Citrus Sinensis ID: 019632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MDRVMANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
ccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccccccccEEEEcccccccccccHHHHccccccHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccEEEEEEEEEEEEcccccccEEEEccccccccccccccccccEEEEcccHHHHHHHHHHHHHcc
cccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccEEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccccccccccEEHHHHcccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccHHHHHHHHEEEEcccHEccccccccEEEEEEEcHHHHHHHHHccccEEEEEcccccEEEccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccHHcEcEEEEEEEEEccccccEEEEEccccccccccccccccccEEEEEccHHHHHHHHHHHHHcc
mdrvmanenshgsgvvlgsstnpakliidtdpgiddsMTILMAfqtpeleilGLTTIfgnvttedATRNALTLCemagcpgvpvaegspeplkggkprvaefahgsdgmgnisltppkakkcdknaSEFLVDKvseypgevsilalgpltNLALAIKRDSSFASKVKNIVVLGGAFfalgnvnpaaeaniygdpeaadvvFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFyrdwhvksdgvhgiflhdpvsfvalvrpdlftfkkGVVRVETQGICMGHTLMDqglkrwnvsnpwtgyspvsvAWTVNVDKVLNYIKRLLMKQ
mdrvmanenshgsgvvlgsstNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSpvsvawtvnvDKVLNYIKRLLMKQ
MDRVMANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
************************KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV*********************************************EFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLL***
*************************LIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK*
************SGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
********************TNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDRVMANENSHGSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q9SJM7336 Uridine nucleosidase 1 OS yes no 0.988 0.994 0.772 1e-150
Q6ZJ05324 Probable uridine nucleosi yes no 0.923 0.962 0.769 1e-143
Q652Q8337 Probable uridine nucleosi no no 0.923 0.925 0.722 1e-132
Q8LAC4322 Probable uridine nucleosi no no 0.928 0.975 0.507 2e-85
Q9P6J4310 Uncharacterized protein C yes no 0.860 0.938 0.372 7e-51
P83851314 Inosine-uridine preferrin yes no 0.807 0.869 0.351 2e-42
B5BCD9311 Pyrimidine-specific ribon yes no 0.801 0.871 0.352 8e-41
Q5PM78311 Pyrimidine-specific ribon yes no 0.801 0.871 0.352 8e-41
B4TB65311 Pyrimidine-specific ribon yes no 0.801 0.871 0.352 1e-40
Q8Z8H0311 Pyrimidine-specific ribon N/A no 0.801 0.871 0.352 1e-40
>sp|Q9SJM7|URH1_ARATH Uridine nucleosidase 1 OS=Arabidopsis thaliana GN=URH1 PE=1 SV=2 Back     alignment and function desciption
 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/338 (77%), Positives = 294/338 (86%), Gaps = 4/338 (1%)

Query: 1   MDRVMANENSHGS-GVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG 59
           MD  M N N   S G VLG      KLIIDTDPGIDDSM ILMAFQTPELEILGLTT+FG
Sbjct: 1   MDCGMENCNGGISNGDVLGKHE---KLIIDTDPGIDDSMAILMAFQTPELEILGLTTVFG 57

Query: 60  NVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKA 119
           NV+T+DATRNAL LCE+AG P VPVAEGS EPLKGG PRVA+F HG +G+G++SL PP  
Sbjct: 58  NVSTQDATRNALLLCEIAGFPDVPVAEGSSEPLKGGIPRVADFVHGKNGLGDVSLPPPSR 117

Query: 120 KKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 179
           KK +K+A+EFL +KV EYPGEV+ILALGPLTNLALAIKRDSSFASKVK IV+LGGAFF+L
Sbjct: 118 KKSEKSAAEFLDEKVEEYPGEVTILALGPLTNLALAIKRDSSFASKVKKIVILGGAFFSL 177

Query: 180 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLL 239
           GNVNPAAEANIYGDPEAADVVFTSGA+I VVGINITTQ+KL+D D LEL   KG++ +L+
Sbjct: 178 GNVNPAAEANIYGDPEAADVVFTSGADITVVGINITTQLKLSDDDLLELGNCKGKHSKLI 237

Query: 240 GDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQ 299
            DMCKFYRDWHVKSDGV+G++LHDPVSFVA+VRPDLFT+KKGVVRVETQGIC+GHTLMDQ
Sbjct: 238 SDMCKFYRDWHVKSDGVYGVYLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQ 297

Query: 300 GLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337
           GLKRWN SNPW GYSP+SVAWTV+V+ VL Y+K  LMK
Sbjct: 298 GLKRWNGSNPWVGYSPISVAWTVDVEGVLEYVKAKLMK 335
Involved in pyrimidine breakdown rather than in pyrimidine salvage. Unable to use cytidine as a substrate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: 3
>sp|Q6ZJ05|URH1_ORYSJ Probable uridine nucleosidase 1 OS=Oryza sativa subsp. japonica GN=URH1 PE=2 SV=1 Back     alignment and function description
>sp|Q652Q8|URH2_ORYSJ Probable uridine nucleosidase 2 OS=Oryza sativa subsp. japonica GN=URH2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LAC4|URH2_ARATH Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9P6J4|YHD6_SCHPO Uncharacterized protein C1683.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.06c PE=3 SV=1 Back     alignment and function description
>sp|P83851|IUNH_LEIMA Inosine-uridine preferring nucleoside hydrolase OS=Leishmania major GN=NSNH PE=1 SV=3 Back     alignment and function description
>sp|B5BCD9|RIHA_SALPK Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q5PM78|RIHA_SALPA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|B4TB65|RIHA_SALHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella heidelberg (strain SL476) GN=rihA PE=3 SV=1 Back     alignment and function description
>sp|Q8Z8H0|RIHA_SALTI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella typhi GN=rihA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
224090661351 predicted protein [Populus trichocarpa] 0.967 0.931 0.829 1e-160
359482324342 PREDICTED: uridine nucleosidase 1-like [ 0.955 0.944 0.839 1e-157
255575629330 inosine-uridine preferring nucleoside hy 0.946 0.969 0.809 1e-154
357510999334 Inosine-uridine preferring ribonucleosid 0.926 0.937 0.814 1e-151
297827113332 inosine-uridine preferring nucleoside hy 0.967 0.984 0.777 1e-150
18404099336 Uridine nucleosidase 1 [Arabidopsis thal 0.988 0.994 0.772 1e-148
363806952330 uncharacterized protein LOC100787563 [Gl 0.973 0.996 0.759 1e-147
449451126332 PREDICTED: uridine nucleosidase 1-like [ 0.979 0.996 0.771 1e-147
195629752325 pyrimidine-specific ribonucleoside hydro 0.943 0.981 0.761 1e-143
326514768324 predicted protein [Hordeum vulgare subsp 0.923 0.962 0.778 1e-142
>gi|224090661|ref|XP_002309047.1| predicted protein [Populus trichocarpa] gi|222855023|gb|EEE92570.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/329 (82%), Positives = 299/329 (90%), Gaps = 2/329 (0%)

Query: 11  HGS--GVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATR 68
           HG   GV+ GS+  P KLIIDTDPGIDD+M ILMAFQ+PELE+LGLTTIFGNV+TEDATR
Sbjct: 23  HGERDGVLAGSTAKPEKLIIDTDPGIDDTMAILMAFQSPELEVLGLTTIFGNVSTEDATR 82

Query: 69  NALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASE 128
           NAL LCE+AG P VPVAEGSPEPLKGG P V +F HGSDG+GN  L+PPKAKK  K+ASE
Sbjct: 83  NALLLCEIAGRPDVPVAEGSPEPLKGGIPTVPDFIHGSDGLGNTFLSPPKAKKIGKSASE 142

Query: 129 FLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEA 188
           FL+DKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVK IVVLGGAFFALGNVNPAAEA
Sbjct: 143 FLLDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKRIVVLGGAFFALGNVNPAAEA 202

Query: 189 NIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRD 248
           NI+GDPEAAD+VFTSGANI VVGINITTQVK TD D LELRQSKG+Y ++L DMCKFYRD
Sbjct: 203 NIHGDPEAADLVFTSGANIVVVGINITTQVKFTDGDLLELRQSKGKYAKILSDMCKFYRD 262

Query: 249 WHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSN 308
           WHVKSDGV+GIFLHDPVSFVALVRPDLFT+K GVVRVETQGIC GHTLMDQGLKRWN SN
Sbjct: 263 WHVKSDGVYGIFLHDPVSFVALVRPDLFTYKNGVVRVETQGICAGHTLMDQGLKRWNSSN 322

Query: 309 PWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337
           PW+G+SPV+VAWTV VD+VLNY+++LLMK
Sbjct: 323 PWSGFSPVAVAWTVTVDEVLNYVRQLLMK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482324|ref|XP_002283153.2| PREDICTED: uridine nucleosidase 1-like [Vitis vinifera] gi|297740083|emb|CBI30265.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255575629|ref|XP_002528714.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] gi|223531808|gb|EEF33626.1| inosine-uridine preferring nucleoside hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357510999|ref|XP_003625788.1| Inosine-uridine preferring ribonucleoside hydrolase [Medicago truncatula] gi|355500803|gb|AES82006.1| Inosine-uridine preferring ribonucleoside hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297827113|ref|XP_002881439.1| inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327278|gb|EFH57698.1| inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18404099|ref|NP_565843.1| Uridine nucleosidase 1 [Arabidopsis thaliana] gi|75206298|sp|Q9SJM7.2|URH1_ARATH RecName: Full=Uridine nucleosidase 1; AltName: Full=Uridine ribohydrolase 1 gi|15809830|gb|AAL06843.1| At2g36310/F2H17.8 [Arabidopsis thaliana] gi|17978871|gb|AAL47407.1| At2g36310/F2H17.8 [Arabidopsis thaliana] gi|20197937|gb|AAD21435.2| expressed protein [Arabidopsis thaliana] gi|21554564|gb|AAM63615.1| unknown [Arabidopsis thaliana] gi|330254137|gb|AEC09231.1| Uridine nucleosidase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|363806952|ref|NP_001242310.1| uncharacterized protein LOC100787563 [Glycine max] gi|255642155|gb|ACU21342.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449451126|ref|XP_004143313.1| PREDICTED: uridine nucleosidase 1-like [Cucumis sativus] gi|449482364|ref|XP_004156258.1| PREDICTED: uridine nucleosidase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|195629752|gb|ACG36517.1| pyrimidine-specific ribonucleoside hydrolase rihA [Zea mays] gi|380450563|gb|AFD54993.1| nucleoside N-ribohydrolase 2b [Zea mays subsp. mays] gi|414870116|tpg|DAA48673.1| TPA: putative inosine-uridine preferring nucleoside hydrolase [Zea mays] Back     alignment and taxonomy information
>gi|326514768|dbj|BAJ99745.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326526085|dbj|BAJ93219.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2049435336 URH1 "uridine-ribohydrolase 1" 0.988 0.994 0.769 8.3e-138
TAIR|locus:2032008322 URH2 "uridine-ribohydrolase 2" 0.926 0.972 0.509 4.2e-79
POMBASE|SPBC1683.06c310 SPBC1683.06c "uridine ribohydr 0.860 0.938 0.372 5.2e-49
TIGR_CMR|SPO_2470313 SPO_2470 "inosine-uridine pref 0.804 0.869 0.407 1.3e-45
UNIPROTKB|P22564304 rihC [Escherichia coli K-12 (t 0.784 0.871 0.375 3.7e-39
UNIPROTKB|P41409311 rihA [Escherichia coli K-12 (t 0.801 0.871 0.341 1.6e-38
UNIPROTKB|P33022313 rihB "ribonucleoside hydrolase 0.804 0.869 0.318 2.1e-38
TIGR_CMR|SO_0811318 SO_0811 "inosine-uridine prefe 0.804 0.855 0.333 8.9e-38
TIGR_CMR|BA_3606310 BA_3606 "inosine-uridine prefe 0.837 0.912 0.323 4e-35
TIGR_CMR|BA_5338316 BA_5338 "inosine-uridine prefe 0.795 0.851 0.320 7.4e-34
TAIR|locus:2049435 URH1 "uridine-ribohydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
 Identities = 260/338 (76%), Positives = 294/338 (86%)

Query:     1 MDRVMANENSH-GSGVVLGSSTNPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFG 59
             MD  M N N    +G VLG      KLIIDTDPGIDDSM ILMAFQTPELEILGLTT+FG
Sbjct:     1 MDCGMENCNGGISNGDVLGKHE---KLIIDTDPGIDDSMAILMAFQTPELEILGLTTVFG 57

Query:    60 NVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKA 119
             NV+T+DATRNAL LCE+AG P VPVAEGS EPLKGG PRVA+F HG +G+G++SL PP  
Sbjct:    58 NVSTQDATRNALLLCEIAGFPDVPVAEGSSEPLKGGIPRVADFVHGKNGLGDVSLPPPSR 117

Query:   120 KKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFAL 179
             KK +K+A+EFL +KV EYPGEV+ILALGPLTNLALAIKRDSSFASKVK IV+LGGAFF+L
Sbjct:   118 KKSEKSAAEFLDEKVEEYPGEVTILALGPLTNLALAIKRDSSFASKVKKIVILGGAFFSL 177

Query:   180 GNVNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLL 239
             GNVNPAAEANIYGDPEAADVVFTSGA+I VVGINITTQ+KL+D D LEL   KG++ +L+
Sbjct:   178 GNVNPAAEANIYGDPEAADVVFTSGADITVVGINITTQLKLSDDDLLELGNCKGKHSKLI 237

Query:   240 GDMCKFYRDWHVKSDGVHGIFLHDPVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQ 299
              DMCKFYRDWHVKSDGV+G++LHDPVSFVA+VRPDLFT+KKGVVRVETQGIC+GHTLMDQ
Sbjct:   238 SDMCKFYRDWHVKSDGVYGVYLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLMDQ 297

Query:   300 GLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK 337
             GLKRWN SNPW GYSP+SVAWTV+V+ VL Y+K  LMK
Sbjct:   298 GLKRWNGSNPWVGYSPISVAWTVDVEGVLEYVKAKLMK 335
GO:0005737 "cytoplasm" evidence=ISM
GO:0016787 "hydrolase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006218 "uridine catabolic process" evidence=IMP
GO:0045437 "uridine nucleosidase activity" evidence=IDA
GO:0047622 "adenosine nucleosidase activity" evidence=IDA
GO:0047724 "inosine nucleosidase activity" evidence=IDA
GO:0006152 "purine nucleoside catabolic process" evidence=IMP
GO:0072585 "xanthosine nucleotidase activity" evidence=IDA
TAIR|locus:2032008 URH2 "uridine-ribohydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC1683.06c SPBC1683.06c "uridine ribohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2470 SPO_2470 "inosine-uridine preferring nucleoside hydrolase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P22564 rihC [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P41409 rihA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P33022 rihB "ribonucleoside hydrolase 2 (pyrimidine-specific)" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0811 SO_0811 "inosine-uridine preferring nucleoside hydrolase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3606 BA_3606 "inosine-uridine preferring nucleoside hydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5338 BA_5338 "inosine-uridine preferring nucleoside hydrolase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B7L9J7RIHA_ECO553, ., 2, ., -, ., -0.34180.80170.8713yesno
A3D0C6RIHA_SHEB53, ., 2, ., -, ., -0.33570.80760.8584yesno
A4W829RIHA_ENT383, ., 2, ., -, ., -0.34540.80170.8658yesno
Q324P5RIHA_SHIBS3, ., 2, ., -, ., -0.34180.80170.8713yesno
Q8FJY8RIHA_ECOL63, ., 2, ., -, ., -0.34180.80170.8713yesno
B7MRT1RIHA_ECO813, ., 2, ., -, ., -0.34180.80170.8713yesno
C0PW90RIHA_SALPC3, ., 2, ., -, ., -0.34540.80170.8713yesno
B7UKT4RIHA_ECO273, ., 2, ., -, ., -0.34180.80170.8713yesno
B5FNA2RIHA_SALDC3, ., 2, ., -, ., -0.34540.80170.8713yesno
B7N9Q7RIHA_ECOLU3, ., 2, ., -, ., -0.34180.80170.8713yesno
B1LLA1RIHA_ECOSM3, ., 2, ., -, ., -0.34180.80170.8713yesno
Q0T6R1RIHA_SHIF83, ., 2, ., -, ., -0.34180.80170.8713yesno
Q9P6J4YHD6_SCHPONo assigned EC number0.37290.86090.9387yesno
B5YQK2RIHA_ECO5E3, ., 2, ., -, ., -0.34180.80170.8713yesno
P83851IUNH_LEIMA3, ., 2, ., 2, ., -0.35120.80760.8694yesno
Q652Q8URH2_ORYSJ3, ., 2, ., 2, ., 30.72200.92300.9258nono
A8AJF8RIHA_CITK83, ., 2, ., -, ., -0.34540.80170.8685yesno
Q3Z4E1RIHA_SHISS3, ., 2, ., -, ., -0.34180.80170.8713yesno
Q5PM78RIHA_SALPA3, ., 2, ., -, ., -0.35270.80170.8713yesno
Q6ZJ05URH1_ORYSJ3, ., 2, ., 2, ., 30.76920.92300.9629yesno
A7ZJ42RIHA_ECO243, ., 2, ., -, ., -0.34180.80170.8713yesno
Q0HZ05RIHA_SHESR3, ., 2, ., -, ., -0.34050.80470.8553yesno
B2TU69RIHA_SHIB33, ., 2, ., -, ., -0.34180.80170.8713yesno
A9MUJ0RIHA_SALPB3, ., 2, ., -, ., -0.35270.80170.8713yesno
Q0TK29RIHA_ECOL53, ., 2, ., -, ., -0.34180.80170.8713yesno
B5R809RIHA_SALG23, ., 2, ., -, ., -0.34900.80170.8713yesno
B5XWV7RIHA_KLEP33, ., 2, ., -, ., -0.34180.80170.8713yesno
A1A8R9RIHA_ECOK13, ., 2, ., -, ., -0.34180.80170.8713yesno
Q8ZQY4RIHA_SALTY3, ., 2, ., -, ., -0.34900.80170.8713yesno
B7NM03RIHA_ECO7I3, ., 2, ., -, ., -0.34180.80170.8713yesno
B5QVR2RIHA_SALEP3, ., 2, ., -, ., -0.34900.80170.8713yesno
B4TB65RIHA_SALHS3, ., 2, ., -, ., -0.35270.80170.8713yesno
Q57RR6RIHA_SALCH3, ., 2, ., -, ., -0.34180.80170.8713yesno
B7MFR7RIHA_ECO453, ., 2, ., -, ., -0.34180.80170.8713yesno
A6T9S2RIHA_KLEP73, ., 2, ., -, ., -0.34540.80170.8713yesno
B4TPY1RIHA_SALSV3, ., 2, ., -, ., -0.34540.80170.8713yesno
B5BCD9RIHA_SALPK3, ., 2, ., -, ., -0.35270.80170.8713yesno
A0L0Y0RIHA_SHESA3, ., 2, ., -, ., -0.34050.80470.8553yesno
Q83LY1RIHA_SHIFL3, ., 2, ., -, ., -0.34180.80170.8713yesno
Q9SJM7URH1_ARATH3, ., 2, ., 2, ., 30.77210.98810.9940yesno
B7M5H8RIHA_ECO8A3, ., 2, ., -, ., -0.34180.80170.8713yesno
B6I163RIHA_ECOSE3, ., 2, ., -, ., -0.34180.80170.8713yesno
B5EZA2RIHA_SALA43, ., 2, ., -, ., -0.34900.80170.8713yesno
Q0HEZ4RIHA_SHESM3, ., 2, ., -, ., -0.34050.80470.8553yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.30.979
3rd Layer3.2.20.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VI1752
inosine-uridine preferring nucleoside hydrolase family protein (EC-3.2.2.3 3.2.2.2) (351 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XI.3727.1
hypothetical protein (306 aa)
• •   • 0.739
gw1.VI.1832.1
annotation not avaliable (210 aa)
     •• 0.474
grail3.2618000201
Predicted protein (306 aa)
•       0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
PLN02717316 PLN02717, PLN02717, uridine nucleosidase 0.0
cd02650304 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subg 1e-156
COG1957311 COG1957, URH1, Inosine-uridine nucleoside N-ribohy 1e-106
pfam01156304 pfam01156, IU_nuc_hydro, Inosine-uridine preferrin 1e-102
cd02651302 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIU 6e-87
cd00455295 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolas 9e-82
cd02653320 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleosi 1e-63
cd02649306 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleos 3e-62
PRK10443311 PRK10443, rihA, ribonucleoside hydrolase 1; Provis 5e-55
PRK10768304 PRK10768, PRK10768, ribonucleoside hydrolase RihC; 6e-55
PRK09955313 PRK09955, rihB, ribonucleoside hydrolase 2; Provis 1e-49
cd02648367 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleosi 7e-37
cd02654318 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH 2e-35
cd02647312 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleo 9e-27
cd02652293 cd02652, nuc_hydro_2, NH_2: A subgroup of nucleosi 4e-12
PTZ00313326 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nu 6e-09
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase Back     alignment and domain information 
 Score =  593 bits (1531), Expect = 0.0
 Identities = 225/315 (71%), Positives = 259/315 (82%), Gaps = 1/315 (0%)

Query: 25  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
           KLIIDTDPGIDD+M ILMA ++PE+E++GLTTIFGNVTT+ ATRNAL L EMAG P VPV
Sbjct: 2   KLIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMAGRPDVPV 61

Query: 85  AEGSPEPLKGG-KPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSI 143
           AEGS EPLKGG KPR+A+F HGSDG+GN +L PPK KK +K+A+EFLV+KVSEYPGEV++
Sbjct: 62  AEGSHEPLKGGTKPRIADFVHGSDGLGNTNLPPPKGKKIEKSAAEFLVEKVSEYPGEVTV 121

Query: 144 LALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTS 203
           +ALGPLTNLALAIK D SFA KV  IVVLGGAFF  GNVNPAAEANI+GDPEAAD+VFTS
Sbjct: 122 VALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFVNGNVNPAAEANIFGDPEAADIVFTS 181

Query: 204 GANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHD 263
           GA+I VVGIN+TTQV LTDAD  ELR SKG+Y Q L D+CKFYRDWH KS G+ GI+LHD
Sbjct: 182 GADITVVGINVTTQVVLTDADLEELRDSKGKYAQFLCDICKFYRDWHRKSYGIDGIYLHD 241

Query: 264 PVSFVALVRPDLFTFKKGVVRVETQGICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVN 323
           P + +A VRP LFT+K+GVVRVET+GIC G TL D GLKRWN  N WTG  PV VA TV+
Sbjct: 242 PTALLAAVRPSLFTYKEGVVRVETEGICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVD 301

Query: 324 VDKVLNYIKRLLMKQ 338
              V+  +K  LM  
Sbjct: 302 APAVVELVKERLMAS 316

Length = 316
>gnl|CDD|239116 cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>gnl|CDD|224868 COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside hydrolase Back     alignment and domain information
>gnl|CDD|239117 cd02651, nuc_hydro_IU_UC_XIUA, nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|238257 cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239119 cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239115 cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>gnl|CDD|182465 PRK10443, rihA, ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>gnl|CDD|182166 PRK09955, rihB, ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>gnl|CDD|239114 cd02648, nuc_hydro_1, NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|239120 cd02654, nuc_hydro_CjNH, nuc_hydro_CjNH Back     alignment and domain information
>gnl|CDD|239113 cd02647, nuc_hydro_TvIAG, nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>gnl|CDD|239118 cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
COG1957311 URH1 Inosine-uridine nucleoside N-ribohydrolase [N 100.0
PLN02717316 uridine nucleosidase 100.0
PRK09955313 rihB ribonucleoside hydrolase 2; Provisional 100.0
cd02653320 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrola 100.0
PRK10443311 rihA ribonucleoside hydrolase 1; Provisional 100.0
cd02651302 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine 100.0
PRK10768304 ribonucleoside hydrolase RihC; Provisional 100.0
cd02649306 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrol 100.0
cd02650304 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nu 100.0
PTZ00313326 inosine-adenosine-guanosine-nucleoside hydrolase; 100.0
cd02654318 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolas 100.0
cd00455295 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleo 100.0
PF01156312 IU_nuc_hydro: Inosine-uridine preferring nucleosid 100.0
cd02647312 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydro 100.0
cd02648367 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrola 100.0
KOG2938350 consensus Predicted inosine-uridine preferring nuc 100.0
cd02652293 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrola 100.0
PF07632260 DUF1593: Protein of unknown function (DUF1593); In 98.23
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-86  Score=619.27  Aligned_cols=308  Identities=41%  Similarity=0.655  Sum_probs=294.1

Q ss_pred             CCceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccc
Q 019632           22 NPAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAE  101 (338)
Q Consensus        22 ~~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~  101 (338)
                      +++|||||||+|+||++||+||+++|++||+|||+|+||++++++++|++.+|+.+|+.+||||+|+.+||.++. ..++
T Consensus         1 ~~~kiiiD~DpG~DDaiAlllal~~p~i~l~giTtv~GNv~le~t~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-~~a~   79 (311)
T COG1957           1 MMRKIIIDCDPGHDDAIALLLALASPEIDLLGITTVAGNVPLEQTTRNALSVLELLGRADIPVYAGAARPLLREP-ITAP   79 (311)
T ss_pred             CCceEEEeCCCChhHHHHHHHHhcCCCceEEEEEEecCcccHhHHHHHHHHHHHHcCCCCCCeecCCCCCcCCCC-cchh
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999865 5678


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632          102 FAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN  181 (338)
Q Consensus       102 ~~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN  181 (338)
                      ++||++||++..+|.|...+...+|+++|+++++++|++|||+++|||||||+||+++|+++++||+||||||++..+||
T Consensus        80 ~iHG~~Gl~~~~lp~~~~~~~~~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~~GN  159 (311)
T COG1957          80 EIHGESGLGGPELPEPTRKLESKHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFVPGN  159 (311)
T ss_pred             hhcCCcCCCCCCCCcccccccCCcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCCCCC
Confidence            99999999999899888877789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632          182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL  261 (338)
Q Consensus       182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  261 (338)
                      +||.||||||+|||||++||+||+|++|+|||+|+|+..+++.++++++.+++.++++.+++++|..++.+.++..|.++
T Consensus       160 vtp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~g~~g~~~  239 (311)
T COG1957         160 VTPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAAGGPAAELVADLLDFYLAYYKSRQGLDGAPL  239 (311)
T ss_pred             cCcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHhCCccHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632          262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK  337 (338)
Q Consensus       262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~  337 (338)
                      ||++|++|+++|++|++++.+|+||+.| .++|+|++|+..       .+...+|++++.++|.++|++++.++|.+
T Consensus       240 hD~~a~a~l~~p~l~~~~~~~V~Ve~~~~lt~G~Tv~d~~~-------~~~~~~n~~v~~~vD~~~f~~~i~~~l~~  309 (311)
T COG1957         240 HDPLAVAYLLDPELFTTREANVDVETAGGLTRGMTVVDWRG-------VLGKPPNAQVAVDVDVEGFLDLILEALAR  309 (311)
T ss_pred             ccHHHHHHHhChhhhcceEEEEEEEeCCCCcCcceEEEecc-------cCCCCCCeEEeeccCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999998 899999999863       23467899999999999999999999875

>PLN02717 uridine nucleosidase Back     alignment and domain information
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional Back     alignment and domain information
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases Back     alignment and domain information
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional Back     alignment and domain information
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases Back     alignment and domain information
>PRK10768 ribonucleoside hydrolase RihC; Provisional Back     alignment and domain information
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans Back     alignment and domain information
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB) Back     alignment and domain information
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional Back     alignment and domain information
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH Back     alignment and domain information
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases Back     alignment and domain information
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3 Back     alignment and domain information
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax Back     alignment and domain information
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases Back     alignment and domain information
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases Back     alignment and domain information
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1ezr_A314 Crystal Structure Of Nucleoside Hydrolase From Leis 3e-42
3g5i_A312 Crystal Structure Of The E.Coli Riha Pyrimidine Nuc 4e-39
1yoe_A322 Crystal Structure Of A The E. Coli Pyrimidine Nucle 5e-39
3b9x_A333 Crystal Structure Of The E. Coli Pyrimidine Nucleos 6e-39
3mkm_A316 Crystal Structure Of The E. Coli Pyrimidine Nucleos 7e-39
1q8f_A313 Crystal Structure Of The E.Coli Pyrimidine Nucleosi 3e-38
1mas_A314 Purine Nucleoside Hydrolase Length = 314 2e-37
3t8j_A311 Structural Analysis Of Thermostable S. Solfataricus 4e-37
3t8i_A306 Structural Analysis Of Thermostable S. Solfataricus 6e-32
3fz0_A360 Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh) Leng 5e-16
2c40_A312 Crystal Structure Of Inosine-Uridine Preferring Nuc 7e-14
3epw_A338 Crystal Structure Of Trypanosoma Vivax Nucleoside H 5e-08
1hp0_A339 Crystal Structure Of An Inosine-Adenosine-Guanosine 5e-08
3b9g_A328 Crystal Structure Of Loop Deletion Mutant Of Trypan 6e-08
1r4f_A339 Inosine-Adenosine-Guanosine Preferring Nucleoside H 8e-08
1kic_A339 Inosine-adenosine-guanosine Preferring Nucleoside H 2e-07
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania Major Length = 314 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 159/279 (56%), Gaps = 6/279 (2%)
Query: 23  PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGV 82
           P K+I+D DPGIDD++ I +A   PE+E+L +TT+ GN + E  T+NA  + ++AG  GV
Sbjct: 2   PRKIILDCDPGIDDAVAIFLAHGNPEIELLAITTVVGNQSLEKVTQNARLVADVAGIVGV 61
Query: 83  PVAEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCD-KNASEFLVDKV-SEYPGE 140
           PVA G  +PL  G  R A   HG  GMGN+S  P    K D ++A + ++D + S  P  
Sbjct: 62  PVAAGCTKPLVRGV-RNASHIHGETGMGNVSYPPEFKTKLDGRHAVQLIIDLIMSHEPKT 120
Query: 141 VSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVV 200
           ++++  G LTN+A+A++ +     +VK +V++GG +   GN +P AE N++ DPEAA +V
Sbjct: 121 ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGGYHT-GNASPVAEFNVFIDPEAAHIV 179
Query: 201 FTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIF 260
           F    N+ +VG+++T     T A    +R+   +    +  +  FY   + K    +G  
Sbjct: 180 FNESWNVTMVGLDLTHLALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYG-K 238
Query: 261 LHDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMD 298
           +HDP +   ++ P + T ++  V +E  G +  G T+ D
Sbjct: 239 VHDPCAVAYVIDPTVMTTERVPVDIELNGALTTGMTVAD 277
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine Nucleosidase Bound To A Iminoribitol-Based Inhibitor Length = 312 Back     alignment and structure
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside Hydrolase Ybek With Bound Ribose Length = 322 Back     alignment and structure
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik In Complex With Inosine Length = 333 Back     alignment and structure
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside Hydrolase Yeik (Apo-Form) Length = 316 Back     alignment and structure
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside Hydrolase Yeik Length = 313 Back     alignment and structure
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase Length = 314 Back     alignment and structure
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Pyrimidine- Specific Nucleoside Hydrolase Length = 311 Back     alignment and structure
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus Purine-Specific Nucleoside Hydrolase Length = 306 Back     alignment and structure
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh) Length = 360 Back     alignment and structure
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside Hydrolase From Bacillus Anthracis At 2.2a Resolution Length = 312 Back     alignment and structure
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside Hydrolase In Complex With The Inhibitor (2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2- D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3, 4-Diol Length = 338 Back     alignment and structure
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine- Preferring Nucleoside Hydrolase From Trypanosoma Vivax In Complex With The Substrate Analogue 3-Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh Length = 328 Back     alignment and structure
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In Complex With 3- Deaza-Adenosine Length = 339 Back     alignment and structure
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In Complex With Inosine Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 1e-135
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 1e-130
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 1e-127
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 1e-126
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 1e-124
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 1e-121
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 1e-109
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 1e-104
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Length = 311 Back     alignment and structure
 Score =  385 bits (991), Expect = e-135
 Identities = 90/313 (28%), Positives = 161/313 (51%), Gaps = 9/313 (2%)

Query: 25  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
             IID D   DD +++ +  +   ++++ +T + GN++ E   +NAL   E      +PV
Sbjct: 3   HFIIDCDTAEDDVLSLYLLLK-NNIDVVAVTIVEGNISYEQEVKNALWALEQVN-REIPV 60

Query: 85  AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSIL 144
             G+ +PL        E  HG  G+G++++ P + K  +K+A+  ++D  +EY GE+  L
Sbjct: 61  YPGANKPLLK-NYITVEKVHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFL 119

Query: 145 ALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFTSG 204
           A+ PLTNLALA   D+S   K+K + V+GGA F +GN+ P AE NI+ DP+AA +VF +G
Sbjct: 120 AISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNITPVAEFNIWVDPDAAKIVFNAG 179

Query: 205 ANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLHDP 264
            +I ++  ++     +TD ++  ++  K R  +L   M   YR +      ++G    D 
Sbjct: 180 FDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHPDA 239

Query: 265 VSFVALVRPDLFTFKKGV-VRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTV 322
           ++    +   + T ++   V ++    I  G TL+D    R++    W+      + + +
Sbjct: 240 ITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVD----RFDADTSWSDKPNAEIVYEI 295

Query: 323 NVDKVLNYIKRLL 335
           N    +  I  LL
Sbjct: 296 NKKSFMEKIYDLL 308
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Length = 314 Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Length = 322 Back     alignment and structure
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Length = 313 Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Length = 306 Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Length = 312 Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Length = 338 Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
3t8j_A311 Purine nucleosidase, (IUNH-1); nucleoside hydrolas 100.0
1q8f_A313 Pyrimidine nucleoside hydrolase; open alpha-beta s 100.0
1yoe_A322 Hypothetical protein YBEK; pyrimidine nucleoside h 100.0
2mas_A314 Inosine-uridine nucleoside N-ribohydrolase; purine 100.0
3t8i_A306 Purine nucleosidase, (IUNH-2); purine nucleoside h 100.0
3fz0_A360 Nucleoside hydrolase, putative; NH fold, open alph 100.0
2c40_A312 Inosine-uridine preferring nucleoside hydrolase F 100.0
3epw_A338 IAG-nucleoside hydrolase; rossmann fold, active si 100.0
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 99.29
>3t8j_A Purine nucleosidase, (IUNH-1); nucleoside hydrolase, thermostable protein, open (alpha,beta structure, rossmann fold, NH-fold; 1.60A {Sulfolobus solfataricus} Back     alignment and structure
Probab=100.00  E-value=9e-83  Score=603.06  Aligned_cols=308  Identities=29%  Similarity=0.494  Sum_probs=286.7

Q ss_pred             CceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCcccc
Q 019632           23 PAKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEF  102 (338)
Q Consensus        23 ~~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~  102 (338)
                      ++|||||||+|+||++||+|| .+|+++|+|||+|+||++++++++|++++|+++|+ +||||+|+.+||.++. ..+++
T Consensus         1 M~kvIiDtD~G~DDa~Al~~a-~~p~iel~gIttv~GN~~~~~~~~Na~~ll~~~g~-diPV~~Ga~~Pl~~~~-~~a~~   77 (311)
T 3t8j_A            1 MRHFIIDCDTAEDDVLSLYLL-LKNNIDVVAVTIVEGNISYEQEVKNALWALEQVNR-EIPVYPGANKPLLKNY-ITVEK   77 (311)
T ss_dssp             CCEEEEEECCSHHHHHHHHHH-HHTTCEEEEEEECSSSSCHHHHHHHHHHHHHHTTC-CCCEEECCSSCSSSCC-CCCHH
T ss_pred             CceEEEECCCChHHHHHHHHH-cCCCCEEEEEEEccCCCCHHHHHHHHHHHHHHcCC-CCCEEECCCCCCCCCC-ccchh
Confidence            479999999999999999999 77999999999999999999999999999999999 9999999999998864 56788


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHcCCCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCCC
Q 019632          103 AHGSDGMGNISLTPPKAKKCDKNASEFLVDKVSEYPGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNV  182 (338)
Q Consensus       103 ~hg~dGlg~~~~p~~~~~~~~~~a~~~i~~~~~~~p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN~  182 (338)
                      +||++|||+..+|.+...+...+|+++|+++++++|++||||++|||||||+||+++|++.++||+||+|||++..+||+
T Consensus        78 ~hG~~Glg~~~~p~~~~~~~~~~A~~~i~~~~~~~~~~vtiva~GpLTNlA~al~~~P~i~~~i~~iviMGG~~~~~GN~  157 (311)
T 3t8j_A           78 VHGKGGIGDVTVEPKRLKAQEKHAALAIIDLANEYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGAVFGIGNI  157 (311)
T ss_dssp             HHCTTSSSSCCCCCSSCCCCSSCHHHHHHHHHHHTTTTEEEEECSCSHHHHHHHHHCTTHHHHEEEEEEECCCTTSCCSS
T ss_pred             hcCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHChHHHhhcCEEEEcCCcccCCCCC
Confidence            99999999999998877778899999999999999999999999999999999999999999999999999999889999


Q ss_pred             CccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCcccccc
Q 019632          183 NPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH  262 (338)
Q Consensus       183 ~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  262 (338)
                      +|.||||||+|||||++||+|++|++|+|||+|++..+++++++++++.+++.++|+.+++++|..++.+.++..++++|
T Consensus       158 tp~aEfN~~~DPeAA~~V~~sg~~i~~v~ldvt~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~lh  237 (311)
T 3t8j_A          158 TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTDEEWNVIKNMKTRMSELYVSMYLHYRQYSSTVQKINGHPHP  237 (311)
T ss_dssp             SSSCCHHHHHCHHHHHHHHHTTCCEEEECHHHHTTSCBCHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHTSCCSSBCCH
T ss_pred             CchhhhccccCHHHHHHHHhCCCCEEEecccccccccCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcCCCCCcCc
Confidence            99999999999999999999999999999999988889999999999988999999999999999887777777899999


Q ss_pred             ccchhhhhccCCeee-eEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632          263 DPVSFVALVRPDLFT-FKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK  337 (338)
Q Consensus       263 D~la~a~~~~P~l~~-~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~  337 (338)
                      |++|++++++|++|+ +++.+|+||++| .+||+|++|+.+..    ..++..+|++|+.++|.++|+++|.++|.+
T Consensus       238 D~lava~~l~P~l~~~~~~~~v~Ve~~g~~t~G~tv~d~~~~~----~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~  310 (311)
T 3t8j_A          238 DAITTAIAIDGSIATRREKRFVVIDNTDNITRGMTLVDRFDAD----TSWSDKPNAEIVYEINKKSFMEKIYDLLNW  310 (311)
T ss_dssp             HHHHHHHHHCGGGEEEEEEEEEEECCSSSTTTTCEEEECSCSS----SCSCSSCCEEEEEEECHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhCHHHhhccceeeEEEecCCCCCCceEEEecCCCc----ccCCCCCCEEEeeccCHHHHHHHHHHHHhh
Confidence            999999999999996 689999999997 79999999975320    113456899999999999999999999875
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A* Back     alignment and structure
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A* Back     alignment and structure
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A Back     alignment and structure
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus} Back     alignment and structure
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei} Back     alignment and structure
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis} Back     alignment and structure
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A* Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d2masa_313 c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohyd 7e-80
d1kica_327 c.70.1.1 (A:) Inosine-adenosine-guanosine preferri 3e-79
d1q8fa_308 c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK 9e-79
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Length = 313 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-uridine nucleoside N-ribohydrolase, IU-NH
species: Crithidia fasciculata [TaxId: 5656]

 Score =  244 bits (623), Expect = 7e-80
 Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 12/314 (3%)

Query: 25  KLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPV 84
           K+I+D DPG+DD++ IL+A   PE+E+L +TT+ GN T    TRNA  + ++AG  GVP+
Sbjct: 3   KIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPI 62

Query: 85  AEGSPEPLKGGKPRVAEFAHGSDGMGNISLTPPKAKKCDKNAS--EFLVDKVSEYPGEVS 142
           A G  +PL   K   A   HG  GMG ++       K D+  +    +   +S  P  ++
Sbjct: 63  AAGCDKPLV-RKIMTAGHIHGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTIT 121

Query: 143 ILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGNVNPAAEANIYGDPEAADVVFT 202
           ++  G LTN+A+A + +     +VK +V++GG +   GN    AE NI  DPEAA +VF 
Sbjct: 122 LVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHE-GNATSVAEFNIIIDPEAAHIVFN 180

Query: 203 SGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFLH 262
               + +VG+++T Q   T      +++      + + ++  +Y   +  +  +    +H
Sbjct: 181 ESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVH 240

Query: 263 DPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWT 321
           DP +   ++ P + T ++  V +E  G + +G T+ D         NP   +    VA  
Sbjct: 241 DPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADF-------RNPRPEHCHTQVAVK 293

Query: 322 VNVDKVLNYIKRLL 335
           ++ +K    +   L
Sbjct: 294 LDFEKFWGLVLDAL 307
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Length = 327 Back     information, alignment and structure
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Length = 308 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d2masa_313 Inosine-uridine nucleoside N-ribohydrolase, IU-NH 100.0
d1q8fa_308 Pyrimidine nucleoside hydrolase YeiK {Escherichia 100.0
d1kica_327 Inosine-adenosine-guanosine preferring nucleoside 100.0
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleoside hydrolase
superfamily: Nucleoside hydrolase
family: Nucleoside hydrolase
domain: Inosine-uridine nucleoside N-ribohydrolase, IU-NH
species: Crithidia fasciculata [TaxId: 5656]

Probab=100.00  E-value=1.9e-79  Score=580.20  Aligned_cols=305  Identities=29%  Similarity=0.502  Sum_probs=284.1

Q ss_pred             ceEEEecCCCchHHHHHHHHHcCCCCeEEEEEeecCCCChHHHHHHHHHHHHHhCCCCCCcccCCCCCCCCCCCCccccc
Q 019632           24 AKLIIDTDPGIDDSMTILMAFQTPELEILGLTTIFGNVTTEDATRNALTLCEMAGCPGVPVAEGSPEPLKGGKPRVAEFA  103 (338)
Q Consensus        24 ~~vIiDtD~G~DD~~AL~~al~~~~v~v~gIt~v~Gn~~~~~~~~na~~ll~~~g~~dIPV~~Ga~~pl~~~~~~~~~~~  103 (338)
                      ||||||||+|+||++||+|||++|++||+|||+|+||++++++++|++++|+++|+++||||.|+..|+.+.. ..+.++
T Consensus         2 kkvIiDtD~G~DDa~Al~~al~~p~vel~gIt~v~GN~~~~~~~~n~~~ll~~~g~~~iPV~~G~~~~~~~~~-~~~~~~   80 (313)
T d2masa_           2 KKIILDCDPGLDDAVAILLAHGNPEIELLAITTVVGNQTLAKVTRNAQLVADIAGITGVPIAAGCDKPLVRKI-MTAGHI   80 (313)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHTTCCSCCEEECCSSCSSSCC-CCCHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCcEEEEEEEccCCcCHHHHHHHHHHHHHHhCCCCCcEEecCCCcccccc-cchhhc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998754 467789


Q ss_pred             cCCCCCCCCCCCCCCCC-CCCccHHHHHHHHHHcC-CCcEEEEEecchhHHHHHHhhCcchhhccceEEEecCCCCCCCC
Q 019632          104 HGSDGMGNISLTPPKAK-KCDKNASEFLVDKVSEY-PGEVSILALGPLTNLALAIKRDSSFASKVKNIVVLGGAFFALGN  181 (338)
Q Consensus       104 hg~dGlg~~~~p~~~~~-~~~~~a~~~i~~~~~~~-p~~vtila~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~~GN  181 (338)
                      ||.+|+|+..+|.+... ..+.+|++++++.++++ |++||||++|||||||+||+++|++.++||+||+|||++. +||
T Consensus        81 ~g~~g~g~~~~p~~~~~~~~~~~a~~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~-~GN  159 (313)
T d2masa_          81 HGESGMGTVAYPAEFKNKVDERHAVNLIIDLVMSHEPKTITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYH-EGN  159 (313)
T ss_dssp             HCSSSSTTCCCCSSCSSCBCSSCHHHHHHHHHHHSCTTCEEEEECSCSHHHHHHHHHCTHHHHHSCEEEEECCCSS-CCS
T ss_pred             cccCCCCCccCCccccccccchhhhHHHHHHHhhcCCCcEEEEEcCCchHHHHHHHhhhhhhhhcCeEEEeccCCC-CCC
Confidence            99999999988776543 45788999999988765 8999999999999999999999999999999999999996 799


Q ss_pred             CCccccccccCCHHHHHHHHhcCCcEEEEecccccccccCHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcCCCccccc
Q 019632          182 VNPAAEANIYGDPEAADVVFTSGANIAVVGINITTQVKLTDADFLELRQSKGRYVQLLGDMCKFYRDWHVKSDGVHGIFL  261 (338)
Q Consensus       182 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  261 (338)
                      ++|.||||||+|||||++||+|++|++++|||+|+++.+++++++++.+.+++.++|+.+++++|.+++.+.++..++++
T Consensus       160 ~~~~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  239 (313)
T d2masa_         160 ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAV  239 (313)
T ss_dssp             SSSSCCHHHHTCHHHHHHHHHSSSCEEEECHHHHTTCEECHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHSTTCCSSEEC
T ss_pred             CccccccceeeChHHHHHHhccCCCeEEecchhhhcccCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCcCCCcc
Confidence            99999999999999999999999999999999999999999999999998999999999999999998877777788999


Q ss_pred             cccchhhhhccCCeeeeEEeeEEEEecC-CcceeEEEecCCcccccCCCCCCCCCcEEEeecCHHHHHHHHHHHHhc
Q 019632          262 HDPVSFVALVRPDLFTFKKGVVRVETQG-ICMGHTLMDQGLKRWNVSNPWTGYSPVSVAWTVNVDKVLNYIKRLLMK  337 (338)
Q Consensus       262 ~D~la~a~~~~P~l~~~~~~~v~V~~~g-~~~G~tv~d~~~~~~~~~~~~~~~~~v~v~~~vD~~~f~~~l~~~l~~  337 (338)
                      ||++|++++++|++|++++.+|+|+++| .+||+|++|+...       ++..+|++|+.++|.++|+++|+++|.+
T Consensus       240 ~D~lA~a~~idP~l~~~~~~~v~Vet~g~~trG~tv~d~~~~-------~~~~~n~~V~~~vD~~~F~~~l~~~L~r  309 (313)
T d2masa_         240 HDPCAVAYVIDPSVMTTERVPVDIELTGKLTLGMTVADFRNP-------RPEHCHTQVAVKLDFEKFWGLVLDALER  309 (313)
T ss_dssp             CHHHHHHHHHCGGGEEEEECCEEECSSCSSCTTCEEECCCSS-------CCSSCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred             CcHHHhHHhcCcceeEEEEEeEEEEeCCCCCCCeEEEecccC-------CCCCCCeEEEeeCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998 7999999997532       2356899999999999999999999976
>d1q8fa_ c.70.1.1 (A:) Pyrimidine nucleoside hydrolase YeiK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]} Back     information, alignment and structure