....  +....++.-++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  379 (491)
T 4gc0_A          300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY  379 (491)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            356677788887777777788888899999999999999999999999988888777665332221  112222222222


Q ss_pred             Hhhh-hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh------hccchHHHHHHHHHHHHHHHHH
Q 019567           83 GLAE-GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        83 G~g~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      ..+. ....+....+.+|.+|.+.|++++|+......+|..+++.+...+.+      ..++...|++.++++++..+..
T Consensus       380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            2221 22346778899999999999999999999999999998887766543      3567788999999999988888


Q ss_pred             HhhccCCCCC
Q 019567          156 TSKVTNDPCN  165 (339)
Q Consensus       156 ~~~~~~~~~~  165 (339)
                      +++.||++.+
T Consensus       460 ~~~~PETkg~  469 (491)
T 4gc0_A          460 WKFVPETKGK  469 (491)
T ss_dssp             HHHCCCCTTC
T ss_pred             HheecCCCCC
Confidence            8899998754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.36  E-value=2.4e-12  Score=116.92  Aligned_cols=154  Identities=14%  Similarity=0.028  Sum_probs=120.9

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHH-----HHHHHHHHHHHHHhhhh-------hcchhHHH
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLA-----WGVALWSLSTLLTPWAA-------THSTASLL   76 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~   76 (339)
                      ++.++.+..+.++..+...++..++.++.+++.||+|||+...     .+.++.+++.++..+..       ..+.+.+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (491)
T 4aps_A          311 AERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLV  390 (491)
T ss_dssp             HHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHH
T ss_pred             HHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHH
Confidence            3446777678899999999999999999999999999987655     67777777666653211       12677888


Q ss_pred             HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567           77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT  156 (339)
Q Consensus        77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  156 (339)
                      +.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+ .++...|.+.+..+++..+..+
T Consensus       391 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  469 (491)
T 4aps_A          391 GSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLV  469 (491)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999899999999999999999999999999999999999999887765 4677888888888777766666


Q ss_pred             hhccCCC
Q 019567          157 SKVTNDP  163 (339)
Q Consensus       157 ~~~~~~~  163 (339)
                      ...++.+
T Consensus       470 ~~~~~~~  476 (491)
T 4aps_A          470 FLSKRIQ  476 (491)
T ss_dssp             HC-----
T ss_pred             HHHHHHH
Confidence            6555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.97  E-value=1.9e-10  Score=100.64  Aligned_cols=134  Identities=19%  Similarity=0.154  Sum_probs=107.0

Q ss_pred             HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHH-HHHHHH--HHhhhhhcchhHHHHHHHHHHhh
Q 019567            9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVAL-WSLSTL--LTPWAATHSTASLLAVRAFFGLA   85 (339)
Q Consensus         9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~r~l~G~g   85 (339)
                      ++++|.|+.+.+++.+...++..++.++.+++.||+++|.  ..+..+ ...+..  .......++.+.+++..++.|++
T Consensus       227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  304 (375)
T 2gfp_A          227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG  304 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence            4458899999999999999999999999999999998832  233322 222222  11111124677788889999999


Q ss_pred             hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHH
Q 019567           86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFS  145 (339)
Q Consensus        86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~  145 (339)
                      .+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999997 899999999999999999999999999988878888877643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.97  E-value=1.5e-09  Score=99.32  Aligned_cols=146  Identities=12%  Similarity=0.065  Sum_probs=102.0

Q ss_pred             chhHHHHHHHHHHHHHHhhhHHHh----hhhcc----hHHHHHHHHHHHHHHHHHhhhh-------hcchhHHHHHHHHH
Q 019567           18 FLGIVQSSFLWGYIFSSVIGGALV----DKYGG----KKVLAWGVALWSLSTLLTPWAA-------THSTASLLAVRAFF   82 (339)
Q Consensus        18 ~~g~~~s~~~~~~~i~~~~~g~l~----dr~G~----r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~l~   82 (339)
                      ..+++.+...++..+..++.+++.    ||.|+    ++.+..+.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666667777777777764    55543    3566777777777776663211       13677788889999


Q ss_pred             HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cc---------hHHHHHHHHHHHHH
Q 019567           83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GI---------SGPFILFSSLGLLW  151 (339)
Q Consensus        83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--~w---------~~~f~~~~~~~~~~  151 (339)
                      |++.+...+....++.|..|+++|++++|+.+....+|..++|.+.+.+.+..  +|         +..|++.+.++++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887632  23         33477777776666


Q ss_pred             HHHHHhhccCCC
Q 019567          152 LSTWTSKVTNDP  163 (339)
Q Consensus       152 ~~~~~~~~~~~~  163 (339)
                      .+..++..++.+
T Consensus       496 ~~~~~~~~~~~~  507 (524)
T 2xut_A          496 AIVFALYARSYQ  507 (524)
T ss_dssp             HHHHC-------
T ss_pred             HHHHHHHHHHhc
Confidence            655555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	339
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-17
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 79.3 bits (194), Expect = 6e-17
 Identities = 54/327 (16%), Positives = 112/327 (34%), Gaps = 11/327 (3%)

Query: 5   VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLT 64
            +P   + G+S   LG   S     Y FS  I G++ D+   +  L  G+ L +   L  
Sbjct: 47  AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 106

Query: 65  PW--AATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
            +   AT S A +  +    G  +G+  P        W+   ER   + +     ++G  
Sbjct: 107 GFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 166

Query: 123 VGLLLTPIMLSTIGISGPFILFSS-----LGLLWLSTWTSKVTNDPCNSPFVSKSELRLI 177
           +  LL  + ++        +   +     + L   +       +         K++    
Sbjct: 167 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD 226

Query: 178 QAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQ 237
              K++         ++++L     W + IAN+      + +L W P Y   V +  L +
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286

Query: 238 AAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKS 297
           ++W   +          + G  SD + +     T     +  +  +     +  +N A +
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGN 342

Query: 298 PAVAAVLITIALSLSSFSQAGYLLNIQ 324
           P V  + + +   L         L+  
Sbjct: 343 PTVDMICMIVIGFLIYGPVMLIGLHAL 369

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 34/312 (10%), Positives = 72/312 (23%), Gaps = 4/312 (1%)

Query: 1   MSVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLS 60
                + L      S S  GI+ ++     +    + G L DK G +K L W +    + 
Sbjct: 27  FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86

Query: 61  TLL----TPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGG 116
                             + ++     L       A +        S       G     
Sbjct: 87  FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMF 146

Query: 117 FHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELRL 176
             +G  +G  +  IM +       ++      +L +  + +K       +   +      
Sbjct: 147 GCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206

Query: 177 IQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLK 236
             + K      R P      L  +               +F            VF     
Sbjct: 207 AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTT 266

Query: 237 QAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK 296
                +A       +     G  +  L+        +     +   +   +      +  
Sbjct: 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV 326

Query: 297 SPAVAAVLITIA 308
              +      I 
Sbjct: 327 PFLLVGCFKYIT 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	339
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.58
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-34  Score=255.57  Aligned_cols=328  Identities=16%  Similarity=0.179  Sum_probs=243.2

Q ss_pred             cchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh--hhcchhHHHHHHH
Q 019567            3 VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA--ATHSTASLLAVRA   80 (339)
Q Consensus         3 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~   80 (339)
                      ++.|.++ |+|+|++|.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++  ..++++.+++.|+
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  124 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence            4456665 689999999999999999999999999999999999999999999999999888442  1358899999999


Q ss_pred             HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh-ccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST-IGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~-~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      +.|++.+...+...+++.|++|+|+|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+.+.++..++.+...
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998877665 4799999999998888888888887


Q ss_pred             cCCCCCCCCCChHHHHH----HHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCcc
Q 019567          160 TNDPCNSPFVSKSELRL----IQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNL  235 (339)
Q Consensus       160 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  235 (339)
                      ++.|++.+....++.+.    ...++.+++....+...++.+++|.++......++.....+....+.|.|+++.++.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (447)
T d1pw4a_         205 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL  284 (447)
T ss_dssp             CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred             ccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccccccccc
Confidence            77776544332222111    01111111222233346678889999999998999999999999999999999999999


Q ss_pred             chhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcc--cchhHHHHHHHHHHHHhh
Q 019567          236 KQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA--KSPAVAAVLITIALSLSS  313 (339)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  313 (339)
                      .+.+.......+..+++.++.|++.||.++++      +.........+...+.......  .+.+.......+..+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  358 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN------RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY  358 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC------HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhhccccc------cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763      1222222222223333333322  233333333333333333


Q ss_pred             hcccchhhhhh--hcccchhhhhhhh
Q 019567          314 FSQAGYLLNIQ--IAQDFSTALQIQQ  337 (339)
Q Consensus       314 ~~~~~~~~~~~--~~p~~~g~~~g~q  337 (339)
                      ...+.......  ..++.+|+..|..
T Consensus       359 ~~~~~~~~~~~~~~p~~~~g~~~g~~  384 (447)
T d1pw4a_         359 GPVMLIGLHALELAPKKAAGTAAGFT  384 (447)
T ss_dssp             HHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            33333333334  4456678877754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-23  Score=184.21  Aligned_cols=313  Identities=15%  Similarity=0.053  Sum_probs=207.5

Q ss_pred             cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchh----HHHH
Q 019567            3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTA----SLLA   77 (339)
Q Consensus         3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~   77 (339)
                      +.+|. +++++|+|++++|++.+++.++..+++++.|+++||+|||++++.+..+..++..+.  ....+..    ..+.
T Consensus        28 ~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  105 (417)
T d1pv7a_          28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF--FIFIFGPLLQYNILV  105 (417)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH--HHHTHHHHHHTTCHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHH
Confidence            34554 678899999999999999999999999999999999999999999999888888877  3344433    3345


Q ss_pred             HHHHHHhhhhcchhhhHHHHhhhCCc--chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHH
Q 019567           78 VRAFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTW  155 (339)
Q Consensus        78 ~r~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~  155 (339)
                      .+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+. +|+..+........+..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~  184 (417)
T d1pv7a_         106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHH
Confidence            56666666555555555554444433  3455677788888899999999999888764 56666666666666666666


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhh---hhhhC
Q 019567          156 TSKVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYF---NTVFN  232 (339)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~g  232 (339)
                      .+..+|++++.+..++++.+         +++.......+..+++..+....................+.+.   .+..+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (417)
T d1pv7a_         185 FFAKTDAPSSATVANAVGAN---------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE  255 (417)
T ss_dssp             HSSCCCSCSSSCSSHHHHSC---------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHH
T ss_pred             HHHhcccccchhhhhhhhhh---------cccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccc
Confidence            66666666554433222211         1112222334444455444443333333333333333322222   22234


Q ss_pred             CccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHh
Q 019567          233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLS  312 (339)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (339)
                      .+....+.......++..++..+.+++.||.+++         ..+..+..+.+++.+.+...++.+.......+.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  326 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEV  326 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccccccccccccchhhhhhhhcccccc---------cchhhhHHHHHHhhhccccccccchhhHHHHHHHHHH
Confidence            4556667777778888889999999999998865         5666777777777788887777776666665555555


Q ss_pred             hhcccchhhhhh--hcccchhhhhhh
Q 019567          313 SFSQAGYLLNIQ--IAQDFSTALQIQ  336 (339)
Q Consensus       313 ~~~~~~~~~~~~--~~p~~~g~~~g~  336 (339)
                      +...+.......  ..++++|+..+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLV  352 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHH
Confidence            666666666556  555778887764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.3e-15  Score=127.80  Aligned_cols=147  Identities=12%  Similarity=0.134  Sum_probs=130.8

Q ss_pred             CccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhH
Q 019567           15 SSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMS   94 (339)
Q Consensus        15 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~   94 (339)
                      +....+...+...++..++..+.+++.||+|+|+.+..+.++.+++.+..  ...++.+.+++..++.|++.+...+...
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~  334 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--SFATSALEVVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcc--ccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            45566778888889999999999999999999999999999999998888  5589999999999999999999999999


Q ss_pred             HHHhhhCCcchhhHHHHHH-HHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCC
Q 019567           95 TLTSRWFPSHERASAIGIC-MGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDP  163 (339)
Q Consensus        95 ~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  163 (339)
                      +++.|.+|+++|++..+.. +....+|..++|.+.+++.|..||+..|++.+++.++..++..+..++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999975 56678999999999999999999999999999888887777666655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=7.3e-13  Score=116.33  Aligned_cols=153  Identities=14%  Similarity=0.045  Sum_probs=120.4

Q ss_pred             hhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHH---HHHHHhhhhhcchhHHHHHHHHHH
Q 019567            7 PLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSL---STLLTPWAATHSTASLLAVRAFFG   83 (339)
Q Consensus         7 ~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~l~G   83 (339)
                      .+.++++.+..+.++..+...++..++.++.|++.||++||+..........+   +.........++.+...+.-++.|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  354 (447)
T d1pw4a_         275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG  354 (447)
T ss_dssp             HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred             hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            35566889999999999999999999999999999999987644443333322   222221123456777788888899


Q ss_pred             hhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhc
Q 019567           84 LAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKV  159 (339)
Q Consensus        84 ~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~  159 (339)
                      ++.+...+....+..|.+|+++|+++.|+.+....+ |.+++|.+.+.+.+..||+..|++.+...++..++.....
T Consensus       355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888889999999999999999999999887776 5677899999999999999999988777776655555443