Citrus Sinensis ID: 019594

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Secondary Structure (PSIPRED)
cccccccccEEEcccEEEEEEccccccccccccccEEEEEEEEEccEEEEEEEccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcEEEcccEEEEEEccccccccccHccccEEEEEHHcccEEEEEEEccccccccccHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
MKYLLYEVPVRVAGGLLFELLgqsagdpfvdeddipiVLRSWQAQNFLITALHvkgpvssnnvlgiTEVQELLFvggynvprTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFvnrrnledmNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLfginvdgipgadntpyaFGLFTAILFFIGVVLIAVGLLYlglkkpiteEQVEVRKLELQELVKKFQHEAETHAQVRKNVRnnltptagdiisdadYILIQ
Flexible Loop (DISEMBL)
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLAcrlsrwddRLFRKTIfgaadeielkfvnrrnledmNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAEthaqvrknvrnnltptagdiisdadYILIQ
Low Complexity Region (SEG)
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Disordered region (IsUnstruct)
**YLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQH**************NLTPTAGDIISDADYIL**
Disordered Region (DISOPRED)
**YLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDM*LFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI***********LQELVKK**************************ISDADYILIQ
Disordered Region (DISEMBL)
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Disordered Region (DISPRO)
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELVKKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
255557421	570	conserved hypothetical protein [Ricinus	1.0	0.592	0.867	1e-168
224116742	470	predicted protein [Populus trichocarpa]	1.0	0.719	0.852	1e-165
297845904	540	hypothetical protein ARALYDRAFT_473189 [	0.988	0.618	0.816	1e-163
356555837	555	PREDICTED: uncharacterized protein LOC10	1.0	0.609	0.838	1e-163
186479044	540	Magnesium transporter CorA-like family p	0.988	0.618	0.810	1e-162
357448349	542	hypothetical protein MTR_2g028770 [Medic	1.0	0.623	0.818	1e-158
449459338	551	PREDICTED: uncharacterized protein LOC10	1.0	0.613	0.776	1e-155
359483826	570	PREDICTED: uncharacterized protein LOC10	1.0	0.592	0.841	1e-154
297740638	534	unnamed protein product [Vitis vinifera]	1.0	0.632	0.841	1e-154
238478681	568	Magnesium transporter CorA-like family p	0.988	0.588	0.745	1e-149

>gi|255557421|ref|XP_002519741.1| conserved hypothetical protein [Ricinus communis] gi|223541158|gb|EEF42714.1| conserved hypothetical protein [Ricinus communis]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/340 (86%), Positives = 317/340 (93%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MK+LLYEVPVRVAGGLLFELLGQSAGDPFV+EDDIPIVLRSWQAQNFLIT+LH+KG VS 
Sbjct: 231 MKHLLYEVPVRVAGGLLFELLGQSAGDPFVEEDDIPIVLRSWQAQNFLITSLHIKGNVSR 290

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEV ELL  GGYN PRTVHEVIA LACRL+RWDDRLFRK+IFGAADEIELKF+N
Sbjct: 291 VNVLGITEVLELLSGGGYNTPRTVHEVIALLACRLTRWDDRLFRKSIFGAADEIELKFMN 350

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN EDMNLF++ILNQEIRRLSRQVIRVKWSLHAREEIVFEL  HLRGN AR LLE IRK
Sbjct: 351 RRNHEDMNLFSVILNQEIRRLSRQVIRVKWSLHAREEIVFELLHHLRGNAARILLEEIRK 410

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           + REM+EEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFG
Sbjct: 411 STREMMEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFG 470

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA+NTPYAFG+FTAIL FIGVVLIAVGLLYLGLK+PITE++VEVRKLELQELV
Sbjct: 471 INVDGIPGAENTPYAFGVFTAILLFIGVVLIAVGLLYLGLKQPITEKRVEVRKLELQELV 530

Query: 301 KKFQHEAETHAQVRKNV-RNNLTPTAGD-IISDADYILIQ 338
           K FQHEAETHAQVRKNV R NLTPT+GD +  D DY+LIQ
Sbjct: 531 KMFQHEAETHAQVRKNVHRTNLTPTSGDGLTDDVDYVLIQ 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116742|ref|XP_002331866.1| predicted protein [Populus trichocarpa] gi|222875384|gb|EEF12515.1| predicted protein [Populus trichocarpa]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/340 (85%), Positives = 312/340 (91%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MK+LLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP+VLRSW AQNFLITALH+KG VS 
Sbjct: 131 MKHLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPVVLRSWHAQNFLITALHIKGHVSR 190

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEVQELLF+GG N P+TVHEVIA LA R+SRWDDRLFRK+IFG ADEIELKFVN
Sbjct: 191 VNVLGITEVQELLFLGGCNGPKTVHEVIAQLASRMSRWDDRLFRKSIFGEADEIELKFVN 250

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN EDM+LF+IILNQEIRRLSRQVIRVKWSLHAREEIVFEL  HLRGN AR LLE IRK
Sbjct: 251 RRNYEDMSLFSIILNQEIRRLSRQVIRVKWSLHAREEIVFELLHHLRGNAARMLLEEIRK 310

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           + R+MIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFG
Sbjct: 311 STRQMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFG 370

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDG+PGA  TPYAF LFT IL F+G+VLIAVGLLYLGLKKP+TEEQV+V+KLELQELV
Sbjct: 371 INVDGMPGASGTPYAFALFTGILLFVGLVLIAVGLLYLGLKKPVTEEQVQVKKLELQELV 430

Query: 301 KKFQHEAETHAQVRKNV-RNNLTPTAGDIIS-DADYILIQ 338
           K FQHEAETHAQVRK V RNNL PT+GDI S D DY+LIQ
Sbjct: 431 KMFQHEAETHAQVRKTVRRNNLPPTSGDIFSDDVDYVLIQ 470

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845904|ref|XP_002890833.1| hypothetical protein ARALYDRAFT_473189 [Arabidopsis lyrata subsp. lyrata] gi|297336675|gb|EFH67092.1| hypothetical protein ARALYDRAFT_473189 [Arabidopsis lyrata subsp. lyrata]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/338 (81%), Positives = 312/338 (92%), Gaps = 4/338 (1%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           M++LLYEVPVRVAGGLLFELLGQS GDP + EDD+P+V RSWQA+NFL++ +H+KG V+S
Sbjct: 207 MRHLLYEVPVRVAGGLLFELLGQSVGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTS 266

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEV+ELL+ GGYNVPRTVHEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct: 267 TNVLGITEVEELLYAGGYNVPRTVHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMN 326

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN ED+NLF+IILNQEIR+LSRQVIRVKWSLHAREEI+FEL QHLRGN AR LLEG+RK
Sbjct: 327 RRNYEDLNLFSIILNQEIRKLSRQVIRVKWSLHAREEIIFELLQHLRGNTARHLLEGLRK 386

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           N REM+EEQEAVRGRLFTIQDVMQS+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFG
Sbjct: 387 NTREMLEEQEAVRGRLFTIQDVMQSSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFG 446

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA NTPYAFGLFT ++  +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++V
Sbjct: 447 INVDGIPGAQNTPYAFGLFTVLMVLLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVV 506

Query: 301 KKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ 338
           K FQHEAETHAQ+R   RNNL+PTAGD+  DADYILIQ
Sbjct: 507 KIFQHEAETHAQLR---RNNLSPTAGDVF-DADYILIQ 540

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555837|ref|XP_003546236.1| PREDICTED: uncharacterized protein LOC100796976 [Glycine max]

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/340 (83%), Positives = 312/340 (91%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MK+LLYEVPVRVAGGLLFELLGQSAGDP V+EDDIPIVLRSWQ+QNFL+T +H+KG VS 
Sbjct: 216 MKHLLYEVPVRVAGGLLFELLGQSAGDPLVEEDDIPIVLRSWQSQNFLVTVMHIKGSVSR 275

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEVQELL  GGYN+PRTVHEVIA LACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct: 276 INVLGITEVQELLSAGGYNMPRTVHEVIALLACRLSRWDDRLFRKSIFGAADEIELKFMN 335

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN ED+NLF +ILNQEIR+LS QVIRVKWSLHAR+EIVFEL QHL+GN ARTLLEGI+K
Sbjct: 336 RRNHEDLNLFILILNQEIRKLSTQVIRVKWSLHARDEIVFELLQHLKGNGARTLLEGIKK 395

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           + REMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGG GVVLT+ITGLFG
Sbjct: 396 STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITGLFG 455

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA+ TPYAFG+FTAIL  +GVVLIAVG++YLGLK P+ EEQVEVRKLELQELV
Sbjct: 456 INVDGIPGAEQTPYAFGVFTAILVVLGVVLIAVGMVYLGLKNPVVEEQVEVRKLELQELV 515

Query: 301 KKFQHEAETHAQVRKNVR-NNLTPTAGDII-SDADYILIQ 338
           K FQHEAETHAQ+RKN+   NL PTAGD   SDADY++IQ
Sbjct: 516 KMFQHEAETHAQMRKNISPKNLPPTAGDAFRSDADYLVIQ 555

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186479044|ref|NP_174275.2| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|186479046|ref|NP_001117384.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193013|gb|AEE31134.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193014|gb|AEE31135.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/338 (81%), Positives = 313/338 (92%), Gaps = 4/338 (1%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           M++LLYEVPVRVAGGLLFELLGQS GDP + EDD+P+V RSWQA+NFL++ +H+KG V++
Sbjct: 207 MRHLLYEVPVRVAGGLLFELLGQSVGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTN 266

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEV+ELL+ GGYNVPRTVHEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct: 267 TNVLGITEVEELLYAGGYNVPRTVHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMN 326

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN ED+NLF+IILNQEIR+LSRQVIRVKWSLHAREEI+FEL QHLRGN+AR LL+G+RK
Sbjct: 327 RRNYEDLNLFSIILNQEIRKLSRQVIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRK 386

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           N REM+EEQEAVRGRLFTIQDVMQS+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFG
Sbjct: 387 NTREMLEEQEAVRGRLFTIQDVMQSSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFG 446

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA NTPYAFGLFT ++  +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++V
Sbjct: 447 INVDGIPGAQNTPYAFGLFTFLMVLLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVV 506

Query: 301 KKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ 338
           K FQHEAETHAQ+R   RNNL+PTAGD+  DADYILIQ
Sbjct: 507 KIFQHEAETHAQLR---RNNLSPTAGDVF-DADYILIQ 540

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448349|ref|XP_003594450.1| hypothetical protein MTR_2g028770 [Medicago truncatula] gi|355483498|gb|AES64701.1| hypothetical protein MTR_2g028770 [Medicago truncatula]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/342 (81%), Positives = 300/342 (87%), Gaps = 4/342 (1%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MK+LLYEVPVRVAGGLLFELLGQS GDP VDEDDIPIVLRSWQAQNFL+T +H+KGPVS 
Sbjct: 201 MKHLLYEVPVRVAGGLLFELLGQSVGDPHVDEDDIPIVLRSWQAQNFLVTVIHIKGPVSK 260

Query: 61  NNVLGITEVQ---ELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELK 117
            NVLGITEVQ   ELL  GGYNVPRT HEVIA LA RLSRWDDRLFRK+IFG ADEIELK
Sbjct: 261 INVLGITEVQVVLELLSTGGYNVPRTAHEVIAQLASRLSRWDDRLFRKSIFGTADEIELK 320

Query: 118 FVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEG 177
           F+NRR  ED+N F IILNQEIR+LS QVIRVKWSLHAR+EIVFEL QHL+GN AR LLEG
Sbjct: 321 FMNRRTHEDLNFFNIILNQEIRKLSAQVIRVKWSLHARDEIVFELLQHLKGNGARNLLEG 380

Query: 178 IRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITG 237
           I+K+ REMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGG GVVLT+ITG
Sbjct: 381 IKKSTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGVGVVLTIITG 440

Query: 238 LFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQ 297
           LFGINVDGIPGA NTPYAFG+FTAIL F+G VLI V L+YLGLK PI EEQVEVRKLEL 
Sbjct: 441 LFGINVDGIPGATNTPYAFGVFTAILIFLGAVLIVVCLVYLGLKTPIAEEQVEVRKLELD 500

Query: 298 ELVKKFQHEAETHAQVRKNV-RNNLTPTAGDIISDADYILIQ 338
           E VK FQH+AE HAQVRKNV RNNL PTAGD     D+++IQ
Sbjct: 501 EFVKMFQHDAENHAQVRKNVSRNNLPPTAGDAYRRGDFLVIQ 542

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459338|ref|XP_004147403.1| PREDICTED: uncharacterized protein LOC101208256 [Cucumis sativus] gi|449516982|ref|XP_004165525.1| PREDICTED: uncharacterized LOC101208256 [Cucumis sativus]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/340 (77%), Positives = 307/340 (90%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MK+L YEVPVRVAGGLLFELLGQSAGDPF DEDDIP+VLRSWQAQNFLIT+LHVKGP+S+
Sbjct: 208 MKHLFYEVPVRVAGGLLFELLGQSAGDPFSDEDDIPVVLRSWQAQNFLITSLHVKGPISN 267

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            N+LGITEVQELL +GGYN PRTVHEVIAHLACRL+RWDDRLFRK+IFGAADEIELKF++
Sbjct: 268 PNILGITEVQELLIIGGYNAPRTVHEVIAHLACRLTRWDDRLFRKSIFGAADEIELKFMD 327

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN EDM+LF+IILNQEIR+LSRQVIRVKWSLHAREEI++EL QHLRG V + LLE IRK
Sbjct: 328 RRNHEDMHLFSIILNQEIRKLSRQVIRVKWSLHAREEILYELLQHLRGYVTKGLLESIRK 387

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           + R+MIEEQEAVR RLFTIQDVMQS VRAWLQD+SLRVTHNLAVFGGCG+VL++ITGLFG
Sbjct: 388 STRQMIEEQEAVRDRLFTIQDVMQSNVRAWLQDKSLRVTHNLAVFGGCGLVLSIITGLFG 447

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA NTPYAFG+FTAILFF+G+ L+A GL+YLGLKKP+ ++ VEVRKLEL+ELV
Sbjct: 448 INVDGIPGAQNTPYAFGMFTAILFFLGIALMAGGLVYLGLKKPMPDQMVEVRKLELEELV 507

Query: 301 KKFQHEAETHAQVRK--NVRNNLTPTAGDIISDADYILIQ 338
           K FQHEAETHAQ+    N ++      G  +S++++++I+
Sbjct: 508 KMFQHEAETHAQMTSPVNGKDGAQLVDGGRLSNSNFLIIR 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483826|ref|XP_002272002.2| PREDICTED: uncharacterized protein LOC100267497 [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/340 (84%), Positives = 310/340 (91%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MKYLLYEVPVRVAGGLLFELLGQSAGDPF DEDDIPIVLRSW AQ FLITALH+KG  SS
Sbjct: 231 MKYLLYEVPVRVAGGLLFELLGQSAGDPFHDEDDIPIVLRSWHAQRFLITALHIKGTASS 290

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEVQE L  GGYN P+TVH++IA L  RLSRWDDRLFRK+IFGAADE+ELKF+N
Sbjct: 291 INVLGITEVQEALSAGGYNQPKTVHDIIALLMTRLSRWDDRLFRKSIFGAADEVELKFMN 350

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RR+ EDMNL +II NQEIRRLSRQVIRVKWSLHAREEIVFEL QHLRG+VAR+LLEGIRK
Sbjct: 351 RRHQEDMNLLSIIFNQEIRRLSRQVIRVKWSLHAREEIVFELLQHLRGDVARSLLEGIRK 410

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           N REMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFG
Sbjct: 411 NTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFG 470

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA  TPYAFGLF AIL  IG++LIA+GLLYLGLKKP++E QV+VRKLELQ+LV
Sbjct: 471 INVDGIPGASGTPYAFGLFAAILVLIGIILIALGLLYLGLKKPVSEAQVQVRKLELQQLV 530

Query: 301 KKFQHEAETHAQVRKN-VRNNLTPTAGDII-SDADYILIQ 338
           K FQHEAETHAQV K+  RNNLTPTA DII +DADY+LIQ
Sbjct: 531 KMFQHEAETHAQVSKSRPRNNLTPTAADIIPADADYVLIQ 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740638|emb|CBI30820.3| unnamed protein product [Vitis vinifera]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/340 (84%), Positives = 310/340 (91%), Gaps = 2/340 (0%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           MKYLLYEVPVRVAGGLLFELLGQSAGDPF DEDDIPIVLRSW AQ FLITALH+KG  SS
Sbjct: 195 MKYLLYEVPVRVAGGLLFELLGQSAGDPFHDEDDIPIVLRSWHAQRFLITALHIKGTASS 254

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
            NVLGITEVQE L  GGYN P+TVH++IA L  RLSRWDDRLFRK+IFGAADE+ELKF+N
Sbjct: 255 INVLGITEVQEALSAGGYNQPKTVHDIIALLMTRLSRWDDRLFRKSIFGAADEVELKFMN 314

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RR+ EDMNL +II NQEIRRLSRQVIRVKWSLHAREEIVFEL QHLRG+VAR+LLEGIRK
Sbjct: 315 RRHQEDMNLLSIIFNQEIRRLSRQVIRVKWSLHAREEIVFELLQHLRGDVARSLLEGIRK 374

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           N REMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCG+VL++ITGLFG
Sbjct: 375 NTREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFG 434

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           INVDGIPGA  TPYAFGLF AIL  IG++LIA+GLLYLGLKKP++E QV+VRKLELQ+LV
Sbjct: 435 INVDGIPGASGTPYAFGLFAAILVLIGIILIALGLLYLGLKKPVSEAQVQVRKLELQQLV 494

Query: 301 KKFQHEAETHAQVRKN-VRNNLTPTAGDII-SDADYILIQ 338
           K FQHEAETHAQV K+  RNNLTPTA DII +DADY+LIQ
Sbjct: 495 KMFQHEAETHAQVSKSRPRNNLTPTAADIIPADADYVLIQ 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478681|ref|NP_001154383.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193017|gb|AEE31138.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/338 (74%), Positives = 294/338 (86%), Gaps = 4/338 (1%)

Query: 1   MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
           M++LLYEVPVRV GGLLFELLGQS GDP + EDD+P+V RSWQA+NFL++ +H+KG VS 
Sbjct: 235 MRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSK 294

Query: 61  NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
           +NVLGITEV+ELL+ G YNVPRT+HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct: 295 SNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMN 354

Query: 121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
           RRN ED+NLF+IILNQEIR+L+RQ IRVKWSLHAREEI+ EL QHLRGN+ R LLEG+R 
Sbjct: 355 RRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRN 414

Query: 181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
           N REM+EEQEAVRGRLFTIQD +QS +R+WLQD+SL  +HNLA+FGGCG+VLT+I GLF 
Sbjct: 415 NTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFS 474

Query: 241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
           +N+DG+PG  +TPYAF LF+  L  IG+VLIA GL YLG KKPITEE VE RKLELQ +V
Sbjct: 475 VNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVV 534

Query: 301 KKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ 338
           K FQHEAETHAQ+R   RNNL+PTAGD+  DADY LIQ
Sbjct: 535 KIFQHEAETHAQLR---RNNLSPTAGDVF-DADYFLIQ 568

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2019292	540	AT1G29820 [Arabidopsis thalian	0.988	0.618	0.810	4.8e-149
TAIR|locus:2019282	568	AT1G29830 [Arabidopsis thalian	0.988	0.588	0.745	1.2e-136
TAIR|locus:2045575	501	AT2G42950 [Arabidopsis thalian	1.0	0.674	0.710	1.2e-127
TIGR_CMR|SPO_A0218	322	SPO_A0218 "magnesium transport	0.414	0.434	0.304	1.8e-06
TIGR_CMR|SO_3984	321	SO_3984 "magnesium transporter	0.405	0.426	0.285	0.00026

TAIR|locus:2019292 AT1G29820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1455 (517.2 bits), Expect = 4.8e-149, P = 4.8e-149
 Identities = 274/338 (81%), Positives = 313/338 (92%)

Query:     1 MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
             M++LLYEVPVRVAGGLLFELLGQS GDP + EDD+P+V RSWQA+NFL++ +H+KG V++
Sbjct:   207 MRHLLYEVPVRVAGGLLFELLGQSVGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTN 266

Query:    61 NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
              NVLGITEV+ELL+ GGYNVPRTVHEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct:   267 TNVLGITEVEELLYAGGYNVPRTVHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMN 326

Query:   121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
             RRN ED+NLF+IILNQEIR+LSRQVIRVKWSLHAREEI+FEL QHLRGN+AR LL+G+RK
Sbjct:   327 RRNYEDLNLFSIILNQEIRKLSRQVIRVKWSLHAREEIIFELLQHLRGNIARHLLDGLRK 386

Query:   181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
             N REM+EEQEAVRGRLFTIQDVMQS+VRAWLQD+SLRV+HNLAVFGGCG+VLT+I GLFG
Sbjct:   387 NTREMLEEQEAVRGRLFTIQDVMQSSVRAWLQDKSLRVSHNLAVFGGCGLVLTIIVGLFG 446

Query:   241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
             INVDGIPGA NTPYAFGLFT ++  +G +LI VGL+YLGLKKPITEEQVEVRKLELQ++V
Sbjct:   447 INVDGIPGAQNTPYAFGLFTFLMVLLGAILIVVGLVYLGLKKPITEEQVEVRKLELQDVV 506

Query:   301 KKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ 338
             K FQHEAETHAQ+R   RNNL+PTAGD+  DADYILIQ
Sbjct:   507 KIFQHEAETHAQLR---RNNLSPTAGDVF-DADYILIQ 540

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2019282 AT1G29830 [Arabidopsis thaliana (taxid:3702)]

 Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
 Identities = 252/338 (74%), Positives = 294/338 (86%)

Query:     1 MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
             M++LLYEVPVRV GGLLFELLGQS GDP + EDD+P+V RSWQA+NFL++ +H+KG VS 
Sbjct:   235 MRHLLYEVPVRVDGGLLFELLGQSMGDPVIGEDDVPVVFRSWQAKNFLVSVMHIKGNVSK 294

Query:    61 NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
             +NVLGITEV+ELL+ G YNVPRT+HEVIAHLACRLSRWDDRLFRK+IFGAADEIELKF+N
Sbjct:   295 SNVLGITEVEELLYAGSYNVPRTIHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMN 354

Query:   121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
             RRN ED+NLF+IILNQEIR+L+RQ IRVKWSLHAREEI+ EL QHLRGN+ R LLEG+R 
Sbjct:   355 RRNHEDLNLFSIILNQEIRKLARQTIRVKWSLHAREEIILELLQHLRGNIPRHLLEGLRN 414

Query:   181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
             N REM+EEQEAVRGRLFTIQD +QS +R+WLQD+SL  +HNLA+FGGCG+VLT+I GLF 
Sbjct:   415 NTREMLEEQEAVRGRLFTIQDNIQSNIRSWLQDQSLNGSHNLAIFGGCGLVLTIILGLFS 474

Query:   241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
             +N+DG+PG  +TPYAF LF+  L  IG+VLIA GL YLG KKPITEE VE RKLELQ +V
Sbjct:   475 VNLDGVPGVKHTPYAFVLFSVFLVLIGIVLIAFGLRYLGPKKPITEEHVEARKLELQNVV 534

Query:   301 KKFQHEAETHAQVRKNVRNNLTPTAGDIISDADYILIQ 338
             K FQHEAETHAQ+R   RNNL+PTAGD+  DADY LIQ
Sbjct:   535 KIFQHEAETHAQLR---RNNLSPTAGDVF-DADYFLIQ 568

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2045575 AT2G42950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1253 (446.1 bits), Expect = 1.2e-127, P = 1.2e-127
 Identities = 243/342 (71%), Positives = 285/342 (83%)

Query:     1 MKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSS 60
             MK++ YEVPVRVAGGLLFELLGQSAGDPF+ EDDIPIVLRSWQAQNFL+TALHVKG   +
Sbjct:   160 MKHIFYEVPVRVAGGLLFELLGQSAGDPFIQEDDIPIVLRSWQAQNFLVTALHVKGFALN 219

Query:    61 NNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVN 120
              +VLGITEVQE+L  GG  +PRTVHE+IAHLACRL+RWDDRLFRK IFGAADE+EL F+N
Sbjct:   220 ISVLGITEVQEMLIAGGACIPRTVHELIAHLACRLARWDDRLFRKYIFGAADEVELMFMN 279

Query:   121 RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRK 180
             +R  ED NLF  ILNQEIRRLS QVIRVKWSLHAREEIVFEL Q L+GN  + LLEGI+K
Sbjct:   280 KRLYEDPNLFTTILNQEIRRLSTQVIRVKWSLHAREEIVFELLQQLKGNRTKDLLEGIKK 339

Query:   181 NAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFG 240
             + R+MI EQEAVRGRLFTIQDVMQ+TVRAWLQD+SL VTHNL +FGG G+++T++TGLFG
Sbjct:   340 STRDMINEQEAVRGRLFTIQDVMQNTVRAWLQDQSLTVTHNLGIFGGVGLLITIVTGLFG 399

Query:   241 INVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQELV 300
             INVDGIPGA + P AF LF+ +LF  G+VL+  GL+YLGLK+P+ EE VE RKLEL E+V
Sbjct:   400 INVDGIPGAKDFPQAFALFSVVLFVSGLVLVVAGLIYLGLKEPVAEENVETRKLELDEMV 459

Query:   301 KKFQHEAETHAQVRKNVRNNLTPTAGD---IISDAD-YILIQ 338
             KKFQ EAE+HAQV K V  N+  T      I+ D + Y+L++
Sbjct:   460 KKFQQEAESHAQVCKKVPQNIERTTSRSRMIVHDPNGYVLLE 501

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|SPO_A0218 SPO_A0218 "magnesium transporter, CorA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 46/151 (30%), Positives = 72/151 (47%)

Query:   134 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRG---NVARTLLEGIRKNAREMIEEQE 190
             ++  +  L   VI+++  LH + E +  L ++  G   +    LL       R  IEE +
Sbjct:   178 MHDRLSALRLTVIKLRRYLHPQREALDALLRNEAGLFDSAGLVLLREAVDRTRRTIEELD 237

Query:   191 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 250
             A R RL  +QD + S     L   S  ++   AVF    + L  +TGLFG+N+ G+PG  
Sbjct:   238 ATRDRLAAVQDQIASEQVRLLGRNSFVLSVVAAVF----LPLGFLTGLFGVNIAGMPGT- 292

Query:   251 NTPYAFGLFTAILFFIGVVLIAVGLLYLGLK 281
              TP AF L       +G+ ++   LL+  LK
Sbjct:   293 GTPLAFWLLAGASALLGLAIV---LLFRLLK 320

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

TIGR_CMR|SO_3984 SO_3984 "magnesium transporter, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
 Identities = 42/147 (28%), Positives = 70/147 (47%)

Query:   134 LNQEIRRLSRQVIRVKWSLHAREEIVFELY--QHLRGNVARTL-LEGIRKNAREMIEEQE 190
             L  +I  L RQ + ++  L  ++E   ++   Q +  N    L +     N    IE+ +
Sbjct:   177 LRTDIAELRRQTVALRRYLGPQKEAFAKMLSEQFVLFNEPEKLKMRETTNNLIRTIEDLD 236

Query:   191 AVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGAD 250
             A+R R    Q+ + S     L  R   ++    +F    + L  +TGL G+N+ GIPGAD
Sbjct:   237 ALRDRANVTQEELLSQQSEQLNKRLYFLSLVSVIF----LPLGFLTGLLGVNIGGIPGAD 292

Query:   251 NTPYAFGLFTAILFFIGVVLIAVGLLY 277
             N  +AF  F  IL  + +V + + +LY
Sbjct:   293 NN-FAFTSFCIIL--VSLVALQMVILY 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.141   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      338       338   0.00094  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  211 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.91u 0.08s 29.99t   Elapsed:  00:00:01
  Total cpu time:  29.91u 0.08s 29.99t   Elapsed:  00:00:01
  Start:  Thu May  9 19:16:31 2013   End:  Thu May  9 19:16:32 2013

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=ISS

GO:0015693 "magnesium ion transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_204000004 hypothetical protein (470 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
cd12833	290	cd12833, ZntB-like_1, Salmonella typhimurium Zn2+	3e-15
pfam01544	291	pfam01544, CorA, CorA-like Mg2+ transporter protei	7e-11
COG0598	322	COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan	4e-07
cd12824	290	cd12824, ZntB-like, Salmonella typhimurium Zn2+ tr	6e-06
PRK09546	324	PRK09546, zntB, zinc transporter; Reviewed	7e-05
cd12827	289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	2e-04
cd12823	323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	4e-04
cd12822	289	cd12822, TmCorA-like, Thermotoga maritima CorA-lik	7e-04
cd12834	290	cd12834, ZntB_u1, Uncharacterized bacterial subgro	0.002
cd12821	285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	0.002

>gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup

 Score = 74.5 bits (184), Expect = 3e-15
 Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 46/250 (18%)

Query: 37  IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRL- 95
           + +R W     +I+            +L + +++E L  G    P++  + +A LA RL 
Sbjct: 67  VSIRLWITPGRIIS-------TRRRRLLAVDDIREALEAG--KGPKSPGDFLAALAERLT 117

Query: 96  SRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNL--FAIILNQEIRRLSRQVIRVKWSLH 153
            R +D      I    D ++        LE+  L      L  E+  L RQ I ++  L 
Sbjct: 118 DRMED-----VIDELEDRLD-------ELEERVLEEEDEELRGELAELRRQAIALRRYLA 165

Query: 154 ---------AREEIV-FELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVM 203
                    ARE++        LR      L E   +  R  IE+ +A+R R   +Q+ +
Sbjct: 166 PQRDALERLAREDLPWLSDDDRLR------LREAADRLTR-YIEDLDAIRERAAVLQEEL 218

Query: 204 QSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAIL 263
            +     +  R   ++   A+F    + L  +TGL GINV GIPGA+N P+AF +F  +L
Sbjct: 219 TNRRAEQMNRRMYVLSIVAAIF----LPLGFLTGLLGINVGGIPGAEN-PWAFWIFCGLL 273

Query: 264 FFIGVVLIAV 273
             + V L+ +
Sbjct: 274 VVLAVGLLLL 283

A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 32/262 (12%)

Query: 27  DPFVDEDDIPIVLRS---WQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRT 83
           D  +D+D+    L     +   N LIT       V    +  + E+++ L   G   P++
Sbjct: 56  DVNLDKDEEEEDLVPLSIFLGDNRLIT-------VRREPLPAVDEIRKRLENLGLG-PKS 107

Query: 84  VHEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSR 143
             +++  L   +      +  K +    DE+E +  +    E +        +E+ RL R
Sbjct: 108 PGDLLYLLLDSIVDRYFEILEK-LEEELDELEDELEDSTTNELL--------RELLRLRR 158

Query: 144 QVIRVKWSLHAREEIVFELYQHLRGNV---ARTLLEGIRKNAREMIEEQEAVRGRLFTIQ 200
            ++R++ SL    E++  L       +    +  L  +      ++E  E +R RL ++Q
Sbjct: 159 SLVRLRRSLAPLREVLNRLLSDDGPLIDEEEKEYLRDLLDELERLLEMAEILRERLRSLQ 218

Query: 201 DVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFT 260
           D   S +     +R  R+   L V     + LT+ITG++G+N  G+P  D   + +G   
Sbjct: 219 DAYLSLL----SNRLNRIMKVLTVVSAIFLPLTLITGIYGMNFKGMPELD---WPYGYPF 271

Query: 261 AILFFIGVVLIAVGLLYLGLKK 282
            I   +G++L+   LL L  ++
Sbjct: 272 WI--VLGLMLLLAILLILYFRR 291

The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell. Length = 291

>gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 136 QEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRGNVARTLLEGIRKNAREMIEEQEAV 192
           + +  L R ++ ++ +L    +++  L +          R  L  +  +  ++IE  EA+
Sbjct: 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEAL 239

Query: 193 RGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNT 252
           R RL ++ D   S +     +    +   L +     +  T+ITG +G+N  G+P   + 
Sbjct: 240 RERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPEL-DW 294

Query: 253 PYAFGLFTAILFFIGVVLIAV 273
           PY + +   ++  + ++L   
Sbjct: 295 PYGYPIALILMLLLALLLYLY 315

Length = 322

>gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter ZntB-like subfamily

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 141 LSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREM---IEEQEAVRGRLF 197
           L R++ R++  +  +++ +  L       +  +  E +R+ +  +   +E  +  R R+ 
Sbjct: 153 LQRRLFRIRRQIRPQQQALRPLITDPAELLVTSDRETLRRASNNVTRYLETLDFCRTRVA 212

Query: 198 TIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFG 257
            +QD     ++A   +++ R +  L V     + LT ITGL G+NV GIP  ++ P  F 
Sbjct: 213 LLQD----EIKAQRDEKTTRSSLLLTVVATVFLPLTFITGLLGMNVGGIPDVES-PMGF- 266

Query: 258 LFTAILFFIGVVLIAVGLLYLGLKK 282
                 +  G+ ++   L +L L++
Sbjct: 267 -----WWVTGLSILVALLAWLLLRR 286

A bacterial subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl|CDD|181941 PRK09546, zntB, zinc transporter; Reviewed

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 233 TVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGL 275
           T +TGLFG+N+ GIPG    P+ F +F  +L  + +  +A  L
Sbjct: 278 TFLTGLFGVNLGGIPGGGW-PFGFSIFCLLLVVL-IGGVAWWL 318

Length = 324

>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 6/52 (11%)

Query: 231 VLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 282
           + T+ITG +G+NV  +P AD+ PYAF     I+  I ++L  +  L L  KK
Sbjct: 242 IPTIITGFYGMNVP-LPFADS-PYAF----WIILLISLLLSVIVALILRRKK 287

A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 289

>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 28/131 (21%)

Query: 157 EIVFELY-QHLRG--NVARTLLEGIRKNAREMIE-EQEAVRGRLFTIQDVMQSTVRAWLQ 212
           E++ E Y Q +    N    L E I  +  E+I    ++ R +L  ++            
Sbjct: 215 EMLLEAYLQQVDELLNKLEELREYID-DTEELINLILDSRRNQLMRLE------------ 261

Query: 213 DRSLRVTHNLAVFGGCGV-VLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLI 271
              L+++      G   + V T++ GLFG+N+    G + +PYAF + T       +++ 
Sbjct: 262 ---LKLS-----IGTLSLAVGTLVAGLFGMNL--PSGLEESPYAFWIVTGGSVVGSILIF 311

Query: 272 AVGLLYLGLKK 282
            V L YL  K+
Sbjct: 312 IVVLRYLRRKR 322

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 40/183 (21%)

Query: 112 DEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRV-KWSLHAREEIVFELYQHLRGNV 170
           DE+E + +     E +         E+  L R+++R+ +     RE     +   L    
Sbjct: 131 DELEDEILEEPRREVLR--------ELFALRRELLRLRRILSPQRE-----VLNRLLRRE 177

Query: 171 ARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNL-------- 222
              + E +R   R++ +  E +   L + +D++ S + A+L   SL  ++          
Sbjct: 178 NELISEELRPYFRDVYDHLERLAELLDSYRDLLSSLLDAYL---SL-QSNRTNEVMKVLT 233

Query: 223 ---AVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLG 279
               +F    + LT ITG++G+N + +P     PY +         +G++L+  G L   
Sbjct: 234 IITTIF----LPLTFITGIYGMNFEYMPELHW-PYGY------FIVLGIMLLIAGGLLWW 282

Query: 280 LKK 282
            ++
Sbjct: 283 FRR 285

This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 289

>gnl|CDD|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 7/50 (14%)

Query: 233 TVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 282
           T++TGLFG+N  G+P A+      G + A+     + L+A GL YL L++
Sbjct: 244 TLVTGLFGMNTGGLPLAEGP---HGFWIAVA----LALLAAGLAYLLLRR 286

The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290

>gnl|CDD|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 111 ADEIELKFVN-RRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVF---ELYQHL 166
            D+ E K      +L + N    I    I  L R+++R+   +  ++E++    E +  L
Sbjct: 120 IDQFEEKLEELEWDLLEGNN--AIKLDRILELRRELLRLTNLIEPQQEVLMALQEAFAEL 177

Query: 167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR----VTHNL 222
             +     L         +++  E     L T+QD+ +  V +   +  ++    VT   
Sbjct: 178 LFSEDEEELRRTLDRIERLLQLIEEYEQELDTLQDIEEV-VSSHRGNEIMKTLTVVT--- 233

Query: 223 AVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 282
            VF      LT+I GL+G+N   +P  +   Y +      LF +G+++++   LYL L++
Sbjct: 234 TVFLP----LTLIGGLWGMNFKNMPELEW-KYGY------LFVLGLIILSTAGLYLYLRR 282

A family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this family are found in all three kingdoms of life. It is a functionally diverse family, including the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs (which can also transport Co2+, and Ni2+ ), and the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). It also includes two Saccharomyces cerevisiae members: the inner membrane Mg2+ transporters Mfm1p/Lpe10p, and Mrs2p, and a family of Arabidopsis thaliana members (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PRK09546	324	zntB zinc transporter; Reviewed	100.0
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	100.0
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	100.0
KOG2662	414	consensus Magnesium transporters: CorA family [Ino	99.23
COG0598	322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	95.7
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	94.61
PF11902	420	DUF3422: Protein of unknown function (DUF3422); In	93.27
PF07332	121	DUF1469: Protein of unknown function (DUF1469); In	92.43
PRK09546	324	zntB zinc transporter; Reviewed	91.76
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	91.76
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.67
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	91.05
PRK11085	316	magnesium/nickel/cobalt transporter CorA; Provisio	89.64
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	88.49
PF11593	379	Med3: Mediator complex subunit 3 fungal; InterPro:	84.43
PF06210	108	DUF1003: Protein of unknown function (DUF1003); In	83.82
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	82.58
COG3462	117	Predicted membrane protein [Function unknown]	80.56

>PRK09546 zntB zinc transporter; Reviewed

Probab=100.00  E-value=4.2e-46  Score=358.74  Aligned_cols=243  Identities=19%  Similarity=0.303  Sum_probs=215.4

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH   90 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~   90 (338)
                      ++++++|++++++.. ++...+.++ .+++||+++|+|||+|++       +...++++++++.++.  .+.++.++++.
T Consensus        78 ~~~~~~~iil~~~~~-~~~~~~~~~-~~l~~~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~--~~~~~~~ll~~  146 (324)
T PRK09546         78 RLGEGTLITLRCING-NTDERPDQL-VAMRVYITDRLIVSTRHR-------KVLALDDVVSDLQEGT--GPTDCGGWLVD  146 (324)
T ss_pred             EECCEEEEEEEeccC-CCCCChhhe-EEEEEEEeCCEEEEEecC-------CcccHHHHHHHHHhCC--CCCCHHHHHHH
Confidence            489999999999876 444333344 899999999999999987       7899999999998875  56678899999


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594           91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR  167 (338)
Q Consensus        91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~  167 (338)
                      +++.++|.|.+ .++.++++++++|++++.++..         .+++|+.+||+++++|+++.|+++++.+|.+   ...
T Consensus       147 lld~ivd~~~~-~l~~i~~~ld~lE~~l~~~~~~---------~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~  216 (324)
T PRK09546        147 VCDALTDHASE-FIEELHDKIIDLEDNLLDQQIP---------PRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWM  216 (324)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999 8999999999999999875322         1469999999999999999999999999984   233


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 019594          168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIP  247 (338)
Q Consensus       168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP  247 (338)
                      +++.+.+++|+.+|+.++.++++++++++..++|.+.+.+    |+++|++||+||++|+||+|||||||+|||||++||
T Consensus       217 ~~~~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~----s~~~N~~m~~Ltilt~IflPlT~IaGiyGMNf~~mP  292 (324)
T PRK09546        217 SDDDRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVM----AEAMNRRTYTMSLMAMVFLPTTFLTGLFGVNLGGIP  292 (324)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence            5568999999999999999999999999999999999998    889999999999999999999999999999999999


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          248 GADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       248 ~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      |++ |+||||+++++|++++++++|    ||++|||
T Consensus       293 el~-~~~gy~~~l~im~~i~~~~~~----~fkrk~W  323 (324)
T PRK09546        293 GGG-WPFGFSIFCLLLVVLIGGVAW----WLKRSKW  323 (324)
T ss_pred             CcC-CcchHHHHHHHHHHHHHHHHH----HHHhccc
Confidence            999 999999999999998876544    5666776

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-45  Score=352.79  Aligned_cols=244  Identities=20%  Similarity=0.270  Sum_probs=219.9

Q ss_pred             eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 019594           12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHL   91 (338)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~L   91 (338)
                      ++++.|++++++.. ++..+..+ +.+++|+++++++||+|+.       +..+++.+++++.++. ..++++.++++++
T Consensus        75 ~d~~~~i~~~~~~~-~~~~~~~~-~~~v~~i~~~~~liT~r~~-------~~~~~~~vr~r~~~~~-~~~~~~~~l~~~l  144 (322)
T COG0598          75 YDDYLFIVLRDVNL-EEEEDKAE-TEPVSIIVGKRRLITIRHR-------PLPAFDRVRERLEKGT-LLTRGADELLYAL  144 (322)
T ss_pred             eCCEEEEEEEeecc-cccccccc-ceeEEEEEeCCEEEEEecC-------CCccHHHHHHHHhccc-cccCCHHHHHHHH
Confidence            78889999999876 33332223 3899999999999999997       7899999999999863 3688999999999


Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcc
Q 019594           92 ACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRG  168 (338)
Q Consensus        92 l~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l~~  168 (338)
                      ++.++|+|.+ .++.++++++++|++++..+.++        .+.+|+.+||.++.+|+++.|+++++..+.+.   ...
T Consensus       145 ld~i~d~~~~-~le~i~~~~~~ie~~l~~~~~~~--------~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~  215 (322)
T COG0598         145 LDAIVDNYFP-VLEQIEDELEAIEDQLLASTTNE--------ELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLS  215 (322)
T ss_pred             HHHHHHhhHH-HHHHHHHHHHHHHHHHhcCccHH--------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCC
Confidence            9999999999 89999999999999999987653        47899999999999999999999999999863   346


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 019594          169 NVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPG  248 (338)
Q Consensus       169 ~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~  248 (338)
                      ++.+.+++|+.+|+.++.+.++.++++++.++|.+.|.+    |++||++||+||++|+||+|||+|||+|||||++|||
T Consensus       216 ~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i----s~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPe  291 (322)
T COG0598         216 EEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI----NNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPE  291 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcC
Confidence            679999999999999999999999999999999999998    8999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          249 ADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       249 l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      ++ ||||||+++++|+++++++    ..|+++|+|
T Consensus       292 l~-~~~Gy~~~l~~m~~~~~~~----~~~frrk~W  321 (322)
T COG0598         292 LD-WPYGYPIALILMLLLALLL----YLYFRRKGW  321 (322)
T ss_pred             CC-CcccHHHHHHHHHHHHHHH----HHHHHhcCc
Confidence            99 9999999999999998855    556677766

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=100.00  E-value=4.3e-43  Score=336.32  Aligned_cols=246  Identities=17%  Similarity=0.184  Sum_probs=214.0

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH   90 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~   90 (338)
                      .++++.|++++.+.. ++..+. . +.+++|+++++++||++++       +...++.+.+++..++.....++.+++++
T Consensus        69 ~~~~~~~i~~~~~~~-~~~~~~-~-~~~l~~~l~~~~liTv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  138 (318)
T TIGR00383        69 EDEDHLFIISFFLNE-DEDDTF-E-TEQVSFILGKNLLFTIHER-------ELPAFDSIRERIRTSQKVFEKGADYLLYD  138 (318)
T ss_pred             EECCEEEEEEEeeec-cCCCcc-e-eEEEEEEEECCEEEEEEcC-------CCCcHHHHHHHHHhCchhhhCCHHHHHHH
Confidence            478999999998775 322222 2 3789999999999999987       67889999998876541123478999999


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--h--
Q 019594           91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--L--  166 (338)
Q Consensus        91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l--  166 (338)
                      +++.++++|.+ .++.++++++++|+.+++++.++        .+.+|+.+|+++..+|+++.|+++++.++.+.  .  
T Consensus       139 il~~ivd~~~~-~l~~l~~~~~~le~~l~~~~~~~--------~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~  209 (318)
T TIGR00383       139 IFDAIIDSYFP-LLENIEDELEELEDEIISGPTST--------LMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI  209 (318)
T ss_pred             HHHHHHhccHH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            99999999999 89999999999999999875433        47899999999999999999999999999852  2  


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI  246 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m  246 (338)
                      ..++.+.+++|+.+++.++.+.++.+++.++.++|.+.+.+    |+++|++||+||++|+||+|||||||+|||||++|
T Consensus       210 ~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~----s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~m  285 (318)
T TIGR00383       210 QTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLV----NNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFM  285 (318)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            23557889999999999999999999999999999999998    89999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 019594          247 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI  284 (338)
Q Consensus       247 P~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~  284 (338)
                      |+++ |+||||+++++|++++++    .+.||++|+|+
T Consensus       286 P~l~-~~~gy~~~l~~m~~i~~~----~~~~fkrk~Wl  318 (318)
T TIGR00383       286 PELN-WKYGYPAVLIVMAVIALG----PLIYFRRKGWL  318 (318)
T ss_pred             cccc-chhHHHHHHHHHHHHHHH----HHHHHHHcCCC
Confidence            9999 999999999999998875    45567777763

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=100.00  E-value=5.2e-39  Score=307.10  Aligned_cols=246  Identities=11%  Similarity=0.060  Sum_probs=206.0

Q ss_pred             eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHHH
Q 019594           12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHL   91 (338)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~L   91 (338)
                      +++++++...-... .+...+.  +.+++|+++++++||+|+.       +...+..+++++..++. ...++.++++.|
T Consensus        68 ~~~~~~~~~~~~~~-~~~~~~~--~~~v~fil~~~~LvTvr~~-------~~~~f~~~~~r~~~~~~-~~~~~~~vl~~L  136 (316)
T PRK11085         68 DEDGLHIHSFFFFE-DAEDHAG--NSTVAFTIRDGRLFTLRER-------ELPAFRLYRMRARSQTL-VDGNAYELLLDL  136 (316)
T ss_pred             ECCeEEEEEEEEec-CCCCCcc--ceeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhCCc-ccCCHHHHHHHH
Confidence            56666655544443 2222232  3789999999999999998       78899999999977751 255889999999


Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--hcch
Q 019594           92 ACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LRGN  169 (338)
Q Consensus        92 l~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l~~~  169 (338)
                      ++.++|++.+ .++.++.++|+++..++.++...+    ...++++|.++++.+..+|+++.|.++++..+.+.  +.. 
T Consensus       137 ld~iVd~~ad-~lE~~~~~ld~ls~~if~~~~~~~----~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~-  210 (316)
T PRK11085        137 FETKIEQLAD-EIENIYSDLEKLSRVIMEGHQGDE----YDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPG-  210 (316)
T ss_pred             HHHHHHHhHH-HHHHHHHHHHHHHHHhccCCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCh-
Confidence            9999999999 999999999999999997542222    23567899999999999999999999999988752  222 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 019594          170 VARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGA  249 (338)
Q Consensus       170 ~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l  249 (338)
                      +....++++.+++.++.+..+.+++++..++|.+.+.+    |+++|++||+||++|+||+|||+|||+|||||++|||+
T Consensus       211 ~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i----~~~~N~~mk~lTv~s~if~pptliagiyGMNf~~mP~~  286 (316)
T PRK11085        211 GQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFI----NIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPEL  286 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCC
Confidence            24456788888999999999999999999999999998    89999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          250 DNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       250 ~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      + |+||||+++++|+++++++    +.|+++|+|
T Consensus       287 ~-~~~g~~~~l~~~~~~~~~~----~~~f~rk~W  315 (316)
T PRK11085        287 K-WSFGYPGAIILMILAGLAP----YLYFKRKNW  315 (316)
T ss_pred             C-CcHHHHHHHHHHHHHHHHH----HHHHHHccc
Confidence            9 9999999999999988755    345666666

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=100.00  E-value=2.5e-37  Score=290.85  Aligned_cols=234  Identities=24%  Similarity=0.324  Sum_probs=197.6

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH   90 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~   90 (338)
                      .++++.+++++.+.. .+....... .+++++++++++||++++       +...++++.+++.... ..+.++.++++.
T Consensus        45 ~~~~~~~~~l~~~~~-~~~~~~~~~-~~l~~~~~~~~lit~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~ll~~  114 (292)
T PF01544_consen   45 VFDDYLFIVLRAPEY-EEEDDIDEE-SPLSFILGDNFLITVHRD-------PLPFIDELRERLESRN-ERPSSPEDLLYA  114 (292)
T ss_dssp             EETTEEEEEEEEEEE-STTCCECCE-EEEEEEEETTEEEEEESS-------SSHCHHHHHHHHHSTT-CSCSSHHHHHHH
T ss_pred             EECCeEEEEEEEcch-hhccccccc-ceEEEEEecceEEEEECC-------CChHHHHHHHHhhccC-CCCCCHHHHHHH
Confidence            478999999999887 443333222 579999999999999997       7888999999988222 377899999999


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----hh
Q 019594           91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HL  166 (338)
Q Consensus        91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~----~l  166 (338)
                      +++.+++.+.+ .++.++++++++|+.+.+.+.++        ..++|..+|+++..+++.+.+.++++.++.+    ..
T Consensus       115 il~~~~~~~~~-~l~~l~~~l~~le~~~~~~~~~~--------~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~  185 (292)
T PF01544_consen  115 ILDEIVDDYFE-VLEELEDELDELEDELDDRPSNE--------LLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPF  185 (292)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHTHTTTHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTT
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHhhcccccchh--------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhh
Confidence            99999999999 89999999999999995554433        5789999999999999999999999977775    22


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI  246 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m  246 (338)
                      .+++...+++++.+++.++.+.++.+++++..+.+.+.+.+    +.++|++||+||++|+||+|+|||||+|||||++|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~~~  261 (292)
T PF01544_consen  186 ISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKL----SNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFKGM  261 (292)
T ss_dssp             SHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS--
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCC
Confidence            34457888999999999999999999999999999999998    88999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHH--HHHHHHHHH
Q 019594          247 PGADNTPYAFGLF--TAILFFIGV  268 (338)
Q Consensus       247 P~l~~~~~gf~~~--~~imv~i~~  268 (338)
                      |+.+ |+|||+++  +++|+++++
T Consensus       262 p~~~-~~~g~~~~~~~~~~~~~~~  284 (292)
T PF01544_consen  262 PELD-WPYGYFFVIILGLMILVAI  284 (292)
T ss_dssp             -SSS-SSS-SHHH--HHHHHHHHH
T ss_pred             CccC-CccHHHHHHHHHHHHHHHH
Confidence            9999 99988777  666666554

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.7e-09  Score=104.71  Aligned_cols=144  Identities=22%  Similarity=0.316  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------hh---------------cc----------------hh
Q 019594          134 LNQEIRRLSRQVIRVKWSLHAREEIVFELYQ------------HL---------------RG----------------NV  170 (338)
Q Consensus       134 ~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~------------~l---------------~~----------------~~  170 (338)
                      .++++..+++.+..+-.=....++.+.+|++            ++               ..                .+
T Consensus       218 nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~d  297 (414)
T KOG2662|consen  218 NLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGED  297 (414)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccc
Confidence            4788889999999888877888888888762            11               00                00


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccCC
Q 019594          171 ART----LLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVT---HNLAVFGGCGVVLTVITGLFGINV  243 (338)
Q Consensus       171 ~~~----~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vm---k~LTivs~IflPlT~ItGifGMNf  243 (338)
                      +..    .++.-..++..+.+.++.+++.++.-.|.+.=.    ++++.|..|   -.||+-|.++..-++++|+||||.
T Consensus       298 d~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~----LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl  373 (414)
T KOG2662|consen  298 DVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQ----LDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNL  373 (414)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            011    111112234444444555555555544444433    366677766   468999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          244 DGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       244 ~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      + .+.-+ .+|+|+++.++++++|++++...+-|.+.||-
T Consensus       374 ~-~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL  411 (414)
T KOG2662|consen  374 P-SSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRL  411 (414)
T ss_pred             c-chhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9 56656 78999999999999999998887777777763

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]

Probab=95.70  E-value=1.9  Score=41.70  Aligned_cols=163  Identities=13%  Similarity=0.137  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  179 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~  179 (338)
                      ..+.+..-++++|+++-.=..  .      .....-....+++..+|+.+.-.++.+..+.+   .+........-.+..
T Consensus       148 i~d~~~~~le~i~~~~~~ie~--~------l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~  219 (322)
T COG0598         148 IVDNYFPVLEQIEDELEAIED--Q------LLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDR  219 (322)
T ss_pred             HHHhhHHHHHHHHHHHHHHHH--H------HhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHH
Confidence            567777778888877643210  0      01112224777788888888888777666543   333332224456778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCc-hH-H
Q 019594          180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY-AF-G  257 (338)
Q Consensus       180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~-gf-~  257 (338)
                      +.++.+.+++..+.++++.+.+..+++.++..+.-.|+.=.++-++|++-..+.-.|=+-|. |+ |=.-. -|- .+ |
T Consensus       220 ~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-yG-MNf~~-mPel~~~~  296 (322)
T COG0598         220 EYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-YG-MNFKG-MPELDWPY  296 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-cc-cCCCC-CcCCCCcc
Confidence            88999999999999999999999999999999999999889999999999999999999996 54 66544 453 33 3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 019594          258 LFTAILFFIGVVLIAVGLLYLGL  280 (338)
Q Consensus       258 ~~~~imv~i~~~l~~~~~~~~~~  280 (338)
                      ...+++    ++++.+++.-+..
T Consensus       297 Gy~~~l----~~m~~~~~~~~~~  315 (322)
T COG0598         297 GYPIAL----ILMLLLALLLYLY  315 (322)
T ss_pred             cHHHHH----HHHHHHHHHHHHH
Confidence            334333    3344566655543

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=94.61  E-value=2.2  Score=40.82  Aligned_cols=160  Identities=14%  Similarity=0.175  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhH-HHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVA-RTLLEGI  178 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~-~~~l~dv  178 (338)
                      .++.+...++++|+++.+=..    +++    ...-....+++..+|+.+.-.+..+.....   .+..... ...-.+.
T Consensus       143 ivd~~~~~l~~l~~~~~~le~----~l~----~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~  214 (318)
T TIGR00383       143 IIDSYFPLLENIEDELEELED----EII----SGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEV  214 (318)
T ss_pred             HHhccHHHHHHHHHHHHHHHH----HHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence            566777788888877743211    000    001123445677888877766666555443   3433321 1122556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCch--H
Q 019594          179 RKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA--F  256 (338)
Q Consensus       179 ~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~g--f  256 (338)
                      ...++.+.++++.+.+.++.+.+...+..+...+...|+.=+++-.+|++-+..+-.|=+=|. |+ |=.-. -|..  -
T Consensus       215 ~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGi-yG-MNf~~-mP~l~~~  291 (318)
T TIGR00383       215 REYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGI-YG-MNFKF-MPELNWK  291 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCccc-Cccccch
Confidence            677888888999999999999999999999999999999999999999999999999999997 54 66544 4542  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019594          257 GLFTAILFFIGVVLIAVGLLY  277 (338)
Q Consensus       257 ~~~~~imv~i~~~l~~~~~~~  277 (338)
                      |...+++    ++++.+++.-
T Consensus       292 ~gy~~~l----~~m~~i~~~~  308 (318)
T TIGR00383       292 YGYPAVL----IVMAVIALGP  308 (318)
T ss_pred             hHHHHHH----HHHHHHHHHH
Confidence            4344333    2334466543

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised

Probab=93.27  E-value=10  Score=38.23  Aligned_cols=174  Identities=17%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             HhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH--------
Q 019594           96 SRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSL---HAREEIVFELYQ--------  164 (338)
Q Consensus        96 ~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l---~~~~~vi~~L~~--------  164 (338)
                      +....+ .+..+|.++.+|=..+-+....++      .++.+|..|--++-.+.-..   ....+++.++..        
T Consensus       211 Ar~~~~-~L~~~E~~L~~l~~~~~~~~~~~~------~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE  283 (420)
T PF11902_consen  211 ARELSP-ELSELEQRLAALTQRMASSEDTDD------ELLDELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELRE  283 (420)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcc
Confidence            344445 577777777777777776643332      36677777777665542211   111223333331        


Q ss_pred             -hhcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 019594          165 -HLRG-----NVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVR-----------------AWLQDRSLRVTHN  221 (338)
Q Consensus       165 -~l~~-----~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~-----------------~~~~~~~N~vmk~  221 (338)
                       ++.+     +-..+.+.-....|..+.+.++.+.+++....+...+.++                 +.++-++.+..-=
T Consensus       284 ~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rRa~lQLrLQqtVEG  363 (420)
T PF11902_consen  284 ERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRRARLQLRLQQTVEG  363 (420)
T ss_pred             cccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             1111     1112222222333333333333333333333222222221                 2244555556666


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 019594          222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLK  281 (338)
Q Consensus       222 LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~  281 (338)
                      |+|+++-.-    +.|+.|-=++++.... +|+.--++.++++-+.++.+|+++++.+.|
T Consensus       364 LSVvAIsYY----~vgL~~y~~k~l~~~g-~~~~~~l~~g~~vP~v~~~vw~~~rrir~~  418 (420)
T PF11902_consen  364 LSVVAISYY----VVGLLGYLLKGLKAAG-LPVDPELATGLAVPVVLLAVWLGVRRIRRR  418 (420)
T ss_pred             HHHHHHHHH----HHHHHHHHHhhHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777766544    4566666677777766 777666677777777788888888877654

This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like

Probab=92.43  E-value=1.6  Score=35.71  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594          253 PYAFGLFTAILFFIGVVLIAVGLLYLGL  280 (338)
Q Consensus       253 ~~gf~~~~~imv~i~~~l~~~~~~~~~~  280 (338)
                      .+|++++.++.+++++++++++.+.+..
T Consensus        72 ~~a~liv~~~~l~la~i~~~~~~~~l~~   99 (121)
T PF07332_consen   72 WLAFLIVAGLYLLLALILLLIGRRRLRR   99 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3688888989999999888888888874

The function is not known.

>PRK09546 zntB zinc transporter; Reviewed

Probab=91.76  E-value=13  Score=35.80  Aligned_cols=140  Identities=9%  Similarity=0.001  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  179 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~  179 (338)
                      .++.+...++++|+++.+=.   +      .+.+.=...++++..+||.+...+..+.....   .+........-++..
T Consensus       151 ivd~~~~~l~~i~~~ld~lE---~------~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~  221 (324)
T PRK09546        151 LTDHASEFIEELHDKIIDLE---D------NLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDR  221 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---H------HHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHH
Confidence            56677777788887764321   0      01111001346788888888877776665543   344322222235566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCc
Q 019594          180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPY  254 (338)
Q Consensus       180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~  254 (338)
                      .+++.+.+++..+.+.++...+...+..+...+...|+.=.++-++|++-.-..-.|=+-|. |+ |=.-+ -|.
T Consensus       222 ~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGi-yG-MNf~~-mPe  293 (324)
T PRK09546        222 RRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGL-FG-VNLGG-IPG  293 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-cccCC-CCC
Confidence            77888888888888888888887777766667777777666666776666555555666665 43 66544 555

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=91.76  E-value=3.4  Score=38.39  Aligned_cols=168  Identities=15%  Similarity=0.177  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcc-hhHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIIL-NQEIRRLSRQVIRVKWSLHAREEIVFELYQH---LRG-NVARTLLEG  177 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~-~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l~~-~~~~~~l~d  177 (338)
                      .++.....++.+++++..-..         .+ ...=...-+++..+|+.+...+..+.....-   +.. ......-.+
T Consensus       119 ~~~~~~~~l~~l~~~l~~le~---------~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~  189 (292)
T PF01544_consen  119 IVDDYFEVLEELEDELDELED---------ELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDE  189 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---------HHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---------hcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhh
Confidence            466667777777776532110         01 1122234455667777776666665554432   111 112222334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHH
Q 019594          178 IRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFG  257 (338)
Q Consensus       178 v~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~  257 (338)
                      ....++.+.++++.+.++++.+.+...+..+...+...++.=+.+..+|++-+...=+|=+=|. |+ |-... -|..-|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-fG-MN~~~-~p~~~~  266 (292)
T PF01544_consen  190 DKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-FG-MNFKG-MPELDW  266 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-TT-S-SS----SSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCccC-CCccCC
Confidence            4566888999999999999999999999998888999999778888877666666444555554 44 65544 454332


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhccCC
Q 019594          258 L-FTAILFFIGVVLIAVGLLYLGLKK  282 (338)
Q Consensus       258 ~-~~~imv~i~~~l~~~~~~~~~~~~  282 (338)
                      - .....+++++.++..++.|+.+||
T Consensus       267 ~~g~~~~~~~~~~~~~~~~~~~~~kR  292 (292)
T PF01544_consen  267 PYGYFFVIILGLMILVAILLYWWFKR  292 (292)
T ss_dssp             SS-SHHH--HHHHHHHHHHHHCCTTS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHheeC
Confidence            2 223333344555556666666665

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.67  E-value=0.96  Score=40.06  Aligned_cols=63  Identities=24%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHhccCCCCch
Q 019594          220 HNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTA-ILFFIGVVLIAVGLLYLGLKKPITE  286 (338)
Q Consensus       220 k~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~-imv~i~~~l~~~~~~~~~~~~~~~~  286 (338)
                      ++.+++++|..-+-+++|+-|-=+. .|++.   -.|...++ ++++++++++..|+.++..+++.+.
T Consensus         5 ~i~~i~~iilgilli~~gI~~Lv~~-~~~l~---~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~   68 (191)
T PF04156_consen    5 RIISIILIILGILLIASGIAALVLF-ISGLG---ALISFILGIALLALGVVLLSLGLLCLLSKRPVQS   68 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            4455566666666666777664343 34333   23333333 3444578888899999988887664

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=91.05  E-value=1.4  Score=39.84  Aligned_cols=52  Identities=29%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc-----chhHHHHHHHHHHHHHHHHHH
Q 019594          137 EIRRLSRQVIRVKWSLHAREEIVFELYQHLR-----GNVARTLLEGIRKNAREMIEE  188 (338)
Q Consensus       137 ~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~-----~~~~~~~l~dv~d~~~~l~~~  188 (338)
                      =+.++++++..-.-.-...++++.++.+++.     +..++..+.+..++++++++.
T Consensus         9 y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~   65 (206)
T PF06570_consen    9 YIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKTARQLFGDPKEYADELIKP   65 (206)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhcc
Confidence            3445555553333333344445555554432     334566666666667666654

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional

Probab=89.64  E-value=21  Score=34.61  Aligned_cols=167  Identities=11%  Similarity=-0.008  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  179 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~  179 (338)
                      .++.+.+.++.++..+-+-...    .+.......+.++=+++.++++.....++.+..+.+   .+...  .....+..
T Consensus       140 iVd~~ad~lE~~~~~ld~ls~~----if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~--~~~~~~~~  213 (316)
T PRK11085        140 KIEQLADEIENIYSDLEKLSRV----IMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRK--ARLPGGQL  213 (316)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH----hccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCChhHH
Confidence            5677777777777766543211    011000013344447788888888888887766554   23221  12233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHH
Q 019594          180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLF  259 (338)
Q Consensus       180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~  259 (338)
                      +++..+.++++.+.++++.+.|...+.+++.++...|+.=.++-++|++-....-.|=+-|+ |+ |-.-. -|..-|- 
T Consensus       214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-yG-MNf~~-mP~~~~~-  289 (316)
T PRK11085        214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-YG-MNFEF-MPELKWS-  289 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-cc-cccCC-CCCCCCc-
Confidence            67888999999999999999999999999999999999999999999999999999999998 54 77555 5643332 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 019594          260 TAILFFIGVVLIAVGLLYLGL  280 (338)
Q Consensus       260 ~~imv~i~~~l~~~~~~~~~~  280 (338)
                      .+.. +..++++..++..+..
T Consensus       290 ~g~~-~~l~~~~~~~~~~~~~  309 (316)
T PRK11085        290 FGYP-GAIILMILAGLAPYLY  309 (316)
T ss_pred             HHHH-HHHHHHHHHHHHHHHH
Confidence            2221 2223344466555543

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=88.49  E-value=20  Score=32.95  Aligned_cols=7  Identities=0%  Similarity=0.088  Sum_probs=3.9

Q ss_pred             cCCCCCC
Q 019594          241 INVDGIP  247 (338)
Q Consensus       241 MNf~~mP  247 (338)
                      |+|=|+|
T Consensus       175 m~fl~v~  181 (230)
T PF03904_consen  175 MDFLHVD  181 (230)
T ss_pred             hhhhhHH
Confidence            5665555

>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=84.43  E-value=8.6  Score=37.74  Aligned_cols=88  Identities=11%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 019594          109 GAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEE  188 (338)
Q Consensus       109 ~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~l~~~~~~~~l~dv~d~~~~l~~~  188 (338)
                      -.+|+||+++-.+....|      .+..+|...|+.++-+|-.+...-..+..|. +..+....+-|--|++++.++.+.
T Consensus         8 ~~LeeLe~kLa~~d~~Kd------~V~~~I~ea~~sILPlRL~FNeFi~tma~Ie-~~~~~s~qeKFl~IR~KlleL~~~   80 (379)
T PF11593_consen    8 LKLEELEEKLASNDNSKD------SVMDKISEAQDSILPLRLQFNEFIQTMANIE-EMNNKSPQEKFLLIRSKLLELYNK   80 (379)
T ss_pred             CcHHHHHHHHhcCCchHH------HHHHHHHHHHhccccHHHHHHHHHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHH
Confidence            357888888886544443      4677888888888877766655555444442 344444555666677777777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 019594          189 QEAVRGRLFTIQDVM  203 (338)
Q Consensus       189 l~~~re~l~~l~d~~  203 (338)
                      +..+..-...|+=.+
T Consensus        81 lQ~lS~df~~LqPLF   95 (379)
T PF11593_consen   81 LQELSSDFQKLQPLF   95 (379)
T ss_pred             HHHHHHHHHHhchHH
Confidence            777666655555433

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=83.82  E-value=12  Score=30.51  Aligned_cols=72  Identities=13%  Similarity=0.073  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Q 019594          225 FGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPITEEQVEVRKLELQEL  299 (338)
Q Consensus       225 vs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (338)
                      ++.|..=..+++++.|.|.-..+...=.||.|.  +.-+++.+...+..-++.....+. ++++..--+.|++--
T Consensus         4 ~~Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFi--lLnl~lS~~Aa~~ap~IlmsQNRq-~~~dr~ra~~D~~in   75 (108)
T PF06210_consen    4 WTFIIIFTVFLAVWILLNILAPPRPAFDPYPFI--LLNLVLSLEAAYQAPLILMSQNRQ-AARDRLRAELDYQIN   75 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCccHH--HHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHHHHH
Confidence            345555667888999999976554221455554  334444444455555666655554 444444444555433

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=82.58  E-value=56  Score=32.72  Aligned_cols=35  Identities=3%  Similarity=0.105  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcc
Q 019594           85 HEVIAHLACRLSRWDDRLFRKTIFGAADEIELKFVNR  121 (338)
Q Consensus        85 ~~ll~~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~  121 (338)
                      ...+..+.+.+.+.-.  ....+++.++.|.+.+..+
T Consensus       211 ~~~l~~~~~el~eik~--~~~~L~~~~e~Lk~~~~~e  245 (395)
T PF10267_consen  211 NLGLQKILEELREIKE--SQSRLEESIEKLKEQYQRE  245 (395)
T ss_pred             cchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            4456666666655433  3577888888888876654

Its function is unknown.

>COG3462 Predicted membrane protein [Function unknown]

Probab=80.56  E-value=6.4  Score=31.99  Aligned_cols=57  Identities=18%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHh--hhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 019594          213 DRSLRVTHNL----AVFGGCGVVLTVITG--LFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIA  272 (338)
Q Consensus       213 ~~~N~vmk~L----Tivs~IflPlT~ItG--ifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l~~  272 (338)
                      .+.|+...+|    ++++++-+.++.+.|  +|-||.-+|-|.   -||.|++.-+|.+++++.+.
T Consensus         3 k~ven~~w~ligliavi~~v~li~~~~~gg~~y~~gy~gm~GG---~yGm~lImpI~~~vvli~lv   65 (117)
T COG3462           3 KKVENFAWLLIGLIAVIAVVGLIPSGFHGGAFYPGGYRGMMGG---LYGMWLIMPIFWAVVLIFLV   65 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccCcccCCCccccccc---hhhhHHHHHHHHHHHHHHHH
Confidence            3444544444    444444444444433  444666556654   47888777776666554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2iub_A	363	CORA, divalent cation transport-related protein; m	4e-06
3ck6_A	252	Putative membrane transport protein; APC91421.1, Z	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 70/244 (28%)

Query: 122 RNLEDMNLFAIILNQEIRRL------SRQVIRVKWSLHAREEIVFELYQHLRGNVART-- 173
           ++++DM   +I+  +EI  +          +R+ W+L +++E   E+ Q     V R   
Sbjct: 36  KDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINY 91

Query: 174 --LLEGIRK--NAREMIEEQ-EAVRGRLFTIQDV----------MQSTVRAWLQDRSLRV 218
             L+  I+       M+       R RL+    V              +R  L    LR 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELRP 149

Query: 219 THNLAVFG--GCG-VVLTVIT------------GLFGINVDGIPGADNTPYAFGLFTAIL 263
             N+ + G  G G   + +               +F +N+       N+P          
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSP---------- 195

Query: 264 FFIGVVLIAVGLLYLGLKKPITE-----EQVEVRKLELQELVKKFQHEAETHAQ---VRK 315
                VL  +  L   +    T        +++R   +Q  +++     + +     V  
Sbjct: 196 ---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLL 251

Query: 316 NVRN 319
           NV+N
Sbjct: 252 NVQN 255

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 58/372 (15%), Positives = 105/372 (28%), Gaps = 108/372 (29%)

Query: 5   LYEVPVRVAGG-LLFELL---GQSAGDPFVDEDDIPIVLRSWQAQNFLITALHV--KGPV 58
           +      V+G   LF  L    +     FV+E     VLR      FL++ +    + P 
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----VLR--INYKFLMSPIKTEQRQP- 105

Query: 59  SSNNVLGITEVQEL-----LFVGGYNVPR--TVHEVIAHLACRLSRWDDRLFRKTIFG-- 109
           S    + I +   L     +F   YNV R     ++   L   L      +    I G  
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQAL-LELRP-AKNV---LIDGVL 159

Query: 110 -------AAD-----EIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREE 157
                  A D     +++ K        D  +F + L          V+ +   L  + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNCNS--PETVLEMLQKLLYQID 210

Query: 158 IVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR 217
             +        N+ +  +  I+   R +++ +      L  + +V          +    
Sbjct: 211 PNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENC-LLVLLNV-------Q--NAKA- 258

Query: 218 VTHNLAVFG-GCGVVLT-----VITGLFG-----INVDGIPGADNTPYAFGLFTAILFFI 266
                  F   C ++LT     V   L       I++D             L        
Sbjct: 259 ----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------- 307

Query: 267 GVVLIAVGLLYLGLKK---PITEEQVEVRKLELQ---ELVKKF--------QHEAETHAQ 312
                   L YL  +    P   E +      L    E ++              +    
Sbjct: 308 --------LKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 313 VRKNVRNNLTPT 324
           + ++  N L P 
Sbjct: 358 IIESSLNVLEPA 369

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Length = 363

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 29/177 (16%), Positives = 69/177 (38%), Gaps = 28/177 (15%)

Query: 112 DEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQHLRGNV- 170
           D +E + + R   E +        Q   +L R ++ ++ ++    E++  LY+ +   + 
Sbjct: 205 DVLEEEVLERPEKETV--------QRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIE 256

Query: 171 --ARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLR---VTHNLAVF 225
                    +  +  ++ +  E  R  +  + DV  S+V       S +   V   L + 
Sbjct: 257 KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSV-------SNKTNEVMKVLTII 309

Query: 226 GGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKK 282
               + LT I G++G+N + +P      + +         + V+ +   ++ +  KK
Sbjct: 310 ATIFMPLTFIAGIYGMNFEYMPELR-WKWGY------PVVLAVMGVIAVIMVVYFKK 359

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* Length = 252

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 18/180 (10%), Positives = 51/180 (28%), Gaps = 28/180 (15%)

Query: 31  DEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH 90
              +  + +R    Q  LI+   +    +   +       +        + + +  +   
Sbjct: 90  ASPEDMLSIRILYFQGALISTRKIPSR-AIMEIRQALAEHKGPKSLASLLNQIIEGLNGK 148

Query: 91  LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKW 150
           +   L   ++ L         +E ++   +  N                   + +I +K 
Sbjct: 149 IDLYLDTIEETL---------NEFDVNDESTYNHIA--------------AQKALISIKR 185

Query: 151 SLHAREEIVFELYQH---LRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV 207
            +  ++  + +L +    L  +             R + E  E   G +   QD ++   
Sbjct: 186 FIRPQQYAIRDLIESESELVTSRPHQYRFAHNNITR-INETIEFYLGEVALFQDEIKHNR 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
2iub_A	363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A	339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A	280	Magnesium transport protein CORA; magnesium transp	99.92
3ck6_A	252	Putative membrane transport protein; APC91421.1, Z	99.92
3nvo_A	264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.9
2bbh_A	269	Divalent cation transport-related protein; transpo	99.78
2hn1_A	266	CORA, magnesium and cobalt transporter; integral m	99.74
2iub_A	363	CORA, divalent cation transport-related protein; m	95.64
4ev6_A	339	Magnesium transport protein CORA; membrane protein	95.49
3nvo_A	264	Zinc transport protein ZNTB; alpha-beta-alpha sand	80.85

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=100.00  E-value=3.4e-46  Score=363.14  Aligned_cols=246  Identities=17%  Similarity=0.184  Sum_probs=200.0

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCC-CCCHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV-PRTVHEVIA   89 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ll~   89 (338)
                      .+++++|++++.+.. ++..+... +.+++||+++++|||+++.       +...++.+++++.++.+.. ..++..+++
T Consensus       113 ~~~~~lfivl~~~~~-~~~~~~~~-~~~v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~  183 (363)
T 2iub_A          113 FFENYVFIVLKMFTY-DKNLHELE-SEQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLY  183 (363)
T ss_dssp             EETTEEEEEEEEEEE-ETTTTEEE-EEEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHH
T ss_pred             EECCEEEEEEEeeee-cccccccc-eEEEEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHH
Confidence            489999999999876 33222112 3789999999999999997       6788999999998763112 347888999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL  166 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l  166 (338)
                      +|++.++|.|.+ +++.++++++++|++++.++.++        .+++|+.+||+++.+||++.|+++++.+|.+   ..
T Consensus       184 ~lld~ivd~y~~-~l~~l~~~id~lE~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~  254 (363)
T 2iub_A          184 SLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL  254 (363)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSS
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999999999999 99999999999999999876433        4789999999999999999999999999985   23


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI  246 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m  246 (338)
                      .+++.+.+++|+.||+.++.+.++.++++++.++|.+.|.+    |+++|++||+||++|+||+|||||||+|||||++|
T Consensus       255 ~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~i----s~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~m  330 (363)
T 2iub_A          255 IEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSV----SNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYM  330 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTSCC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Confidence            34568889999999999999999999999999999999998    89999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          247 PGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       247 P~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      ||++ |+||||+++++|+++++++    +.||++|+|
T Consensus       331 Pel~-~~~Gy~~~l~~m~~i~~~~----~~~Fkrk~W  362 (363)
T 2iub_A          331 PELR-WKWGYPVVLAVMGVIAVIM----VVYFKKKKW  362 (363)
T ss_dssp             ---------CHHHHHHHHHHHHHH----HTTTTSCC-
T ss_pred             Cccc-CcHHHHHHHHHHHHHHHHH----HHHHHHccc
Confidence            9999 9999999999998887643    566777776

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.1e-44  Score=349.49  Aligned_cols=244  Identities=18%  Similarity=0.209  Sum_probs=214.5

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC--CCCCHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVI   88 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~ll   88 (338)
                      .++++.|++++.+.. ++..+    +.++++|++++++||+|++       +...++++++++..++..  ..++++.++
T Consensus        91 ~~~~~~~iv~~~~~~-~~~~~----~~~v~i~l~~~~lITv~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  158 (339)
T 4ev6_A           91 EDEDFYLIIYKAPLF-EEDIT----TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLL  158 (339)
T ss_dssp             EETTEEEEECCCCCC-TTTCC----CCCCEEEEETTEEEEEESS-------CCHHHHHHHHHSSSSSSCCCCCSCHHHHH
T ss_pred             EECCEEEEEEecCcc-CCCcc----eEEEEEEEECCeeEEeecC-------CcchhHHHHHHHHcCCCccccccCHHHHH
Confidence            478999999998765 33222    3677999999999999987       788899999988765421  246789999


Q ss_pred             HHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---
Q 019594           89 AHLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---  165 (338)
Q Consensus        89 ~~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---  165 (338)
                      +++++.++|.|.+ +++.++++++++|++++.++.++        .+++|..+||++..+||++.|+++++..|.+.   
T Consensus       159 ~~lld~ivd~~~~-~l~~l~~~i~~lE~~l~~~~~~~--------~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~  229 (339)
T 4ev6_A          159 YHILNEITRSYSR-ILMNLEDELEELEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLP  229 (339)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHTSTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBT
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhh--------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Confidence            9999999999999 99999999999999999876543        57899999999999999999999999999862   


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 019594          166 LRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDG  245 (338)
Q Consensus       166 l~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~  245 (338)
                      ...++.+.+++|+.+++.++.+.++.+++.++.+.|.+.|.+    |+++|++||+||++|+||+|||||||+|||||++
T Consensus       230 ~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~i----s~~~N~~mk~LTiit~IflP~T~IaGiyGMNf~~  305 (339)
T 4ev6_A          230 ITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLE----NIKMNQIMKILTMVTTIFAVPMWITGIYGMNFSY  305 (339)
T ss_dssp             TBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCCCSC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCC
Confidence            335568899999999999999999999999999999999998    8999999999999999999999999999999999


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 019594          246 IPGADNTPYAFGLFTAILFFIGVVLIAVGLLYLGLKKPI  284 (338)
Q Consensus       246 mP~l~~~~~gf~~~~~imv~i~~~l~~~~~~~~~~~~~~  284 (338)
                      |||++ ||||||+++++|+++++++    +.||++|+|+
T Consensus       306 mPel~-~~~gy~~~l~~m~~~~~~~----~~~fkrk~WL  339 (339)
T 4ev6_A          306 LPLAN-NPQGFWLVMALMVVIIMIF----VYIFRRSGWI  339 (339)
T ss_dssp             CTTSS-CTTHHHHHHHHHHHHHHHH----HHHHHTTTCC
T ss_pred             CCCcc-CchHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence            99999 9999999999999888755    4467888774

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}

Probab=99.92  E-value=9.3e-24  Score=197.90  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=154.3

Q ss_pred             eCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC--CCCCHHHHHH
Q 019594           12 VAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN--VPRTVHEVIA   89 (338)
Q Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~ll~   89 (338)
                      ++++.|++++.+.. ++..   . +.+++||++++++||+++.       +...++.+++++..++..  ..+++..+++
T Consensus        92 ~~d~~fivl~~~~~-~~~~---~-t~~v~i~l~~~~lITv~~~-------~~~~~~~v~~~l~~~~~~~~~~~g~~~ll~  159 (280)
T 4egw_A           92 DEDFYLIIYKAPLF-EEDI---T-TTSLGIYIKNNLLLTIHSD-------KIKAIGRLHKLISTKKPRIVFERGIGFLLY  159 (280)
T ss_dssp             CSSSEEEEEEEEEC-SSSC---E-EEEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHHSCCSSSCTTTTTHHHH
T ss_pred             ECCEEEEEEEeccc-cccc---e-eeeEEEEEECCEEEEEecC-------CcchHHHHHHHHHhcCcccccccCHHHHHH
Confidence            78899999998775 4322   2 4789999999999999997       788999999999876522  1357889999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---h
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH---L  166 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~---l  166 (338)
                      +|++.++|.|.+ +++.++++++++|+.++.++.++        .+.+|+.+||+++.+||++.|+++++.+|.+.   .
T Consensus       160 ~lld~ivd~y~~-~l~~i~~~id~lE~~l~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~  230 (280)
T 4egw_A          160 HILNEITRSYSR-ILMNLEDELEELEDKLLAGYDRE--------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI  230 (280)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchh--------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCccc
Confidence            999999999999 99999999999999999876543        57899999999999999999999999999862   3


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTH  220 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk  220 (338)
                      ..++.+.+|+|+.+|+.++.+.++.+++.++.+.|.+.|.+    |++||++||
T Consensus       231 ~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~i----s~~~N~iMK  280 (280)
T 4egw_A          231 TTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLE----NIKMNQIMK  280 (280)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----C--------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhC
Confidence            45668999999999999999999999999999999999998    899999997

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*

Probab=99.92  E-value=8.1e-24  Score=195.02  Aligned_cols=179  Identities=15%  Similarity=0.180  Sum_probs=153.4

Q ss_pred             EeCC-eEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHH
Q 019594           11 RVAG-GLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIA   89 (338)
Q Consensus        11 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~   89 (338)
                      .+++ ++|++++++.. ++..++.+. ++++||+++++|||+++.       +...++.+++++.++.  .+.++.++++
T Consensus        71 ~~~d~~lfivl~~~~~-~~~~~~~~~-~~l~i~l~~~~lITvr~~-------~~~~~~~v~~~l~~~~--~~~~~~~ll~  139 (252)
T 3ck6_A           71 PLDDDNFMLILRGINM-NENASPEDM-LSIRILYFQGALISTRKI-------PSRAIMEIRQALAEHK--GPKSLASLLN  139 (252)
T ss_dssp             ECSTTCEEEEEEECCC-STTCCTTSC-EEEEEEEETTEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHH
T ss_pred             EeCCceEEEEEecCcc-CCCCCcccE-EEEEEEEeCCEEEEEeCC-------CcchHHHHHHHHHhCC--CCCCHHHHHH
Confidence            4889 99999999886 444334444 899999999999999997       7889999999998876  5689999999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--hc
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQH--LR  167 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~~--l~  167 (338)
                      +|++.++|+|.+ +++.++++++++|+.  .    +        .+.+|+.+||+++.+||++.|+++++.+|.+.  ..
T Consensus       140 ~lld~ivd~y~~-~l~~l~~~id~lE~~--~----~--------~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~  204 (252)
T 3ck6_A          140 QIIEGLNGKIDL-YLDTIEETLNEFDVN--D----E--------STYNHIAAQKALISIKRFIRPQQYAIRDLIESESEL  204 (252)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHTCCTT--C----G--------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHcC--c----h--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999 899999999999987  1    1        24689999999999999999999999999852  13


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594          168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVT  219 (338)
Q Consensus       168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vm  219 (338)
                      .++.+.+++|+.||+.++.+.+++++|++..++|.+.|.+    +++||++|
T Consensus       205 ~~~~~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~----s~~~N~~m  252 (252)
T 3ck6_A          205 VTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNR----DEKTNKNS  252 (252)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHccCC
Confidence            4457889999999999999999999999999999999998    88999876

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A

Probab=99.90  E-value=2.2e-22  Score=186.50  Aligned_cols=176  Identities=15%  Similarity=0.226  Sum_probs=147.4

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH   90 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~   90 (338)
                      .+++++|++++++.. ++..++.+. .+++||+++++|||+++.       +...++.+++++.++.  .+.++..++++
T Consensus        83 ~~~~~~fivl~~~~~-~~~~~~~~~-~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~--~~~~~~~ll~~  151 (264)
T 3nvo_A           83 RMGEGTLITLRCING-STDERPDQL-VAMRLYMDERFIVSTRQR-------KVLALDDVVSDLQEGT--GPVDCGGWLVD  151 (264)
T ss_dssp             EETTEEEEEEECC-----------C-CEEEEEECSSEEEEEESS-------CCHHHHHHHHHHHTTC--SCSSHHHHHHH
T ss_pred             EECCEEEEEEEeccc-CCCCCCcce-EEEEEEEeCCEEEEEecC-------CcCcHHHHHHHHHhCC--CCCCHHHHHHH
Confidence            489999999999886 444333343 899999999999999997       7889999999998886  56899999999


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594           91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR  167 (338)
Q Consensus        91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~  167 (338)
                      |++.++|+|.+ +++.++++++++|+.++.+ .++        .+.+|+.+||+++.+||++.|+++++.+|.+   ...
T Consensus       152 lld~ivd~y~~-~l~~l~~~id~lE~~l~~~-~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~  221 (264)
T 3nvo_A          152 VCDALTDHASE-FIEELHDKIIDLEDNLLDQ-QIP--------PRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWM  221 (264)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHTTC-----CCC--------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTS
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC-Cch--------hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccC
Confidence            99999999999 8999999999999999977 433        3679999999999999999999999999985   234


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594          168 GNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTV  207 (338)
Q Consensus       168 ~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~  207 (338)
                      .++.+.+++|+.+|+.++.+.++.+++++..++|.++|.+
T Consensus       222 ~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~d~~~s~~  261 (264)
T 3nvo_A          222 SDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVM  261 (264)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5668999999999999999999999999999999888775

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1

Probab=99.78  E-value=2.6e-18  Score=159.45  Aligned_cols=162  Identities=13%  Similarity=0.061  Sum_probs=111.2

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCC-CCCCHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYN-VPRTVHEVIA   89 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~ll~   89 (338)
                      .+++++|++++.+.. ++..+... +.+++||+++++|||+++.       +...++.+++++.++.+. ...++..+++
T Consensus       104 ~~~d~lfivl~~~~~-~~~~~~~~-~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~  174 (269)
T 2bbh_A          104 FFENYVFIVLKMFTY-DKNLHELE-SEQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLY  174 (269)
T ss_dssp             ECSSEEEEEEEEEEC-CC--CCCE-EEEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHH
T ss_pred             EECCEEEEEEEeeee-cCCcCcee-EEEEEEEEECCEEEEEECC-------CCCcHHHHHHHHHhcCCchhhCCHHHHHH
Confidence            488999999999876 43322112 3789999999999999997       678899999999876311 2357778999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL  166 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l  166 (338)
                      +|++.++|+|.+ +++.+++++++||+.++.++.++        .+.+|+.+||+++.+||++.|+++++.+|.+   ..
T Consensus       175 ~lld~ivd~y~~-~l~~i~~~id~lE~~v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~  245 (269)
T 2bbh_A          175 SLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL  245 (269)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999 99999999999999999876433        3679999999999999999999999999985   23


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQE  190 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~  190 (338)
                      .+++.+.+++|+.||+.++.+.++
T Consensus       246 ~~~~~~~~lrDv~dh~~r~~e~~e  269 (269)
T 2bbh_A          246 IEKETVPYFRDVYDHTIQIADTVE  269 (269)
T ss_dssp             TC----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC
Confidence            455688999999999999987653

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}

Probab=99.74  E-value=1.6e-17  Score=154.02  Aligned_cols=154  Identities=11%  Similarity=0.032  Sum_probs=130.7

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCCCCCHHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAH   90 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ll~~   90 (338)
                      .+++++|++++.+.. ++  .. . +.+++||+++++|||+++.       +...++.+++++.+++.....++..++++
T Consensus       109 ~~~d~lfivl~~~~~-~~--~~-~-~~~v~~~l~~~~lITv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~ll~~  176 (266)
T 2hn1_A          109 DYDDHLFLVLKILLY-NE--TL-E-IDQLSLVLKKNLVATFEER-------EYWILDSIRSRLKSGGRMRKLAGDYLAYT  176 (266)
T ss_dssp             ECSSEEEEEEEEEEE-SS--SE-E-EEEEEEEEETTEEEEEESS-------SSCSTHHHHHHHHSSSHHHHSCHHHHHHH
T ss_pred             EECCEEEEEEEeccc-cC--cc-c-eEEEEEEEECCEEEEEEcC-------CCChHHHHHHHHHhCCchhhcCHHHHHHH
Confidence            488999999999886 43  22 2 4788999999999999997       67889999999987631012678889999


Q ss_pred             HHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhc
Q 019594           91 LACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLR  167 (338)
Q Consensus        91 Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~  167 (338)
                      |++.++|.|.+ +++.+++++++||+.++.++. +.        +.+|+.+||+++.+||++.|+++++.+|.+   ...
T Consensus       177 lld~ivd~y~~-~l~~i~~~id~lE~~l~~~~~-~~--------l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~  246 (266)
T 2hn1_A          177 ILDAVVDSYFE-ALLKISDEIEVLEDEVVSGDS-TL--------IGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELI  246 (266)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTC-CC--------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH-HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence            99999999999 999999999999999998765 42        579999999999999999999999999985   233


Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 019594          168 GNVARTLLEGIRKNAREMI  186 (338)
Q Consensus       168 ~~~~~~~l~dv~d~~~~l~  186 (338)
                      .++.+.+++|+.||+.++.
T Consensus       247 ~~~~~~~lrDv~dh~~r~~  265 (266)
T 2hn1_A          247 GEEVKVYYRDVYDHAVRLM  265 (266)
T ss_dssp             CTTTHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            5568899999999998875

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A

Probab=95.64  E-value=1.4  Score=41.76  Aligned_cols=166  Identities=12%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  179 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~  179 (338)
                      .++.+..-++.+++++-.=...    ++    ...-....+++..+||.+...+..+..+..   .+........-.+..
T Consensus       189 ivd~y~~~l~~l~~~id~lE~~----v~----~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~  260 (363)
T 2iub_A          189 LVDDYFVLLEKIDDEIDVLEEE----VL----ERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETV  260 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH----TT----SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----Hh----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence            5677777788888776532110    00    001124456788888888888777766553   344322222235666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCch--HH
Q 019594          180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYA--FG  257 (338)
Q Consensus       180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~g--f~  257 (338)
                      ..++.+.+++..+.+.++.+.|...+..+..++...|+.=.++-++|++-+...-.|=+-|. |+ |=.-. -|.-  .|
T Consensus       261 ~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi-yG-MNf~~-mPel~~~~  337 (363)
T 2iub_A          261 PYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI-YG-MNFEY-MPELRWKW  337 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc-ccCCC-CCcccCcH
Confidence            77888999999999999999999999999999999999999999999999999999999996 55 76654 5653  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCC
Q 019594          258 LFTAILFFIGVVLIAVGLLYLGLKKP  283 (338)
Q Consensus       258 ~~~~imv~i~~~l~~~~~~~~~~~~~  283 (338)
                      ...+++    ++++.+++.-+..=|.
T Consensus       338 Gy~~~l----~~m~~i~~~~~~~Fkr  359 (363)
T 2iub_A          338 GYPVVL----AVMGVIAVIMVVYFKK  359 (363)
T ss_dssp             -CHHHH----HHHHHHHHHHHTTTTS
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHH
Confidence            333332    3345567766655443

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=95.49  E-value=0.24  Score=46.74  Aligned_cols=172  Identities=10%  Similarity=0.122  Sum_probs=112.2

Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hh
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HL  166 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l  166 (338)
                      .++..+.|   . .++.+..-++++++++..=...    ++    ...=....+++..+|+.+...+..+.....   .+
T Consensus       156 ~ll~~lld---~-ivd~~~~~l~~l~~~i~~lE~~----l~----~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L  223 (339)
T 4ev6_A          156 FLLYHILN---E-ITRSYSRILMNLEDELEELEDK----LL----AGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLL  223 (339)
T ss_dssp             HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHT----ST----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHh----hh----hhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            35555554   3 5677777888888876532110    00    011124566788888888777776655442   23


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019594          167 RGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLRVTHNLAVFGGCGVVLTVITGLFGINVDGI  246 (338)
Q Consensus       167 ~~~~~~~~l~dv~d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N~vmk~LTivs~IflPlT~ItGifGMNf~~m  246 (338)
                      ........-.+....++.+.+++..+.+.++...+...+..+..++...|+.=.++-++|++-+...-.|=+-|. |+ |
T Consensus       224 ~~~~~~~~~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi-yG-M  301 (339)
T 4ev6_A          224 KRKYLPITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI-YG-M  301 (339)
T ss_dssp             HHSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH-TT-C
T ss_pred             hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc-C
Confidence            222122223456677888999999999999999999999998889999999888888888888888888888886 54 7


Q ss_pred             CCCCCCCch--HHHHHHHHHHHHHHHHHHHHHHhcc
Q 019594          247 PGADNTPYA--FGLFTAILFFIGVVLIAVGLLYLGL  280 (338)
Q Consensus       247 P~l~~~~~g--f~~~~~imv~i~~~l~~~~~~~~~~  280 (338)
                      =.-. -|..  -|.+.+++    ++++.+++..+..
T Consensus       302 Nf~~-mPel~~~~gy~~~l----~~m~~~~~~~~~~  332 (339)
T 4ev6_A          302 NFSY-LPLANNPQGFWLVM----ALMVVIIMIFVYI  332 (339)
T ss_dssp             CCSC-CTTSSCTTHHHHHH----HHHHHHHHHHHHH
T ss_pred             cCCC-CCCccCchHHHHHH----HHHHHHHHHHHHH
Confidence            6544 5543  34454443    3344566665543

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A

Probab=80.85  E-value=8.3  Score=34.25  Aligned_cols=104  Identities=6%  Similarity=-0.041  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhcchhHHHHHHHHH
Q 019594          103 FRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIR  179 (338)
Q Consensus       103 ~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~---~l~~~~~~~~l~dv~  179 (338)
                      .++.+..-++++++++..=...         +...-....+++..+||.+...+..+.-+..   .+........-.+..
T Consensus       156 ivd~y~~~l~~l~~~id~lE~~---------l~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~  226 (264)
T 3nvo_A          156 LTDHASEFIEELHDKIIDLEDN---------LLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHR  226 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC-------------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HhcCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHH
Confidence            5677778888888877542211         1111123456789999999888887776653   454332222335667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019594          180 KNAREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSL  216 (338)
Q Consensus       180 d~~~~l~~~l~~~re~l~~l~d~~~s~~~~~~~~~~N  216 (338)
                      ..++.+.+++..+.+.++.+.|...++.. ..++++|
T Consensus       227 ~~l~Dv~d~~~~~~e~~~~~re~l~~l~d-~~~s~~~  262 (264)
T 3nvo_A          227 RRMQDIADRLGRGLDEIDACIARTGIMAD-EIAQVMQ  262 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Confidence            78889999999999999999888877763 3444454

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d2iuba2	64	f.17.3.1 (A:286-349) Magnesium transport protein C	2e-06

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 222 LAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVLIAV 273
           L +     + LT I G++G+N + +P      + + +  A++  I V+++  
Sbjct: 9   LTIIATIFMPLTFIAGIYGMNFEYMPELRW-KWGYPVVLAVMGVIAVIMVVY 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d2iuba2	64	Magnesium transport protein CorA {Thermotoga marit	99.85
d2bbha1	232	Magnesium transport protein CorA, soluble domain {	99.68

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.8e-22  Score=146.62  Aligned_cols=56  Identities=21%  Similarity=0.425  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 019594          214 RSLRVTHNLAVFGGCGVVLTVITGLFGINVDGIPGADNTPYAFGLFTAILFFIGVVL  270 (338)
Q Consensus       214 ~~N~vmk~LTivs~IflPlT~ItGifGMNf~~mP~l~~~~~gf~~~~~imv~i~~~l  270 (338)
                      |+|++||.||++|+||+|+|+|||+|||||+++|+.+ |+||||+++++++++++++
T Consensus         1 r~N~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~~-~~~~~~~~~~~~~~~~~~~   56 (64)
T d2iuba2           1 KTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVIM   56 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-ccHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999 9999999999988776644

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CorA soluble domain-like
superfamily: CorA soluble domain-like
family: CorA soluble domain-like
domain: Magnesium transport protein CorA, soluble domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=3.4e-16  Score=139.91  Aligned_cols=136  Identities=14%  Similarity=0.058  Sum_probs=111.8

Q ss_pred             EeCCeEEEEEeccccCCCCCCccccceEEEEEEeCCEEEEEeecCCCCCCCCcccHHHHHHHHHcCCCCC-CCCHHHHHH
Q 019594           11 RVAGGLLFELLGQSAGDPFVDEDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNV-PRTVHEVIA   89 (338)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~LITv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~ll~   89 (338)
                      +|++++|++++++.. +++....+. .++++|+++|++||+++.       +...++.+++++..+.+.. ..+++.+++
T Consensus        89 ~~~~~~fiil~~~~~-~~~~~~~~~-~~l~i~l~~~~lITv~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~ll~  159 (232)
T d2bbha1          89 FFENYVFIVLKMFTY-DKNLHELES-EQVSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLY  159 (232)
T ss_dssp             ECSSEEEEEEEEEEC-CC--CCCEE-EEEEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTGGGSCHHHHHH
T ss_pred             EeCCEEEEEEEeecc-cCCCCccee-EEEEEEEECCEEEEEecC-------CCchHHHHHHHHHhCccccccCCHHHHHH
Confidence            489999999999986 444333333 799999999999999987       7889999999998765222 357899999


Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019594           90 HLACRLSRWDDRLFRKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ  164 (338)
Q Consensus        90 ~Ll~~l~d~~~~~~~~~i~~~ld~LE~~v~~~~~~~~~~~L~~~~~~~I~~LRr~l~~lrr~l~~~~~vi~~L~~  164 (338)
                      .|++.++++|.+ +++.++++++++|+.++++++++        .+++|+.+||+++.+||++.|+++++..|.+
T Consensus       160 ~lld~ivd~y~~-~l~~l~~~id~lE~~v~~~~~~~--------~l~~i~~lrr~l~~lrr~l~p~revl~~L~r  225 (232)
T d2bbha1         160 SLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYR  225 (232)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCcHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999999876544        4689999999999999999999999999985