Citrus Sinensis ID: 019606

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MLGMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDEAEPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFFRNADDELQRQTRSPEAGA
cccccHHHHHHccccccHHHHHcccccEEEEEccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEEccccccccccEEEccccccEEccHHHHHHHHHHcHHHHHHHHHHHHccccccccccccEEEEEEccccccccccEEEEEEEccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHcccccccEEEEEcccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHcccccccc
cccccHHHHHHcccHHHHHHHHcccccEEEEcccHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEccccccccccccEEEcccccEEEccHHHHHHHEcccccHHHHHHHHHHccccccccccccEEEEEEccccccccccEEEEEEEccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccEEEEEccccccccccccEcHHHHHHHccccccccEEEEEcccccccccccccccHHHEEcccccHHHHHHHHHHHHHHHHcccccccc
MLGMTEEEVNRcqiqewypkfksVSIRTLIHELPEYFVEYLlddsgpfllpasvsnddalpnrihnafeeedyrvsegsgdeaepssppsfpelELKIKESIESlggavfpklnwsapkdaawistsgtlrctSFCEIVLLLRSSDSLVHDLCHAydscndktltrppsFFLALRKwypslrpemefrcfvrgrclvgisqrevtmcypalsekKNDIKVLIQELFDsnvrqefesenytfdvyvtkdervkildfnpwgaftlPLLFAWEELQQnvgeegddVEFRIVESqcavrpglktavpydyldtkpgsgwdqfFRNADDElqrqtrspeaga
MLGMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDEAEPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDscndktltrPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDsnvrqefesenytfdvyvTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESqcavrpglktavpYDYLDTKPGSGWDQFFRNADDELqrqtrspeaga
MLGMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDeaepssppsfpeleLKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFFRNADDELQRQTRSPEAGA
*********NRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPA*************************************************IESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFF******************
**GMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLP**************************************SFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCN***LTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVES*********TAVPYDYLDTKPGSGWDQFF******************
*********NRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEE*******************FPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFFRNADDE************
MLGMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPA***********************************PPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFFRNADDELQ**********
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MLGMTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDEAEPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYDYLDTKPGSGWDQFFRNADDELQRQTRSPEAGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q641C9338 Cell division cycle prote N/A no 0.899 0.899 0.392 4e-58
A7RFT2329 Cell division cycle prote N/A no 0.934 0.960 0.393 4e-58
Q5BKN5335 Cell division cycle prote yes no 0.902 0.910 0.377 4e-56
Q62834336 Cell division cycle prote yes no 0.896 0.901 0.383 2e-55
Q8CII2336 Cell division cycle prote yes no 0.896 0.901 0.374 1e-54
O75794336 Cell division cycle prote yes no 0.899 0.904 0.369 2e-54
Q2PG37336 Cell division cycle prote N/A no 0.899 0.904 0.366 2e-53
Q2YDG3335 Cell division cycle prote yes no 0.899 0.907 0.364 2e-53
Q6PC40348 Cell division cycle prote yes no 0.902 0.876 0.360 3e-53
Q75JF9384 Cell division cycle prote yes no 0.881 0.776 0.336 1e-50
>sp|Q641C9|CD123_XENLA Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1 Back     alignment and function desciption
 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 186/321 (57%), Gaps = 17/321 (5%)

Query: 4   MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNR 63
           M +E+V  CQ  +WYP FK  SIR++I  LPE   +YLLDD    L+ +          R
Sbjct: 1   MKKEQVLNCQFGQWYPTFKKFSIRSVIIPLPENVKDYLLDDGT--LVVSGREESPGCSQR 58

Query: 64  IHNAFEEEDYRVSEGSGDEAEPS-SPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAA 122
             N  EE++ + S+   DE+  + + P FPE  +K++E+I SLGG+VFPKLNWS+P+DA 
Sbjct: 59  DLNCTEEDEVQWSD---DESTATLTAPEFPEFSIKVQEAINSLGGSVFPKLNWSSPRDAY 115

Query: 123 WISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182
           WI+ + +L+CT+  +I LL +SSD + HD    +  C D +      + L LRKW   L 
Sbjct: 116 WIALNSSLKCTTLSDIFLLFKSSDFVTHDFTQPFIYCADDSPDPNIKYELVLRKWC-ELI 174

Query: 183 PEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFD 242
           P  EFRCFVR   L+GISQR+ T  Y  +S++K +I+  IQ  F  +++  F  E++ FD
Sbjct: 175 PGAEFRCFVRENKLIGISQRDYTQYYDHISKQKEEIRKSIQYFFQEHIQYNFPDEDFVFD 234

Query: 243 VYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVE--------FRIVESQCA 294
           +Y     ++ ++DFNP+G  T  LLF WEEL++N+ +   DVE        FR    +  
Sbjct: 235 IYKDSQGKIWLIDFNPFGEVTDSLLFTWEELRRNLCDVPGDVENEDQDCPTFRYTNREVT 294

Query: 295 VRPG--LKTAVPYDYLDTKPG 313
           V+P   L   +P D++D   G
Sbjct: 295 VQPSPYLSYRLPKDFVDLSTG 315
Required for S phase entry of the cell cycle.
Xenopus laevis (taxid: 8355)
>sp|A7RFT2|CD123_NEMVE Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1 Back     alignment and function description
>sp|Q5BKN5|CD123_XENTR Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1 Back     alignment and function description
>sp|Q62834|CD123_RAT Cell division cycle protein 123 homolog OS=Rattus norvegicus GN=Cdc123 PE=1 SV=1 Back     alignment and function description
>sp|Q8CII2|CD123_MOUSE Cell division cycle protein 123 homolog OS=Mus musculus GN=Cdc123 PE=2 SV=2 Back     alignment and function description
>sp|O75794|CD123_HUMAN Cell division cycle protein 123 homolog OS=Homo sapiens GN=CDC123 PE=1 SV=1 Back     alignment and function description
>sp|Q2PG37|CD123_MACFA Cell division cycle protein 123 homolog OS=Macaca fascicularis GN=CDC123 PE=2 SV=1 Back     alignment and function description
>sp|Q2YDG3|CD123_BOVIN Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1 Back     alignment and function description
>sp|Q6PC40|CD123_DANRE Cell division cycle protein 123 homolog OS=Danio rerio GN=cdc123 PE=2 SV=1 Back     alignment and function description
>sp|Q75JF9|CD123_DICDI Cell division cycle protein 123 homolog OS=Dictyostelium discoideum GN=cdc123 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
147779745336 hypothetical protein VITISV_026936 [Viti 0.991 0.997 0.821 1e-159
225465361385 PREDICTED: cell division cycle protein 1 0.988 0.867 0.814 1e-157
224095875336 predicted protein [Populus trichocarpa] 0.991 0.997 0.794 1e-154
255563222337 Cell division cycle protein, putative [R 0.988 0.991 0.791 1e-153
225443994338 PREDICTED: cell division cycle protein 1 0.991 0.991 0.795 1e-152
356551359332 PREDICTED: cell division cycle protein 1 0.982 1.0 0.782 1e-152
388511599335 unknown [Lotus japonicus] 0.988 0.997 0.744 1e-146
357456087338 Cell division cycle protein-like protein 0.997 0.997 0.737 1e-143
357470833338 Cell division cycle protein-like protein 0.997 0.997 0.740 1e-138
296085417355 unnamed protein product [Vitis vinifera] 0.899 0.856 0.743 1e-137
>gi|147779745|emb|CAN76115.1| hypothetical protein VITISV_026936 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/336 (82%), Positives = 298/336 (88%), Gaps = 1/336 (0%)

Query: 4   MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNR 63
           M +EEVN CQIQEWYPKFKSVSI+TLIHELPE FVEYLLDD GPFLLPASV N+DALPNR
Sbjct: 1   MKQEEVNLCQIQEWYPKFKSVSIKTLIHELPESFVEYLLDDHGPFLLPASVINEDALPNR 60

Query: 64  IHNAFEEEDYRVSEGSGDEAE-PSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAA 122
           IHN  EEEDY+VSEGSGDEAE P SPPSFPELELKIKESIESLGGAVFPKLNWSAPKD+A
Sbjct: 61  IHNXEEEEDYQVSEGSGDEAEQPPSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDSA 120

Query: 123 WISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLR 182
           WIST+GTLRCTSF EI LLLRSSDSL+HDLCHAYDSC+DK+L+RPP+F+LALRKWYPSLR
Sbjct: 121 WISTTGTLRCTSFSEIALLLRSSDSLIHDLCHAYDSCSDKSLSRPPNFYLALRKWYPSLR 180

Query: 183 PEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFD 242
           PEMEFRCFVR R LVGISQREVT  YPAL EKK+ ++V+I+E F   V Q FE ENYTFD
Sbjct: 181 PEMEFRCFVRDRLLVGISQREVTGFYPALLEKKSALEVVIREFFMDKVSQTFELENYTFD 240

Query: 243 VYVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTA 302
           VYVT D+RVK++DFNPWGAFTLPLLF WEEL+Q   EEG  VEFRIVESQ AVRPGLKTA
Sbjct: 241 VYVTMDDRVKLVDFNPWGAFTLPLLFTWEELEQXCAEEGHGVEFRIVESQSAVRPGLKTA 300

Query: 303 VPYDYLDTKPGSGWDQFFRNADDELQRQTRSPEAGA 338
           VPYDYL T PGSGWDQF RNAD EL+RQ RSPEAG 
Sbjct: 301 VPYDYLATGPGSGWDQFLRNADQELERQIRSPEAGG 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465361|ref|XP_002276138.1| PREDICTED: cell division cycle protein 123 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224095875|ref|XP_002310498.1| predicted protein [Populus trichocarpa] gi|222853401|gb|EEE90948.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563222|ref|XP_002522614.1| Cell division cycle protein, putative [Ricinus communis] gi|223538090|gb|EEF39701.1| Cell division cycle protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225443994|ref|XP_002274599.1| PREDICTED: cell division cycle protein 123 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551359|ref|XP_003544043.1| PREDICTED: cell division cycle protein 123 homolog [Glycine max] Back     alignment and taxonomy information
>gi|388511599|gb|AFK43861.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357456087|ref|XP_003598324.1| Cell division cycle protein-like protein [Medicago truncatula] gi|355487372|gb|AES68575.1| Cell division cycle protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357470833|ref|XP_003605701.1| Cell division cycle protein-like protein [Medicago truncatula] gi|355506756|gb|AES87898.1| Cell division cycle protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|296085417|emb|CBI29149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2115929333 EDA35 "AT4G05440" [Arabidopsis 0.976 0.990 0.605 1.1e-108
DICTYBASE|DDB_G0276129384 cdc123 "cell division cycle pr 0.547 0.481 0.449 3.3e-54
RGD|619766336 Cdc123 "cell division cycle 12 0.899 0.904 0.372 8.3e-51
MGI|MGI:2138811336 Cdc123 "cell division cycle 12 0.899 0.904 0.372 1.3e-50
UNIPROTKB|E1BTR2335 CDC123 "Uncharacterized protei 0.890 0.898 0.379 2.8e-50
UNIPROTKB|E2RAV1336 CDC123 "Uncharacterized protei 0.899 0.904 0.372 3.6e-50
UNIPROTKB|O75794336 CDC123 "Cell division cycle pr 0.899 0.904 0.360 4.6e-50
ZFIN|ZDB-GENE-040426-1680348 cdc123 "cell division cycle 12 0.899 0.873 0.362 2e-49
UNIPROTKB|Q2YDG3335 CDC123 "Cell division cycle pr 0.899 0.907 0.355 6.7e-49
POMBASE|SPAP27G11.03319 SPAP27G11.03 "D123 family prot 0.656 0.695 0.371 5.2e-41
TAIR|locus:2115929 EDA35 "AT4G05440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1074 (383.1 bits), Expect = 1.1e-108, P = 1.1e-108
 Identities = 201/332 (60%), Positives = 251/332 (75%)

Query:     4 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNR 63
             M E+EVNRCQIQ WYP+FKS++I+T  H+LPE F+ YL+DDSGPFLLP SV+N+DA+PNR
Sbjct:     1 MKEDEVNRCQIQNWYPRFKSLTIKTKFHKLPESFINYLIDDSGPFLLPHSVTNEDAMPNR 60

Query:    64 IHNAFEEEDYRVSEGSGDXXXXXXXXXXXXXXLKIKESIESLGGAVFPKLNWSAPKDAAW 123
             +HN  EE+D++V E + D              ++I+ESIE+LGG + PKLNWS+PKDAAW
Sbjct:    61 VHNFEEEDDFQVPEEASDDEPLNRPSFPELE-IEIRESIETLGGTIIPKLNWSSPKDAAW 119

Query:   124 ISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRP 183
             IS S  L CT F EI LL RSSDSL HDL +AYDSC+DK  +RP SF+LALRKWYPSL+P
Sbjct:   120 ISPSQNLSCTCFNEIALLFRSSDSLTHDLFNAYDSCSDKVSSRPESFYLALRKWYPSLKP 179

Query:   184 EMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDV 243
             EMEFRCFV+   LVGI QREVT  YP L  +K+ +K LI+E FD  +R EFESENYTFDV
Sbjct:   180 EMEFRCFVKSNELVGICQREVTTFYPVLLNEKDLLKGLIEEFFDDKIRFEFESENYTFDV 239

Query:   244 YVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAV 303
             YVTK+ RVK++DFN W   TLPL++ WEEL++  GE  D++E RIVES+ +V PGLKTAV
Sbjct:   240 YVTKERRVKLIDFNTWCGSTLPLMYTWEELEKIHGE-CDELELRIVESRLSVLPGLKTAV 298

Query:   304 PYDYLDTKPGSGWDQFFRNADDELQRQTRSPE 335
             PYDYLD   GSGW Q  +  ++E Q+  +S +
Sbjct:   299 PYDYLDVSAGSGWAQVLKIVEEEFQKDDQSSD 330
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0006457 "protein folding" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
DICTYBASE|DDB_G0276129 cdc123 "cell division cycle protein 123" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|619766 Cdc123 "cell division cycle 123" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2138811 Cdc123 "cell division cycle 123" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTR2 CDC123 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAV1 CDC123 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O75794 CDC123 "Cell division cycle protein 123 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1680 cdc123 "cell division cycle 123 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2YDG3 CDC123 "Cell division cycle protein 123 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPAP27G11.03 SPAP27G11.03 "D123 family protein" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q62834CD123_RATNo assigned EC number0.38390.89640.9017yesno
Q9P7N5CD123_SCHPONo assigned EC number0.32140.88160.9341yesno
Q6PC40CD123_DANRENo assigned EC number0.36020.90230.8764yesno
Q5BKN5CD123_XENTRNo assigned EC number0.37730.90230.9104yesno
Q6FNU7CD123_CANGANo assigned EC number0.35310.89940.8563yesno
Q8CII2CD123_MOUSENo assigned EC number0.37460.89640.9017yesno
O75794CD123_HUMANNo assigned EC number0.36950.89940.9047yesno
Q2YDG3CD123_BOVINNo assigned EC number0.36440.89940.9074yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VII000317
hypothetical protein (336 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
pfam07065295 pfam07065, D123, D123 1e-108
>gnl|CDD|219285 pfam07065, D123, D123 Back     alignment and domain information 
 Score =  317 bits (814), Expect = e-108
 Identities = 135/300 (45%), Positives = 177/300 (59%), Gaps = 14/300 (4%)

Query: 17  WYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVS 76
           WY  FK  +I++ I  LPE F+EYLL D    LLP+  S+         N + +      
Sbjct: 1   WYELFKKHTIKSKIIPLPEEFLEYLLQDG--ILLPSEESSLPIYQESSDNEYSDW----F 54

Query: 77  EGSGDEAEPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFC 136
           E   DE    + P FPEL  KI+E+IE LGGAVFPKLNWSAPKDA WI  + +L+C +  
Sbjct: 55  EDDDDEDTDVTRPEFPELHQKIREAIEELGGAVFPKLNWSAPKDATWILPNNSLKCRTLS 114

Query: 137 EIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCL 196
           ++ LLL+SSD + HDL +A+D C D +     S+ L LRKWY  L P +EFRCFV+   L
Sbjct: 115 DVYLLLKSSDFITHDLTNAFDECIDDSPDPSISYELVLRKWY-DLNPALEFRCFVKNNKL 173

Query: 197 VGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDE-RVKILD 255
           VGISQR++   Y  L+E K DIK  IQE F+  +   F  ++Y FDVY+ +   +V ++D
Sbjct: 174 VGISQRDLNY-YEYLAELKEDIKDAIQEFFEEKILDHFPDDDYVFDVYIPRPFDKVWLID 232

Query: 256 FNPWGAFTLPLLFAWEELQQNVGE-EGDDVEFRIVE--SQCAVRPGLKT--AVPYDYLDT 310
           FNP+G  T PLLF WEEL       E DD EFR+VE  +   V P   +   VP D +D 
Sbjct: 233 FNPFGRHTDPLLFTWEELDSINAASEEDDPEFRLVEENNAVGVAPKEYSENRVPLDLVDA 292

This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate. D123 proteins are regulators of eIF2, the central regulator of translational initiation. Length = 295

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
KOG2983334 consensus Uncharacterized conserved protein [Funct 100.0
PF07065299 D123: D123; InterPro: IPR009772 This family contai 100.0
PF14243130 DUF4343: Domain of unknown function (DUF4343) 98.14
TIGR00768277 rimK_fam alpha-L-glutamate ligases, RimK family. T 96.84
PF08443190 RimK: RimK-like ATP-grasp domain; InterPro: IPR013 96.77
PRK01372304 ddl D-alanine--D-alanine ligase; Reviewed 96.17
TIGR02144280 LysX_arch Lysine biosynthesis enzyme LysX. The fam 96.14
PF13535184 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 95.24
TIGR01205315 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a 94.48
PRK10446300 ribosomal protein S6 modification protein; Provisi 94.08
PRK05586447 biotin carboxylase; Validated 93.89
PRK01966333 ddl D-alanyl-alanine synthetase A; Reviewed 93.69
PRK08463 478 acetyl-CoA carboxylase subunit A; Validated 93.47
PF07478203 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In 93.36
PRK14569296 D-alanyl-alanine synthetase A; Provisional 92.24
PRK14570364 D-alanyl-alanine synthetase A; Provisional 91.86
PRK07178 472 pyruvate carboxylase subunit A; Validated 90.77
PRK08591451 acetyl-CoA carboxylase biotin carboxylase subunit; 90.57
TIGR00514449 accC acetyl-CoA carboxylase, biotin carboxylase su 90.21
PRK06111450 acetyl-CoA carboxylase biotin carboxylase subunit; 89.69
PRK14572347 D-alanyl-alanine synthetase A; Provisional 89.45
PRK08462445 biotin carboxylase; Validated 88.11
TIGR02068 864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 86.63
PRK14573809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 86.57
PLN02941328 inositol-tetrakisphosphate 1-kinase 85.97
TIGR01142380 purT phosphoribosylglycinamide formyltransferase 2 85.91
PRK06849389 hypothetical protein; Provisional 85.78
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 84.9
TIGR01161352 purK phosphoribosylaminoimidazole carboxylase, Pur 84.81
PRK06019372 phosphoribosylaminoimidazole carboxylase ATPase su 83.17
PRK12833467 acetyl-CoA carboxylase biotin carboxylase subunit; 81.9
PF15585129 Imm46: Immunity protein 46 81.21
PF02655161 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 80.87
PRK12999 1146 pyruvate carboxylase; Reviewed 80.57
>KOG2983 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-101  Score=715.29  Aligned_cols=320  Identities=48%  Similarity=0.848  Sum_probs=289.3

Q ss_pred             CCHHHHhhccccccchhccCCCccceeecCCHhHHHHHhcCCCCeEcCCCCCCCCCCCcCCCCCCCccccccCCCCCCCC
Q 019606            4 MTEEEVNRCQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFLLPASVSNDDALPNRIHNAFEEEDYRVSEGSGDEA   83 (338)
Q Consensus         4 ~~~~~v~~C~~~~WY~~fk~~t~ks~ii~Lp~~fl~YL~sDg~~i~LP~~~~~~~~~~~~~~~~~~~~d~~~~e~~d~e~   83 (338)
                      ||++||++||||+|||.||++|||++++|||+.|++||..||  |.||.+..+.++++.+++..++++ +++||+++ +.
T Consensus         1 mkk~qV~hCqfs~Wy~lfrklt~Ks~vl~lP~~fi~YL~dDg--i~lpq~~n~~~~~~e~v~~~E~~d-d~qwedde-dt   76 (334)
T KOG2983|consen    1 MKKDQVLHCQFSNWYPLFRKLTIKSKVLPLPESFINYLIDDG--ILLPQSVNNEDAMPEEVHNFEEED-DSQWEDDE-DT   76 (334)
T ss_pred             CchhhhhheeeehhhhhhccccccceEeeCcHHHHHHhHhcc--eeccccCCCCccCccccccccccc-cccccccc-cc
Confidence            799999999999999999999999999999999999999999  999999888778888877655544 55664332 23


Q ss_pred             CCCCCCCchhHHHHHHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCC
Q 019606           84 EPSSPPSFPELELKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKT  163 (338)
Q Consensus        84 ~~~~~~~Fpel~~~I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~  163 (338)
                      .+...|+||||+++|++||++|||+|+|||||||||||.||++|+||+|++++||+||||||++|+|||.+||++|.|..
T Consensus        77 at~~~pe~~El~qki~eaineLGgaV~PKLNWSaPrDA~WI~pn~slkCt~~nei~LLfksSdfithDl~~af~~C~D~d  156 (334)
T KOG2983|consen   77 ATLNRPEFPELEQKIREAINELGGAVIPKLNWSAPRDAAWISPNQSLKCTTFNEIALLFKSSDFITHDLFNAFDSCSDKD  156 (334)
T ss_pred             ccccccchHHHHHHHHHHHHHccceecccccCCCCCcceeeccCCCcccccHHHHHHHHhcchHHHHHHhhhhcccccCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCCCCceEEEEeccCCCCCCCceEEEEEeCCeEEEEeeCCccccchhhhccHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Q 019606          164 LTRPPSFFLALRKWYPSLRPEMEFRCFVRGRCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDV  243 (338)
Q Consensus       164 ~~~~~~~~LvLrkW~~~i~ps~EFRcFV~~~~LiaISQr~~~~~y~~L~~~~~~i~~~I~~F~~~~i~~~~~~~~yv~DV  243 (338)
                      ..++..++||||||+ .|+|++||||||++++|||||||+.++||++|.++++.++..|.+||.++|..+||..+|||||
T Consensus       157 s~~~~sfeLvLrkWc-~l~p~~EFRcFVKsn~lvg~~QRd~tnyYd~l~e~kd~~k~lI~eff~d~i~~kF~dedfvfDV  235 (334)
T KOG2983|consen  157 SSDPESFELVLRKWC-PLKPEMEFRCFVKSNELVGICQRDVTNYYDVLLEEKDLLKGLIEEFFKDKILFKFPDEDFVFDV  235 (334)
T ss_pred             CCCcceehhhHhhhc-CCCcCceEEEEEeccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCeeEEE
Confidence            657789999999999 7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcEEEEEecCCCCCcCCCccchHHHhhhcCCCC--CcceEEEecCC----CccCCCCCCCcchhhhhcCCCC-CH
Q 019606          244 YVTKDERVKILDFNPWGAFTLPLLFAWEELQQNVGEEG--DDVEFRIVESQ----CAVRPGLKTAVPYDYLDTKPGS-GW  316 (338)
Q Consensus       244 yi~~~~~v~LID~NPf~~~Td~lLFsW~el~~~~~~~~--~~~efR~v~~~----~~~~~~~~~~vP~D~vd~s~g~-~~  316 (338)
                      ||++.+||||||||||+++||+|||+|+||..+....+  .++|+|+|+.+    .+..+|+.|+||.|+|++|.|+ +.
T Consensus       236 Yi~k~~kv~lID~Npf~~~TdsLlftWeEl~si~~~e~D~ed~elrlv~~~s~~sv~~~~y~~n~vP~D~vdaS~g~e~~  315 (334)
T KOG2983|consen  236 YITKERKVWLIDFNPFCGSTDSLLFTWEELESINGPENDVEDYELRLVPRHSRLSVLPGEYLKNRVPYDYVDASAGSEQV  315 (334)
T ss_pred             EecCCCcEEEEeccCccCccccceeeHHHHHhhcCCcccccchhheecccCCccccccchhhhccCCHHHHhhccCHHHH
Confidence            99999999999999999999999999999999876333  56799999855    3455678999999999999994 46


Q ss_pred             HHHHHHHHHHHH
Q 019606          317 DQFFRNADDELQ  328 (338)
Q Consensus       317 ~~~~~~~~~~~~  328 (338)
                      -++.++.++-..
T Consensus       316 ~kl~qk~k~~~n  327 (334)
T KOG2983|consen  316 LKLVQKWKQKDN  327 (334)
T ss_pred             HHHHHHHHHHhc
Confidence            666666655544

>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long Back     alignment and domain information
>PF14243 DUF4343: Domain of unknown function (DUF4343) Back     alignment and domain information
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family Back     alignment and domain information
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK [] Back     alignment and domain information
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX Back     alignment and domain information
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A Back     alignment and domain information
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase Back     alignment and domain information
>PRK10446 ribosomal protein S6 modification protein; Provisional Back     alignment and domain information
>PRK05586 biotin carboxylase; Validated Back     alignment and domain information
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed Back     alignment and domain information
>PRK08463 acetyl-CoA carboxylase subunit A; Validated Back     alignment and domain information
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6 Back     alignment and domain information
>PRK14569 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK14570 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK07178 pyruvate carboxylase subunit A; Validated Back     alignment and domain information
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit Back     alignment and domain information
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated Back     alignment and domain information
>PRK14572 D-alanyl-alanine synthetase A; Provisional Back     alignment and domain information
>PRK08462 biotin carboxylase; Validated Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PLN02941 inositol-tetrakisphosphate 1-kinase Back     alignment and domain information
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 Back     alignment and domain information
>PRK06849 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein Back     alignment and domain information
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed Back     alignment and domain information
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional Back     alignment and domain information
>PF15585 Imm46: Immunity protein 46 Back     alignment and domain information
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule [] Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 52/360 (14%), Positives = 99/360 (27%), Gaps = 88/360 (24%)

Query: 6   EEEVNR-CQIQEWYPKFKSVSIRTLIHELPEYFVEYLLDDSGPFL------------LPA 52
            E+ +R     + + K+ +VS      +L +  +E         +            +  
Sbjct: 113 IEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKTWVAL 168

Query: 53  SVSNDDAL----PNRIH-----NAFEEED---------YRVSEGSGDEAEPSSPPSFPEL 94
            V     +      +I      N    E          Y++       ++ SS       
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 95  ELKIKESIESLGGAVFPK----LN--WSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSL 148
            ++ +     L    +      L    +A         +  L C       +LL +    
Sbjct: 229 SIQAELR-RLLKSKPYENCLLVLLNVQNA-----KAWNAFNLSCK------ILLTTRFKQ 276

Query: 149 VHDL------CHAYDSCNDKTLTRPPSFFLALRKW----YPSLRPEMEFRCFVRGRCLVG 198
           V D        H     +  TLT      L L K+       L  E+      R   ++ 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVL-TTNPRRLSIIA 334

Query: 199 ISQREVTMC-----YPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYVTKDERVKI 253
            S R+         +    +    I+  +  L  +  R+ F+       V+        I
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----LSVF---PPSAHI 387

Query: 254 LDFNPWGAFTLPLLFAWEELQQNVGEEGDDVEFRIVESQCAVRPGLKTAVPYD-YLDTKP 312
               P     L L+  W ++ ++  +    V      S    +P   T      YL+ K 
Sbjct: 388 ----P--TILLSLI--WFDVIKS--DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
1iow_A306 DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho 95.84
4eg0_A317 D-alanine--D-alanine ligase; structural genomics, 95.79
1uc8_A280 LYSX, lysine biosynthesis enzyme; alpha-aminoadipa 95.36
2q7d_A346 Inositol-tetrakisphosphate 1-kinase; inositol kina 95.19
3r5x_A307 D-alanine--D-alanine ligase; alpha-beta structure, 94.79
3k3p_A383 D-alanine--D-alanine ligase; D-alanyl-alanine synt 94.55
3se7_A346 VANA; alpha-beta structure, D-alanine-D-lactate li 94.41
2i87_A364 D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco 94.24
1z2n_X324 Inositol 1,3,4-trisphosphate 5/6-kinase; inositol 94.22
4fu0_A357 D-alanine--D-alanine ligase 7; vancomycin resistan 93.64
3e5n_A386 D-alanine-D-alanine ligase A; bacterial blight; 2. 93.46
3i12_A364 D-alanine-D-alanine ligase A; D-alanyl-alanine syn 93.24
3tqt_A372 D-alanine--D-alanine ligase; cell envelope; 1.88A 93.08
1ehi_A377 LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g 92.92
1ulz_A451 Pyruvate carboxylase N-terminal domain; biotin car 92.6
2vpq_A451 Acetyl-COA carboxylase; bacteria, ATP-grAsp domain 91.32
2dzd_A461 Pyruvate carboxylase; biotin carboxylase, ligase; 90.82
2pvp_A367 D-alanine-D-alanine ligase; 2.40A {Helicobacter py 90.65
3ouz_A446 Biotin carboxylase; structural genomics, center fo 90.65
4dim_A403 Phosphoribosylglycinamide synthetase; structural g 90.4
3vmm_A474 Alanine-anticapsin ligase BACD; ATP-grAsp domain, 90.31
2w70_A449 Biotin carboxylase; ligase, ATP-binding, fatty aci 90.17
3lwb_A373 D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan 88.7
3vot_A425 L-amino acid ligase, BL00235; ATP-grAsp motif, ATP 87.1
2fb9_A322 D-alanine:D-alanine ligase; 1.90A {Thermus caldoph 87.0
1e4e_A343 Vancomycin/teicoplanin A-type resistance protein; 85.26
2ip4_A417 PURD, phosphoribosylamine--glycine ligase; GAR syn 84.61
3jrx_A 587 Acetyl-COA carboxylase 2; BC domain, soraphen A, a 83.48
1w96_A 554 ACC, acetyl-coenzyme A carboxylase; ligase, obesit 83.29
3q2o_A389 Phosphoribosylaminoimidazole carboxylase, ATPase; 82.55
3glk_A540 Acetyl-COA carboxylase 2; ATP binding, alternative 81.49
1gsa_A316 Glutathione synthetase; ligase; HET: ADP GSH; 2.00 80.34
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Back     alignment and structure
Probab=95.84  E-value=0.12  Score=46.91  Aligned_cols=133  Identities=18%  Similarity=0.182  Sum_probs=81.7

Q ss_pred             HHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEeccCCC
Q 019606          101 SIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPS  180 (338)
Q Consensus       101 aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW~~~  180 (338)
                      +++++|..|+.|-...+-.       .+..+|++.+|+...++.          ++.          ....+++-+|. +
T Consensus       133 ~~~~~~~p~vvKP~~g~~~-------~gv~~v~~~~el~~~~~~----------~~~----------~~~~~lvee~i-~  184 (306)
T 1iow_A          133 EISALGLPVIVKPSREGSS-------VGMSKVVAENALQDALRL----------AFQ----------HDEEVLIEKWL-S  184 (306)
T ss_dssp             HHHTTCSSEEEEETTCCTT-------TTCEEESSGGGHHHHHHH----------HTT----------TCSEEEEEECC-C
T ss_pred             HHhccCCCEEEEeCCCCCC-------CCEEEeCCHHHHHHHHHH----------HHh----------hCCCEEEEeCc-C
Confidence            6778887899997665521       244678877776544321          110          11356778887 3


Q ss_pred             CCCCceEEEEEeCCeEEEEeeCCc-cccchh-----------hh--ccHHHHHHHHHHHHHHHhhhhcCCC-CceEEEEe
Q 019606          181 LRPEMEFRCFVRGRCLVGISQREV-TMCYPA-----------LS--EKKNDIKVLIQELFDSNVRQEFESE-NYTFDVYV  245 (338)
Q Consensus       181 i~ps~EFRcFV~~~~LiaISQr~~-~~~y~~-----------L~--~~~~~i~~~I~~F~~~~i~~~~~~~-~yv~DVyi  245 (338)
                         ..||||.|-+++++++..+.. ..+|++           +.  ...+.+...|.++.. .+...+... -+-+|+.+
T Consensus       185 ---g~e~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~-~~~~~lg~~G~~~vD~~~  260 (306)
T 1iow_A          185 ---GPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVL-KAWTTLGCKGWGRIDVML  260 (306)
T ss_dssp             ---CCEEEEEEETTEECCCEEEECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHH-HHHHHHTCCSEEEEEEEE
T ss_pred             ---CEEEEEEEECCCccceEEEEeCCCeEchhheecCCCeeEEcCCCCCHHHHHHHHHHHH-HHHHHcCCceEEEEEEEE
Confidence               689999999998876554221 112322           10  122445555666554 333445554 45799999


Q ss_pred             cCCCcEEEEEecCCCCCcCC
Q 019606          246 TKDERVKILDFNPWGAFTLP  265 (338)
Q Consensus       246 ~~~~~v~LID~NPf~~~Td~  265 (338)
                      +.+++++++|+||..+.+..
T Consensus       261 ~~~g~~~~iEiN~rpg~~~~  280 (306)
T 1iow_A          261 DSDGQFYLLEANTSPGMTSH  280 (306)
T ss_dssp             CTTSCEEEEEEESSCCCSTT
T ss_pred             cCCCCEEEEEecCCCCCCCC
Confidence            98889999999998655543
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A Back     alignment and structure
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Back     alignment and structure
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X Back     alignment and structure
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Back     alignment and structure
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans} Back     alignment and structure
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Back     alignment and structure
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Back     alignment and structure
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X* Back     alignment and structure
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis} Back     alignment and structure
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Back     alignment and structure
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Back     alignment and structure
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Back     alignment and structure
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Back     alignment and structure
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Back     alignment and structure
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Back     alignment and structure
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Back     alignment and structure
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Back     alignment and structure
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Back     alignment and structure
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Back     alignment and structure
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Back     alignment and structure
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Back     alignment and structure
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} Back     alignment and structure
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Back     alignment and structure
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Back     alignment and structure
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Back     alignment and structure
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Back     alignment and structure
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Back     alignment and structure
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Back     alignment and structure
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Back     alignment and structure
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d1ehia2228 D-alanine:D-lactate ligase VanA, C-domain {Leucono 95.94
d1iowa2210 D-ala-D-ala ligase, C-domain {Escherichia coli, ge 93.87
d1uc8a2192 Lysine biosynthesis enzyme LysX ATP-binding domain 91.44
d1i7na2206 Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116 88.88
d1ulza3214 Biotin carboxylase (BC), domain 2 {Aquifex aeolicu 82.63
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=95.94  E-value=0.098  Score=43.67  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=78.4

Q ss_pred             HHHHHHHhCCeeeeecccCCCCcccccccCCcccccCHHHHHHHhhcchhHHHHHhhhhhhcCCCCCCCCCceEEEEecc
Q 019606           98 IKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIVLLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKW  177 (338)
Q Consensus        98 I~~aI~~lgG~vfpKLNwssPkDa~Wi~~~~sl~c~s~~DV~lLLksS~~i~~DL~~~~~~~~d~~~~~~~~~~LvLrkW  177 (338)
                      +.++.+.+|..|+.|-+     ++.  ...+..+|+|.+|+...++.          +++.          ....++.++
T Consensus        32 ~~~~~~~~g~P~VvKP~-----~g~--~s~GV~~~~~~~el~~~~~~----------~~~~----------~~~~liee~   84 (228)
T d1ehia2          32 WDKIVAELGNIVFVKAA-----NQG--SSVGISRVTNAEEYTEALSD----------SFQY----------DYKVLIEEA   84 (228)
T ss_dssp             HHHHHHHHCSCEEEEES-----SCC--TTTTEEEECSHHHHHHHHHH----------HTTT----------CSCEEEEEC
T ss_pred             HHHHHHHhCCCEEEEEe-----ccC--CCccceeccccchhhhhhhh----------hccc----------ccccccceE
Confidence            67777899999999944     433  12345789999987544432          1111          123455656


Q ss_pred             CCCCCCCceEEEEEeCC---eEEEEeeCCc------cccchhhh--------------ccHHHHHHHHHHHHHHHhhhhc
Q 019606          178 YPSLRPEMEFRCFVRGR---CLVGISQREV------TMCYPALS--------------EKKNDIKVLIQELFDSNVRQEF  234 (338)
Q Consensus       178 ~~~i~ps~EFRcFV~~~---~LiaISQr~~------~~~y~~L~--------------~~~~~i~~~I~~F~~~~i~~~~  234 (338)
                      .   ....|+.|.+.+.   .+..+..+.+      ..+|++-.              +....+.+.+.+... .+...+
T Consensus        85 i---~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~l  160 (228)
T d1ehia2          85 V---NGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMAL-DAYKVL  160 (228)
T ss_dssp             C---CCSCEEEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHH-HHHHHT
T ss_pred             E---eccceEEEEEeeCCCcceeeeeeeeccccccccceeeeeccccccccccccchhhhhHHHHHHHHHHHH-HHHhhh
Confidence            5   6678999887643   2233322222      22332211              112344444444433 223356


Q ss_pred             CCCCce-EEEEecCCCcEEEEEecCCCC
Q 019606          235 ESENYT-FDVYVTKDERVKILDFNPWGA  261 (338)
Q Consensus       235 ~~~~yv-~DVyi~~~~~v~LID~NPf~~  261 (338)
                      ...+|. +|+.+++++.+++||+||--+
T Consensus       161 g~~~~~~iD~~~d~~g~~~~lEvN~~Pg  188 (228)
T d1ehia2         161 NLRGEARMDFLLDENNVPYLGEPNTLPG  188 (228)
T ss_dssp             TCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred             hcCCeeeEEEEEcCCCcEEEEEecCCCC
Confidence            677887 999999989999999998644
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Back     information, alignment and structure
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure