Citrus Sinensis ID: 019607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHcccccccccccccccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHEEEccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEHHHccccEEEEccccccccEEEEEHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEEHccHHHHHHcccHHHHHccccccEccccccccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MWELICLTLAATAgnnigkvlqkkgtvilpplsfKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALsqapvsviqpvsgcgLAILSIFSHFYLKEVMNAVDWMGITLAGigtigvgaggeeqepssisifqlpWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVfleqgfptmlvpVCISIsiccsgtgfyyqtrglkhgRAIVVSTCAAVASIVTGVVAGMLAlgerlpsaptARFSLLLGWLLIMIGVVLLVSSsrlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaATLHQLITSTAKEKA
Flexible Loop (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRlvrhfrwpsrrimksglvrtgsqrvkdsgpsavipaatlhqlitstakeka
Low Complexity Region (SEG)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMgitlagigtigvgaggEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRReqemiefevveeiiYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGvvllvsssrlvrHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Disordered region (IsUnstruct)
*WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*****SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL**********************************
Disordered Region (DISOPRED)
MWELICLTLAATAGNNIGKVLQ******************AYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG*********IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS******************************************************
Disordered Region (DISEMBL)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGL************PSAVIPAATLHQLI********
Disordered Region (DISPRO)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRW***********************S**I*****************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIMKSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
P55580	117	Uncharacterized protein y	yes	no	0.328	0.948	0.318	0.0006

>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234) GN=NGR_a02340 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 5   ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
           I L  AA   + IG +L K G   LPP +          +   +V G +      LL  +
Sbjct: 6   IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61

Query: 65  ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
           AL    VSV  P+ +G G A+L I SH++  E  +   W+G+ L  +G I +  GG
Sbjct: 62  ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117

Rhizobium sp. (strain NGR234) (taxid: 394)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
224114565	359	predicted protein [Populus trichocarpa]	0.994	0.935	0.770	1e-154
255550079	344	conserved hypothetical protein [Ricinus	1.0	0.982	0.819	1e-148
356552374	343	PREDICTED: uncharacterized protein LOC10	1.0	0.985	0.769	1e-144
224088802	332	predicted protein [Populus trichocarpa]	0.967	0.984	0.763	1e-144
356564039	343	PREDICTED: uncharacterized protein LOC10	1.0	0.985	0.763	1e-142
356507006	344	PREDICTED: uncharacterized protein LOC10	1.0	0.982	0.776	1e-142
356514649	338	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.781	1e-141
449447136	344	PREDICTED: uncharacterized protein LOC10	1.0	0.982	0.781	1e-141
297811313	344	hypothetical protein ARALYDRAFT_909170 [	0.997	0.979	0.775	1e-140
22326741	344	uncharacterized protein [Arabidopsis tha	0.997	0.979	0.772	1e-140

>gi|224114565|ref|XP_002332339.1| predicted protein [Populus trichocarpa] gi|222831906|gb|EEE70383.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/361 (77%), Positives = 312/361 (86%), Gaps = 25/361 (6%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK-----------------VIRAYA 43
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLSFKLK                 VIRAYA
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTLILPPLSFKLKACIFYPLSFSFFSLPPLVIRAYA 60

Query: 44  VNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM 103
            NKAW+IGFL+DI GALLMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+
Sbjct: 61  ANKAWIIGFLIDICGALLMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWI 120

Query: 104 GITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMI 163
           GITLAGIGTIGVGAGGEEQE SS+SIFQLPWLAF+V++LFV+LNGWLR+ +HQRR  EM+
Sbjct: 121 GITLAGIGTIGVGAGGEEQEASSVSIFQLPWLAFLVALLFVVLNGWLRVYRHQRRAHEMM 180

Query: 164 EFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQT 223
           ++EVVEEIIYGLESGILFGMASVISK+GFVFLEQGF  MLVP+C+SISICCS TGFYYQT
Sbjct: 181 DYEVVEEIIYGLESGILFGMASVISKMGFVFLEQGFSRMLVPICVSISICCSATGFYYQT 240

Query: 224 RGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV 283
           +GLKHGRAIVVSTCAAVASIVTGV+AGMLALGE+LPSAPTARFSLLLGWL I++GV+LLV
Sbjct: 241 QGLKHGRAIVVSTCAAVASIVTGVLAGMLALGEQLPSAPTARFSLLLGWLFIVVGVILLV 300

Query: 284 SSSRLVRHFRWPSRRIMKSG------LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 337
           SS+ L+RH   P RR ++        L R+GS R+KDS P+AVI AATLH LI+S +KEK
Sbjct: 301 SSTWLLRHL--PLRRFIRINVDRNFSLSRSGSLRLKDSNPTAVIHAATLHHLISSPSKEK 358

Query: 338 A 338
           A
Sbjct: 359 A 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550079|ref|XP_002516090.1| conserved hypothetical protein [Ricinus communis] gi|223544576|gb|EEF46092.1| conserved hypothetical protein [Ricinus communis]

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 282/344 (81%), Positives = 310/344 (90%), Gaps = 6/344 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK+WVIGFLMDI GA+
Sbjct: 1   MWESICLTLAAAAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKSWVIGFLMDICGAM 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALSQAPVSVIQPVSGCGLAILS+FSHFYLKEVMN +DW+GITLAGIGTIGVGAGGE
Sbjct: 61  LMLRALSQAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWIGITLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSIS+FQLPWLAF+V++LF+ LNGWLR+CK +RREQE +E+EV+EEIIYGLESGIL
Sbjct: 121 EQEVSSISVFQLPWLAFIVAVLFIGLNGWLRVCKRERREQETMEYEVIEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+ FVFLEQGF  MLVP+CISISIC S TGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMAFVFLEQGFSRMLVPICISISICSSATGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASIVTGV+AGMLALGERLPSAP AR SLLLGWLLI++GV+LLVSS+RL+R    P R +M
Sbjct: 241 ASIVTGVLAGMLALGERLPSAPAARLSLLLGWLLIIVGVILLVSSTRLLRQLPRPLRHLM 300

Query: 301 KS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
           +S       L R+GS RVKDS PSAVI  ATLHQLI++ AKEKA
Sbjct: 301 RSKADWNFNLSRSGSIRVKDSNPSAVIQTATLHQLISTPAKEKA 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552374|ref|XP_003544543.1| PREDICTED: uncharacterized protein LOC100779611 [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/343 (76%), Positives = 304/343 (88%), Gaps = 5/343 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE + LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFLMDI GAL
Sbjct: 1   MWESVVLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLMDILGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAFVV ILF+LL+GWLRICK QRREQEM+E++VVEE+IYGLESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFVVFILFILLSGWLRICKCQRREQEMVEYDVVEEVIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR     S+R  
Sbjct: 241 ASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSQRKR 300

Query: 301 KS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
            +      L R  S RV+++ PSAVI AATL+ L++S++KEKA
Sbjct: 301 SNVDKNFDLRRATSSRVRETSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088802|ref|XP_002308547.1| predicted protein [Populus trichocarpa] gi|222854523|gb|EEE92070.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 262/343 (76%), Positives = 292/343 (85%), Gaps = 16/343 (4%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAG+NIGKVLQKKGTVI           RAYA N AW+IGFLMDI GAL
Sbjct: 1   MWESICLTLAATAGSNIGKVLQKKGTVI-----------RAYAANVAWIIGFLMDIIGAL 49

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LML+ALS APVSVIQPVSGCGLAILS+FSHFYLKEVMN +DWMGITLAGIGTIGVGAGGE
Sbjct: 50  LMLKALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVIDWMGITLAGIGTIGVGAGGE 109

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE SSISI QLPWLA +V+ILFV+LNGWLR+ + QRR  E +++EVVEEIIYGLESGIL
Sbjct: 110 EQEASSISILQLPWLALLVAILFVVLNGWLRMYRRQRRAHETMDYEVVEEIIYGLESGIL 169

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GFVFLEQGF  MLVP+C++ISICCS TGFYYQT+GLKHGRAIV+STCAAV
Sbjct: 170 FGMASVISKMGFVFLEQGFSKMLVPLCLTISICCSATGFYYQTQGLKHGRAIVLSTCAAV 229

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASIVTGV+AGMLALGERLPSAP ARFSLLLGWLLI++GV+LLVSS+ L+RH   P R   
Sbjct: 230 ASIVTGVLAGMLALGERLPSAPAARFSLLLGWLLIVVGVILLVSSTWLLRHLPRPLRHFT 289

Query: 301 KSG-----LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
            S      L R+GS R+KD  P+AVI AATLH LI+S +KEKA
Sbjct: 290 SSADRNFSLSRSGSLRLKDPNPTAVIHAATLHHLISSPSKEKA 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564039|ref|XP_003550264.1| PREDICTED: uncharacterized protein LOC100819228 [Glycine max]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/343 (76%), Positives = 302/343 (88%), Gaps = 5/343 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+AATAGNNIGK+LQKKGT+ILPPLSFKLKVIR+YA+NK WV+GFL+DIFGAL
Sbjct: 1   MWESILLTVAATAGNNIGKILQKKGTIILPPLSFKLKVIRSYALNKTWVVGFLIDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE  ++SIF +P LAF+V ILF+LL+GWLRICK QRREQEM+E++VVEE+IYG ESGIL
Sbjct: 121 EQEVVALSIFHIPGLAFIVFILFILLSGWLRICKRQRREQEMMEYDVVEEVIYGFESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGM+SVISK+GF+FLEQGFP +LVP+CI IS+CCSGTG YYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMSSVISKMGFLFLEQGFPKLLVPMCIMISVCCSGTGIYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASI+TGV+AGMLALGERLPS P AR +LLLGWLLI++GV+LLV S+RLVR     SR+  
Sbjct: 241 ASILTGVLAGMLALGERLPSEPKARLALLLGWLLIIVGVILLVGSTRLVRFLSCSSRQKR 300

Query: 301 KS-----GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
            +     GL    S RV++  PSAVI AATL+ L++S++KEKA
Sbjct: 301 SNVEKNFGLRGATSSRVREPSPSAVIQAATLNHLLSSSSKEKA 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507006|ref|XP_003522263.1| PREDICTED: uncharacterized protein LOC100803982 [Glycine max]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 267/344 (77%), Positives = 306/344 (88%), Gaps = 6/344 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK WVIGFLMDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWVIGFLMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASI+TGV+AGMLALGERLPSAP ARF LLLGWLLI++GV+LLV S++LVR FR+ S    
Sbjct: 241 ASILTGVLAGMLALGERLPSAPKARFLLLLGWLLIIVGVILLVGSTKLVRFFRFSSHHFK 300

Query: 301 KS------GLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
           +S      G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 301 RSSVDKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514649|ref|XP_003526017.1| PREDICTED: uncharacterized protein LOC100788141 [Glycine max]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/338 (78%), Positives = 304/338 (89%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE I LT+ ATAGNNIGK+LQKKGTVILPPLSFKLKVIRAYA+NK W+IGF+MDIFGAL
Sbjct: 1   MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWLIGFVMDIFGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRAL+ APVSVIQPVSGCGLAILS+FSHFYLKEVMN VDW+GITLAG GTIGVGAGGE
Sbjct: 61  LMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE +++SIF +PWLAFVV ILF++LNGWLRI K  RREQEM+E++VVEEIIYGLESGIL
Sbjct: 121 EQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GF+FLEQGFP +LVP+CI IS+C SGTGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASI+TGV+AGMLALGERLPSAP AR  LLLGWLLI++GV+LLV S++LVR FR+ S R  
Sbjct: 241 ASILTGVLAGMLALGERLPSAPKARLLLLLGWLLIIVGVILLVGSTKLVRFFRFSSHRFK 300

Query: 301 KSGLVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEKA 338
             G  R+G+ RV++  P+AVI AATL+ L++S++KEKA
Sbjct: 301 NYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447136|ref|XP_004141325.1| PREDICTED: uncharacterized protein LOC101210517 [Cucumis sativus] gi|449486673|ref|XP_004157364.1| PREDICTED: uncharacterized protein LOC101228106 [Cucumis sativus]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/344 (78%), Positives = 299/344 (86%), Gaps = 6/344 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAA AGNNIGK+LQKKGTVILPPLSFKLKVIRAYA NK W+IGFLMDIFGA+
Sbjct: 1   MWEPICLTLAAAAGNNIGKILQKKGTVILPPLSFKLKVIRAYAFNKTWIIGFLMDIFGAV 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVS+IQPVSGCGLAILSIFSHFYLKE+MN VDWMGI LAGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSIIQPVSGCGLAILSIFSHFYLKEIMNVVDWMGIMLAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQ+ S+IS+F LPWLAF+++ILFVLLNGWL   K QRREQE++EFEVVEEIIYGLESGIL
Sbjct: 121 EQKASAISVFHLPWLAFIMTILFVLLNGWLHFYKRQRREQELMEFEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASVISK+GF+FLEQGF  +LVP+CI ISICCS TGFYYQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVISKMGFLFLEQGFHQILVPICILISICCSATGFYYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASIVTGV+AGMLALGE LPS+PT R  LLLGWLLI+IGV+LLVSSSRL+R   W  RR  
Sbjct: 241 ASIVTGVLAGMLALGEELPSSPTGRLFLLLGWLLIIIGVILLVSSSRLIRRLTWLYRRFK 300

Query: 301 KSGLV-----RTGSQ-RVKDSGPSAVIPAATLHQLITSTAKEKA 338
           +SG+      R+GS  R++DS PSA+I   TL  L++S AK  A
Sbjct: 301 RSGVDRNFGHRSGSAVRLRDSSPSAIIQTTTLQNLLSSKAKADA 344

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811313|ref|XP_002873540.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata] gi|297319377|gb|EFH49799.1| hypothetical protein ARALYDRAFT_909170 [Arabidopsis lyrata subsp. lyrata]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/343 (77%), Positives = 296/343 (86%), Gaps = 6/343 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKVIRAYAVNK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVIRAYAVNKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASV+SK+GFVF+EQGF  M +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVVSKMGFVFVEQGFSAMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+GVVLLV+SSRL+RH     RR  
Sbjct: 241 ASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFRRSR 300

Query: 301 KSGLV------RTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 337
           ++ L       RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct: 301 QTSLERGFNIRRTPSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326741|ref|NP_196757.2| uncharacterized protein [Arabidopsis thaliana] gi|20260356|gb|AAM13076.1| putative protein [Arabidopsis thaliana] gi|22136174|gb|AAM91165.1| putative protein [Arabidopsis thaliana] gi|332004362|gb|AED91745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/343 (77%), Positives = 296/343 (86%), Gaps = 6/343 (1%)

Query: 1   MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
           MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct: 1   MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query: 61  LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGE 120
           LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+GIT+AGIGTIGVGAGGE
Sbjct: 61  LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query: 121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGIL 180
           EQE S IS+FQL WLA VV+ILFVLLN WL I K QRREQE+ E+EVVEEIIYGLESGIL
Sbjct: 121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query: 181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
           FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct: 181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query: 241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSSRLVRHFRWPSRRIM 300
           ASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+GVVLLV+SSRL+RH     RR  
Sbjct: 241 ASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFRRSR 300

Query: 301 KSGLV------RTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 337
           ++ L       RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct: 301 QTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2143044	344	AT5G11960 "AT5G11960" [Arabido	0.997	0.979	0.667	2.2e-114

TAIR|locus:2143044 AT5G11960 "AT5G11960" [Arabidopsis thaliana (taxid:3702)]

 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 229/343 (66%), Positives = 257/343 (74%)

Query:     1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGAL 60
             MWE ICLTLAATAGNNIGKVLQKKGT+ILPPLS KLKV+RAYA NK W +GFLMDI GAL
Sbjct:     1 MWESICLTLAATAGNNIGKVLQKKGTIILPPLSLKLKVLRAYAENKPWALGFLMDIVGAL 60

Query:    61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMXXXXXXXXXXXXXXXXE 120
             LMLRALS APVSV+QPVSGCGLAILS+FSHFYLKEVMN  DW+                E
Sbjct:    61 LMLRALSLAPVSVVQPVSGCGLAILSVFSHFYLKEVMNVFDWIGITVAGIGTIGVGAGGE 120

Query:   121 EQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRRXXXXXXXXXXXXXXYGLESGIL 180
             EQE S IS+FQL WLA VV+ILFVLLN WL I K QRR              YGLESGIL
Sbjct:   121 EQEASLISVFQLLWLALVVAILFVLLNAWLHIFKRQRREQELGEYEVVEEIIYGLESGIL 180

Query:   181 FGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAV 240
             FGMASV+SK+GFVF+EQGF TM +P+CISISICCSGTGF+YQTRGLKHGRAIVVSTCAAV
Sbjct:   181 FGMASVVSKMGFVFVEQGFSTMFIPMCISISICCSGTGFFYQTRGLKHGRAIVVSTCAAV 240

Query:   241 ASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGXXXXXXXXXXXXH----FRWPS 296
             ASIVTGVVAGM ALGE+LP++P+ R  LLLGWLLIM+G            H    FR   
Sbjct:   241 ASIVTGVVAGMFALGEKLPTSPSGRLLLLLGWLLIMLGVVLLVTSSRLIRHLPRSFRRSR 300

Query:   297 RRIMKSG--LVRTGSQRVKDSGPSAVIPAATLHQLITSTAKEK 337
             +  ++ G  + RT S   KD+ PSAVI AATLH L++S +K+K
Sbjct:   301 QTSLERGFNIRRTTSHTPKDTNPSAVIQAATLHHLLSSPSKDK 343


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      338       296   0.00093  115 3  11 22  0.43    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  198 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.83u 0.11s 19.94t   Elapsed:  00:00:01
  Total cpu time:  19.83u 0.11s 19.94t   Elapsed:  00:00:01
  Start:  Thu May  9 20:21:06 2013   End:  Thu May  9 20:21:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_207000001 hypothetical protein (359 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
COG2510	140	COG2510, COG2510, Predicted membrane protein [Func	0.003
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	0.003

>gnl|CDD|225308 COG2510, COG2510, Predicted membrane protein [Function unknown]

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 58  GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
             LL  RAL +   S + P+    + +  + S  +L E ++   W+GI L  IG I
Sbjct: 80  SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAI 135

Length = 140

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 7/240 (2%)

Query: 48  WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL 107
           W  G L  I G      A + AP +++ P+    + I ++ S F+L E +N    +G  L
Sbjct: 53  WWAGLLTMIVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVL 112

Query: 108 AGIG-TIGVGAGGEEQEPSSISIFQ--LPWLAFVVSILFVLLNGWLRICKHQRR--EQEM 162
             +G T+ V    +EQE  S+           F+V ++ V+    + I   + R  +  +
Sbjct: 113 CIVGSTVIVIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNI 172

Query: 163 IEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQ 222
           + +  +  +I  L    +  +   I KL F    Q        + + + + C  T   Y 
Sbjct: 173 LVYITICSLIGSLTVMSVKALGIAI-KLTFSGKNQ-LGYPQFWIFLVVVVTCVVTQINYL 230

Query: 223 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL 282
            + L      +V+    V    + + A  +   E L  +       L G+  I++G  LL
Sbjct: 231 NKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTILLGTFLL 290

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.97
KOG2922	335	consensus Uncharacterized conserved protein [Funct	99.9
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.36
PRK15430	296	putative chloramphenical resistance permease RarD;	99.27
PRK11689	295	aromatic amino acid exporter; Provisional	99.14
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.14
PLN00411	358	nodulin MtN21 family protein; Provisional	99.1
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.08
PRK11272	292	putative DMT superfamily transporter inner membran	98.9
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.87
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.86
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.83
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.68
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.63
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.59
COG2510	140	Predicted membrane protein [Function unknown]	98.57
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.56
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.52
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.49
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.48
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.44
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.16
COG2962	293	RarD Predicted permeases [General function predict	97.93
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.82
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.7
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.69
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.64
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.54
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.49
PRK11689	295	aromatic amino acid exporter; Provisional	97.44
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	97.4
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.3
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.27
PRK11272	292	putative DMT superfamily transporter inner membran	97.24
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.24
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.16
PLN00411	358	nodulin MtN21 family protein; Provisional	97.11
COG2510	140	Predicted membrane protein [Function unknown]	97.11
PRK11431	105	multidrug efflux system protein; Provisional	97.09
COG2076	106	EmrE Membrane transporters of cations and cationic	97.08
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.91
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.77
PRK15430	296	putative chloramphenical resistance permease RarD;	96.5
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.39
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.18
PRK13499	345	rhamnose-proton symporter; Provisional	95.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	95.41
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.16
PF13536	113	EmrE: Multidrug resistance efflux transporter	94.78
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	94.77
KOG3912	372	consensus Predicted integral membrane protein [Gen	94.28
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	93.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	93.22
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	93.05
PRK09541	110	emrE multidrug efflux protein; Reviewed	92.59
COG2076	106	EmrE Membrane transporters of cations and cationic	92.05
KOG4831	125	consensus Unnamed protein [Function unknown]	90.97
PRK10650	109	multidrug efflux system protein MdtI; Provisional	90.69
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	90.19
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	90.07
PRK11431	105	multidrug efflux system protein; Provisional	90.06
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	87.23
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	85.62
KOG2765	416	consensus Predicted membrane protein [Function unk	84.68
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	83.89
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	80.86

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.97  E-value=7.3e-31  Score=252.29  Aligned_cols=276  Identities=22%  Similarity=0.322  Sum_probs=204.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC   80 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~   80 (338)
                      ++++.+|++|+++++.|..+||+++.+.++.+.+. +..+.|+|||.||.|+.++++|.++|+.||+++|.++|||+++.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~   85 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL   85 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence            57999999999999999999999999887644332 34568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCccc-hhhH---HHHHHHHHHHHHHHH-HHHHHhh
Q 019607           81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSIS-IFQL---PWLAFVVSILFVLLN-GWLRICK  154 (338)
Q Consensus        81 ~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~-~~~~~~~~~~~~-~~~~---~~~~~~~~~~~v~l~-~~~~~~~  154 (338)
                      +++++++++++++|||++++||.|++++++|..++. .++++++..+.+ ....   +.........++... ......+
T Consensus        86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~  165 (300)
T PF05653_consen   86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP  165 (300)
T ss_pred             hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999998765 444433322211 1111   111111111111111 1111122


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hccCccchhHHHH---HHHHHHHHHHHHHHHHHhhhc
Q 019607          155 HQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVF---LEQGFPTMLVPVC---ISISICCSGTGFYYQTRGLKH  228 (338)
Q Consensus       155 ~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~---~~~g~~~l~~p~~---l~~~v~~~~~g~~l~q~Al~~  228 (338)
                      |.++.         +-..|...+++..+.+...+|.....   ..+|.+++.+|..   +..++.+...++++.|+|++.
T Consensus       166 r~g~~---------~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~  236 (300)
T PF05653_consen  166 RYGRR---------NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR  236 (300)
T ss_pred             hhccc---------ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            21111         23568888899999999999974322   2245555544433   333455678889999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019607          229 GRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS  286 (338)
Q Consensus       229 G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~  286 (338)
                      .++..+.....+.-...+++-|.++|+|..+.+++....+.+|+..++.||++++...
T Consensus       237 fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~  294 (300)
T PF05653_consen  237 FDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK  294 (300)
T ss_pred             ccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence            9965544333666677889999999999999999999999999999999999998653

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=1.8e-24  Score=205.71  Aligned_cols=275  Identities=21%  Similarity=0.270  Sum_probs=204.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCG   81 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~   81 (338)
                      .++.+|+.|++.++.+..+||++..+....+.+. ..=..|++.|.||+|++.|++|..+++.||+|+|.++|.|+++++
T Consensus        21 ~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAls  100 (335)
T KOG2922|consen   21 IGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALS  100 (335)
T ss_pred             eeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHH
Confidence            3567899999999999999999998765422111 111358899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc-cCCCCCCCCcc-chhhH---HHHHHHHHHHHHHHHHHHHHhhcc
Q 019607           82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSI-SIFQL---PWLAFVVSILFVLLNGWLRICKHQ  156 (338)
Q Consensus        82 l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~-~~~~~~~~~~~-~~~~~---~~~~~~~~~~~v~l~~~~~~~~~~  156 (338)
                      +++.+++++++++|+++..+.+|+++|++|..+++ .+|++++..+. +.++.   |...+...+.+ .....+....++
T Consensus       101 vi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~ii-l~~~il~~~~~p  179 (335)
T KOG2922|consen  101 VIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIII-LIVLILIFFYAP  179 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHH-HHHHHHheeecc
Confidence            99999999999999999999999999999998876 56655554331 11221   11111111111 111111122222


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhccCccchhHHHH---HHHHHHHHHHHHHHHHHhhhcCC
Q 019607          157 RREQEMIEFEVVEEIIYGLESGILFGMASVISKLGF---VFLEQGFPTMLVPVC---ISISICCSGTGFYYQTRGLKHGR  230 (338)
Q Consensus       157 r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~---~~~~~g~~~l~~p~~---l~~~v~~~~~g~~l~q~Al~~G~  230 (338)
                      |..+.       .-+.|...+++.-+++...+|..-   +...+|..++..|..   +...+.+....+.+.|+|++.-+
T Consensus       180 ~~g~t-------nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fn  252 (335)
T KOG2922|consen  180 RYGQT-------NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFN  252 (335)
T ss_pred             ccccc-------ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            22221       237789999999999999999732   344456666555533   34445566788999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          231 AIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       231 ~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      +..++..--+.-....++.|.+.|.|..+.+...+.++++|+..+..|++++.+.
T Consensus       253 tslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~  307 (335)
T KOG2922|consen  253 TSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRT  307 (335)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeee
Confidence            7666644478888889999999999999999999999999999999999999653

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.36  E-value=2.2e-10  Score=108.58  Aligned_cols=257  Identities=16%  Similarity=0.176  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc--c--hHH-H--HHH-------hh--hhhHH----HHHHHHHHHHHHHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LKV-I--RAY-------AV--NKAWV----IGFLMDIFGALLML   63 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~--~~~-l--~~l-------lr--~p~W~----~G~~~~~~G~~l~~   63 (338)
                      +..+.+.++++++..++++||..++.++...  .  ... +  ...       .+  ++.||    .+......++.+..
T Consensus         2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T TIGR03340         2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA   81 (281)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999988766443110  0  000 0  001       11  11222    34445667777889


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 019607           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF  143 (338)
Q Consensus        64 ~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (338)
                      .|+...|.+.++|+...+.+++.+++.+++|||+++++|.|+.++..|+..+...+.++ . ......   ..+..++  
T Consensus        82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~-~-~~~g~~---~~l~aal--  154 (281)
T TIGR03340        82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ-H-RRKAYA---WALAAAL--  154 (281)
T ss_pred             HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc-c-chhHHH---HHHHHHH--
Confidence            99999999999999999999999999999999999999999999999998765322211 1 111111   1111111  


Q ss_pred             HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCc-cchhHH-HHHHHHHHHHHHHHH
Q 019607          144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGF-PTMLVP-VCISISICCSGTGFY  220 (338)
Q Consensus       144 v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaG-l~fg~~a~l~K~~~~~~~~g~-~~l~~p-~~l~~~v~~~~~g~~  220 (338)
                       ....+..+.|+...+... .........++...+ +.+...... +.     ++.. ...... ...+...+.+..++.
T Consensus       155 -~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~s~l~~~  226 (281)
T TIGR03340       155 -GTAIYSLSDKAAALGVPA-FYSALGYLGIGFLAMGWPFLLLYLK-RH-----GRSMFPYARQILPSATLGGLMIGGAYA  226 (281)
T ss_pred             -HHHHhhhhccccccchhc-ccccHHHHHHHHHHHHHHHHHHHHH-Hh-----ccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence             122222233332211000 000000111111111 222221110 10     0000 000111 223445566778999


Q ss_pred             HHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019607          221 YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  282 (338)
Q Consensus       221 l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l  282 (338)
                      +++++++..++..++.. ...+|++++++|+.+|||+....      ...|..+++.|++++
T Consensus       227 l~~~al~~~~a~~~~~~-~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       227 LVLWAMTRLPVATVVAL-RNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHhhCCceEEEee-cccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHhC
Confidence            99999999885443322 45689999999999999987432      356888888888653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.27  E-value=9.2e-09  Score=98.39  Aligned_cols=257  Identities=12%  Similarity=0.087  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------H-------------HHHhhhhhHH----HHHHHHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------I-------------RAYAVNKAWV----IGFLMDIF   57 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l-------------~~llr~p~W~----~G~~~~~~   57 (338)
                      ..++.+.++++++++.....-|.. .+.|+... -.|.      +             ++..++++++    .|......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG   85 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            357888999999999888887754 33333210 0010      0             0011123322    55566777


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019607           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF  137 (338)
Q Consensus        58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~  137 (338)
                      .+.+.+.|+...|.+.+.-+..+..+++.+++.+++|||+++++|.|+++..+|+.++... +++    ..   .  ..+
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~----~~---~--~~l  155 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS----LP---I--IAL  155 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC----cc---H--HHH
Confidence            8889999999999999999999999999999999999999999999999999999876521 111    11   1  111


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHH
Q 019607          138 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT  217 (338)
Q Consensus       138 ~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~  217 (338)
                      ..++   ....+....|+...+...   .......+....+..+.+.  ....  ...............++...+.+..
T Consensus       156 ~aa~---~~a~~~i~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~g~~t~i  225 (296)
T PRK15430        156 GLAF---SFAFYGLVRKKIAVEAQT---GMLIETMWLLPVAAIYLFA--IADS--STSHMGQNPMSLNLLLIAAGIVTTV  225 (296)
T ss_pred             HHHH---HHHHHHHHHHhcCCCCch---hHHHHHHHHHHHHHHHHHH--HccC--CcccccCCcHHHHHHHHHHHHHHHH
Confidence            1111   122222233333221110   1111112222222221100  0000  0000000111111122223335678


Q ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 019607          218 GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSSS  286 (338)
Q Consensus       218 g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s~  286 (338)
                      ++++.++++++.++..++.. +..+|++++++|+.+|||+....      ...|..+++.++.+...+.
T Consensus       226 ~~~~~~~a~~~~~a~~~s~~-~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        226 PLLCFTAAATRLRLSTLGFF-QYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHHHH
Confidence            99999999999997655543 67899999999999999987443      3467777766666655544

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.14  E-value=6.7e-08  Score=92.42  Aligned_cols=258  Identities=15%  Similarity=0.119  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH-----HHHHh------hhhhH---HHHHHHHHHHHHHHHHHHhh
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV-----IRAYA------VNKAW---VIGFLMDIFGALLMLRALSQ   68 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~-----l~~ll------r~p~W---~~G~~~~~~G~~l~~~AL~~   68 (338)
                      +.++++.+.++.+......|.+....|+... -.|.     +.-.+      |+..|   ..|.........++..++..
T Consensus         5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4567888889999999999988877776432 1111     11111      11111   12222222333334455543


Q ss_pred             ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCC-C---CccchhhHH-HHHHHH
Q 019607           69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQE-P---SSISIFQLP-WLAFVV  139 (338)
Q Consensus        69 ----~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~-~---~~~~~~~~~-~~~~~~  139 (338)
                          .|...+.-+..+..+++.+++..++|||+++++|.|+.+..+|+..+..++.+.. .   ......... ...+..
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  164 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG  164 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence                3444445556677889999999999999999999999999999988763321100 0   000000010 111111


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHH-HHHHHHHHHHHHH
Q 019607          140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP-VCISISICCSGTG  218 (338)
Q Consensus       140 ~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p-~~l~~~v~~~~~g  218 (338)
                      +   ...+.+..+.||.+++..     .. ...+ ...++.+-......    +....... .... +.++.. ..+.++
T Consensus       165 a---~~~A~~~v~~k~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~----~~~~~~~~-~~~~~~l~~~~-~~t~~~  228 (295)
T PRK11689        165 A---FIWAAYCNVTRKYARGKN-----GI-TLFF-ILTALALWIKYFLS----PQPAMVFS-LPAIIKLLLAA-AAMGFG  228 (295)
T ss_pred             H---HHHHHHHHHHhhccCCCC-----ch-hHHH-HHHHHHHHHHHHHh----cCccccCC-HHHHHHHHHHH-HHHHHH
Confidence            1   122223333444432211     00 1111 11222211111110    00001111 1111 112332 456788


Q ss_pred             HHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          219 FYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       219 ~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      ++++++++|+.++..++.. ...+|++++++|++++||+....      ...|.++++.|+++...
T Consensus       229 ~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            9999999999997655544 57899999999999999987432      35788888888876654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.14  E-value=6.7e-08  Score=92.51  Aligned_cols=264  Identities=19%  Similarity=0.193  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------HHHHhhh-hhH---HH--HHHHHHHHHHHHHHHHhh-cC
Q 019607            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAYAVN-KAW---VI--GFLMDIFGALLMLRALSQ-AP   70 (338)
Q Consensus         5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~~llr~-p~W---~~--G~~~~~~G~~l~~~AL~~-~p   70 (338)
                      .+++++++++.+.....-|.+..+.++... ..|.      +.-+.++ +.+   +.  |+......+.+.+.++.. .|
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   85 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP   85 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            356788899999999988887766655421 1121      1112221 111   12  222223333455667766 47


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 019607           71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWL  150 (338)
Q Consensus        71 lsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~  150 (338)
                      .+...-+..+..+++.+++.+++|||+++++|+|+++..+|+..+..+..+..  +....-. ..++...   +....+.
T Consensus        86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~--~~~~~G~-~l~l~aa---l~~a~~~  159 (299)
T PRK11453         86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQ--HVAMLGF-MLTLAAA---FSWACGN  159 (299)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCc--chhHHHH-HHHHHHH---HHHHHHH
Confidence            77777778888899999999999999999999999999999887763221111  1010000 1112211   1222223


Q ss_pred             HHhhcccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhccCccc--hhHH-HHHHHHHHHHHHHHHHHHHhh
Q 019607          151 RICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLEQGFPT--MLVP-VCISISICCSGTGFYYQTRGL  226 (338)
Q Consensus       151 ~~~~~~r~~~~~~~~~~~~a~ll-g~aaGl~fg~~a~l~K~~~~~~~~g~~~--l~~p-~~l~~~v~~~~~g~~l~q~Al  226 (338)
                      .+.|+..+...  ......-..+ .+.+++.+...+......... ...+..  ...+ ...|..+..+..+++++.+++
T Consensus       160 v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l  236 (299)
T PRK11453        160 IFNKKIMSHST--RPAVMSLVVWSALIPIIPFFVASLILDGSATM-IHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLL  236 (299)
T ss_pred             HHHHHHhcccC--ccchhHHHHHHHHHHHHHHHHHHHHhcCchhh-hhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33343211100  0000111111 122222222222111110000 000011  1112 224566778889999999999


Q ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          227 KHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       227 ~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      |+-++..++. ....+|+++.++|+.++||+....      ...|..+++.|+.+...
T Consensus       237 ~~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~~  287 (299)
T PRK11453        237 GRYETWRVAP-LSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINVF  287 (299)
T ss_pred             HhCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHhc
Confidence            9877554443 357899999999999999987332      35788888888876653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.10  E-value=5.4e-08  Score=96.21  Aligned_cols=212  Identities=16%  Similarity=0.163  Sum_probs=122.3

Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHhhhcc-CCCCC---------
Q 019607           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEEQ---------  122 (338)
Q Consensus        59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~------l~~rl~~~~w~gv~l~~~Gl~~l~~-~~~~~---------  122 (338)
                      +.++..++.+.|-+..-=+..+..+++.++++++      +|||+++++|+|+.++..|+.++.. ++...         
T Consensus        92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~  171 (358)
T PLN00411         92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL  171 (358)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence            3457888889999999888999999999999999      6999999999999999999877642 22110         


Q ss_pred             ---CC---CccchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 019607          123 ---EP---SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE  196 (338)
Q Consensus       123 ---~~---~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~  196 (338)
                         ..   .......++...+......+....+..+.|+..++  +... ...........++.+...+...... ..  
T Consensus       172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~-~~~t~~~~~~~~~~~~~~~l~~~~~-~~--  245 (358)
T PLN00411        172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAA-FTVSFLYTVCVSIVTSMIGLVVEKN-NP--  245 (358)
T ss_pred             cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcH-hHHHHHHHHHHHHHHHHHHHHHccC-Cc--
Confidence               00   00011112111111111111222233334432111  1000 0112223444444444333321100 00  


Q ss_pred             cCccchhH---HHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHH
Q 019607          197 QGFPTMLV---PVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWL  273 (338)
Q Consensus       197 ~g~~~l~~---p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~  273 (338)
                      ..+...++   ...+|..+ .+.+++++++++.++-.+..++.. ...+|++++++|+++|||+....      ..+|.+
T Consensus       246 ~~~~~~~~~~~~~i~y~~i-~t~lay~lw~~~v~~~ga~~as~~-~~L~PV~a~llg~l~LgE~lt~~------~~iG~~  317 (358)
T PLN00411        246 SVWIIHFDITLITIVTMAI-ITSVYYVIHSWTVRHKGPLYLAIF-KPLSILIAVVMGAIFLNDSLYLG------CLIGGI  317 (358)
T ss_pred             ccceeccchHHHHHHHHHH-HHHHHHHHHHHHHhccCchHHHHH-HhHHHHHHHHHHHHHhCCCCcHH------HHHHHH
Confidence            00110011   11233334 345789999999987776555543 57899999999999999988433      457899


Q ss_pred             HHHHHHHHHhh
Q 019607          274 LIMIGVVLLVS  284 (338)
Q Consensus       274 li~~gvv~l~~  284 (338)
                      +++.|+.+...
T Consensus       318 LIl~Gv~l~~~  328 (358)
T PLN00411        318 LITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHh
Confidence            99999987764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.08  E-value=6.8e-08  Score=89.49  Aligned_cols=206  Identities=17%  Similarity=0.136  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019607           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI  129 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~  129 (338)
                      .|.....+...+...|+...|.+.+..+..+..+++.+++..++|||+++++|.|+.++.+|+..+...++.+.    ..
T Consensus        52 ~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~----~~  127 (260)
T TIGR00950        52 LGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSI----NP  127 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccc----cH
Confidence            55566778888889999999999999999999999999999999999999999999999999988764332211    11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcc-chhHH-HH
Q 019607          130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFP-TMLVP-VC  207 (338)
Q Consensus       130 ~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~-~l~~p-~~  207 (338)
                      .-. ...+...   +.........|+..++...   .......+....|..+-......+      ++... ...+. +.
T Consensus       128 ~G~-~~~l~a~---~~~a~~~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~  194 (260)
T TIGR00950       128 AGL-LLGLGSG---ISFALGTVLYKRLVKKEGP---ELLQFTGWVLLLGALLLLPFAWFL------GPNPQALSLQWGAL  194 (260)
T ss_pred             HHH-HHHHHHH---HHHHHHHHHHhHHhhcCCc---hHHHHHHHHHHHHHHHHHHHHHhc------CCCCCcchHHHHHH
Confidence            111 1111111   1222222233332211100   000000011122211111111111      11111 11111 23


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHH
Q 019607          208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGV  279 (338)
Q Consensus       208 l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gv  279 (338)
                      ++..++.+..++.++.++++..++..++.. ...+|+++.++++.++||+.+.  .    ...|..+++.|+
T Consensus       195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~ll~~~~~~E~~~~--~----~~~G~~li~~g~  259 (260)
T TIGR00950       195 LYLGLIGTALAYFLWNKGLTLVDPSAASIL-ALAEPLVALLLGLLILGETLSL--P----QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHhc
Confidence            344455567889999999999986555544 5789999999999999998743  2    245666666654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.90  E-value=7.5e-07  Score=85.01  Aligned_cols=207  Identities=17%  Similarity=0.150  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019607           50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL-~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~  128 (338)
                      .|......++.+...++ ...|.....-+..+..+++.+++.+ +|||+++++|.|+.+..+|+..+..+++.+ . .  
T Consensus        74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~-~--  148 (292)
T PRK11272         74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-G-N--  148 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-c-c--
Confidence            34444445566777787 8888888888888899999999975 799999999999999999987775332211 1 1  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcc---chhH
Q 019607          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFP---TMLV  204 (338)
Q Consensus       129 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaG-l~fg~~a~l~K~~~~~~~~g~~---~l~~  204 (338)
                      ..-. +..+...+   ..+......|+..++..      .....+....| +....... .      .++.+.   ...+
T Consensus       149 ~~G~-l~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~  211 (292)
T PRK11272        149 PWGA-ILILIASA---SWAFGSVWSSRLPLPVG------MMAGAAEMLAAGVVLLIASL-L------SGERLTALPTLSG  211 (292)
T ss_pred             hHHH-HHHHHHHH---HHHHHHHHHHhcCCCcc------hHHHHHHHHHHHHHHHHHHH-H------cCCcccccCCHHH
Confidence            1111 11121111   12222223344222111      01112222222 11111111 1      111111   1112


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607          205 P-VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  283 (338)
Q Consensus       205 p-~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  283 (338)
                      + ...+..+..+..++.++++++|+.++..++.. ...+|+.+.++|+.++||+.  ++.    ...|..+++.|++.+.
T Consensus       212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----HHHHHHHHHHHHHHHH
Confidence            2 22345555678899999999999986555543 57899999999999999986  332    3578889999998876


Q ss_pred             hh
Q 019607          284 SS  285 (338)
Q Consensus       284 ~s  285 (338)
                      ..
T Consensus       285 ~~  286 (292)
T PRK11272        285 LG  286 (292)
T ss_pred             HH
Confidence            43

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.87  E-value=6.5e-08  Score=82.54  Aligned_cols=117  Identities=18%  Similarity=0.154  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchH--HHHHHhhhh--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS   78 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~--~l~~llr~p--~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~   78 (338)
                      .+.++.+.+.++.+.|+.+-|+++.+.++.+.+..  .......+|  .-+.|+.+.++++.+-..+++..|++...|+.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~   81 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL   81 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            46788899999999999999999988765432221  122345677  55699999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHhhhccCC
Q 019607           79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGG  119 (338)
Q Consensus        79 ~~~l~~~~~ls~~--~l~~rl~~~~w~gv~l~~~Gl~~l~~~~  119 (338)
                      .....+....+..  ++||+++..+|+|+.++++|+.++..++
T Consensus        82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            8888788777775  8999999999999999999999886443

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.86  E-value=2.7e-06  Score=81.27  Aligned_cols=248  Identities=17%  Similarity=0.123  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chH------HHHHH-------hhhhhH----HHHHHHHHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK------VIRAY-------AVNKAW----VIGFLMDIFGALLMLR   64 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~------~l~~l-------lr~p~W----~~G~~~~~~G~~l~~~   64 (338)
                      .++.+.+++.++.+.+...-|.+....|+... -.|      .+.-+       .+++.|    +.|.. ......+.+.
T Consensus        12 ~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~   90 (293)
T PRK10532         12 LPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFYL   90 (293)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            57888999999999999999988776654321 001      00001       112233    45543 4555666778


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHHHHH
Q 019607           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFV  144 (338)
Q Consensus        65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  144 (338)
                      ++...|.+...-+..+..+++.+++    +||.+  ++.++.++..|+..+...+.+..  ..+..-. ...+..++   
T Consensus        91 al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~~--~~~~~G~-ll~l~aa~---  158 (293)
T PRK10532         91 SIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDVS--HVDLTGA-ALALGAGA---  158 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCcc--cCChHHH-HHHHHHHH---
Confidence            8888888877666666666666665    35544  44555566677766542211111  1111101 11111111   


Q ss_pred             HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC-cc-chhHH-HHHHHHHHHHHHHHHH
Q 019607          145 LLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG-FP-TMLVP-VCISISICCSGTGFYY  221 (338)
Q Consensus       145 ~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g-~~-~l~~p-~~l~~~v~~~~~g~~l  221 (338)
                      ....+....|+..++..     ...-......+++.....+        ...++ .. ....+ +.+|..++++.+++.+
T Consensus       159 ~~a~~~v~~r~~~~~~~-----~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        159 CWAIYILSGQRAGAEHG-----PATVAIGSLIAALIFVPIG--------ALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHHHHHhccCC-----chHHHHHHHHHHHHHHHHH--------HHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            12222222333221111     0011111122222211111        11111 11 11111 2356777788999999


Q ss_pred             HHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607          222 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  283 (338)
Q Consensus       222 ~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  283 (338)
                      +++++|+-++..++.. +..+|+++.++|+++|||+.+.  .    ..+|..+++.|++...
T Consensus       226 ~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~~--~----~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        226 EMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLTL--I----QWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCcH--H----HHHHHHHHHHHHHHHH
Confidence            9999999987665543 6789999999999999998733  2    3568888888887765

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.83  E-value=1e-06  Score=84.41  Aligned_cols=262  Identities=15%  Similarity=0.132  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-ch--H-HH----HHHhhhh------hHHHHHHH---HHHHHHHHHHHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-VI----RAYAVNK------AWVIGFLM---DIFGALLMLRAL   66 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~--~-~l----~~llr~p------~W~~G~~~---~~~G~~l~~~AL   66 (338)
                      +++++++++++++.--+..|+-. ..+.... +.  . .+    ....|+|      .|..|++.   ...|..+++.|.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai   80 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM   80 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            67899999999987666666542 2111110 00  0 00    0113332      23446666   888889999999


Q ss_pred             hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHhhhccCCCCCCC-CccchhhHH-HHHHHH
Q 019607           67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAGGEEQEP-SSISIFQLP-WLAFVV  139 (338)
Q Consensus        67 ~~~plsvVqPl~~-~~l~~~~~ls~~~l~~rl~~~~----w~gv~l~~~Gl~~l~~~~~~~~~-~~~~~~~~~-~~~~~~  139 (338)
                      +...+++-.|+.. .++++..+++.+++||+.++++    +.|+.++.+|..++....+++.. .+....... ...+..
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~s  160 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMS  160 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHH
Confidence            9999999999986 8899999999999999999999    78899999998777533222111 000111111 011111


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHHHH
Q 019607          140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF  219 (338)
Q Consensus       140 ~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~g~  219 (338)
                      .+   ....+....+....+.        ....+-...|+.++-.......  . ..+.+ .-...+......+....++
T Consensus       161 g~---~y~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~~Gi~~~ia~  225 (290)
T TIGR00776       161 TI---GYLVYVVVAKAFGVDG--------LSVLLPQAIGMVIGGIIFNLGH--I-LAKPL-KKYAILLNILPGLMWGIGN  225 (290)
T ss_pred             HH---HHHHHHHHHHHcCCCc--------ceehhHHHHHHHHHHHHHHHHH--h-cccch-HHHHHHHHHHHHHHHHHHH
Confidence            11   1111122223221111        0111222223333322222111  0 00111 0011111111222235555


Q ss_pred             HHHHHhhh-cCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          220 YYQTRGLK-HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       220 ~l~q~Al~-~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      .+.-.+.+ .-+...++ .....||+++...|+.+|+|..+  +.......+|.++++.|+++.+-
T Consensus       226 ~~y~~~~~~~~~~~~~~-~ls~~~pvia~~~~v~~l~E~~~--~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       226 FFYLFSAQPKVGVATSF-SLSQLGVIISTLGGILILGEKKT--KREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHcccccchhhHH-HHHHHHHHHHHHHHHHHhccCCC--cceeehhHHHHHHHHHHHHHHhc
Confidence            55555666 33332322 33678999999999999999884  44455556888899998877653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.68  E-value=2.6e-06  Score=81.43  Aligned_cols=215  Identities=14%  Similarity=0.138  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccch
Q 019607           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISI  129 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~  129 (338)
                      .|+. ......++..++...+.+..|=+..+..+++.+++.+++|||+++++|.|+.+..+|+.....+ +.+ .   ..
T Consensus        71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~~-~---~~  144 (302)
T TIGR00817        71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-ELS-F---NW  144 (302)
T ss_pred             HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-ccc-c---cH
Confidence            5555 5777888999999999999999999999999999999999999999999999999999765322 111 1   11


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhccCccch---hHH
Q 019607          130 FQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILF-GMASVISKLGFVFLEQGFPTM---LVP  205 (338)
Q Consensus       130 ~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~f-g~~a~l~K~~~~~~~~g~~~l---~~p  205 (338)
                      .-.. .++...   +.........||..+..++.   ...-..+....|..+ ...+..... .....+.+...   ..+
T Consensus       145 ~G~~-~~l~a~---~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~~~~~~l~p~~~~~~~-~~~~~~~~~~~~~~~~~  216 (302)
T TIGR00817       145 AGFL-SAMISN---ITFVSRNIFSKKAMTIKSLD---KTNLYAYISIMSLFLLSPPAFITEG-PPFLPHGFMQAISGVNV  216 (302)
T ss_pred             HHHH-HHHHHH---HHHHHHHHHHHHhhccCCCC---cccHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHhhcccCc
Confidence            1110 111111   11111222333322100110   111222322222211 111111110 00000000000   010


Q ss_pred             -HHHHHHHHHHHHHHH----HHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019607          206 -VCISISICCSGTGFY----YQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVV  280 (338)
Q Consensus       206 -~~l~~~v~~~~~g~~----l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv  280 (338)
                       ..++..+..+...+.    .+..+.++-++..++.. ...+|++++++|+.+|||+....      ..+|.++++.|+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~-~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~  289 (302)
T TIGR00817       217 TKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG-NCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVF  289 (302)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH-hhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHH
Confidence             011111222222222    22356666665444433 67899999999999999987443      3578889999998


Q ss_pred             HHhhh
Q 019607          281 LLVSS  285 (338)
Q Consensus       281 ~l~~s  285 (338)
                      ...+.
T Consensus       290 l~~~~  294 (302)
T TIGR00817       290 LYSRV  294 (302)
T ss_pred             HHHHH
Confidence            87654

specificities overlap.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.63  E-value=6.9e-07  Score=74.21  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 019607            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIG--FLMDIFGALLMLRALSQAPVSVIQPVSGCGL   82 (338)
Q Consensus         5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G--~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l   82 (338)
                      .++-++|.++...|+.+-|++.+..|....        -.++.++.+  +..+...+.+...++...|+++..|+..++.
T Consensus         3 ~~~l~~ai~~ev~g~~~lK~s~~~~~~~~~--------~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~   74 (111)
T PRK15051          3 WLTLVFASLLSVAGQLCQKQATRPVAIGKR--------RKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF   74 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence            345567778888899999998765542110        011223333  3678889999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +++.+++.+++|||++.++|.|++++..|+++++
T Consensus        75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998775

>TIGR00688 rarD rarD protein

Probab=98.59  E-value=3.6e-05  Score=71.75  Aligned_cols=226  Identities=11%  Similarity=0.016  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHH------HH-------------HHhh---hhhHHH----HHHHHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IR-------------AYAV---NKAWVI----GFLMDI   56 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~------l~-------------~llr---~p~W~~----G~~~~~   56 (338)
                      ++.+.++++++++...+..|.. .+.++... -.|.      +.             +..+   ++.|+.    ...+..
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   81 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG   81 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            5778899999999999888873 33443210 0010      00             0011   122221    122255


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHH
Q 019607           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA  136 (338)
Q Consensus        57 ~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~  136 (338)
                      ....+.+.|+...|.+...-+..+..+++.+++.+++|||+++++|.|+.+..+|+..+..++ +.    ..   +  ..
T Consensus        82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~~----~~---~--~~  151 (256)
T TIGR00688        82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-GS----LP---W--EA  151 (256)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-CC----ch---H--HH
Confidence            667788999999999999999999999999999999999999999999999999987764211 11    01   1  12


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHH
Q 019607          137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSG  216 (338)
Q Consensus       137 ~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~  216 (338)
                      +..++   ....+....||.++...       .....+...-..++.........  ...+.......+..++...+.+.
T Consensus       152 l~aa~---~~a~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~g~~t~  219 (256)
T TIGR00688       152 LVLAF---SFTAYGLIRKALKNTDL-------AGFCLETLSLMPVAIYYLLQTDF--ATVQQTNPFPIWLLLVLAGLITG  219 (256)
T ss_pred             HHHHH---HHHHHHHHHhhcCCCCc-------chHHHHHHHHHHHHHHHHHHhcc--CcccccCchhHHHHHHHHHHHHH
Confidence            22221   12222223444332210       01111111111111111111000  00000111112222222334577


Q ss_pred             HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 019607          217 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA  253 (338)
Q Consensus       217 ~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~v  253 (338)
                      .++++.+++++.-++..++.. ...+|++++++|..+
T Consensus       220 i~~~l~~~a~~~~~a~~~s~~-~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       220 TPLLAFVIAANRLPLNLLGLL-QYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHHHHHh
Confidence            899999999999997655543 678999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.57  E-value=6e-07  Score=76.13  Aligned_cols=116  Identities=22%  Similarity=0.306  Sum_probs=89.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc-chHHHH-------HHh-------------hhhhHH-HHHHHHHHH
Q 019607            1 MWELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKVIR-------AYA-------------VNKAWV-IGFLMDIFG   58 (338)
Q Consensus         1 ~~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~-~~~~l~-------~ll-------------r~p~W~-~G~~~~~~G   58 (338)
                      |.-.+..|++||+..+...+.-|.+-+...+.-. .-|.+.       -.+             |+..++ .+-+.-+++
T Consensus         1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls   80 (140)
T COG2510           1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS   80 (140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence            3446788999999999999999999875433210 001100       011             222232 333677888


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +.+.+.|+..++.+.|-|+--.+++++..+|..+++||+|..+|+|+.++++|.+++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999999999999999987653

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.56  E-value=4.8e-05  Score=70.42  Aligned_cols=209  Identities=23%  Similarity=0.256  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccc
Q 019607           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS  128 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~-~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~  128 (338)
                      .+......+..+...++...|.+..+++.....+++.+++. +++|||+++++|.++....+|+.++...+..+...  .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--~  152 (292)
T COG0697          75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--S  152 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--H
Confidence            66677778888899999999999999999999999999997 77799999999999888899998887444332210  0


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhccCcc-chhHH-
Q 019607          129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEII-YGLESGILFGMASVISKLGFVFLEQGFP-TMLVP-  205 (338)
Q Consensus       129 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~l-lg~aaGl~fg~~a~l~K~~~~~~~~g~~-~l~~p-  205 (338)
                      ..-. +..+...+   .........++..+...      ..... +... +.  +..   . ......+.+.. ..... 
T Consensus       153 ~~g~-~~~l~a~~---~~a~~~~~~~~~~~~~~------~~~~~~~~~~-~~--~~~---~-~~~~~~~~~~~~~~~~~~  215 (292)
T COG0697         153 LLGL-LLALAAAL---LWALYTALVKRLSRLGP------VTLALLLQLL-LA--LLL---L-LLFFLSGFGAPILSRAWL  215 (292)
T ss_pred             HHHH-HHHHHHHH---HHHHHHHHHHHhcCCCh------HHHHHHHHHH-HH--HHH---H-HHHHhccccccCCHHHHH
Confidence            0000 11111111   11112222332211100      01111 1111 00  000   0 00001111111 12222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       206 ~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      ...+..++.+..+++++.++++..+...++.. +..+|+.+..+++.++||+.+..      ...|..+++.|++....
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~~  287 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALL-SLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHhc
Confidence            22233344444789999999998886444432 47899999999999999987443      34566788888876653

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.52  E-value=7.1e-07  Score=73.67  Aligned_cols=67  Identities=27%  Similarity=0.399  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019607           51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (338)
Q Consensus        51 G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~  118 (338)
                      |......++.+...|+.+.| ..+.++..++.+|+.+++..++|||+++++|.++.++.+|++++..+
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence            44555588999999999999 68899999999999999999999999999999999999999888633

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.49  E-value=3.1e-05  Score=76.03  Aligned_cols=74  Identities=19%  Similarity=0.281  Sum_probs=65.0

Q ss_pred             hhhhhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        43 lr~p~W~--~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +++|.|.  .=-.+|+.|=-+...||.+-+++-+|=+-..+.+++.+++..++|+|.+..+|.|+.+|+.|+.++.
T Consensus        75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~  150 (334)
T PF06027_consen   75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV  150 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence            4455554  3345788888889999999999999999999999999999999999999999999999999988765

Some of the sequences in this family are annotated as putative membrane proteins.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.48  E-value=8.3e-07  Score=74.02  Aligned_cols=103  Identities=20%  Similarity=0.329  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhhhcCCCCccc---hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 019607           12 TAGNNIGKVLQKKGTVILPPLSFK---LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI   87 (338)
Q Consensus        12 A~~~~~g~vlQ~~aa~~~p~~~~~---~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~   87 (338)
                      +++-+..+-+-||+++..++...+   ......+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus         5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l   84 (113)
T PF10639_consen    5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL   84 (113)
T ss_pred             hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence            455677788889988764433211   2455679999999999999999999999999999999999997 999999999


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhh
Q 019607           88 FSHFYLKEVMNAVDWMGITLAGIGTIG  114 (338)
Q Consensus        88 ls~~~l~~rl~~~~w~gv~l~~~Gl~~  114 (338)
                      .+.++.+|..+++.|+|+.+++.|+.+
T Consensus        85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   85 TGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHHhcCcccchhHHHHHHHHHcCeee
Confidence            996666666688889999999998754

Many members are annotated as potential transmembrane proteins.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.44  E-value=6.1e-05  Score=74.13  Aligned_cols=210  Identities=13%  Similarity=0.112  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHH
Q 019607           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF  137 (338)
Q Consensus        58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~  137 (338)
                      +...+..++...+++..|=+-+++.+|+++++.+++|||++++.|.++.+.+.|+.+...+ |.+       ..+....+
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~-~~~-------~~~~G~~~  198 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK-ELH-------FTWLAFWC  198 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc-cch-------hHHHHHHH
Confidence            3445669999999999999999999999999999999999999999999999999886532 111       11211111


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHHHHHHHHHHHHHH-H---HHhHhhhc--cCccchhHHHHHH
Q 019607          138 VVSILFVLLNGWLRICKHQRREQEMI--EFEVVEEIIYGLESGILFGMASVI-S---KLGFVFLE--QGFPTMLVPVCIS  209 (338)
Q Consensus       138 ~~~~~~v~l~~~~~~~~~~r~~~~~~--~~~~~~a~llg~aaGl~fg~~a~l-~---K~~~~~~~--~g~~~l~~p~~l~  209 (338)
                      . .+..+..+....+.|+.-+.....  ......-..+....|..+-+--.. .   +.......  +....+.....++
T Consensus       199 ~-l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~  277 (350)
T PTZ00343        199 A-MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF  277 (350)
T ss_pred             H-HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH
Confidence            1 111111111222233221110000  000000111112222222211111 1   10000000  0111111112223


Q ss_pred             HHHHHHHHHHHHHHH----hhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          210 ISICCSGTGFYYQTR----GLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       210 ~~v~~~~~g~~l~q~----Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      . ++.+.+.++++|.    .++.-++...+.. ....|++++++|+++|||+...-      ..+|.++++.|+++.+.
T Consensus       278 ~-i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~-~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs~  348 (350)
T PTZ00343        278 K-IFFSGVWYYLYNEVAFYCLGKVNQVTHAVA-NTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYSL  348 (350)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhccchhHHHHH-HHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHhh
Confidence            3 3445556666663    6666665444433 56899999999999999987432      45788899999977653

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.16  E-value=0.00056  Score=64.35  Aligned_cols=202  Identities=20%  Similarity=0.189  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCC----CCCC
Q 019607           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE----QEPS  125 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~----~~~~  125 (338)
                      .=-+++.+.-.++..++...+-+.-|=+.-..+++|++++.+++|+|+++++|.++.+.+.|+..+..++..    ++..
T Consensus        22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~  101 (244)
T PF04142_consen   22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSS  101 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccccc
Confidence            445678999999999999999999999999999999999999999999999999999999999887511111    1100


Q ss_pred             c-----cchhhHHHHH-HHHHHHHHHHHHHH--HHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Q 019607          126 S-----ISIFQLPWLA-FVVSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQ  197 (338)
Q Consensus       126 ~-----~~~~~~~~~~-~~~~~~~v~l~~~~--~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~  197 (338)
                      .     .....+.... .......-.+.+.+  .+.|+...+      .-.+-+-+ ..-|+.+.+.....+......++
T Consensus       102 ~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s------~~~~N~qL-~~~gi~~~~~~~~~~~~~~~~~~  174 (244)
T PF04142_consen  102 SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS------LWIQNMQL-YLFGILFNLLALLLSDGSAISES  174 (244)
T ss_pred             ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh------HHHHHHHH-HHHHHHHHHHHHhcccccccccC
Confidence            0     0111111111 11111111111111  122332211      11223333 33455555555555543333344


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607          198 GFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (338)
Q Consensus       198 g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~  260 (338)
                      |+..-++++.+.....-+..|+..-- -++.-+. +.=..++..+.++..++.+.+||.+...
T Consensus       175 g~f~G~~~~~~~~i~~~a~gGllva~-v~Kyadn-I~K~fa~a~siv~t~~~s~~lf~~~~s~  235 (244)
T PF04142_consen  175 GFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYADN-IVKGFATAVSIVLTAVLSVLLFGFPPSL  235 (244)
T ss_pred             CchhhcchHHHHHHHHHHHhhHHHHH-HHHHHhH-HHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            55444555555433333344444333 5555552 3334445667788888899999887644

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.93  E-value=0.0039  Score=59.82  Aligned_cols=212  Identities=13%  Similarity=0.200  Sum_probs=118.4

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCch--hh-hhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607           37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VI-QPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (338)
Q Consensus        37 ~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~pls--vV-qPl~-~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl  112 (338)
                      +.+++..|||+=+....+...=...|..=+-.+|-.  +. ..++ -++.++..+++..++|||+++-+|+++.+..+|+
T Consensus        60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV  139 (293)
T COG2962          60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV  139 (293)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            456667888876666666666566666666555543  11 1222 3456699999999999999999999999999998


Q ss_pred             hhhc-cCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019607          113 IGVG-AGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKL-  190 (338)
Q Consensus       113 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~-  190 (338)
                      .... ..++           ++|.++..+..+    +.+.+.|+.-.              +....|++.=..-.+--. 
T Consensus       140 ~~~~~~~g~-----------lpwval~la~sf----~~Ygl~RK~~~--------------v~a~~g~~lE~l~l~p~al  190 (293)
T COG2962         140 LIQTWLLGS-----------LPWVALALALSF----GLYGLLRKKLK--------------VDALTGLTLETLLLLPVAL  190 (293)
T ss_pred             HHHHHHcCC-----------CcHHHHHHHHHH----HHHHHHHHhcC--------------CchHHhHHHHHHHHhHHHH
Confidence            7753 2221           234444433322    12222222211              222233322222111111 


Q ss_pred             hH-hhhccCc-----cchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhH
Q 019607          191 GF-VFLEQGF-----PTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTA  264 (338)
Q Consensus       191 ~~-~~~~~g~-----~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~  264 (338)
                      .+ ...+|..     ....+...+.+....+.+-+.+...|-++=|.. ..-.....+|..=.++++.++||+...+-  
T Consensus       191 ~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls-~~G~lqYi~Ptl~fllav~i~~E~~~~~~--  267 (293)
T COG2962         191 IYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLS-TLGFLQYIEPTLMFLLAVLIFGEPFDSDQ--  267 (293)
T ss_pred             HHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHcCCCCCHHH--
Confidence            11 1112211     111222223333334555667777677766632 22223678999999999999999996653  


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 019607          265 RFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       265 ~~~~~~g~~li~~gvv~l~~  284 (338)
                          ...++.+-.++++.+.
T Consensus       268 ----~~~F~~IW~aL~l~~~  283 (293)
T COG2962         268 ----LVTFAFIWLALALFSI  283 (293)
T ss_pred             ----HHHHHHHHHHHHHHHH
Confidence                3556666667665554

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.82  E-value=0.00047  Score=58.20  Aligned_cols=97  Identities=19%  Similarity=0.266  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 019607            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI   84 (338)
Q Consensus         6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~   84 (338)
                      ++=++|.++--.++...|.+...              -+..+|+..+.+....+.+-..|+...|+++..|+- .++.+.
T Consensus         5 l~L~~Ai~~Ev~~t~~LK~s~g~--------------~~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~   70 (120)
T PRK10452          5 ILLALAIATEITGTLSMKWASVS--------------EGNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILF   70 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccC--------------CCcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence            33345556666677777765311              012346788889999999999999999999999996 699999


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           85 LSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        85 ~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +...+.++++|+++..+|.|+.++.+|++++-
T Consensus        71 ~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         71 ITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998874

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.70  E-value=0.00077  Score=64.38  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-HH-------HHHHh------hhh-----hHHHHHHHHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KV-------IRAYA------VNK-----AWVIGFLMDIFGALLML   63 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-~~-------l~~ll------r~p-----~W~~G~~~~~~G~~l~~   63 (338)
                      ++.++++.++++++...++.||..++.++....- ..       .....      .++     .++.|+...++++.++.
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~  227 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM  227 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999888765543321000 00       00011      111     13577888889999999


Q ss_pred             HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        64 ~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .++...|-+.+.++...+.+++.+++.++++|+++..+|+|.+++..|.+...
T Consensus       228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.69  E-value=0.034  Score=53.43  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        47 ~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .|+.=..++.++..++-.||.+.|...-+=.=.+.++++.+++..++|+|.+++||.++.++++|+.++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~  135 (303)
T PF08449_consen   66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT  135 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence            4555567888888999999999999887777799999999999999999999999999999999998876

; GO: 0055085 transmembrane transport

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.64  E-value=0.00039  Score=55.81  Aligned_cols=85  Identities=21%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 019607            9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (338)
Q Consensus         9 l~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~   86 (338)
                      +++.++...++...|...               -.+++.|. ..+.+...++.+-..|+...|++++.|+. .++.+.+.
T Consensus         7 ~~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~   71 (93)
T PF00893_consen    7 LLAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVT   71 (93)
T ss_dssp             HHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            345556666888777732               13334444 55558889999999999999999999997 59999999


Q ss_pred             HHHHHHhccccchhhHHHHHHH
Q 019607           87 IFSHFYLKEVMNAVDWMGITLA  108 (338)
Q Consensus        87 ~ls~~~l~~rl~~~~w~gv~l~  108 (338)
                      +.+.+++||++|..+|.|+.++
T Consensus        72 ~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   72 LVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHH--------HHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHhheeeC
Confidence            9999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.54  E-value=0.0016  Score=60.20  Aligned_cols=110  Identities=16%  Similarity=0.181  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--cc-hHH--------HHHHhh-------hhhH--H--HHHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LKV--------IRAYAV-------NKAW--V--IGFLMDIFGAL   60 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~--~~-~~~--------l~~llr-------~p~W--~--~G~~~~~~G~~   60 (338)
                      .++.++++++++++...+++|+..++.++..  .. .+.        ...+..       ...|  .  .|......++.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYF  207 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999876544211  10 000        001111       1123  2  45555678999


Q ss_pred             HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 019607           61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT  112 (338)
Q Consensus        61 l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl  112 (338)
                      ++..++...|...+..+..++.+++.+++.++++|+++..+|.|+.++..|+
T Consensus       208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999988875

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.49  E-value=0.0023  Score=53.16  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 019607            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA   83 (338)
Q Consensus         6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~-W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~   83 (338)
                      ++=+++.++--.++...|.+.      +         .+++. ++..+..+++.+.+-..|+...|+++..|+- .++.+
T Consensus         5 l~L~~a~~~Ev~~~~~lK~s~------g---------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v   69 (110)
T PRK09541          5 IYLGGAILAEVIGTTLMKFSE------G---------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV   69 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------C---------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence            344566777777887777762      1         22333 3577888999999999999999999999994 68999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        84 ~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .+.+.+.++++|+++..++.|+.++.+|++++-
T Consensus        70 ~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999874

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.44  E-value=0.0022  Score=61.37  Aligned_cols=112  Identities=9%  Similarity=0.032  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch---HH--HH-HHh-------hhh-hHH----HHHHHHHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL---KV--IR-AYA-------VNK-AWV----IGFLMDIFGALLMLR   64 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~---~~--l~-~ll-------r~p-~W~----~G~~~~~~G~~l~~~   64 (338)
                      .+..++++|++|++.+++++||-.++.++.....   ..  .. ...       -++ .|+    .| ...++++.++..
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~  234 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV  234 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3678999999999999999999765433211000   00  00 000       111 121    23 245667888999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      ++...|.+.+.++.-.+.+++.+++..+++|+++..+|+|++++..|+.+.
T Consensus       235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999999998887654

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=97.40  E-value=0.0012  Score=62.54  Aligned_cols=111  Identities=18%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCc----c-chH-----H---HHHHh--------hhhhH----HHHHHHHHHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLS----F-KLK-----V---IRAYA--------VNKAW----VIGFLMDIFG   58 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~----~-~~~-----~---l~~ll--------r~p~W----~~G~~~~~~G   58 (338)
                      ++.+++++++|++..+++.|+...+.++..    . ...     .   .....        .++.|    +.+......+
T Consensus       145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999888754333211    0 000     0   00000        01122    2444556778


Q ss_pred             HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607           59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (338)
Q Consensus        59 ~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~  114 (338)
                      +.+...+++..|.+.+.++.-.+.+++.+++.+++||+++..+|+|.+++.+|+.+
T Consensus       225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            88899999999999999999999999999999999999999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.30  E-value=0.00062  Score=55.05  Aligned_cols=66  Identities=23%  Similarity=0.296  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        50 ~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      .|......++.+...++...|.+.+.++..++.+++.+++..++||+++.++|.|+.++..|+.++
T Consensus        59 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   59 LGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            555556888999999999999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.27  E-value=0.0064  Score=58.19  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-cc----hHH-------HHHHh-------------hhhh-HH----HHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK----LKV-------IRAYA-------------VNKA-WV----IGF   52 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~----~~~-------l~~ll-------------r~p~-W~----~G~   52 (338)
                      .+++++++++++++..+++|||-.++.++.. ..    ...       ...+.             .++. |+    .|+
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i  222 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence            5889999999999999999999654322211 00    000       00000             0111 22    355


Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        53 ~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      ...++++.++..++...+-.-+.++..++.+++.+++.++++|+++..+|+|.+++..|+.+.
T Consensus       223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            666788888888887777778888888888899999999999999999999999888887654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.24  E-value=0.0058  Score=58.25  Aligned_cols=114  Identities=11%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch----H-H---HHHHh------h--h-hhHH----HHHHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K-V---IRAYA------V--N-KAWV----IGFLMDIFGALL   61 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~----~-~---l~~ll------r--~-p~W~----~G~~~~~~G~~l   61 (338)
                      .+..+++++++|++.+++.+||..+..+......    . .   .....      .  + ..|+    .|+...++++.+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999654321100000    0 0   00000      0  1 1233    455567788899


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +..++...|.+.+..+..++.+++.+++.++++|+++..+|+|+.++..|+.+..
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999987764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.24  E-value=0.13  Score=49.25  Aligned_cols=207  Identities=19%  Similarity=0.202  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHhhhccCCCCCCC-Ccc
Q 019607           54 MDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVGAGGEEQEP-SSI  127 (338)
Q Consensus        54 ~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl~~~~w~----gv~l~~~Gl~~l~~~~~~~~~-~~~  127 (338)
                      +-.+|-..|+.++...-+|..-|+. ...|+.+.+.+.++++|.-+.++|+    +++++++|..+-+..+++.+. ++.
T Consensus        54 ~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~  133 (269)
T PF06800_consen   54 FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSK  133 (269)
T ss_pred             HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            4567888899999999999999996 8899999999999999999998885    455556666554422222111 111


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc--CccchhHH
Q 019607          128 SIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQ--GFPTMLVP  205 (338)
Q Consensus       128 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~r~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~--g~~~l~~p  205 (338)
                      ....-....++..-  +....+..+.+-..-..        -+.++--+-|+..+..-..... .....+  .+..+.+-
T Consensus       134 ~~~~kgi~~Ll~st--igy~~Y~~~~~~~~~~~--------~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~~nil~G  202 (269)
T PF06800_consen  134 SNMKKGILALLIST--IGYWIYSVIPKAFHVSG--------WSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSWKNILTG  202 (269)
T ss_pred             cchhhHHHHHHHHH--HHHHHHHHHHHhcCCCh--------hHhHHHHHHHHHHHHHHHhhcc-cccccccchHHhhHHH
Confidence            22221111111111  01111112222111110        1344444555544422222211 000001  11111221


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 019607          206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVL  281 (338)
Q Consensus       206 ~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~  281 (338)
                      ..+.    .+-+.+++...  +.|-+.  +.+..=.+.+++.+.|+.+|+|+...  ........|.++++.|.++
T Consensus       203 ~~w~----ignl~~~is~~--~~G~a~--af~lSQ~~vvIStlgGI~il~E~Kt~--ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  203 LIWG----IGNLFYLISAQ--KNGVAT--AFTLSQLGVVISTLGGIFILKEKKTK--KEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHH----HHHHHHHHhHH--hccchh--hhhHHhHHHHHHHhhhheEEEecCch--hhHHHHHHHHHHHHHhhhc
Confidence            1111    22334444443  555432  11113346899999999999998633  3345456788877777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.16  E-value=0.0088  Score=49.69  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 019607            6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA   83 (338)
Q Consensus         6 ~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~-~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~   83 (338)
                      ..=++|.++=-.++...|+..               -.++|.|. .-.......+.+...|+...|+++..++- ..+.+
T Consensus        10 ~~L~~Ai~~Ev~~t~~Lk~s~---------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v   74 (109)
T PRK10650         10 AWLALAIVLEIVANIFLKFSD---------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIA   74 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            333445555555666666541               13344443 44556677888889999999999999995 68999


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        84 ~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      .+.+.+.++++|+++..+|.|+.++..|++++
T Consensus        75 ~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         75 ATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998775

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.11  E-value=0.0064  Score=60.34  Aligned_cols=114  Identities=11%  Similarity=0.078  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc-cc--h-------HHHHHHh--hh--hhHH-------HHHH----HHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK--L-------KVIRAYA--VN--KAWV-------IGFL----MDIF   57 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~-~~--~-------~~l~~ll--r~--p~W~-------~G~~----~~~~   57 (338)
                      ++.++++.|++|+++.+++|||-.++-|+.. ..  .       -.+..+.  ++  +.|+       ..++    ...+
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l  268 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV  268 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence            4788999999999999999999877655421 00  0       0001112  11  1121       1122    1234


Q ss_pred             HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        58 G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      ++.++..++...+-+.+-...-+..+|+++++..+++|+++..+++|.+++..|+....
T Consensus       269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            77778888888888888888888999999999999999999999999999999997764

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.11  E-value=0.0016  Score=55.50  Aligned_cols=69  Identities=33%  Similarity=0.448  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          209 SISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       209 ~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      ....+.+.+++++.-+|+|.|++..+. |-.=.+|+..+.+++++|||+....      ..+|..++++|+++++.
T Consensus        71 ilSGla~glswl~Yf~ALk~G~as~Vv-Pldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs~  139 (140)
T COG2510          71 ILSGLAGGLSWLLYFRALKKGKASRVV-PLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVSL  139 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCcceEE-EcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEec
Confidence            344456677888888999999964333 3345689999999999999998553      34788999999887653

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.09  E-value=0.0087  Score=49.35  Aligned_cols=68  Identities=24%  Similarity=0.265  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      +..-+......|.+...|+...|+++..++- ..+.+.+.+.+.+++||+++..+|.|+.++..|++++
T Consensus        32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            4466778888899999999999999999995 6999999999999999999999999999999999876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0098  Score=49.16  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           46 KAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        46 p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      .+.+.....+.+.|.+...|+...|+.+..++ ...+.+.+...+..+++|+++..+|+|+.++..|++++
T Consensus        31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            33446778889999999999999999999999 58999999999999999999999999999999998876

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.91  E-value=0.032  Score=46.20  Aligned_cols=66  Identities=18%  Similarity=0.159  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          213 CCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       213 ~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      ++....+++...++|.-|...+-...+ ..++...++|..+|||+.+..      ..+|..++++|++.++.+
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~~~  110 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILGST  110 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcc
Confidence            344567888888999988544433324 788999999999999998443      457889999999888754

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.77  E-value=0.3  Score=46.44  Aligned_cols=172  Identities=16%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccCCCCCCCCccchhhHHHHHHHHHH
Q 019607           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI  141 (338)
Q Consensus        62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (338)
                      ...++...|+.+.-.+=-.+.+.-+.++    .||  .+|.+++++.+.|+.++...++...+.++  .-.. +++..  
T Consensus        88 FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp--~Gv~-~Al~A--  156 (292)
T COG5006          88 FYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDP--VGVA-LALGA--  156 (292)
T ss_pred             HHHHHHhccchhhhhhhhccHHHHHHHh----ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCH--HHHH-HHHHH--
Confidence            4678888899887766333333322222    233  35655666677777666533333222111  1111 11211  


Q ss_pred             HHHHHHHHHHHhhccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCccchhHH----HHHHHHHHHHH
Q 019607          142 LFVLLNGWLRICKHQR-REQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP----VCISISICCSG  216 (338)
Q Consensus       142 ~~v~l~~~~~~~~~~r-~~~~~~~~~~~~a~llg~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p----~~l~~~v~~~~  216 (338)
                       .++++.|-...+|.. ..+.      .+    |++.|...+...++- ++.   .|.-..+++|    ..+.+.++.++
T Consensus       157 -G~~Wa~YIv~G~r~g~~~~g------~~----g~a~gm~vAaviv~P-ig~---~~ag~~l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         157 -GACWALYIVLGQRAGRAEHG------TA----GVAVGMLVAALIVLP-IGA---AQAGPALFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             -hHHHHHHHHHcchhcccCCC------ch----HHHHHHHHHHHHHhh-hhh---hhcchhhcChHHHHHHHHHHHHhcc
Confidence             223444444444433 2221      11    222222222111110 111   1222234444    33444455556


Q ss_pred             HHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607          217 TGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (338)
Q Consensus       217 ~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~  260 (338)
                      +=|-+.|.++++=+.-.-++- .-.||..+.+.|.++|||+...
T Consensus       222 lPYsLEmiAL~rlp~~~F~~L-lSLePa~aAl~G~i~L~e~ls~  264 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTL-LSLEPALAALSGLIFLGETLTL  264 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHH-HHhhHHHHHHHHHHHhcCCCCH
Confidence            668899999998874332222 4579999999999999999844

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.50  E-value=0.042  Score=52.53  Aligned_cols=109  Identities=12%  Similarity=0.029  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCcc------ch-HHHH--H--------Hhhhhh-HHH----HHHHHHHHHHHHHH
Q 019607            7 LTLAATAGNNIGKVLQKKGTVILPPLSF------KL-KVIR--A--------YAVNKA-WVI----GFLMDIFGALLMLR   64 (338)
Q Consensus         7 lAl~aA~~~~~g~vlQ~~aa~~~p~~~~------~~-~~l~--~--------llr~p~-W~~----G~~~~~~G~~l~~~   64 (338)
                      +.++++++++...+++||...+......      .+ ....  .        ...+|. |+.    +.....+++.+...
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999997432211100      00 0000  0        001122 111    11134477888999


Q ss_pred             HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        65 AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      +++..|-+.+.++.-++.+++.+++.++++|+++..+|.|++++..|+.++
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987666554

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.39  E-value=0.043  Score=50.57  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccch-------HHH--HHHh---------hhhhHH--HHHHHHHHHHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KVI--RAYA---------VNKAWV--IGFLMDIFGALL   61 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~-------~~l--~~ll---------r~p~W~--~G~~~~~~G~~l   61 (338)
                      +.++.++++++++++...+++++-. +.+......       ..+  ....         +...++  .|+...+.++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999866 322211100       000  0001         111112  344444457888


Q ss_pred             HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        62 ~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      ...++...+...+.++.....+++..++..+++|+++..+|.|++++..|.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999988888877654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.18  E-value=0.02  Score=54.71  Aligned_cols=111  Identities=18%  Similarity=0.196  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHH---------Hhhhh--------hHH-HHHHHHHHHHHHHHHHH
Q 019607            5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRA---------YAVNK--------AWV-IGFLMDIFGALLMLRAL   66 (338)
Q Consensus         5 v~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~---------llr~p--------~W~-~G~~~~~~G~~l~~~AL   66 (338)
                      +++.-++ ..++...++-++.....|..-...+.+.+         |.++|        .|+ +=-.+-..|..++.-||
T Consensus        40 l~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~  118 (346)
T KOG4510|consen   40 LLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYAL  118 (346)
T ss_pred             ceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHH
Confidence            3445555 77777788777776544432111122211         11222        233 11223456777788888


Q ss_pred             hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           67 SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        67 ~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      ...|++=..=+.-.+.+|+.+++..+||||.+..|-++......|++++.
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv  168 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV  168 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence            88887765556677888999999999999999999999999999998875

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.92  E-value=2  Score=42.60  Aligned_cols=114  Identities=18%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------------C---CccchHHHHHHhhh---hhHHHHH---HHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILP----------------P---LSFKLKVIRAYAVN---KAWVIGF---LMDI   56 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p----------------~---~~~~~~~l~~llr~---p~W~~G~---~~~~   56 (338)
                      .+++...+++++|++-=.+-||+. +.=+                +   .....+....++++   .-|..++   .+-.
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W~   84 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALWG   84 (345)
T ss_pred             HHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            568999999999999888899883 2211                0   00011222334442   3344443   3556


Q ss_pred             HHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhcccc---chhhH----HHHHHHHHHHhhhc
Q 019607           57 FGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVDW----MGITLAGIGTIGVG  116 (338)
Q Consensus        57 ~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~~ls~~~l~~rl---~~~~w----~gv~l~~~Gl~~l~  116 (338)
                      +|-..|..+.+..-+|+-+|+. ...++++.++...+++|--   +..++    +|++++++|+.+.+
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s  152 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG  152 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence            7778899999999999999994 8899999999999999654   44443    57888888887765

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=95.41  E-value=0.28  Score=46.66  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-ccchHHH--------------HHHhhhhhHH-HHHHHHH----HHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVI--------------RAYAVNKAWV-IGFLMDI----FGALLM   62 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~-~~~~~~l--------------~~llr~p~W~-~G~~~~~----~G~~l~   62 (338)
                      .++.+|+.+..|.+.=-+.-||+.+..++. +...+..              ..-+.+|.=+ .++...+    +=|.++
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence            468889999999888888888887644322 1111111              0122233322 4444443    345679


Q ss_pred             HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        63 ~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .+||+-.|-.----++++...+++..+..++||++|..||.++.+++.+..+..
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999988887654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.16  E-value=0.24  Score=47.43  Aligned_cols=112  Identities=22%  Similarity=0.166  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc----ch-----HHH--HHH-----hhhhhHH----HHHHHHHHHHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KVI--RAY-----AVNKAWV----IGFLMDIFGALL   61 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~----~~-----~~l--~~l-----lr~p~W~----~G~~~~~~G~~l   61 (338)
                      ..++..+++|+++|+.-.+.=|+..  .++.+.    .-     ..+  ..+     ..++.+|    .|+. -.+++.+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~  227 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF  227 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence            4588999999999988877766542  222211    00     000  011     0111222    4555 5777888


Q ss_pred             HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHhhhc
Q 019607           62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG  116 (338)
Q Consensus        62 ~~~AL~-~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w----~gv~l~~~Gl~~l~  116 (338)
                      .+.++. ..+.+..-++...+.+++.+++.+++||+.+++|+    +|++++..|..+++
T Consensus       228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            888888 88999999999999999999999999999999999    99999888876653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=94.78  E-value=0.31  Score=39.85  Aligned_cols=62  Identities=29%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          216 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       216 ~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      ..++.++..|++..+. .++ +..-.+|++..++|..+|+|+.+..      ...+.+++.+|++++...
T Consensus        46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIAWS  107 (113)
T ss_pred             HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence            4667888889998884 333 4456799999999999999988554      246778899999888754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=94.77  E-value=0.7  Score=39.38  Aligned_cols=71  Identities=17%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHH--HHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       208 l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv--~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      .+..+++..++++++..++++.+...+. |.....+....+.+.  .+|||+.+..      ..+|.+++++|++.+.++
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ay-p~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAY-PLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhccC
Confidence            3455667889999999999998854433 222233444444454  4899988332      467999999999988753

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=94.28  E-value=0.09  Score=50.65  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhhhhcCCCCccch--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH
Q 019607           13 AGNNIGKVLQKKGTVILPPLSFKL--KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH   90 (338)
Q Consensus        13 ~~~~~g~vlQ~~aa~~~p~~~~~~--~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~   90 (338)
                      +|.++=.++..|+.++-...+++.  .....-++...++.=.++|+.|-.++.+.|-+-..+--|=+=..-++|+.+++.
T Consensus        52 lCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst  131 (372)
T KOG3912|consen   52 LCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFST  131 (372)
T ss_pred             HHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHH
Confidence            567777778777766532221110  000112444456777899999999999999999999999999999999999999


Q ss_pred             HHhccccchhhHHHHHHHHHHHhhhc
Q 019607           91 FYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        91 ~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      -+++++++.++|.|+..+..|++.++
T Consensus       132 ~~Ln~ti~~~qWl~i~fv~lGlviVg  157 (372)
T KOG3912|consen  132 MFLNRTITGRQWLGILFVSLGLVIVG  157 (372)
T ss_pred             HHHhcccchhhHHHHHHHHhhhheee
Confidence            99999999999999999999998876

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=93.86  E-value=0.25  Score=39.51  Aligned_cols=65  Identities=32%  Similarity=0.386  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607          212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  283 (338)
Q Consensus       212 v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  283 (338)
                      ++.+..++.+.+++++..+...++. ....+|+.+.++|..+++|+.+.  .    ...|..+++.|++.+.
T Consensus        61 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~pv~~~i~~~~~~~e~~~~--~----~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   61 LLGTALAYLLYFYALKYISASIVSI-LQYLSPVFAAILGWLFLGERPSW--R----QIIGIILIIIGVVLIS  125 (126)
T ss_pred             ccceehHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHcCCCCCH--H----HHHHHHHHHHHHHHHH
Confidence            3345778889999999988655443 35689999999999999998733  2    3567778888887653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=93.22  E-value=0.96  Score=43.09  Aligned_cols=115  Identities=10%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhh--cCCCCccch-----HH----HHHHhh-----------h--------hhHHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYAV-----------N--------KAWVIG   51 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~--~~p~~~~~~-----~~----l~~llr-----------~--------p~W~~G   51 (338)
                      +.+.+++++|+++++..++++||..+  +.++.....     ..    ......           +        ..|..+
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            35788999999999999999998765  322211000     00    000000           0        012112


Q ss_pred             HHHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           52 FLMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        52 ~~~~~~G~----~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .......+    .+.+.++...+-+-..-......+++.+++..+++|+++..++.|.+++..|+....
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            11111111    233345655566666666667777999999999999999999999999999987764

specificities overlap.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=93.05  E-value=10  Score=37.65  Aligned_cols=64  Identities=23%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        53 ~~~~~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      .++.+=--+|.++++..|-+.-|...-.-..-|++++..+|+||+++++|.+..+...|+..+-
T Consensus       100 ~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  100 LIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            3555555589999999999999999999999999999999999999999999999999988864

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=92.59  E-value=5.2  Score=33.13  Aligned_cols=65  Identities=23%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 019607          212 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVS  284 (338)
Q Consensus       212 v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~  284 (338)
                      +++-.+.|++..+++++=|..+  ..+  +-...+...++|+.+|||+...  .    ...|..+++.|++.+-.
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~i--AYavw~GlG~v~~~l~g~~~f~e~~~~--~----~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGI--AYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhc
Confidence            3455678888888999877321  222  3345566689999999998833  2    45788999999988843

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=92.05  E-value=4.5  Score=33.51  Aligned_cols=77  Identities=31%  Similarity=0.423  Sum_probs=50.1

Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHH
Q 019607          197 QGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLL  274 (338)
Q Consensus       197 ~g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~l  274 (338)
                      ||+.......   ..+++-...|++...++++=|.-  ..++  +-.-.+..+++|+.+|||+.  ++.    ..+|..+
T Consensus        25 ~gf~~~~~~i---l~~v~~~~sf~~Ls~alk~ipvg--vAYAiW~GiG~v~~~l~g~~~f~E~l--~~~----~~~gl~L   93 (106)
T COG2076          25 DGFTRLWPSI---LTIVGYGLSFYLLSLALKTIPLG--VAYAIWTGIGIVGTALVGVLLFGESL--SLI----KLLGLAL   93 (106)
T ss_pred             hcccccchHH---HHHHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHhcCCcC--CHH----HHHHHHH
Confidence            5665444332   22334456788888899986621  2233  44455566889999999988  433    3568889


Q ss_pred             HHHHHHHHhh
Q 019607          275 IMIGVVLLVS  284 (338)
Q Consensus       275 i~~gvv~l~~  284 (338)
                      +++|++.+-.
T Consensus        94 iiaGvi~Lk~  103 (106)
T COG2076          94 ILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHhhh
Confidence            9999987743

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=90.97  E-value=0.93  Score=37.62  Aligned_cols=98  Identities=24%  Similarity=0.366  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhhhc---CCCCcc----chHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 019607           15 NNIGKVLQKKGTVI---LPPLSF----KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS   86 (338)
Q Consensus        15 ~~~g~vlQ~~aa~~---~p~~~~----~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl~-~~~l~~~~   86 (338)
                      .+.-+-+-||+...   +.+.+.    -.+.++.++.++.++.=++++-.|..+.+.-|+-.|+++.-|+- +++..|++
T Consensus        15 WG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta   94 (125)
T KOG4831|consen   15 WGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTA   94 (125)
T ss_pred             HccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHH
Confidence            34555666776642   222111    12356778899999999999999999999999999999999995 88999999


Q ss_pred             HHHHHHhccccch-hhHHHHHHHHHHHh
Q 019607           87 IFSHFYLKEVMNA-VDWMGITLAGIGTI  113 (338)
Q Consensus        87 ~ls~~~l~~rl~~-~~w~gv~l~~~Gl~  113 (338)
                      .++ ..++|+... +...|..+++.|+.
T Consensus        95 ~~G-~~LGE~~~g~~a~lGt~liv~Gi~  121 (125)
T KOG4831|consen   95 IFG-KALGEETQGGLALLGTSLIVFGIW  121 (125)
T ss_pred             HHH-HHhccccccceeehhhhHHhhhhh
Confidence            988 566777765 55568888888864

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=90.69  E-value=6.1  Score=32.78  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 019607          211 SICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLL  282 (338)
Q Consensus       211 ~v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l  282 (338)
                      .++.....|++..+++|+=|.-  ...+  +-...+...++|+.+|||+.  ++.    ...|..+++.|++.+
T Consensus        41 ~~~~~~~sf~~Ls~al~~lpvg--vAYAvW~GiG~v~~~~ig~~~f~e~~--~~~----~~~gi~lIi~GVi~l  106 (109)
T PRK10650         41 SLAAVLAAFSALSQAVKGIDLS--VAYALWGGFGIAATLAAGWILFGQRL--NRK----GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHh
Confidence            3445567888888899976621  1222  33445566889999999988  432    457888999999876

>TIGR00803 nst UDP-galactose transporter

Probab=90.19  E-value=8.5  Score=34.91  Aligned_cols=46  Identities=11%  Similarity=0.076  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 019607          214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS  260 (338)
Q Consensus       214 ~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~  260 (338)
                      ...+|-.+-.--++..+.... ...+..+++...++++.+|||+...
T Consensus       161 ~~a~~~~~v~~vlk~~~~~~~-~~~~~~~~~~s~lls~~~f~~~ls~  206 (222)
T TIGR00803       161 LNVGGGLCIGGVVRYADNTTK-SFVTALSIILSTLASVRLFDAKISS  206 (222)
T ss_pred             HHHhcCceeeehhHHhHHHHH-HHHHHHHHHHHHHHHHHHhcCCccH
Confidence            333443333334444443322 2336789999999999999998743

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=90.07  E-value=3.1  Score=41.10  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcc--chH---HH----------HHHhhhhhHHHHHHHHHHHHHH-HHHH
Q 019607            2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF--KLK---VI----------RAYAVNKAWVIGFLMDIFGALL-MLRA   65 (338)
Q Consensus         2 ~~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~--~~~---~l----------~~llr~p~W~~G~~~~~~G~~l-~~~A   65 (338)
                      .++-+++++||.+||+.+++|++-.++.|....  ..+   .+          +.-+++-.|-.......+|+.+ ++.-
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence            356789999999999999999999877553210  000   00          0112222343333444455443 5555


Q ss_pred             HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        66 L~~~plsv-------VqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +.+.|+.+       +.-=+-++-+.+++...++.|++++...++|.+++.+|.++..
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            55555533       2222345667788999999999999999999999999998875

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=90.06  E-value=5.9  Score=32.61  Aligned_cols=64  Identities=22%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhhhcCCchhHHHHH--HHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607          212 ICCSGTGFYYQTRGLKHGRAIVVSTCA--AVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  283 (338)
Q Consensus       212 v~~~~~g~~l~q~Al~~G~~~~~s~~~--tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  283 (338)
                      +++-...|++..+++|.=|.-  ...+  +-...+...++|+.+|||+.  ++.    ..+|..+++.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~g--vaYAvW~GiG~v~~~lig~~~f~e~~--~~~----~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVG--TAYAVWTGIGAVGAAITGIVLLGESA--SPA----RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcH--hHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHHHHhhh
Confidence            445567888888899976621  1222  44455666899999999988  433    3568889999998873

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=87.23  E-value=14  Score=30.99  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCC--CCccchH----------------------------HHHHHhh-----h-hh
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILP--PLSFKLK----------------------------VIRAYAV-----N-KA   47 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p--~~~~~~~----------------------------~l~~llr-----~-p~   47 (338)
                      +..+++.|.++.+.=.+++|+.-++..  ....++-                            ......+     . ..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            357889999999999988888776530  0000000                            0001111     2 22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc---CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q 019607           48 WVIGFLMDIFGALLMLRALSQA---PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG  114 (338)
Q Consensus        48 W~~G~~~~~~G~~l~~~AL~~~---plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~  114 (338)
                      |+.-+..-..++..|...+...   .-.--+=+...--+++.+++..+++|+++..++.|+.++..|...
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3333344445556655544322   222223334567788999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=85.62  E-value=21  Score=30.13  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHh
Q 019607          212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLV  283 (338)
Q Consensus       212 v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~  283 (338)
                      +++-.+.|++..++++.=|..++=..-+-...+...++|+.+|||+....      ..+|..+++.|++.+-
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~  102 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK  102 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence            44556788988989987763221111123345555889999999988432      4578889999998874

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=84.68  E-value=9.1  Score=38.50  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHH---HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhccC
Q 019607           42 YAVNKAWVIGFLMDIFGALLML---RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG  118 (338)
Q Consensus        42 llr~p~W~~G~~~~~~G~~l~~---~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~~  118 (338)
                      +.++..=-.++..-.+.|+.|.   .||++-.++-..=+-..+=.|++.++..+..||++..+.+++.+...|++.+..+
T Consensus       153 ~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~  232 (416)
T KOG2765|consen  153 LTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMG  232 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEec
Confidence            3333444456666666666654   4777777777777788899999999999999999999999999999999998755


Q ss_pred             CCCC
Q 019607          119 GEEQ  122 (338)
Q Consensus       119 ~~~~  122 (338)
                      +.++
T Consensus       233 ~s~~  236 (416)
T KOG2765|consen  233 DSKQ  236 (416)
T ss_pred             cccc
Confidence            4433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=83.89  E-value=24  Score=34.73  Aligned_cols=37  Identities=11%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhh
Q 019607           79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV  115 (338)
Q Consensus        79 ~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l  115 (338)
                      ...-++..+++..+++|+++..+++|.+++..|+...
T Consensus       310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            3455688899999999999999999999999998764

>TIGR00803 nst UDP-galactose transporter

Probab=80.86  E-value=7.9  Score=35.11  Aligned_cols=110  Identities=15%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHH-----------HHH-------Hh-------h-hhhHHHHHHHHH
Q 019607            3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKV-----------IRA-------YA-------V-NKAWVIGFLMDI   56 (338)
Q Consensus         3 ~av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~-----------l~~-------ll-------r-~p~W~~G~~~~~   56 (338)
                      .++...+.+..+.+...+.|++.-++.+. ....+.           ...       ..       . .+.+|.-..+..
T Consensus        85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  163 (222)
T TIGR00803        85 VGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNV  163 (222)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHH
Confidence            34555566677778999999998654221 100000           000       00       0 122333334444


Q ss_pred             HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q 019607           57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI  113 (338)
Q Consensus        57 ~G~~l~~~AL~~~plsvVqPl~~~~l~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~  113 (338)
                      .|..+-...+...+-...-=+..++.+++.+++.++++++++...|.|+.++..|+.
T Consensus       164 ~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       164 GGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             hcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            554454444555555566666788999999999999999999999999998877653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.85
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.58
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.72
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.26

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.85  E-value=3.6e-08  Score=80.41  Aligned_cols=100  Identities=17%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l   82 (338)
                      +.++-+++.++...++.+.|++.      +        .-|.++++.+....++++.+...|++..|++.+.|+ ..++.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s~------~--------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~   68 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc------C--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence            45666788889999999999863      1        113466778999999999999999999999999999 69999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhcc
Q 019607           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA  117 (338)
Q Consensus        83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~~  117 (338)
                      +++.+++.+++||+++..+|.|+.+++.|++++..
T Consensus        69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988863

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.58  E-value=9.9e-08  Score=80.97  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 019607            4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL   82 (338)
Q Consensus         4 av~lAl~aA~~~~~g~vlQ~~aa~~~p~~~~~~~~l~~llr~p~W~~G~~~~~~G~~l~~~AL~~~plsvVqPl-~~~~l   82 (338)
                      +.++-+++.++...++.+.|++.      +        ..+.++++.|+...++++.+...|+...|++.+.|+ ..++.
T Consensus         3 ~~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p   68 (137)
T 2i68_A            3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI   68 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence            34556678888889999999863      1        123466779999999999999999999999999999 79999


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhc
Q 019607           83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG  116 (338)
Q Consensus        83 ~~~~~ls~~~l~~rl~~~~w~gv~l~~~Gl~~l~  116 (338)
                      +++.+++.++++|+++..+|+|++++++|++++.
T Consensus        69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998875

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.72  E-value=0.00019  Score=60.60  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       210 ~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vlGE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      ..+++..+++++++++++..+...+....+...|+..+++|+.+|||+....      ..+|.++++.|++++...
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            4455677889999999999996554443356799999999999999998553      357889999999988653

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.26  E-value=0.0051  Score=49.60  Aligned_cols=97  Identities=18%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 019607          175 LESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLAL  254 (338)
Q Consensus       175 ~aaGl~fg~~a~l~K~~~~~~~~g~~~l~~p~~l~~~v~~~~~g~~l~q~Al~~G~~~~~s~~~tva~pvvav~~Gv~vl  254 (338)
                      +.++++-.....+.|..     +|+..   ++.....+++..+++++.+++++..|...+....+-..|+...++|+.+|
T Consensus         8 ~~a~~~e~~~~~~lK~s-----~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~   79 (110)
T 3b5d_A            8 GGAILAEVIGTTLMKFS-----EGFTR---LWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF   79 (110)
T ss_pred             HHHHHHHHHHHHHHHhc-----cCcch---HHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHh
Confidence            33444444445556653     23321   22223444556778899999999999655443325678999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 019607          255 GERLPSAPTARFSLLLGWLLIMIGVVLLVSS  285 (338)
Q Consensus       255 GE~~~~~~~~~~~~~~g~~li~~gvv~l~~s  285 (338)
                      ||+.+.  .    ..+|..+++.|++.+...
T Consensus        80 ~E~~s~--~----~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           80 GQRLDL--P----AIIGMMLICAGVLIINLL  104 (110)
T ss_pred             CCCCCH--H----HHHHHHHHHHHHHHHhcC
Confidence            999833  2    457889999999988653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00