Citrus Sinensis ID: 019636


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV
ccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccc
ccccHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHEHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHccccccccccccEEEcccc
MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKmerhftpagsarfNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVytgkdvsfKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKsyhhenidkselsdHLEVYLgeyvplkskdiqlehyev
MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMErhftpagsarfnkLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVytgkdvsfkkVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEyvplkskdiqlehyev
MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFylvlsllstsavvytvACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICllllfklmlfalVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV
********QFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLK***********
******E*QFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERH******ARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKD********
MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV
**REQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERH*TPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHY**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKVVHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACVYTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
255558454332 conserved hypothetical protein [Ricinus 0.982 1.0 0.624 1e-108
224085053331 predicted protein [Populus trichocarpa] 0.979 1.0 0.597 1e-107
225457835332 PREDICTED: uncharacterized protein LOC10 0.982 1.0 0.597 1e-102
225431629332 PREDICTED: uncharacterized protein LOC10 0.976 0.993 0.605 3e-99
224093419334 predicted protein [Populus trichocarpa] 0.982 0.994 0.562 4e-99
356515963333 PREDICTED: uncharacterized protein LOC10 0.982 0.996 0.530 2e-97
224093413334 predicted protein [Populus trichocarpa] 0.985 0.997 0.551 1e-93
388499710333 unknown [Medicago truncatula] 0.982 0.996 0.528 2e-93
359806934332 uncharacterized protein LOC100819866 [Gl 0.982 1.0 0.538 1e-92
224077230339 predicted protein [Populus trichocarpa] 0.991 0.988 0.574 1e-89
>gi|255558454|ref|XP_002520252.1| conserved hypothetical protein [Ricinus communis] gi|223540471|gb|EEF42038.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/338 (62%), Positives = 256/338 (75%), Gaps = 6/338 (1%)

Query: 1   MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKV 60
           MDREQEEMQFLG+F I++E+ K++ TWR+IFS+ITLALILPLSFIFLAH++++DL+   +
Sbjct: 1   MDREQEEMQFLGLFDIFKESYKIVFTWRKIFSQITLALILPLSFIFLAHIQISDLISADI 60

Query: 61  VHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFYLVLSLLSTSAVVYTVACV 120
             D+ +   T AGSAR  KL D+I  + T    FK AY TF+L+ SLLST+AVVYT+AC+
Sbjct: 61  NRDEDQLDQTQAGSARNKKLNDLIFSELTYLMLFKFAYFTFFLIFSLLSTAAVVYTIACI 120

Query: 121 YTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDI 180
           YT +DVSFKKVMSVVPKVWKRLMVTFLC F A F YN  A  +   W +L    T+ G +
Sbjct: 121 YTARDVSFKKVMSVVPKVWKRLMVTFLCIFGAIFAYNIVAGFLFITWFILLSD-TSVGVV 179

Query: 181 KFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVI 240
            F+       LV Y  G  YL +IW LASVVSVLEE+CG  AMIKS+ LI+GK+ + A+I
Sbjct: 180 SFL-----AFLVLYFVGVVYLGIIWQLASVVSVLEEACGVKAMIKSRQLIRGKIWIAAII 234

Query: 241 LFIMNISLFAVQLIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCK 300
            F +N+SLF +Q +F RLVVHG  L   +RV +G+IC LLLFKL LF LVI TVIYFVCK
Sbjct: 235 NFTLNLSLFIIQAVFERLVVHGRSLNMVNRVSYGIICFLLLFKLFLFGLVIHTVIYFVCK 294

Query: 301 SYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV 338
           SYHHENIDKS LSDHLEVYLGEYVPLKSKD+QLE +EV
Sbjct: 295 SYHHENIDKSALSDHLEVYLGEYVPLKSKDVQLEQFEV 332




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085053|ref|XP_002307472.1| predicted protein [Populus trichocarpa] gi|222856921|gb|EEE94468.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225457835|ref|XP_002267135.1| PREDICTED: uncharacterized protein LOC100243726 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431629|ref|XP_002262838.1| PREDICTED: uncharacterized protein LOC100255146 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224093419|ref|XP_002309917.1| predicted protein [Populus trichocarpa] gi|222852820|gb|EEE90367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515963|ref|XP_003526666.1| PREDICTED: uncharacterized protein LOC100798371 [Glycine max] Back     alignment and taxonomy information
>gi|224093413|ref|XP_002309916.1| predicted protein [Populus trichocarpa] gi|222852819|gb|EEE90366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499710|gb|AFK37921.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359806934|ref|NP_001241069.1| uncharacterized protein LOC100819866 [Glycine max] gi|255635996|gb|ACU18343.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224077230|ref|XP_002335803.1| predicted protein [Populus trichocarpa] gi|222834925|gb|EEE73374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2029529321 AT1G31130 "AT1G31130" [Arabido 0.946 0.996 0.362 4.8e-46
TAIR|locus:2155307321 AT5G44860 "AT5G44860" [Arabido 0.943 0.993 0.361 5.7e-43
TAIR|locus:2119807321 AT4G19950 "AT4G19950" [Arabido 0.739 0.778 0.371 2.1e-38
TAIR|locus:2054016322 AT2G18690 "AT2G18690" [Arabido 0.849 0.891 0.231 1.2e-10
TAIR|locus:2007096350 AT1G69430 "AT1G69430" [Arabido 0.863 0.834 0.251 1.5e-10
TAIR|locus:2200590335 AT1G26650 "AT1G26650" [Arabido 0.576 0.582 0.233 2.5e-07
TAIR|locus:2054005287 AT2G18680 "AT2G18680" [Arabido 0.514 0.606 0.267 3.8e-07
TAIR|locus:2029529 AT1G31130 "AT1G31130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 123/339 (36%), Positives = 176/339 (51%)

Query:     1 MDREQEEMQFLGIFGIYREACKVIITWRRIFSKITLALILPLSFIFLAHVELTDLLHRKV 60
             MD + EE+QFL I  + +E+  +     R F  ITL+ I PLSF  LAH   T  +  K+
Sbjct:     1 MDLQPEELQFLTIPQLLQESISIKKRSPRTFYLITLSFIFPLSFAILAHSLFTQPILAKL 60

Query:    61 VHDKMERHFTPAGSARFNKLTDVISEDRTLYWFFKVAYLTFXXXXXXXXXXXXXXXXACV 120
               DK +    P  S R          D T+   F+ +YL F                A +
Sbjct:    61 --DKSD----PPNSDRSR-------HDWTVLLIFQFSYLIFLFAFSLLSTAAVVFTVASL 107

Query:   121 YTGKDVSFKKVMSVVPKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWVVLWGILTAGGDI 180
             YTGK VSF   +S +PKV+KRL +TFL   L  F YN    V + + +V   + + G  +
Sbjct:   108 YTGKPVSFSSTLSAIPKVFKRLFITFLWVALLMFAYNAVFFVFLVMLLVALDLNSLG--L 165

Query:   181 KFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLEESCGFAAMIKSQALIKGKMLVTAVI 240
               +  ++  +L F V  H Y + +WHL SV+SVLE   G AAM K+  L+KGK  +   +
Sbjct:   166 AIVAGVIISVLYFGV--HVYFTALWHLGSVISVLEPVYGIAAMRKAYELLKGKTKMAMGL 223

Query:   241 LFIMNISLFAVQLIFWRLVVHGWW-LGTGSRVLFGVICXXXXXXXXXXXXVIQTVIYFVC 299
             +F+       + ++F  +VVHG    GT +R L G +             ++Q+V Y+VC
Sbjct:   224 IFVYLFLCGLIGVVFGAVVVHGGGKYGTFTRTLVGGLLVGVLVMVNLVGLLVQSVFYYVC 283

Query:   300 KSYHHENIDKSELSDHLEVYLGEYVPLKSKDIQLEHYEV 338
             KSYHH+ IDK+ L D L  YLG+YVPLKS +IQLE  ++
Sbjct:   284 KSYHHQTIDKTALYDQLGGYLGDYVPLKS-NIQLEDLDI 321




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2155307 AT5G44860 "AT5G44860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119807 AT4G19950 "AT4G19950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054016 AT2G18690 "AT2G18690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007096 AT1G69430 "AT1G69430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200590 AT1G26650 "AT1G26650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054005 AT2G18680 "AT2G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_Genewise1_v1.C_LG_V0127
hypothetical protein (332 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
PF06161243 DUF975: Protein of unknown function (DUF975); Inte 99.13
PF10110149 GPDPase_memb: Membrane domain of glycerophosphoryl 99.02
PF06790248 UPF0259: Uncharacterised protein family (UPF0259); 98.94
PRK02868245 hypothetical protein; Provisional 98.81
COG4781340 Membrane domain of membrane-anchored glycerophosph 95.67
PF10110149 GPDPase_memb: Membrane domain of glycerophosphoryl 80.37
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins Back     alignment and domain information
Probab=99.13  E-value=1.8e-07  Score=85.81  Aligned_cols=178  Identities=17%  Similarity=0.230  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CCCchhHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-Hhc
Q 019636          102 YLVLSLLSTSAVVYTVACVYTG-KDVSFKKVMSVV--PKVWKRLMVTFLCTFLAYFLYNFAAIVVVSLWV----VL-WGI  173 (338)
Q Consensus       102 ~~~~sll~~~aiv~ava~~~~g-k~~sl~~~~~~~--~~~~~~ll~T~~~~~~l~l~~~~~~~~~l~~~~----~~-~~~  173 (338)
                      .++.+++..+. .+..-..+.| ++.++++.....  ++.+| .+.+.+...+..+....+.++......    .. .+.
T Consensus        57 ~lv~~~l~~G~-~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k-~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~  134 (243)
T PF06161_consen   57 SLVSGPLSAGY-SFFYLDIVRGKEEPSFSDLFYGFKKKRFGK-SFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGS  134 (243)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhCCCCCCHHHHHHHHccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33344444444 4455577777 899999998766  44444 455555555555544444322211111    00 111


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeec-ccchhhHHHhhHHHhcCChHHHHHHHHHHHHHHHHHH
Q 019636          174 LTAGGDIKFMLSILYVILVFYVAGHFYLSVIWHLASVVSVLE-ESCGFAAMIKSQALIKGKMLVTAVILFIMNISLFAVQ  252 (338)
Q Consensus       174 ~~~~~~~~~~l~~~~l~~i~~~~~~~yl~v~~~la~vvsVlE-~~~G~~AL~rS~~L~kG~~~~~l~l~ll~~l~~~~i~  252 (338)
                      ..........+.......+...+...+....+.++.-+-.-+ |.+..+|+++|+++|||++|+.+.+.+-+..+     
T Consensus       135 ~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfigw-----  209 (243)
T PF06161_consen  135 MNSRSSIISLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFIGW-----  209 (243)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence            111101111112222233334445566666666666654333 56899999999999999999998877644222     


Q ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 019636          253 LIFWRLVVHGWWLGTGSRVLFGVICLLLLFKLMLFALVIQTVIYFVCKSYH  303 (338)
Q Consensus       253 ~~~~~~v~~~~~~g~~~~v~~g~v~~~l~~~v~l~~~vv~tV~Y~~CK~~~  303 (338)
                       .+            .+-+..|+    ..-.+.++..++++.||.|+|+++
T Consensus       210 -~~------------L~~~t~gi----~~l~~~pY~~~~~a~fY~~l~~~~  243 (243)
T PF06161_consen  210 -YI------------LGLLTFGI----GLLWVIPYINTAQAEFYEELRKRK  243 (243)
T ss_pred             -HH------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence             11            00111122    224456999999999999999864



>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [] Back     alignment and domain information
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function Back     alignment and domain information
>PRK02868 hypothetical protein; Provisional Back     alignment and domain information
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion] Back     alignment and domain information
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00