Citrus Sinensis ID: 019630

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MGRRQTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQEEEEEEERCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFRRISTSQATL
ccccccccccHHHHHHHHHHHHHHHcEEEEEEEEEccccccccccccccccccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHcccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEccccccccccccEEEEEEcccHHHHHHHHccccccccccccEEEEEEccccEEEEEEccccccc
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccEEcccccccEEEEccccccccHHHHHHHHHHHcccccccccccEEEEcccccccccccccEEEEccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEccccccEccccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEccccHHHHHHHHccccccccccccEEEEEcccEcEEEEEEEcccccc
mgrrqtdseLSRLAVLIIFVLGCISFFMFYFCfsvgykpstshvsldstlsfsgggqeeeeEEERCCRGIEHLELWGDAVkwganfkvnsskeccmackdtceaedrpcscdswvfcgdkqacgsrfgecwlkkqkdalepnprdardqvmwtsglifgkgegiVRLETEYGTLhvkllpdsapLSVAYMLELLASRHcvgcqfhraesrgthwdtegnhienapggygppfaliqgslethsitfkeiplevcstirrgsvawvgsgPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIArlptkqevwSNVNvsvlekpiplrfrristsqatl
mgrrqtdselsrLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQEEEEEEERCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKdalepnprdardqVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIArlptkqevwsnvnvsvlekpiplrfrristsqatl
MGRRQTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQeeeeeeeRCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFRRISTSQATL
***********RLAVLIIFVLGCISFFMFYFCFSVGYK***************************CCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKK*************DQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFR*********
************LAVLIIFVLGCISFFMFYFCFSVGY*****************************CRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECW*************************IFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRF**********
*********LSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHV**********************CRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFRR********
*******SELSRLAVLIIFVLGCISFFMFYFCFSVGYKPS**********************EERCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEP****ARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFRRIST*****
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGRRQTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQEEEEEEERCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDKQACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNVSVLEKPIPLRFRRISTSQATL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q5ZLV2161 Peptidyl-prolyl cis-trans yes no 0.408 0.857 0.242 0.0001
Q54E95161 Peptidyl-prolyl cis-trans yes no 0.405 0.850 0.281 0.0002
Q9D6L8161 Peptidyl-prolyl cis-trans yes no 0.408 0.857 0.235 0.0005
Q812D3161 Peptidyl-prolyl cis-trans yes no 0.408 0.857 0.235 0.0007
>sp|Q5ZLV2|PPIL3_CHICK Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1 Back     alignment and function desciption
 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 19/157 (12%)

Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA 224
           V L T+ G + ++L  +  P +    L L AS +  GC FHR        + +G  ++  
Sbjct: 3   VTLHTDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHR--------NIKGFMVQT- 53

Query: 225 PGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFISLANHN 279
               G P    +G        F++   E      RG V+   +GP     +FFI+     
Sbjct: 54  ----GDPLGTGKGGTSIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQP 109

Query: 280 EWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVN 316
                YTVFG V+ + +   + + +LP  ++ +  +N
Sbjct: 110 HLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 145
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Gallus gallus (taxid: 9031)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q54E95|PPIL3_DICDI Peptidyl-prolyl cis-trans isomerase-like 3 OS=Dictyostelium discoideum GN=ppil3 PE=3 SV=1 Back     alignment and function description
>sp|Q9D6L8|PPIL3_MOUSE Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1 Back     alignment and function description
>sp|Q812D3|PPIL3_RAT Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
255571055339 conserved hypothetical protein [Ricinus 0.964 0.961 0.699 1e-135
224136402339 predicted protein [Populus trichocarpa] 0.985 0.982 0.652 1e-128
359474420345 PREDICTED: uncharacterized protein LOC10 0.994 0.973 0.650 1e-125
359497106345 PREDICTED: uncharacterized protein LOC10 0.994 0.973 0.644 1e-124
224126439335 predicted protein [Populus trichocarpa] 0.982 0.991 0.639 1e-123
356568563326 PREDICTED: uncharacterized protein LOC10 0.952 0.987 0.633 1e-123
449519176332 PREDICTED: uncharacterized protein LOC10 0.979 0.996 0.630 1e-122
449432378332 PREDICTED: uncharacterized protein LOC10 0.979 0.996 0.627 1e-121
224067528326 predicted protein [Populus trichocarpa] 0.952 0.987 0.653 1e-121
225453332338 PREDICTED: uncharacterized protein LOC10 0.961 0.961 0.661 1e-120
>gi|255571055|ref|XP_002526478.1| conserved hypothetical protein [Ricinus communis] gi|223534153|gb|EEF35869.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/333 (69%), Positives = 265/333 (79%), Gaps = 7/333 (2%)

Query: 1   MGRRQTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQEEE 60
           MGRR TDSE+ R A+LI+F++  IS  + Y CFS+ ++P+TS  SLDS        +  E
Sbjct: 1   MGRRHTDSEVGRYALLILFLMATISCCLVYLCFSIVFRPTTS--SLDSGDLVL---ENTE 55

Query: 61  EEEERCCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFCGDK 120
            +   CC GIEHLELWGDAVKWG++FKVNSSKECCMACK  C  ED PC CDSWVFCG K
Sbjct: 56  RDHNDCCGGIEHLELWGDAVKWGSDFKVNSSKECCMACKHMCSGEDGPCLCDSWVFCGHK 115

Query: 121 QACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVKLLP 180
            +CGS FGECWLKKQKD+LEP+ RD+ DQVMWTSGL+FGKGEGIV +ETEYG LHVKLLP
Sbjct: 116 SSCGSHFGECWLKKQKDSLEPDRRDSGDQVMWTSGLVFGKGEGIVGMETEYGMLHVKLLP 175

Query: 181 DSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLE 240
           D AP SV+Y+LELL +RHC GC F+RAESRG  WD EGNHI+ AP  YGPPFALIQG+LE
Sbjct: 176 DCAPQSVSYILELLTARHCAGCHFYRAESRGRFWDAEGNHIKQAP--YGPPFALIQGTLE 233

Query: 241 THSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMAIAE 300
            H   F EIP E C TIRRGS+AWVGSGPEFFISLANHNEWKK YTVFG VLPEDM I E
Sbjct: 234 AHGTIFNEIPKEACPTIRRGSIAWVGSGPEFFISLANHNEWKKAYTVFGFVLPEDMGIVE 293

Query: 301 RIARLPTKQEVWSNVNVSVLEKPIPLRFRRIST 333
           +IA LPTK EVWSN+NV VLE+P+PL FRRI +
Sbjct: 294 KIANLPTKAEVWSNINVHVLEQPVPLHFRRIRS 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136402|ref|XP_002326851.1| predicted protein [Populus trichocarpa] gi|222835166|gb|EEE73601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474420|ref|XP_003631460.1| PREDICTED: uncharacterized protein LOC100853434 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359497106|ref|XP_003635426.1| PREDICTED: uncharacterized protein LOC100854739 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126439|ref|XP_002329554.1| predicted protein [Populus trichocarpa] gi|222870263|gb|EEF07394.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356568563|ref|XP_003552480.1| PREDICTED: uncharacterized protein LOC100808052 [Glycine max] Back     alignment and taxonomy information
>gi|449519176|ref|XP_004166611.1| PREDICTED: uncharacterized protein LOC101228726 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432378|ref|XP_004133976.1| PREDICTED: uncharacterized protein LOC101208677 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224067528|ref|XP_002302500.1| predicted protein [Populus trichocarpa] gi|222844226|gb|EEE81773.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453332|ref|XP_002270739.1| PREDICTED: uncharacterized protein LOC100241055 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2130474343 AT4G17070 [Arabidopsis thalian 0.985 0.970 0.576 1.7e-107
TAIR|locus:2119191328 AT4G33380 [Arabidopsis thalian 0.198 0.204 0.337 9e-05
UNIPROTKB|Q5ZLV2161 PPIL3 "Peptidyl-prolyl cis-tra 0.408 0.857 0.242 0.00041
DICTYBASE|DDB_G0291734161 ppil3 "cyclophilin-type peptid 0.366 0.770 0.294 0.00056
TAIR|locus:2130474 AT4G17070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 195/338 (57%), Positives = 240/338 (71%)

Query:     1 MGRRQTDSELSRLAVLIIFVLGCISFFMFYFCFSVGYKPSTSHVSLDSTLSFSGGGQXXX 60
             M RR  D E  R    ++ ++G IS  + Y  FS   +PS     +DS + F    +   
Sbjct:     1 MPRRLNDGEPGRFTATVLLLIGLISCVIVYAVFSSVLRPSQDPTLVDSAVRFKEEPRDHD 60

Query:    61 XXXXR---CCRGIEHLELWGDAVKWGANFKVNSSKECCMACKDTCEAEDRPCSCDSWVFC 117
                     CCRGI++LELWG AVKWG +FK NSS  CC ACK  C   D PC CDSWVFC
Sbjct:    61 ATEDGEGGCCRGIDNLELWGPAVKWGTDFKFNSSDGCCKACKVMCSGNDGPCLCDSWVFC 120

Query:   118 GDKQACGSRFGECWLKKQKDALEPNPRDARDQVMWTSGLIFGKGEGIVRLETEYGTLHVK 177
             G+K+ CGS+FGECWLKKQKD L P+ +   ++VMWTSGLIFG+G+GIV  ETE+G +HVK
Sbjct:   121 GNKEDCGSKFGECWLKKQKDVLVPDRQGGGEKVMWTSGLIFGQGQGIVGFETEHGVIHVK 180

Query:   178 LLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQG 237
             L P+ AP SV Y+L LL  RHC GCQFHRAE+RG++WD+EGNH++NAP  +GPP+A+IQG
Sbjct:   181 LHPECAPHSVYYILSLLTLRHCAGCQFHRAENRGSYWDSEGNHVKNAP--FGPPYAMIQG 238

Query:   238 SLETHSITFKEIPLEVCSTIRRGSVAWVGSGPEFFISLANHNEWKKVYTVFGIVLPEDMA 297
              L+     F  IP E C TI RGSVAWVGSGPEFFISLANH+EWK+ YTVFG+VLPEDM 
Sbjct:   239 ILQAEGNIFTPIPTEHCPTISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMD 298

Query:   298 IAERIARLPTKQEVWSNVNVSVLEKPIPLRFRRISTSQ 335
             + E IA LPT+ +VW++VNVSVLEKP+ L  RR+ T Q
Sbjct:   299 VVETIAGLPTRADVWNSVNVSVLEKPVSLTVRRMKTGQ 336
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IMP
TAIR|locus:2119191 AT4G33380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLV2 PPIL3 "Peptidyl-prolyl cis-trans isomerase-like 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291734 ppil3 "cyclophilin-type peptidylprolyl cis-trans isomerase (PPIase)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.1LOW CONFIDENCE prediction!
4th Layer5.2.1.8LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_40000088
hypothetical protein (339 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 2e-15
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 1e-08
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 1e-07
cd01925171 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC 6e-06
cd01928153 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 4e-05
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 2e-04
pfam1429548 pfam14295, PAN_4, PAN domain 2e-04
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information 
 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 32/157 (20%)

Query: 164 IVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIEN 223
            + + T  G + ++L  D AP +V   L L       G  FHR              I  
Sbjct: 1   FLDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRV-------------IPG 47

Query: 224 APGGYGPPFALIQGSLETHSIT--FKEIPLEVCSTIR--RGSVAWVGSGP-----EFFIS 274
                   F +IQG   T   T   + IP E  S ++  RG+++   SGP     +FFI+
Sbjct: 48  --------F-MIQGGDPTGPGTGGKRSIPDEFVSKLKHKRGTLSMARSGPNSAGSQFFIT 98

Query: 275 LANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEV 311
           L +       YTVFG V+ E M + E+I ++ T  + 
Sbjct: 99  LGDAPHLDGGYTVFGRVV-EGMDVVEKIEKVETDGDR 134

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>gnl|CDD|222657 pfam14295, PAN_4, PAN domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 100.0
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 100.0
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 100.0
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 100.0
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 100.0
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 100.0
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 100.0
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 99.98
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 99.97
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 99.97
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 99.97
KOG0883518 consensus Cyclophilin type, U box-containing pepti 99.97
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 99.97
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.97
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 99.97
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 99.97
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 99.97
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 99.96
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 99.96
PTZ00221249 cyclophilin; Provisional 99.96
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.96
PTZ00060183 cyclophilin; Provisional 99.96
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 99.96
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 99.95
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 99.94
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 99.92
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 99.71
PF1429551 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A. 98.23
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 96.64
PRK00969 508 hypothetical protein; Provisional 96.6
cd0110073 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d 96.11
COG4070 512 Predicted peptidyl-prolyl cis-trans isomerase (rot 94.47
smart0022379 APPLE APPLE domain. Four-fold repeat in plasma kal 93.94
PRK00969 508 hypothetical protein; Provisional 93.86
COG4070512 Predicted peptidyl-prolyl cis-trans isomerase (rot 93.65
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 92.93
PF12903147 DUF3830: Protein of unknown function (DUF3830); In 91.11
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 89.71
PF04126120 Cyclophil_like: Cyclophilin-like; InterPro: IPR007 86.24
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information 
Probab=100.00  E-value=2.1e-35  Score=258.88  Aligned_cols=143  Identities=26%  Similarity=0.396  Sum_probs=115.5

Q ss_pred             eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630          163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH  242 (338)
Q Consensus       163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~  242 (338)
                      |+|+|+|+.|+|+||||++.||++|+||++||+.+||+|+.|||++++             +.+|.|+|.....|+.+.+
T Consensus         1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~-------------f~iq~Gd~~~~g~g~~~~~   67 (153)
T cd01928           1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKG-------------FMVQTGDPTGTGKGGESIW   67 (153)
T ss_pred             CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCC-------------CEEEccccCCCCCCCCccC
Confidence            578999999999999999999999999999999999999999999655             4444444433334444555


Q ss_pred             CCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCccccceee
Q 019630          243 SITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVNV  317 (338)
Q Consensus       243 g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~~~~i~v  317 (338)
                      +..++++.....+|.++|+|+||++     +|||||++++.|+||++|+|||||+ +|||+|++|++++++.+.+|..+|
T Consensus        68 ~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~-~G~dvl~~I~~~~~~~~~~P~~~i  146 (153)
T cd01928          68 GKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVI-DGFETLDTLEKLPVDKKYRPLEEI  146 (153)
T ss_pred             CCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEE-eCHHHHHHHHcCCCCCCCCCcCCe
Confidence            5555544333455678999999985     4799999999999999999999999 999999999999998766665444


Q ss_pred             ee
Q 019630          318 SV  319 (338)
Q Consensus       318 ~v  319 (338)
                      +|
T Consensus       147 ~I  148 (153)
T cd01928         147 RI  148 (153)
T ss_pred             EE
Confidence            43

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00223 APPLE APPLE domain Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
2oju_A167 X-Ray Structure Of Complex Of Human Cyclophilin J W 5e-05
1xyh_A161 Crystal Structure Of Recombinant Human Cyclophilin 6e-05
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA 224
           V L T+ G + +++  +  P +    L L AS +  GC FHR        + +G  ++  
Sbjct: 9   VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHR--------NIKGFMVQT- 59
Query: 225 PGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGP-----EFFISLANHN 279
               G P    +G        F++   E      RG V+   +GP     +FFI+     
Sbjct: 60  ----GDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQP 115
Query: 280 EWKKVYTVFGIVLPEDMAIAERIARLPTKQEVWSNVN 316
                YTVFG V+ + +   + + +LP  ++ +  +N
Sbjct: 116 HLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYRPLN 151
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 1e-11
2hq6_A185 Serologically defined colon cancer antigen 10; pro 3e-11
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 3e-10
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 5e-10
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 1e-09
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 2e-09
2b71_A196 Cyclophilin-like protein; structural genomics, str 2e-09
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 5e-09
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 8e-09
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 9e-09
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 9e-09
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 1e-08
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 5e-08
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 6e-08
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 5e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 5e-05
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 Back     alignment and structure
 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 37/162 (22%)

Query: 160 KGEGIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGN 219
           +G G VRL T  G L+++L  D  P +    + L    +  G  FHR+            
Sbjct: 17  RGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRS------------ 64

Query: 220 HIENAPGGYGPPFALIQGSLET------HSITFKEIPLEVCSTIR---RGSVAWVGSGP- 269
            I N        F +IQG   T       S   K    E    +    RG ++   SGP 
Sbjct: 65  -IRN--------F-VIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPN 114

Query: 270 ----EFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPT 307
               +FFI+  +     K +T+FG V+     +   +  + +
Sbjct: 115 SNRSQFFITFRSCAYLDKKHTIFGRVV-GGFDVLTAMENVES 155
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 Back     alignment and structure
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 100.0
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 100.0
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 100.0
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 100.0
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 100.0
2b71_A196 Cyclophilin-like protein; structural genomics, str 100.0
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 100.0
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 100.0
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 100.0
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 100.0
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 100.0
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 100.0
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 100.0
2hq6_A185 Serologically defined colon cancer antigen 10; pro 100.0
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 100.0
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 100.0
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 100.0
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 100.0
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 100.0
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 100.0
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 100.0
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 100.0
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 100.0
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 100.0
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 100.0
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 100.0
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 100.0
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
1z81_A229 Cyclophilin; structural genomics, structural genom 100.0
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 100.0
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 100.0
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 99.97
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 99.97
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 99.95
2nnz_A153 Hypothetical protein; beta-barrel, structural geno 92.85
2f83_A 625 Coagulation factor XI; protease, apple domain, hyd 92.11
2yil_A138 Microneme antigen L2; sugar binding protein, apple 91.81
2yil_A138 Microneme antigen L2; sugar binding protein, apple 91.33
2f83_A 625 Coagulation factor XI; protease, apple domain, hyd 91.04
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 90.61
4a5v_A161 MIC4, micronemal protein 4; adhesion; NMR {Toxopla 90.13
3kop_A188 Uncharacterized protein; protein with A cyclophili 87.72
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
Probab=100.00  E-value=6.6e-37  Score=269.42  Aligned_cols=150  Identities=23%  Similarity=0.364  Sum_probs=122.6

Q ss_pred             eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630          163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH  242 (338)
Q Consensus       163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~  242 (338)
                      ++|+|+|+.|+|+|+||++.||+||+||++||+.|||+|+.||||+++             +++|.|+|.....|+.++|
T Consensus         1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~-------------f~iQgGd~~~~g~gg~si~   67 (161)
T 2ok3_A            1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKG-------------FMVQTGDPTGTGRGGNSIW   67 (161)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETT-------------TEEEECCTTSSSSCCCCTT
T ss_pred             CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECC-------------CEEecCCCCCCCCCCCccc
Confidence            579999999999999999999999999999999999999999999544             4445555544455666777


Q ss_pred             CCcCCCcCccccCCCCCceEeeeCCC-----CeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCc-ccccee
Q 019630          243 SITFKEIPLEVCSTIRRGSVAWVGSG-----PEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQE-VWSNVN  316 (338)
Q Consensus       243 g~~~~~i~~E~~~~~~rG~Vsma~sG-----sqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~-~~~~i~  316 (338)
                      +..++++....++|.++|+||||++|     |||||++++.++||++|+|||+|+ +||+||++|++++++.+ ..    
T Consensus        68 g~~~~dE~~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv-~G~dvv~~I~~~~~~~~~~~----  142 (161)
T 2ok3_A           68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKTYR----  142 (161)
T ss_dssp             SSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEE-ECHHHHHHHHTCCBCTTTCC----
T ss_pred             CCccccccCcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEe-CCHHHHHHHHhCCccCCCCC----
Confidence            77666543334567789999999954     899999999999999999999999 99999999999999864 32    


Q ss_pred             eeeeeCCeeEEEEEecC
Q 019630          317 VSVLEKPIPLRFRRIST  333 (338)
Q Consensus       317 v~vl~~pv~i~~~ri~~  333 (338)
                         +.+||.|+..+|..
T Consensus       143 ---P~~~v~I~~~~i~~  156 (161)
T 2ok3_A          143 ---PLNDVHIKDITIHA  156 (161)
T ss_dssp             ---BSSCCBEEEEEEEC
T ss_pred             ---cCCCeEEEEEEEec
Confidence               34566666655543
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} Back     alignment and structure
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Back     alignment and structure
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A* Back     alignment and structure
>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A* Back     alignment and structure
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii} Back     alignment and structure
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d1xwna1166 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome 2e-12
d1w74a_171 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 6e-12
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 9e-12
d2b71a1169 b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 2e-11
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 8e-11
d1v9ta_166 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 6e-09
d1lopa_164 b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 1e-08
d2c3ba1171 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper 1e-07
d2fu0a1155 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { 5e-07
d2a2na1164 b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma 7e-06
d1z81a1186 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas 1e-04
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 2e-12
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 19/148 (12%)

Query: 165 VRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENA 224
           V LET  G + ++L    AP +     EL    +  G +FHR                  
Sbjct: 14  VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG--------- 64

Query: 225 PGGYGPPFALIQGSLETHSITFKEIPLEVCSTIRRGSVAWVGSGPE-----FFISLANHN 279
               G P    +G    +   F++           G +A   +GP+     FF++LA   
Sbjct: 65  ----GDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQ 120

Query: 280 EWKKVYTVFGIVLPEDMAIAERIARLPT 307
                +T+FG V  + + +  R+  + T
Sbjct: 121 WLDGKHTIFGRVC-QGIGMVNRVGMVET 147
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 Back     information, alignment and structure
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 100.0
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 100.0
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 100.0
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 100.0
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 100.0
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 100.0
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 99.98
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.97
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 99.97
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 99.96
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.96
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 99.96
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 99.96
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 99.96
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.96
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 99.96
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 99.96
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 99.96
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 99.96
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.96
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 99.95
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 99.95
d1zx8a1124 Hypothetical protein TM1367 {Thermotoga maritima [ 86.33
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-35  Score=252.64  Aligned_cols=135  Identities=25%  Similarity=0.411  Sum_probs=113.0

Q ss_pred             eEEEEEEeeeeEEEEecCCCChHHHHHHHHHHhCCCCCCcEEEEeeeCCccccCCCCcccCCCCccCCCccccCCCcccC
Q 019630          163 GIVRLETEYGTLHVKLLPDSAPLSVAYMLELLASRHCVGCQFHRAESRGTHWDTEGNHIENAPGGYGPPFALIQGSLETH  242 (338)
Q Consensus       163 ~~V~l~T~~G~I~IeL~~d~AP~tv~nFl~L~~~g~YdG~~F~Rv~~~~q~GDp~g~~ik~~~~~~G~p~~liqGg~~~~  242 (338)
                      |+|+|+|+.|+|+|+||++.||++|+||++||+.+||+|+.|||++++             +.+|.|++.....++...+
T Consensus         1 msV~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~-------------~~iq~Gd~~~~~~~~~~~~   67 (159)
T d2ok3a1           1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKG-------------FMVQTGDPTGTGRGGNSIW   67 (159)
T ss_dssp             CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETT-------------TEEEECCTTSSSSCCCCTT
T ss_pred             CEEEEEeCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCC-------------eEEEeCCccccCCCCcccC
Confidence            579999999999999999999999999999999999999999999655             3344444433333444445


Q ss_pred             CCcCCCcCccccCCCCCceEeeeCC-----CCeEEEEcCCCCCCCCCceEEEEEEcccHHHHHHHhcCCCCCcc
Q 019630          243 SITFKEIPLEVCSTIRRGSVAWVGS-----GPEFFISLANHNEWKKVYTVFGIVLPEDMAIAERIARLPTKQEV  311 (338)
Q Consensus       243 g~~~~~i~~E~~~~~~rG~Vsma~s-----GsqFFItL~d~p~ldg~ytVFG~Vi~eGmdvLdkI~~~~t~~~~  311 (338)
                      +..+..+.++..+|.++|+|||+++     +|||||++++.|+||++|+|||+|+ +||++|++|++++++++.
T Consensus        68 ~~~~~~e~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~-~G~~vl~~I~~~~~~~~~  140 (159)
T d2ok3a1          68 GKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI-DGLETLDELEKLPVNEKT  140 (159)
T ss_dssp             SSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEE-ECHHHHHHHHTCCBCTTT
T ss_pred             CCccccccccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecc-cchHHHHHHHcCcCCCCC
Confidence            5555555566677889999999985     4899999999999999999999999 999999999999998754
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure