Citrus Sinensis ID: 019654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MEYRKIKDEDNDGGGSSSGDLESLRGKPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpmnwptgsAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNhegvtddnrlsttldevivyPIPAVLYLVKNLLQYYIFAyvdapgyqilknlNIISTGVLYRIILKKKLSEIQWAAFILLCCGcttaqlnsnsdrvlqtPLQGWIMAIVMALLSGFAGVYTEAIMkkrpsrninvqNFWLYVFGMAFNAVAIVIQDFDavmnkgffhgYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Flexible Loop (DISEMBL)
meyrkikdedndgggsssgDLESLRGKPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHegvtddnrlsttlDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Low Complexity Region (SEG)
MEYRKIKdedndgggsssgdleslRGKPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Disordered region (IsUnstruct)
******************************WPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH*******
Disordered Region (DISOPRED)
**********************************SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK***
Disordered Region (DISEMBL)
*********************ESLRGKPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Disordered Region (DISPRO)
*****************************NWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYRKIKDEDNDGGGSSSGDLESLRGKPMNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
F4JN00	352	CMP-sialic acid transport	yes	no	0.985	0.943	0.825	1e-165
Q8LGE9	340	CMP-sialic acid transport	no	no	0.863	0.855	0.415	3e-54
P78382	337	CMP-sialic acid transport	yes	no	0.851	0.851	0.304	2e-34
O08520	336	CMP-sialic acid transport	yes	no	0.851	0.854	0.290	3e-33
Q61420	336	CMP-sialic acid transport	yes	no	0.851	0.854	0.293	4e-33
Q9R0M8	390	UDP-galactose translocato	no	no	0.649	0.561	0.370	1e-31
P78381	396	UDP-galactose translocato	no	no	0.649	0.553	0.366	1e-31
Q8WMS0	397	UDP-galactose translocato	no	no	0.649	0.551	0.366	1e-31
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.857	0.699	0.3	1e-31
Q58DA6	393	UDP-galactose translocato	no	no	0.649	0.557	0.366	2e-31

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  580 bits (1494), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 294/356 (82%), Positives = 307/356 (86%), Gaps = 24/356 (6%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP--------------------MNWPTGSAIVTL 40
           MEYRKIKDED+    S   D+ES++GK                     +NW     +VT 
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKR-KGVVTC 56

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRL
Sbjct: 57  ALTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRL 116

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           STT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLS
Sbjct: 117 STTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLS 176

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 177 EIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPS 236

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMV
Sbjct: 237 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMV 296

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
           MKYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 297 MKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 182/306 (59%), Gaps = 15/306 (4%)

Query: 38  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 97
           V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L   W     +  
Sbjct: 9   VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFL---WREMRTSSS 65

Query: 98  NRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 155
                T D   V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ L
Sbjct: 66  TTSRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFL 125

Query: 156 KKKLSEIQWAAFILLCCGCTTAQL----NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYT 211
           K+KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YT
Sbjct: 126 KRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYT 185

Query: 212 EAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLM 266
           E +MK R +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L+
Sbjct: 186 EFLMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLV 244

Query: 267 ILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVS 326
           +LN   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG ++  +S
Sbjct: 245 VLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMS 304

Query: 327 VYLHSA 332
           ++++ A
Sbjct: 305 LHMYFA 310

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 168/296 (56%), Gaps = 9/296 (3%)

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
           +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct: 20  MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query: 98  NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
            LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
           +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|O08520|S35A1_CRIGR CMP-sialic acid transporter OS=Cricetulus griseus GN=SLC35A1 PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 169/296 (57%), Gaps = 9/296 (3%)

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
           +T++ ++  + + +++   K  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAKELYFSTTAVCVTEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 98  NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
            LS++QW +  +LC G    Q   + + +V+  Q+PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCGGVILVQWKPAQATKVVVEQSPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
           +K   + ++ V+N  +Y+ G+    V   + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLVGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F +G+++V +S+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLSFAMGALLVCISIYLY 313

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Cricetulus griseus (taxid: 10029)

>sp|Q61420|S35A1_MOUSE CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 164/296 (55%), Gaps = 9/296 (3%)

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
           +T++ ++  + + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 98  NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
           N L +   E+    +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 158 KLSEIQWAAFILLCCGCTTAQ---LNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAI 214
            LS++QW +  +LC G T  Q     +    V Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
           +K   + ++ V+N  +Y+ G+        + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGG 257

Query: 275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F LG+++V VS+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLY 313

Transport CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 134/224 (59%), Gaps = 5/224 (2%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 172 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 227
            G       Q   +  R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGSGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 228 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 287
             L +FG A   V +   +  AV ++GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVASQGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 288 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331
           +K ++TS++++L+ V S+ LFGFHL   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHLDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|P78381|S35A2_HUMAN UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 5/224 (2%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 172 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 227
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 228 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 287
             L +FG A   V +   +  AV  +GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 288 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331
           +K ++TS++++L+ V S+ LFGFH+   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|Q8WMS0|S35A2_CANFA UDP-galactose translocator OS=Canis familiaris GN=SLC35A2 PE=2 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 5/224 (2%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNMPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 172 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 227
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 228 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 287
             L +FG A   V +   +  AV  +GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVARRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 288 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331
           +K ++TS++++L+ V S+ LFGFH+   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Canis familiaris (taxid: 9615)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 170/340 (50%), Gaps = 51/340 (15%)

Query: 45  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 103
           L SS+ +L+ +S     KY+Y   T N   E +K    +A   RI   E      R   +
Sbjct: 29  LGSSRLLLVKFSANEDNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTE--RRSFRCHAS 86

Query: 104 LDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           L     Y    +PA LY + NL+ +Y+ AY+      +L N  II+T V +R+ILK++LS
Sbjct: 87  LKHFCQYMKWAVPAFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLS 146

Query: 161 EIQWAAFILL---CCGCT----TAQLN--------------SNSDRVLQTP--------- 190
            +QWA+ ++L     G T    TA                 SNS   L  P         
Sbjct: 147 CVQWASLVILFLSIMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSL 206

Query: 191 -----LQ------GWIMAIVMALLSGFAGVYTEAIMKK--RPSRNINVQNFWLYVFGMAF 237
                 Q      G  + ++  ++S  A +Y E I+K+  + S +I +QN  LYVFG+ F
Sbjct: 207 KAIANFQFLHLGLGHFLILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFF 266

Query: 238 NAVAIVIQD--FDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSV 295
           N + +V+ D  F  + + GFF+G++  +V +I   A  G++V+ ++K+ DN+  V +  +
Sbjct: 267 NGLTLVLHDEYFSKIKSCGFFYGHNGFSVALIFTTAFVGLSVAFILKFRDNMFHVLTAQI 326

Query: 296 AMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335
             ++  +VS F+F F  SL FFL + VV +S+++++A ++
Sbjct: 327 TTVIITIVSYFVFSFKPSLDFFLEAPVVLLSIFIYNASRI 366

Xenopus laevis (taxid: 8355)

>sp|Q58DA6|S35A2_BOVIN UDP-galactose translocator OS=Bos taurus GN=SLC35A2 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 5/224 (2%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYIAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 172 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 227
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGVGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 228 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 287
             L +FG A   V +   +  AV ++GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVTHRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 288 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331
           +K ++TS++++L+ V S+ LFGFH+   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
449444425	360	PREDICTED: CMP-sialic acid transporter 4	0.997	0.933	0.825	1e-168
395486311	354	CMP-sialic acid transporter-like protein	0.994	0.946	0.837	1e-166
297802420	352	At4g35335 [Arabidopsis lyrata subsp. lyr	0.985	0.943	0.831	1e-164
50198781	352	At4g35335 [Arabidopsis thaliana] gi|5197	0.985	0.943	0.828	1e-164
356501771	355	PREDICTED: probable UDP-sugar transporte	0.994	0.943	0.812	1e-164
240256164	352	Nucleotide-sugar transporter family prot	0.985	0.943	0.825	1e-163
356554409	355	PREDICTED: probable UDP-sugar transporte	0.994	0.943	0.806	1e-162
297744466	354	unnamed protein product [Vitis vinifera]	0.994	0.946	0.839	1e-161
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.988	0.471	0.838	1e-158
255564904	356	CMP-sialic acid transporter, putative [R	0.943	0.893	0.840	1e-158

>gi|449444425|ref|XP_004139975.1| PREDICTED: CMP-sialic acid transporter 4-like [Cucumis sativus]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/361 (82%), Positives = 317/361 (87%), Gaps = 25/361 (6%)

Query: 1   MEYRKIKDEDNDGGGSSSG-------DLESLR-GKPMN----------------WPTGSA 36
           MEYR+IKD++ DG G  SG       D+ESLR GKP++                W   S 
Sbjct: 1   MEYRRIKDQEKDGNGDGSGVGVAVADDIESLRAGKPISGSNVAKLGANSFDRSKWQQKS- 59

Query: 37  IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTD 96
           IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKC LSLAAL+RIW  EGVT+
Sbjct: 60  IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWGSEGVTE 119

Query: 97  DNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK 156
           DNRLSTT DEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTG+LYRIILK
Sbjct: 120 DNRLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILK 179

Query: 157 KKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMK 216
           KKLSEIQWAAFILLC GCTTAQLNSNSD VLQTP QGW+MAI+MALLSGFAGVYTEAI+K
Sbjct: 180 KKLSEIQWAAFILLCAGCTTAQLNSNSDHVLQTPFQGWVMAIIMALLSGFAGVYTEAIIK 239

Query: 217 KRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIA 276
           KRPSRN+NVQNFWLYVFGMAFNA+A+VIQDFDA+ NKGFFHGYSFITVLMILNHALSGIA
Sbjct: 240 KRPSRNVNVQNFWLYVFGMAFNAIAMVIQDFDAIANKGFFHGYSFITVLMILNHALSGIA 299

Query: 277 VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
           VSMV+KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS VVSV+VYLHS GKLQ
Sbjct: 300 VSMVLKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVAVYLHSIGKLQ 359

Query: 337 R 337
           R
Sbjct: 360 R 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395486311|gb|AFN67104.1| CMP-sialic acid transporter-like protein [Vitis vinifera]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/356 (83%), Positives = 312/356 (87%), Gaps = 21/356 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPMN-------------------WPTGSAIVTLA 41
           MEYRK+KD D D G     D+ESLRGK ++                   W   S IVTLA
Sbjct: 1   MEYRKLKDLDKDDGAVGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKS-IVTLA 58

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 101
           LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS
Sbjct: 59  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLS 118

Query: 102 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 161
           ++LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 119 SSLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 178

Query: 162 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 221
           IQWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 179 IQWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSR 238

Query: 222 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 281
           NINVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVM
Sbjct: 239 NINVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVM 298

Query: 282 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 337
           KYADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKLQR
Sbjct: 299 KYADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKLQR 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802420|ref|XP_002869094.1| At4g35335 [Arabidopsis lyrata subsp. lyrata] gi|297314930|gb|EFH45353.1| At4g35335 [Arabidopsis lyrata subsp. lyrata]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 296/356 (83%), Positives = 309/356 (86%), Gaps = 24/356 (6%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP--------------------MNWPTGSAIVTL 40
           MEYRKIKDED+   G+   D+ES++GK                     +NW     +VT 
Sbjct: 1   MEYRKIKDEDDHDVGA---DIESVKGKSHTVASSNIAMATLGVGSSERINWKR-KGVVTC 56

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRL
Sbjct: 57  ALTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRL 116

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           STT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS
Sbjct: 117 STTYDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 176

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 177 EIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPS 236

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFITVLMILNHALSGIAVSMV
Sbjct: 237 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITVLMILNHALSGIAVSMV 296

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
           MKYADNIVKVYSTSVAMLLTAVVSVFLF +HLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 297 MKYADNIVKVYSTSVAMLLTAVVSVFLFNYHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50198781|gb|AAT70424.1| At4g35335 [Arabidopsis thaliana] gi|51971024|dbj|BAD44204.1| unnamed protein product [Arabidopsis thaliana] gi|53828601|gb|AAU94410.1| At4g35335 [Arabidopsis thaliana]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 295/356 (82%), Positives = 308/356 (86%), Gaps = 24/356 (6%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP--------------------MNWPTGSAIVTL 40
           MEYRKIKDED+    S   D+ES++GK                     +NW     +VT 
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKR-KGVVTC 56

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRL
Sbjct: 57  ALTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRL 116

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           STT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLS
Sbjct: 117 STTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLS 176

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 177 EIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPS 236

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMV
Sbjct: 237 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMV 296

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
           MKYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 297 MKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501771|ref|XP_003519697.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/357 (81%), Positives = 310/357 (86%), Gaps = 22/357 (6%)

Query: 1   MEYRKIKDED--------------------NDGGGSSSGDLESLRGKPMNWPTGSAIVTL 40
           MEYRKIKDED                    ND    +   ++S R K + W   S +VTL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLSAEAETKIDSHREK-VKWKRKS-VVTL 58

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL
Sbjct: 59  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRL 118

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           +TTLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKKKLS
Sbjct: 119 TTTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKKLS 178

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 179 EIQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPS 238

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGM FNAVAI++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMV
Sbjct: 239 RNINVQNFWLYVFGMCFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMV 298

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 337
           MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++VVSV++YLHSAGK+QR
Sbjct: 299 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256164|ref|NP_680766.5| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|380876874|sp|F4JN00.1|CSTR4_ARATH RecName: Full=CMP-sialic acid transporter 4; Short=CMP-SA-Tr 4; Short=CMP-Sia-Tr 4 gi|332661100|gb|AEE86500.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 294/356 (82%), Positives = 307/356 (86%), Gaps = 24/356 (6%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP--------------------MNWPTGSAIVTL 40
           MEYRKIKDED+    S   D+ES++GK                     +NW     +VT 
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKR-KGVVTC 56

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRL
Sbjct: 57  ALTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRL 116

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           STT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLS
Sbjct: 117 STTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLS 176

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 177 EIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPS 236

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMV
Sbjct: 237 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMV 296

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
           MKYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 297 MKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554409|ref|XP_003545539.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/357 (80%), Positives = 311/357 (87%), Gaps = 22/357 (6%)

Query: 1   MEYRKIKDEDN------------------DGGGSSSGD--LESLRGKPMNWPTGSAIVTL 40
           MEYRKIKDED                   D   +S G+  ++S R K + W   S +VTL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREK-VKWKRKS-VVTL 58

Query: 41  ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL 100
           ALTVLTSSQ ILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL
Sbjct: 59  ALTVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRL 118

Query: 101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 160
           +TTLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKK+LS
Sbjct: 119 TTTLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLS 178

Query: 161 EIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 220
           EIQWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPS
Sbjct: 179 EIQWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPS 238

Query: 221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMV 280
           RNINVQNFWLYVFGM FNAVA+++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMV
Sbjct: 239 RNINVQNFWLYVFGMCFNAVAMLVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMV 298

Query: 281 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 337
           MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++VVSV++YLHSAGK+QR
Sbjct: 299 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744466|emb|CBI37728.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/356 (83%), Positives = 313/356 (87%), Gaps = 21/356 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPMN-------------------WPTGSAIVTLA 41
           MEYRK+KD D DGG     D+ESLRGK ++                   W   S IVTLA
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKS-IVTLA 58

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 101
           LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS
Sbjct: 59  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLS 118

Query: 102 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 161
           ++LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 119 SSLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 178

Query: 162 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 221
           IQWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 179 IQWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSR 238

Query: 222 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 281
           NINVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVM
Sbjct: 239 NINVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVM 298

Query: 282 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 337
           KYADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKLQR
Sbjct: 299 KYADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKLQR 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 297/354 (83%), Positives = 311/354 (87%), Gaps = 21/354 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPMN-------------------WPTGSAIVTLA 41
           MEYRK+KD D DGG     D+ESLRGK ++                   W   S IVTLA
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKS-IVTLA 58

Query: 42  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 101
           LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS
Sbjct: 59  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLS 118

Query: 102 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 161
           ++LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 119 SSLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 178

Query: 162 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 221
           IQWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 179 IQWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSR 238

Query: 222 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 281
           NINVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVM
Sbjct: 239 NINVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVM 298

Query: 282 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 335
           KYADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKL
Sbjct: 299 KYADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKL 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564904|ref|XP_002523445.1| CMP-sialic acid transporter, putative [Ricinus communis] gi|223537273|gb|EEF38904.1| CMP-sialic acid transporter, putative [Ricinus communis]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/338 (84%), Positives = 297/338 (87%), Gaps = 20/338 (5%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPMN------------------WPTGSAIVTLAL 42
           MEYRKIKDED D G +   D+ESLR K ++                  W   S IVTLAL
Sbjct: 1   MEYRKIKDEDKDEGATGD-DIESLRNKSLSVAASNVAALGGGSNDRSKWKRKS-IVTLAL 58

Query: 43  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 102
           T LTSSQAILIVWSKRAG+YEYSVTTANFLVETLKC LSLAALARIW +EGVT+DNRLST
Sbjct: 59  TFLTSSQAILIVWSKRAGRYEYSVTTANFLVETLKCVLSLAALARIWKNEGVTEDNRLST 118

Query: 103 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 162
           TLDEV VYPIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLY++ILK+KLSEI
Sbjct: 119 TLDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYQMILKRKLSEI 178

Query: 163 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 222
           QWAAFILLC GCTTAQLN +SD VLQTP QGWIMAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 179 QWAAFILLCAGCTTAQLNPSSDHVLQTPYQGWIMAIVMALLSGFAGVYTEAIIKKRPSRN 238

Query: 223 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 282
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMILNHALSGIAVSMVMK
Sbjct: 239 INVQNFWLYVFGMIFNAVAIVIQDFDAVMNKGFFHGYSLITVLMILNHALSGIAVSMVMK 298

Query: 283 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 320
           YADNIVKVY+TSVAMLLTAVVSVFLFGFHLSLAFFLGS
Sbjct: 299 YADNIVKVYATSVAMLLTAVVSVFLFGFHLSLAFFLGS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.910	0.872	0.902	4.2e-143
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.869	0.861	0.421	2e-56
ZFIN|ZDB-GENE-080716-17	337	slc35a1 "solute carrier family	0.863	0.863	0.32	2.6e-38
UNIPROTKB|F1SLS8	421	SLC35A5 "Uncharacterized prote	0.465	0.372	0.361	3.1e-38
UNIPROTKB|P78382	337	SLC35A1 "CMP-sialic acid trans	0.851	0.851	0.304	3.4e-38
UNIPROTKB|F1S0G0	339	SLC35A1 "Uncharacterized prote	0.851	0.846	0.304	4.3e-38
RGD|1311359	336	Slc35a1 "solute carrier family	0.851	0.854	0.304	7e-38
UNIPROTKB|Q3SZP1	337	SLC35A1 "Solute carrier family	0.851	0.851	0.304	1.9e-37
UNIPROTKB|Q8WMR9	337	SLC35A1 "Uncharacterized prote	0.851	0.851	0.307	1.9e-37
RGD|1564361	438	Slc35a5 "solute carrier family	0.427	0.328	0.344	2.6e-37

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 278/308 (90%), Positives = 287/308 (93%)

Query:    29 MNWPTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARI 88
             +NW     +VT ALT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RI
Sbjct:    46 INWKR-KGVVTCALTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRI 104

Query:    89 WNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTG 148
             W +EGVTDDNRLSTT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTG
Sbjct:   105 WKNEGVTDDNRLSTTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTG 164

Query:   149 VLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAG 208
             VLYRIILK+KLSEIQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAG
Sbjct:   165 VLYRIILKRKLSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAG 224

Query:   209 VYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL 268
             VYTEAI+KKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMIL
Sbjct:   225 VYTEAIIKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMIL 284

Query:   269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY 328
             NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVY
Sbjct:   285 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVY 344

Query:   329 LHSAGKLQ 336
             LHSAGKL+
Sbjct:   345 LHSAGKLR 352

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 128/304 (42%), Positives = 185/304 (60%)

Query:    38 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 97
             V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L R       T  
Sbjct:     9 VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTT- 67

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             +R++T    V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ LK+
Sbjct:    68 SRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKR 127

Query:   158 KLSEIQWAAFILLCCGCTTAQLN----SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEA 213
             KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YTE 
Sbjct:   128 KLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEF 187

Query:   214 IMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLMIL 268
             +MK R +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L++L
Sbjct:   188 LMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVL 246

Query:   269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY 328
             N   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG ++  +S++
Sbjct:   247 NLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLH 306

Query:   329 LHSA 332
             ++ A
Sbjct:   307 MYFA 310

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-080716-17 slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 96/300 (32%), Positives = 168/300 (56%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG---VTDDN 98
             +T++ ++  + + +++      Y  TTA  L E +K  LSL  L R     G        
Sbjct:    18 MTLIAATYTVALRYTRTVSTELYFSTTAVCLAEIIKLLLSLIMLVRETGDVGRCRAALVT 77

Query:    99 RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 158
              +  +  E++   +P+V+Y ++N + +   + +DA  YQ+   L I  T +   ++L + 
Sbjct:    78 HIFRSPKELLKLSVPSVVYAIQNNMAFVALSNLDAAVYQVTYQLKIPCTALCTVLMLNRS 137

Query:   159 LSEIQWAAFILLCCGCTTAQL---NSNSDRVLQTPLQGWIMAIVMALL-SGFAGVYTEAI 214
             LS +QW +  +LC G T  Q    +S   +V Q P  G+ MAI +A+L SGFAGVY E +
Sbjct:   138 LSRLQWFSVFMLCAGVTLVQWTPPHSTKVQVEQNPFLGF-MAIAVAVLCSGFAGVYFEKV 196

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+A   + + + D   V+ KGFF+GY+    L++   ++ G
Sbjct:   197 LKSSDT-SLWVRNIQMYLSGIAVTLMGVYMTDGARVLEKGFFYGYTPWVCLVVFLASVGG 255

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L F  G+++V VS+YL+   K
Sbjct:   256 MYTSVVVKYTDNIMKGFSAAAAIVLSTVASVLLFGLQITLTFISGALLVCVSIYLYGLPK 315

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1SLS8 SLC35A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
 Identities = 60/166 (36%), Positives = 99/166 (59%)

Query:   175 TTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK--RPSRNINVQNFWLYV 232
             TTAQ+ S+    ++  L G I+ IV   +S  A +Y E IMK+  + + NI VQN  LY 
Sbjct:   220 TTAQVFSH----IRLGL-GHILIIVQCFISSMANIYNEKIMKEGNQLTENIFVQNSKLYF 274

Query:   233 FGMAFNAVAIVIQ--DFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKV 290
             FG+ FN + + +Q  + D + N GFF+G++  +V +I   A+ G++V+ ++K+ DN+  V
Sbjct:   275 FGVFFNGLTLGLQSNNRDQIKNCGFFYGHNAFSVALIFVTAIQGLSVAFILKFLDNMFHV 334

Query:   291 YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
                 V  ++   VSV +F F  SL FFL +  V +S+++++A K Q
Sbjct:   335 MMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASKPQ 380

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|P78382 SLC35A1 "CMP-sialic acid transporter" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 90/296 (30%), Positives = 168/296 (56%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
             +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0015782 "CMP-N-acetylneuraminate transport" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1S0G0 SLC35A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 90/296 (30%), Positives = 170/296 (57%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    22 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLFLSVGILAKETGNLGRFKASLRE 81

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    82 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 140

Query:   158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   141 TLSKLQWISVFMLCGGVILVQWKPAEATKVMVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 200

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++   L+I   ++ G
Sbjct:   201 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFYGYTYYVWLVIFLASVGG 259

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   260 LYTSIVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 315

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

RGD|1311359 Slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 90/296 (30%), Positives = 169/296 (57%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
             +T++ ++  I + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTTAEGLYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 SLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+A       + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIAVTLAGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L+F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTVASVILFGLQITLSFTLGALLVCVSIYLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SZP1 SLC35A1 "Solute carrier family 35 (CMP-sialic acid transporter), member A1" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 90/296 (30%), Positives = 168/296 (56%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGNLGRFKASLRE 79

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFFGYTYYVWFVIFLASVGG 257

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q8WMR9 SLC35A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 91/296 (30%), Positives = 168/296 (56%)

Query:    42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 97
             +T++ ++  I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKEAGSLGRFKASLKE 79

Query:    98 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 157
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   158 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 214
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   215 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 274
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEINEKGFFYGYTYYVWFVIFLASVGG 257

Query:   275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
             +  S+V+KY DNI+K +S + A++L+   SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTFASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

RGD|1564361 Slc35a5 "solute carrier family 35, member A5" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
 Identities = 51/148 (34%), Positives = 89/148 (60%)

Query:   193 GWIMAIVMALLSGFAGVYTEAIMKK--RPSRNINVQNFWLYVFGMAFNAVAIVIQDF--D 248
             G ++ IV   +S  A +Y E I+K+  + + +I +QN  LY FG+ FN + +V+Q    D
Sbjct:   246 GHVLIIVQCFISSMANIYNEKILKEGTQHTESIFIQNSKLYFFGIVFNGLTLVLQSSNRD 305

Query:   249 AVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLF 308
              + N GFF+G++  +V++I   A  G++V+ ++K+ DN+  V    V  ++   VSV +F
Sbjct:   306 QIQNCGFFYGHNAFSVVLIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLVF 365

Query:   309 GFHLSLAFFLGSIVVSVSVYLHSAGKLQ 336
              F  SL FFL +  V +S+++++A K Q
Sbjct:   366 DFRPSLDFFLEAPSVLLSIFIYNASKPQ 393

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78382	S35A1_HUMAN	No assigned EC number	0.3040	0.8516	0.8516	yes	no
F4JN00	CSTR4_ARATH	No assigned EC number	0.8258	0.9851	0.9431	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	1e-56
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	7e-25
pfam08449	303	pfam08449, UAA, UAA transporter family	3e-09
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	2e-04

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  183 bits (467), Expect = 1e-56
 Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 7/218 (3%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +PA +Y ++N L Y   + +DA  YQ+   L I++T +   ++L +KLS  QWA+ +LL 
Sbjct: 22  VPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLF 81

Query: 172 CGCTTAQLNSNSDR------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV 225
            G    QL+  S          Q P  G    +     SGFAGVY E I+K   + +I +
Sbjct: 82  LGVAIVQLDQKSSETNSKRGAEQNPGLGLSAVLAACFTSGFAGVYFEKILKG-SNTSIWI 140

Query: 226 QNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYAD 285
           +N  LY FG+ F  +   + D  A+  KGFF GY+     ++L  A+ G+ V++V+KYAD
Sbjct: 141 RNIQLYFFGIFFALLTCWLYDGSAISEKGFFFGYTAFVWAVVLLQAVGGLVVAVVVKYAD 200

Query: 286 NIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 323
           NI+K ++TS+A++L+ V SV LF F  +L F LG+I+V
Sbjct: 201 NILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 99.7 bits (249), Expect = 7e-25
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 171
           +P  +   +N L       + A G Q+ + L I+ST ++    L   L + QW +  LL 
Sbjct: 4   VPIHIIFKQNNLVLIALGNLLAAGKQVTQ-LKILSTALMTLGSLVASLGDDQWFSLKLLK 62

Query: 172 CGCTTAQLNSNSDRVL--QTPLQGWIMAIVMALLS-GFAGVYTEAIMKKRPSRNINVQNF 228
            G    Q+  +S + L    P+ G + A++ ALLS GFAGVY E I+K   +     +N 
Sbjct: 63  LGVAIVQMVQSSAKTLMFGNPVVG-LSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNL 120

Query: 229 WLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIV 288
            L +FG+      ++  D   + N GFF GY     ++ L +   G+ +  V++YADN  
Sbjct: 121 QLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTT 180

Query: 289 KVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 330
           K + T+++++L+ + SV LF   +S  F+LG+I+V ++ +L+
Sbjct: 181 KSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 44/239 (18%), Positives = 98/239 (41%), Gaps = 20/239 (8%)

Query: 110 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 169
           Y +    + + ++L      Y+  P + I K+  +I   +L  +I  K+ S +Q+ + +L
Sbjct: 67  YVLIVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALL 126

Query: 170 LCCGCTTAQLNSNSDRVLQ-----TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNIN 224
           +  G     L S  D         +   G  +     L+    G   E + KK    +  
Sbjct: 127 ITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKE 186

Query: 225 VQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT-----VLMILNHALSGIA--- 276
           +  F+ ++  + F  + ++            F   SF       +  +L ++L+      
Sbjct: 187 MM-FYSHLLSLPFFLLGLLDIR-----TGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQF 240

Query: 277 -VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 334
            V  ++     +     T++   ++ ++SV LFG  L+L  +LG+++V + ++L++  K
Sbjct: 241 FVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLK 299

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 17/306 (5%)

Query: 33  TGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHE 92
               +  LAL +      +  +  K A +       A  L   +   L L  L       
Sbjct: 3   RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRG- 61

Query: 93  GVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR 152
                         +++  +  +   +  LL +    Y  A    ++  L  + T +L  
Sbjct: 62  ------LRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115

Query: 153 IIL-KKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYT 211
           ++L  ++LS +Q    +L   G     L           L G ++A+  ALL        
Sbjct: 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGG--GILSLLGLLLALAAALLWALYTALV 173

Query: 212 EAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA 271
           + + +  P          L +  +      +                +  +  L + +  
Sbjct: 174 KRLSRLGPV--TLALLLQLLLALLLLLLFFLSGFGAPI-----LSRAWLLLLYLGVFSTG 226

Query: 272 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 331
           L+ +     ++     +    + +  +  A++ V L G  LS A  LG+ +V + V L S
Sbjct: 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286

Query: 332 AGKLQR 337
               +R
Sbjct: 287 LRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK15430	296	putative chloramphenical resistance permease RarD;	99.95
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.95
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.94
PRK11689	295	aromatic amino acid exporter; Provisional	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.93
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.93
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.92
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.92
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.89
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.89
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.87
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.87
KOG1581	327	consensus UDP-galactose transporter related protei	99.83
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.74
KOG1580	337	consensus UDP-galactose transporter related protei	99.73
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.68
COG2962	293	RarD Predicted permeases [General function predict	99.64
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.54
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.53
KOG2766	336	consensus Predicted membrane protein [Function unk	99.47
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.45
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.44
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.43
KOG2765	416	consensus Predicted membrane protein [Function unk	99.4
KOG1582	367	consensus UDP-galactose transporter related protei	99.37
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.19
COG2510	140	Predicted membrane protein [Function unknown]	99.19
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.13
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.1
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.01
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.88
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.83
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.81
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.8
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.7
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.62
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.58
COG2510	140	Predicted membrane protein [Function unknown]	98.54
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.5
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.42
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.42
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
PRK11689	295	aromatic amino acid exporter; Provisional	98.4
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.39
PRK11272	292	putative DMT superfamily transporter inner membran	98.39
PLN00411	358	nodulin MtN21 family protein; Provisional	98.34
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.32
PRK13499	345	rhamnose-proton symporter; Provisional	98.25
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.05
PRK15430	296	putative chloramphenical resistance permease RarD;	98.02
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.0
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.99
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.9
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.86
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.83
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.79
PRK11431	105	multidrug efflux system protein; Provisional	97.78
COG2076	106	EmrE Membrane transporters of cations and cationic	97.77
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.76
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.72
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.66
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.65
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.64
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.6
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.5
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.39
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.36
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.33
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.3
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.21
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.94
COG2076	106	EmrE Membrane transporters of cations and cationic	96.9
PRK11431	105	multidrug efflux system protein; Provisional	96.77
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.72
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.55
KOG1581	327	consensus UDP-galactose transporter related protei	96.38
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.38
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.37
COG2962	293	RarD Predicted permeases [General function predict	96.29
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.27
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.17
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.98
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.49
PRK13499	345	rhamnose-proton symporter; Provisional	94.76
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.68
KOG1580	337	consensus UDP-galactose transporter related protei	94.61
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.44
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	92.32
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.31
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	91.9
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	91.33
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	89.31
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	88.56
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	87.13
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	86.9
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	86.64
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	85.06
KOG2765	416	consensus Predicted membrane protein [Function unk	83.34
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	81.82

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.4e-46  Score=338.64  Aligned_cols=299  Identities=37%  Similarity=0.593  Sum_probs=267.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCCcccccchhhhhhh
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV--TDDNRLSTTLDEVIVYP  111 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~  111 (337)
                      |+.++.+++++++.....|+++..++..|.|++.+++.|++|+.+|..+.++..|+  ++.  ...+.....|++.++.+
T Consensus        17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~   96 (345)
T KOG2234|consen   17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVS   96 (345)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHH
Confidence            78899999999999999999998778899999999999999999999988433211  110  00111235567889999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc---CCCC---c
Q 019654          112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN---SNSD---R  185 (337)
Q Consensus       112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~---~~~~---~  185 (337)
                      +|+++|+++|+++|+++.++|++++++..|+++++||+++.++|+||++++||.++++.++|+.++|.+   +.+.   .
T Consensus        97 vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~  176 (345)
T KOG2234|consen   97 VPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSES  176 (345)
T ss_pred             HHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999943   2111   1


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHH
Q 019654          186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL  265 (337)
Q Consensus       186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (337)
                      ...++..|..+++.+++++|++++|.||++|+.+. +.|+||+|++++|++++++.....|++++.+.++++||++.+|.
T Consensus       177 ~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~  255 (345)
T KOG2234|consen  177 SAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWL  255 (345)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHH
Confidence            23467899999999999999999999999998775 99999999999999999999888888877788999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          266 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       266 ~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      .++.++++|++++.++||+|++.|.+++.++++++.+.|+.+||.++|..+++|+.+|+.++++|+..|.
T Consensus       256 vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~  325 (345)
T KOG2234|consen  256 VVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA  325 (345)
T ss_pred             HHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999996665

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=3.8e-38  Score=282.79  Aligned_cols=222  Identities=41%  Similarity=0.730  Sum_probs=205.2

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       101 ~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ..++|+.+++++||++|+++|++.|++++++|++++|++.|+++++||++++++||||++++||.|+++.++|+++++.+
T Consensus        11 ~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~   90 (244)
T PF04142_consen   11 WKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLS   90 (244)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCCC------c------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcch
Q 019654          181 SNSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFD  248 (337)
Q Consensus       181 ~~~~------~------~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
                      +..+      +      ...+...|+++++++++++|+++||+||++|+.+. ++|.+|+|++.+|++++++.....+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~  169 (244)
T PF04142_consen   91 SSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGS  169 (244)
T ss_pred             CccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4321      0      01245789999999999999999999999999874 999999999999999999988777888


Q ss_pred             hhhhccccccchHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654          249 AVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV  323 (337)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV  323 (337)
                      ++.+.++++|+++.+|..++.++++|+++++++||+|++.|++++.++++++.++++++||.++|..+++|..+|
T Consensus       170 ~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  170 AISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             ccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            888889999999999999999999999999999999999999999999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=5.3e-26  Score=215.14  Aligned_cols=286  Identities=14%  Similarity=0.130  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      .|..+++.=+.+++..++.|.+-+   ...+|....+.|..++.++.+++..  +++++.   ++.+.+||++..+++.|
T Consensus        14 ~~~~~~~~q~~~~~~~~~~k~a~~---~G~~~~~~~~~R~~iA~l~Ll~~~~--~~~~~~---~~~~~~~~~~~~l~l~g   85 (358)
T PLN00411         14 FLTAMLATETSVVGISTLFKVATS---KGLNIYPFLGYSYLLASLLLLPSLF--FTNRSR---SLPPLSVSILSKIGLLG   85 (358)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH---CCCCccHHHHHHHHHHHHHHHHHHH--HHHHhc---ccCcchHHHHHHHHHHH
Confidence            488899888899999999998764   4567778899999999888877763  222211   11123466766777788


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHH------hcCCCcHHHHHHHHHHHhhhhcccccCCCC----
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNSD----  184 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~------Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~----  184 (337)
                      ++.+.++.+.+.|++|++++.++++.++.|++|+++++++      +|||++++||+|++++++|+.++...++..    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            7776788899999999999999999999999999999999      699999999999999999998876432110    


Q ss_pred             ----------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHH-HHHHHHHHHHHHhcc
Q 019654          185 ----------------RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYV-FGMAFNAVAIVIQDF  247 (337)
Q Consensus       185 ----------------~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  247 (337)
                                      ....+...|+.++++++++||++++.++|..+++++  ....+.+... .+.....+....++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~  243 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKN  243 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccC
Confidence                            001122459999999999999999999999888764  2222222222 233333333322211


Q ss_pred             hhhhhccccccchHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654          248 DAVMNKGFFHGYSFITVLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV  323 (337)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~i~~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV  323 (337)
                       +..  .....++...+ .+++.++    +..+..+.+++.++...+...+..|++++++|++++||++++.+++|+++|
T Consensus       244 -~~~--~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI  319 (358)
T PLN00411        244 -NPS--VWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI  319 (358)
T ss_pred             -Ccc--cceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence             110  00111222222 2333333    334455567888999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCC
Q 019654          324 SVSVYLHSAGK  334 (337)
Q Consensus       324 ~~gv~ly~~~~  334 (337)
                      +.|+++.+..+
T Consensus       320 l~Gv~l~~~~~  330 (358)
T PLN00411        320 TLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHhhh
Confidence            99999877543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.95  E-value=6e-25  Score=203.97  Aligned_cols=275  Identities=13%  Similarity=0.121  Sum_probs=190.7

Q ss_pred             chhHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhh
Q 019654           32 PTGSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYP  111 (337)
Q Consensus        32 ~~~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (337)
                      +.++++..++..+.|+.+++.+|..     ++++|.++++.|.+++.++.+++..  .+++. +..++..+++++.....
T Consensus         6 ~~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~   77 (296)
T PRK15430          6 TRQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMS--ICRQW-SYLKTLIQTPQKIFMLA   77 (296)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH--HHccH-HHHHHHHcCHHHHHHHH
Confidence            3445788888899999999999986     3588999999999998876666552  22111 00001012344443344


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccch
Q 019654          112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPL  191 (337)
Q Consensus       112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~  191 (337)
                      ..++....++.++|+|++++|+++++++.++.|+++++++++++|||++++||.|++++++|+.++..+.+ +    .. 
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~-  151 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP-  151 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc-
Confidence            55666788999999999999999999999999999999999999999999999999999999998754321 1    11 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHH--HHHH
Q 019654          192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL--MILN  269 (337)
Q Consensus       192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~  269 (337)
                         .+.+++++++|++.++.||..++... .....+.    +..++..+.............. ........+.  ..+.
T Consensus       152 ---~~~l~aa~~~a~~~i~~r~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~  222 (296)
T PRK15430        152 ---IIALGLAFSFAFYGLVRKKIAVEAQT-GMLIETM----WLLPVAAIYLFAIADSSTSHMG-QNPMSLNLLLIAAGIV  222 (296)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHH----HHHHHHHHHHHHHccCCccccc-CCcHHHHHHHHHHHHH
Confidence               35788899999999999886432211 2222222    2222222221110100000000 0011111111  1123


Q ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654          270 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       270 ~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l  329 (337)
                      .+++..+..+.+|+.++...+...+..|+++.++|++++||++++.+++|+++|+.|+.+
T Consensus       223 t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v  282 (296)
T PRK15430        223 TTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAI  282 (296)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            445566778888999999999999999999999999999999999999999999887654

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.95  E-value=4.3e-25  Score=205.26  Aligned_cols=280  Identities=15%  Similarity=0.186  Sum_probs=204.2

Q ss_pred             HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHH
Q 019654           42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN  121 (337)
Q Consensus        42 l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~  121 (337)
                      +.++.+++........++ +.+.|..+ .++.++.-.++-.+...  +|+...+   .....+++.++|.+.|+++...|
T Consensus        21 lsl~~~~t~~~s~~l~~~-~~~~P~~Q-s~~~Y~~l~~vy~~~~~--~r~~~~~---~~~~~~~~~w~y~lla~~Dv~aN   93 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANK-GVNIPTFQ-SFFNYVLLALVYTPILL--YRRGFKK---WLKVLKRPWWKYFLLALLDVEAN   93 (334)
T ss_pred             HHHHHHhHHHHHHHHHhc-CccCcHHH-HHHHHHHHHHHHhhhhh--hcccccc---chhhcchhHHHHHHHHHHHHHHH
Confidence            566666666666654443 33444444 45555543333233331  3432211   11122345567899999999999


Q ss_pred             HHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC----cccccchhHHHHH
Q 019654          122 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD----RVLQTPLQGWIMA  197 (337)
Q Consensus       122 ~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~----~~~~~~~~G~~l~  197 (337)
                      .+...|++|++.+.++++.++.+++++++++++||||+++.|++|++++++|+.++...+...    ...+++..|++++
T Consensus        94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~  173 (334)
T PF06027_consen   94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA  173 (334)
T ss_pred             HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence            999999999999999999999999999999999999999999999999999998876653211    1224678999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH-HH---HHHHH
Q 019654          198 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM-IL---NHALS  273 (337)
Q Consensus       198 l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~---~~a~~  273 (337)
                      +++++++|+++|++|++.|+++   ..+...++++++.+++.+.....++++..+..    +++..+.. +.   .....
T Consensus       174 l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~----w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  174 LLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIESIH----WTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             HHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhccC----CChhhHHHHHHHHHHHHHH
Confidence            9999999999999999999865   34445677888988888766544544333211    22222221 11   22233


Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          274 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       274 g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      ..++..+++..++...+....++.+++.++++++||+++++..++|.++|+.|..+|+..++
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence            45567778888888888888889999999999999999999999999999999999986544

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=4.3e-24  Score=198.47  Aligned_cols=276  Identities=13%  Similarity=0.128  Sum_probs=188.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  115 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al  115 (337)
                      .+..++..++|+++.+++|..-    ++.+|.+.+++|..++.+..+++.    ++++        .+++....   .++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~----~~~~--------~~~~~~~~---~g~   66 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFV----ARPK--------VPLNLLLG---YGL   66 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHh----cCCC--------CchHHHHH---HHH
Confidence            3567778999999999999865    468999999999988665544433    2211        11232222   233


Q ss_pred             H-HHHHHHHHHHHHhc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhH
Q 019654          116 L-YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  193 (337)
Q Consensus       116 l-~~~~~~l~f~al~~-l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G  193 (337)
                      + ...+..++|.++++ .|++.++++.++.|+++++++++++|||++++||.+++++++|+.++..++.++  .+....|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G  144 (299)
T PRK11453         67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG  144 (299)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence            2 34555677889988 789999999999999999999999999999999999999999998886432211  1123469


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHH
Q 019654          194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  273 (337)
Q Consensus       194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~  273 (337)
                      +.+++.+++++|.++++.||..++.+.........+....+.+.........+...... ..+..++...|..+++.++.
T Consensus       145 ~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~  223 (299)
T PRK11453        145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFV  223 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHH
Confidence            99999999999999999999876544211111112211222111111111112111000 00112344455555555544


Q ss_pred             hHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654          274 GIA-----VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  333 (337)
Q Consensus       274 g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~  333 (337)
                      +..     ....+++.++...+...+.+|+++.++|++++||++++.+++|+++|+.|+++...+
T Consensus       224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            443     444456677778888889999999999999999999999999999999999875433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.94  E-value=4.6e-24  Score=197.64  Aligned_cols=270  Identities=14%  Similarity=0.046  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  116 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all  116 (337)
                      +.+++..+.|+++.+.+|...    ++.+|.+.+++|..++.++.+++.   .++++. .  .   ++++.....+.|.+
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~---~~~~~~-~--~---~~~~~~~~~~~g~~   77 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFL---LLRGHP-L--P---TLRQWLNAALIGLL   77 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH---HHhCCC-C--C---cHHHHHHHHHHHHH
Confidence            567788999999999999875    368899999999999888777765   222211 1  1   12333334555554


Q ss_pred             -HHHHHHHHHHHH-hcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          117 -YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       117 -~~~~~~l~f~al-~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                       ...++.+.+.+. +++|++.++++.++.|+++++++.+ +|||++++||.|++++++|+.++..++..    +....|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G~  152 (292)
T PRK11272         78 LLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHHH
Confidence             356788889999 9999999999999999999999985 79999999999999999999887543221    1335799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHH---
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA---  271 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a---  271 (337)
                      ++.+++++++|+++++.||..+++   +......++. .+.+...+.....+. ..     ....+...|..+++.+   
T Consensus       153 l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~~l~i~~  222 (292)
T PRK11272        153 ILILIASASWAFGSVWSSRLPLPV---GMMAGAAEML-AAGVVLLIASLLSGE-RL-----TALPTLSGFLALGYLAVFG  222 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHH-HHHHHHHHHHHHcCC-cc-----cccCCHHHHHHHHHHHHHH
Confidence            999999999999999999875432   2222223322 232222222211111 00     0001223343333333   


Q ss_pred             --HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          272 --LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       272 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                        ++..+..+..|+.++...+...+.+|+++.+++++++||++|+.+++|+++|+.|+++.+..+
T Consensus       223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence              334455566788888888888999999999999999999999999999999999998766543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.94  E-value=2.2e-24  Score=200.06  Aligned_cols=269  Identities=12%  Similarity=0.098  Sum_probs=190.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHH
Q 019654           34 GSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  113 (337)
Q Consensus        34 ~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  113 (337)
                      ++++..++.++.|+++.+..|..-    ++++|....++|..++.++.+++.    ++++      .++.++..  ....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~----~~~~------~~~~~~~~--~~~~   67 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTV----GFPR------LRQFPKRY--LLAG   67 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHc----cccc------cccccHHH--HHHH
Confidence            346788889999999999999875    569999999999988876655542    1111      11112221  2233


Q ss_pred             HHHHHHHHHHHHHHHh----cCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc----
Q 019654          114 AVLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----  185 (337)
Q Consensus       114 all~~~~~~l~f~al~----~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~----  185 (337)
                      ++.++.++.+.|.+++    ++++++++++.++.|+++++++++++|||++++||.|++++++|+.++..++.+.+    
T Consensus        68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  147 (295)
T PRK11689         68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL  147 (295)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence            4446677778887775    46888999999999999999999999999999999999999999988865432110    


Q ss_pred             --ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHH
Q 019654          186 --VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT  263 (337)
Q Consensus       186 --~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (337)
                        ...+...|+.+++.+++++|.++++.||..++.+.  ..   ......+..+ .+.... +.+..      ...+...
T Consensus       148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~--~~---~~~~~~~~~l-~~~~~~-~~~~~------~~~~~~~  214 (295)
T PRK11689        148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG--IT---LFFILTALAL-WIKYFL-SPQPA------MVFSLPA  214 (295)
T ss_pred             hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hh---HHHHHHHHHH-HHHHHH-hcCcc------ccCCHHH
Confidence              00123469999999999999999999998665542  21   1111112222 111111 11110      0122233


Q ss_pred             HHHHHH----HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          264 VLMILN----HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       264 ~~~i~~----~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      |..+++    .+++..+..+.+|+.++...+...+..|+++.+++++++||++++.+++|+++|+.|+++..
T Consensus       215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence            333333    23344455677888899999999999999999999999999999999999999999986544

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.93  E-value=2.1e-22  Score=190.90  Aligned_cols=277  Identities=13%  Similarity=0.105  Sum_probs=189.3

Q ss_pred             HHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHH
Q 019654           44 VLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL  122 (337)
Q Consensus        44 ~~~~~~~i~~k~~~~~~~~~~~-~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~  122 (337)
                      .++....+..|+.-    ..+| |.++..+|.+++.+++..+.   ..+.+  +.++.....++.......|+++...+.
T Consensus        59 ~~s~~~~~~nK~vl----~~~~~P~~l~~~~~~~~~l~~~~~~---~~~~~--~~~~~~~~~~~~~~llp~gl~~~~~~~  129 (350)
T PTZ00343         59 ALNVLYVVDNKLAL----NMLPLPWTISSLQLFVGWLFALLYW---ATGFR--KIPRIKSLKLFLKNFLPQGLCHLFVHF  129 (350)
T ss_pred             HHHHHHHHHHHHHH----HhCChhHHHHHHHHHHHHHHHHHHH---HhCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33334444455543    2467 99999999999876654433   11111  111221111244456777787777777


Q ss_pred             HHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHH
Q 019654          123 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL  202 (337)
Q Consensus       123 l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~  202 (337)
                      ..+.|+++.+++.++++..+.|+++++++++++|||++++++.++++.++||.+...++.     +....|+++++++++
T Consensus       130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~  204 (350)
T PTZ00343        130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNL  204 (350)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999864221     123679999999999


Q ss_pred             HHHHHHHHHHHHhhhCCCC--chHHHHHHH--HHHHHHHHHHHHHHhcchhhhh---c--cccccchH-HHHHHHHHHHH
Q 019654          203 LSGFAGVYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIVIQDFDAVMN---K--GFFHGYSF-ITVLMILNHAL  272 (337)
Q Consensus       203 ~~a~~~v~~e~~~k~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~~~~i~~~a~  272 (337)
                      ++|+++++.||.+++++..  +....+.+.  ...+.++.++.....+......   .  ..+..+.. ..+..++..++
T Consensus       205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l  284 (350)
T PTZ00343        205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGV  284 (350)
T ss_pred             HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence            9999999999998765410  111122222  3455555555443222211000   0  00111111 11112233333


Q ss_pred             HhHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          273 SGIAVS----MVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       273 ~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      .+.+..    +.+++.++...+....+.+++++++|++++||++|+.+++|.++++.|+++|+.-|
T Consensus       285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            333333    46778889999999999999999999999999999999999999999999998653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.93  E-value=1.7e-23  Score=194.72  Aligned_cols=277  Identities=13%  Similarity=0.156  Sum_probs=187.2

Q ss_pred             HHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHH
Q 019654           44 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLL  123 (337)
Q Consensus        44 ~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l  123 (337)
                      ..+.+..+.-|+.-++   --+|....+.|..++.+.+.+.    ++... ++  +.+.++++.......|++.+.+..+
T Consensus        12 ~~~~~~~~~NK~~l~~---~~~P~~~~~~~~~~~~~~~~~~----~~~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~   81 (302)
T TIGR00817        12 FLNVYFNIYNKKLLNV---FPYPYFKTLISLAVGSLYCLLS----WSSGL-PK--RLKISSALLKLLLPVAIVHTIGHVT   81 (302)
T ss_pred             HHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHH----HHhCC-CC--CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555665432   1337888888887776554433    22111 11  1122345555677778888889999


Q ss_pred             HHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHH
Q 019654          124 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALL  203 (337)
Q Consensus       124 ~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~  203 (337)
                      .+.+++|++++.++++.++.|+++++++++++|||+++++|.+++++++|+.+...+ +.    +....|++++++++++
T Consensus        82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~-~~----~~~~~G~~~~l~a~~~  156 (302)
T TIGR00817        82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT-EL----SFNWAGFLSAMISNIT  156 (302)
T ss_pred             HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC-cc----cccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876421 11    2335699999999999


Q ss_pred             HHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccc---cch-HHHHHHHHHHHH-----Hh
Q 019654          204 SGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFH---GYS-FITVLMILNHAL-----SG  274 (337)
Q Consensus       204 ~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~i~~~a~-----~g  274 (337)
                      +|++.++.||..++++. +......+....+.++..+.....+..+....+...   ..+ ...+...+..+.     .+
T Consensus       157 ~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (302)
T TIGR00817       157 FVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ  235 (302)
T ss_pred             HHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence            99999999998873222 122223344444555544443322211111000000   001 112221222221     11


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654          275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ  336 (337)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~  336 (337)
                      ....+.+++.++...+......|++++++|++++||++|+.+++|+++++.|+++|++.|.|
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            12234678889999999999999999999999999999999999999999999999966554

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.92  E-value=9.4e-23  Score=185.34  Aligned_cols=257  Identities=14%  Similarity=0.113  Sum_probs=184.3

Q ss_pred             HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHH
Q 019654           46 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY  125 (337)
Q Consensus        46 ~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f  125 (337)
                      |+.+.+..|..-+   ...|+.++.+.|.+.+.++..++.   +++ .  +    +++++.  .....++...+++.+.|
T Consensus         1 Wg~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~---~~~-~--~----~~~~~~--~~~~~~~~~~l~~~~~~   65 (260)
T TIGR00950         1 WGTTGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLL---RRR-P--P----LKRLLR--LLLLGALQIGVFYVLYF   65 (260)
T ss_pred             CcchHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH---Hhc-c--C----HhHHHH--HHHHHHHHHHHHHHHHH
Confidence            6788899998643   357888999999888777666654   332 1  1    112222  23333344678999999


Q ss_pred             HHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHHHH
Q 019654          126 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG  205 (337)
Q Consensus       126 ~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a  205 (337)
                      .|++++|+++.+++.++.|+++++++.+++|||++++||.|+.++++|+.++..+++.    +....|+.+.+.++++++
T Consensus        66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----~~~~~G~~~~l~a~~~~a  141 (260)
T TIGR00950        66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL----SINPAGLLLGLGSGISFA  141 (260)
T ss_pred             HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc----cccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888654321    234679999999999999


Q ss_pred             HHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchH--HHHHHHHHHHHHhHHHHHHHHH
Q 019654          206 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSF--ITVLMILNHALSGIAVSMVMKY  283 (337)
Q Consensus       206 ~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~a~~g~~~~~~~~~  283 (337)
                      .++++.||..++.+..+.. .+.+....+.++..+.....+ +...    ....++  ..+..++...++..+..+.+|+
T Consensus       142 ~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  215 (260)
T TIGR00950       142 LGTVLYKRLVKKEGPELLQ-FTGWVLLLGALLLLPFAWFLG-PNPQ----ALSLQWGALLYLGLIGTALAYFLWNKGLTL  215 (260)
T ss_pred             HHHHHHhHHhhcCCchHHH-HHHHHHHHHHHHHHHHHHhcC-CCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999988766531221 121223334433333322211 1100    111111  1122223344455566677888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Q 019654          284 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSV  327 (337)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv  327 (337)
                      .++...+...+++|+++.+++++++||+++..+++|..+++.|+
T Consensus       216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            89989999999999999999999999999999999999999986

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.92  E-value=2.1e-22  Score=187.50  Aligned_cols=262  Identities=20%  Similarity=0.286  Sum_probs=198.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654           65 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  144 (337)
Q Consensus        65 ~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p  144 (337)
                      .|..+.+.......+++.+..   ...+.  + +   .+.+....+.+.++++.+++.+.+.|++|+|.++.+++++++|
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~---~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~  101 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILL---SLFKF--P-K---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKP  101 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH---Hhccc--c-C---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHH
Confidence            477888888777777666655   22211  1 1   1123334588889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 019654          145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  219 (337)
Q Consensus       145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~-----~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~  219 (337)
                      ++|++++.+++|||++++||.++++.++|+++....+..+...     .+...|+.+++.+.++.|+.++++||+.++++
T Consensus       102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~  181 (303)
T PF08449_consen  102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG  181 (303)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999987654322111     11234999999999999999999999999987


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccccchHHHHH---HHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 019654          220 SRNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVL---MILNHALSGIAVSMVMKYADNIVKVYSTSV  295 (337)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~  295 (337)
                      . +.+....+...++.++..+.... +.++......+...++...+.   ..+.++++...+.+..++.++...+..+.+
T Consensus       182 ~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~  260 (303)
T PF08449_consen  182 K-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTL  260 (303)
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHH
Confidence            6 55677777788888877765543 111111111111122222121   223445566667777888999999999999


Q ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654          296 AMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ  336 (337)
Q Consensus       296 ~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~  336 (337)
                      +.+++.++|+++|||++++.+++|.++++.|+.+|+.+++|
T Consensus       261 Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k  301 (303)
T PF08449_consen  261 RKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK  301 (303)
T ss_pred             HHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999876654

; GO: 0055085 transmembrane transport

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.92  E-value=6e-22  Score=183.59  Aligned_cols=268  Identities=12%  Similarity=-0.017  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ++..+++.++.|+.+..++|+.-    ++++|.+.+++|.+++.++.+++.   .+++.     +.  ++|+.......|
T Consensus        13 ~~~~~~la~~~~~~~~~~~K~~~----~~~~~~~~~~~R~~~a~l~l~~~~---~~~~~-----~~--~~~~~~~~~~~g   78 (293)
T PRK10532         13 PILLLLIAMASIQSGASLAKSLF----PLVGAPGVTALRLALGTLILIAIF---KPWRL-----RF--AKEQRLPLLFYG   78 (293)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHH---hHHhc-----cC--CHHHHHHHHHHH
Confidence            46888899999999999999875    358999999999999887766654   22211     11  122333344566


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                      +++...+.+.|++++|+|++.+.++.++.|+++++++.    ||.++  +.++.++++|+.++..++.+.  .+....|+
T Consensus        79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~--~~~~~~G~  150 (293)
T PRK10532         79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV--SHVDLTGA  150 (293)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc--ccCChHHH
Confidence            66788889999999999999999999999999998873    55544  455677899998875332211  12245799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHH-----HHHHHHH
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI-----TVLMILN  269 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~  269 (337)
                      ++.+++++++|++.+..||..++++.  . ....+ ...+.+...+.....+.. .       ..++.     .++.++.
T Consensus       151 ll~l~aa~~~a~~~v~~r~~~~~~~~--~-~~~~~-~~~~~~~l~~~~~~~~~~-~-------~~~~~~~~~~l~lgv~~  218 (293)
T PRK10532        151 ALALGAGACWAIYILSGQRAGAEHGP--A-TVAIG-SLIAALIFVPIGALQAGE-A-------LWHWSILPLGLAVAILS  218 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCc--h-HHHHH-HHHHHHHHHHHHHHccCc-c-------cCCHHHHHHHHHHHHHH
Confidence            99999999999999999998766542  2 22222 233333333322221110 0       01222     2333444


Q ss_pred             HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654          270 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ  336 (337)
Q Consensus       270 ~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~  336 (337)
                      +.++..+..+.+++.++...+...+++|+++.++|++++||++++.+++|+++|+.|+..+....+|
T Consensus       219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4445556667788899999999999999999999999999999999999999999999887654444

>TIGR00803 nst UDP-galactose transporter

Probab=99.89  E-value=2.7e-22  Score=178.58  Aligned_cols=219  Identities=29%  Similarity=0.445  Sum_probs=191.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC--ccc
Q 019654          110 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVL  187 (337)
Q Consensus       110 ~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~--~~~  187 (337)
                      +.+|+..|+.+|.+.+.++...++...+.. +.+.+.++++..-.++++++..||.++.....|+..++.++..+  ...
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~   80 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF   80 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence            568999999999999999999999999999 99999999999999999999999999999999999887654321  111


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH
Q 019654          188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  267 (337)
Q Consensus       188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  267 (337)
                      ++...|..+.+.+++++++.++|+|+..|+++. .++.+++++..++.+.+.......+.+...+.+++++++...|..+
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG  159 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence            355778889999999999999999999887654 7899999999999887655544444444555667778888899999


Q ss_pred             HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          268 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       268 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      +.+++++.++++++|+.|++.++++..++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            999999999999999999999999999999999999999999999999999999999999887

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.89  E-value=9e-21  Score=166.70  Aligned_cols=290  Identities=17%  Similarity=0.245  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhc---cC----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-------Ccccc
Q 019654           37 IVTLALTVLTSSQAILIVWSKR---AG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD-------NRLST  102 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~---~~----~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~-------~~~~~  102 (337)
                      ++-++++.-++.|.++.||+.+   +|    ++++-....+|+.|+.++.+-..+-   .|..+....       .+.+.
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~~   82 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDSS   82 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCcccccccccccccC
Confidence            4456677888999999999764   22    4667788999999998776533332   222222111       11112


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC-
Q 019654          103 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS-  181 (337)
Q Consensus       103 ~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~-  181 (337)
                      +.++ ..+..|++++...+.++|.|+.+++++.+|+++...++||++++..+||++++.+||+|+....+|++++...+ 
T Consensus        83 pf~p-~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~  161 (372)
T KOG3912|consen   83 PFNP-VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDV  161 (372)
T ss_pred             CCCc-ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeec
Confidence            3333 34566999999999999999999999999999999999999999999999999999999999999999987542 


Q ss_pred             --CCCc--ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHH----Hhcchhhh--
Q 019654          182 --NSDR--VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV----IQDFDAVM--  251 (337)
Q Consensus       182 --~~~~--~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--  251 (337)
                        .+++  ..++...|+++++.+.+.-|++.+++||.+|+++..|... .-+-+.+|.++..+...    .+.+++.+  
T Consensus       162 ~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~a-vg~eGlfG~v~~slL~i~m~yi~~~~sfS~~  240 (372)
T KOG3912|consen  162 HLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQA-VGWEGLFGLVILSLLAIPMYYIPSGDSFSCN  240 (372)
T ss_pred             ccccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH-hhhhhhHHHHHHHHHHHHHhheecCCcCcCC
Confidence              1221  2245678999999999999999999999999987634433 34557777444332221    12221111  


Q ss_pred             hccccccchHHHH--------HHHH------HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Q 019654          252 NKGFFHGYSFITV--------LMIL------NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF  317 (337)
Q Consensus       252 ~~~~~~~~~~~~~--------~~i~------~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~  317 (337)
                      ..+.++-+.. .|        +.+.      ..+..+..-..+.|+.++..+......+..+.++++..+.+|.+...|+
T Consensus       241 ~~g~~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqi  319 (372)
T KOG3912|consen  241 PRGVLEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQI  319 (372)
T ss_pred             CCcchhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHH
Confidence            1121111110 01        1111      1112222223456888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccC
Q 019654          318 LGSIVVSVSVYLHSA  332 (337)
Q Consensus       318 ~G~~lV~~gv~ly~~  332 (337)
                      .|.++.+.|+.+|+.
T Consensus       320 lGFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  320 LGFLILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999984

>TIGR00688 rarD rarD protein

Probab=99.89  E-value=1.1e-20  Score=171.64  Aligned_cols=249  Identities=14%  Similarity=0.057  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccch-hhhhhhH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLD-EVIVYPI  112 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i  112 (337)
                      +++..++..+.|+.+++++|..     .+++|.++++.|.+++.++.+++..  .++++.+..++.+ .+++ .......
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLL   75 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHH
Confidence            3677888899999999999984     2489999999999998766555442  1211100001111 1112 2334677


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchh
Q 019654          113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  192 (337)
Q Consensus       113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~  192 (337)
                      .+++...++.++++|++++|+++++++.++.|+++++++++++|||++++||.+++++++|+.++..++. +    ..  
T Consensus        76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~----~~--  148 (256)
T TIGR00688        76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S----LP--  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C----ch--
Confidence            7887889999999999999999999999999999999999999999999999999999999988754321 1    11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH--HHHH
Q 019654          193 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM--ILNH  270 (337)
Q Consensus       193 G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~  270 (337)
                        .+++++++++|++.+..||..++ +.  .  +.........++........++....+   ......+.++.  .+..
T Consensus       149 --~~~l~aa~~~a~~~i~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~t  218 (256)
T TIGR00688       149 --WEALVLAFSFTAYGLIRKALKNT-DL--A--GFCLETLSLMPVAIYYLLQTDFATVQQ---TNPFPIWLLLVLAGLIT  218 (256)
T ss_pred             --HHHHHHHHHHHHHHHHHhhcCCC-Cc--c--hHHHHHHHHHHHHHHHHHHhccCcccc---cCchhHHHHHHHHHHHH
Confidence              34688999999999999886542 21  1  111111122222222211112211110   00001111111  1234


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 019654          271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFL  307 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~l  307 (337)
                      .++..+....+|+.++...+...++.|+++.++++++
T Consensus       219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            4556677788899999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.87  E-value=4.5e-20  Score=170.04  Aligned_cols=271  Identities=12%  Similarity=0.090  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           36 AIVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k-~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      .++-++..+.++...+..| .+++     .++.+  +.+.....++.+|+..  ++..+ ..++..++  +........+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-----~~~~~--~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~--~~~~~~~~~~   70 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-----EPDFL--WWALLAHSVLLTPYGL--WYLAQ-VGWSRLPA--TFWLLLAISA   70 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-----hhHHH--HHHHHHHHHHHHHHHH--Hhccc-CCCCCcch--hhHHHHHHHH
Confidence            3556777889999999988 4432     22332  4444444555555542  22111 11111111  2222344555


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                      +....+..+.+.|+++.|++..+.+.++.|+++++++++++|||++++||.|+++++.|+.++..++..    .....|+
T Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~~~~~g~  146 (281)
T TIGR03340        71 VANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----QHRRKAY  146 (281)
T ss_pred             HHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----ccchhHH
Confidence            667889999999999999999999999999999999999999999999999999999999887653221    1224588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHH-HHHHHH---hcchhhhhccccccchH--HHHHHHH
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIVI---QDFDAVMNKGFFHGYSF--ITVLMIL  268 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~i~  268 (337)
                      .+.++++++++++++..|+..++.++  . ....+...++.+.. .+....   .+.....    ......  ..+...+
T Consensus       147 ~~~l~aal~~a~~~i~~k~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       147 AWALAAALGTAIYSLSDKAAALGVPA--F-YSALGYLGIGFLAMGWPFLLLYLKRHGRSMF----PYARQILPSATLGGL  219 (281)
T ss_pred             HHHHHHHHHHHHhhhhccccccchhc--c-cccHHHHHHHHHHHHHHHHHHHHHHhccchh----hhHHHHHHHHHHHHH
Confidence            88999999999999988776443321  1 00111112222221 111111   1111000    000011  1222223


Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654          269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l  329 (337)
                      ..+++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+++
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            3344445556677777777777778889999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.87  E-value=8.3e-19  Score=160.96  Aligned_cols=281  Identities=16%  Similarity=0.160  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  115 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al  115 (337)
                      +...+...+.|+......|...++   +.++....+.|......+..+..   .+++.  .  +.+...+........++
T Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~--~~~~~~~~~~~~~~~~~   78 (292)
T COG0697           9 LLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLL---LLEPR--G--LRPALRPWLLLLLLALL   78 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHH---Hhhcc--c--ccccccchHHHHHHHHH
Confidence            456666778999999888876532   46677777778887776633333   22211  0  11111111223455556


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          116 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       116 l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~-~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                      ....++.+.+.++++++++.++++.++.|++++++++ +++|||+++++|.++++++.|+.++..++..+.. + ...|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-~-~~~g~  156 (292)
T COG0697          79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-L-SLLGL  156 (292)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-H-HHHHH
Confidence            6788999999999999999999999999999999997 7779999999999999999999999875443211 1 46899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHh
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG  274 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g  274 (337)
                      .+.+++++++|++.++.|+.. +.+.  ........ ..+...........+..  . ......+....+..++..+++.
T Consensus       157 ~~~l~a~~~~a~~~~~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~i~~  229 (292)
T COG0697         157 LLALAAALLWALYTALVKRLS-RLGP--VTLALLLQ-LLLALLLLLLFFLSGFG--A-PILSRAWLLLLYLGVFSTGLAY  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCh--HHHHHHHH-HHHHHHHHHHHHhcccc--c-cCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987 3332  11111011 11111111111111110  0 0000001112222233333445


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          275 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      .+..+.++..++...+...+..|+++.+++++++||+++..+++|.++++.|+.+.+.+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~  290 (292)
T COG0697         230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR  290 (292)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            5566677777888878888999999999999999999999999999999999998876643

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.83  E-value=9.5e-19  Score=156.07  Aligned_cols=256  Identities=16%  Similarity=0.231  Sum_probs=204.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654           65 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  144 (337)
Q Consensus        65 ~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p  144 (337)
                      ++..++|...+.+++++..++.  +++..       ....+.++.+...++.+.++..++|.|++|++-++..+..+++.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~~-------~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm  120 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLK--WWKKE-------LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM  120 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--ccccc-------CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence            5788899999999998876662  32211       12234555688888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc----ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 019654          145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  220 (337)
Q Consensus       145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~----~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~  220 (337)
                      +.++++..++.|+|++..+++..++...||.+....+.+++    ...+..+|+.++...-++.|+.+..+++++|+++.
T Consensus       121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~  200 (327)
T KOG1581|consen  121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV  200 (327)
T ss_pred             hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence            99999999999999999999999999999998876533321    12356799999999999999999999999997765


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH---HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Q 019654          221 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM---ILNHALSGIAVSMVMKYADNIVKVYSTSVAM  297 (337)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~  297 (337)
                       +.+..+..+..|+.+.+....+. .+.-.....|...++...+-+   -.+.++|+.++.+.++..+++.-...+.++-
T Consensus       201 -s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk  278 (327)
T KOG1581|consen  201 -SSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK  278 (327)
T ss_pred             -cHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence             66667778888999988877543 221111112333334333333   3356778889999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          298 LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       298 ~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      +++.+++.++||+++++.|++|..+|++|+++-.
T Consensus       279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            9999999999999999999999999999987543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.74  E-value=1.2e-18  Score=152.47  Aligned_cols=265  Identities=11%  Similarity=0.110  Sum_probs=181.2

Q ss_pred             HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCcccccchhhhhhhHHHHHHHHH
Q 019654           42 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TDDNRLSTTLDEVIVYPIPAVLYLVK  120 (337)
Q Consensus        42 l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~all~~~~  120 (337)
                      -.+++.++.+..|..      +.+|.+..-.|.+..+++.+|...  +++... .+  +-++.|     +.++|+..+..
T Consensus        46 s~ff~~~~vv~t~~~------e~~p~e~a~~r~l~~mlit~pcli--y~~~~v~gp--~g~R~~-----LiLRg~mG~tg  110 (346)
T KOG4510|consen   46 SYFFNSCMVVSTKVL------ENDPMELASFRLLVRMLITYPCLI--YYMQPVIGP--EGKRKW-----LILRGFMGFTG  110 (346)
T ss_pred             HHHHhhHHHhhhhhh------ccChhHhhhhhhhhehhhhheEEE--EEeeeeecC--CCcEEE-----EEeehhhhhhH
Confidence            355555666665665      355888888887777777777552  222221 11  111122     45566777778


Q ss_pred             HHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC----C----C-cccccch
Q 019654          121 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----S----D-RVLQTPL  191 (337)
Q Consensus       121 ~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~----~----~-~~~~~~~  191 (337)
                      ..+.|+|++|++.+.+.++.++.|.+|.++++.+||||.|+..-++..+.+.||+++..++.    +    + +......
T Consensus       111 vmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~  190 (346)
T KOG4510|consen  111 VMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDI  190 (346)
T ss_pred             HHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccC
Confidence            88999999999999999999999999999999999999999999999999999999887642    1    1 1112356


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccccchHHHHHHH-H
Q 019654          192 QGWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMI-L  268 (337)
Q Consensus       192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i-~  268 (337)
                      +|....+.++++.|--.+..|++-|+.+. .+.    .+....+.+.+++.... ..++ .+..    +-+++....+ +
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msv----syf~~i~lV~s~I~~~~ig~~~-lP~c----gkdr~l~~~lGv  261 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSV----SYFSLITLVVSLIGCASIGAVQ-LPHC----GKDRWLFVNLGV  261 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhccccEEEEe----hHHHHHHHHHHHHHHhhcccee-cCcc----ccceEEEEEehh
Confidence            78889999999998888999988887653 122    22233344444443321 1221 1111    1111111111 2


Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      ...++++++...++.-.+-..+..+++..+++.++.+++|||.||++.++|+++|+.+....
T Consensus       262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            33445666666665545555678889999999999999999999999999999999987543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.73  E-value=6.1e-17  Score=139.41  Aligned_cols=218  Identities=15%  Similarity=0.204  Sum_probs=171.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCC--Cc
Q 019654          108 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS--DR  185 (337)
Q Consensus       108 ~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~--~~  185 (337)
                      +.|+..+..|.+.....+.|+++.|-++..+-.+++|+.++++.+++.+++++++++.++++.++||++....+..  +.
T Consensus        86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~  165 (337)
T KOG1580|consen   86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA  165 (337)
T ss_pred             hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence            3588888999999999999999999999999999999999999999999999999999999999999999876431  22


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH--hcchhhhhccccccchHHH
Q 019654          186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI--QDFDAVMNKGFFHGYSFIT  263 (337)
Q Consensus       186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  263 (337)
                      ++.....|.++.+++-.+.++.+..+||+-+.+...+- -.+..+.+||.+.....++.  +-|+-.   -|.+.++...
T Consensus       166 e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~-~MM~~~NlwStL~Lg~g~lfTGElweF~---yF~~RhP~~~  241 (337)
T KOG1580|consen  166 EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGT-SMMFYTNLWSTLYLGAGLLFTGELWEFF---YFVQRHPYVF  241 (337)
T ss_pred             cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCch-hhHHHHHHHHHHHhhhhheehhhHHHHH---HHHHhccHHH
Confidence            23456789999999999999999999999877654222 22345667787766555432  112100   0112233222


Q ss_pred             H---HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654          264 V---LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       264 ~---~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l  329 (337)
                      |   +..+..++|++++.....+.+....++.+.++..++++.|+++|+++++..||+|..+|+.+...
T Consensus       242 ~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  242 WDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            2   22235567888888888888888888889999999999999999999999999999999998753

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.68  E-value=6.1e-14  Score=129.76  Aligned_cols=269  Identities=11%  Similarity=0.113  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  115 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al  115 (337)
                      +++.++..+.|+++++..|...     +.++.+.+  +..++.++...+... .++ .   +   .+.++.+..-.+.|+
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~-~~~-~---~---~~~~~~~~~g~l~G~   67 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAI-FVL-P---E---FWALSIFLVGLLSGA   67 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHH-HhC-C---c---ccccHHHHHHHHHHH
Confidence            4677888999999999999874     35555554  444444433332210 221 1   1   111222222344456


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHhh-hHHHHHHHHHHHHhcCCCcHHH----HHHHHHHHhhhhcccccCCCCcc-c--
Q 019654          116 LYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSDRV-L--  187 (337)
Q Consensus       116 l~~~~~~l~f~al~~l~~~~~~ll~~-~~pl~talla~~~Lkekls~~q----w~~l~l~~~Gv~lv~~~~~~~~~-~--  187 (337)
                      .....|.+++.+.++++.+.+..+.+ +++++.++++.+++|||.++++    +.|+++.++|+.++...++++.. +  
T Consensus        68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~  147 (290)
T TIGR00776        68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE  147 (290)
T ss_pred             HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence            67889999999999999999999999 9999999999999999999999    99999999999988654322111 0  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH
Q 019654          188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN-INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM  266 (337)
Q Consensus       188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (337)
                      .+...|+.+.++++++++++.+..|+. + +++.+ ...+..-+...+.++..+.   .+.++.        .+...|..
T Consensus       148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~--------~~~~~~~~  214 (290)
T TIGR00776       148 FNFKKGILLLLMSTIGYLVYVVVAKAF-G-VDGLSVLLPQAIGMVIGGIIFNLGH---ILAKPL--------KKYAILLN  214 (290)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHc-C-CCcceehhHHHHHHHHHHHHHHHHH---hcccch--------HHHHHHHH
Confidence            223569999999999999999999865 2 33211 1112222222233332221   000000        01122222


Q ss_pred             HH---HHHHHhHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHhhhccC
Q 019654          267 IL---NHALSGIAVSMVMK-YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF----LGSIVVSVSVYLHSA  332 (337)
Q Consensus       267 i~---~~a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~----~G~~lV~~gv~ly~~  332 (337)
                      ++   ..+++..+.....+ +.+.......++..|+.+++.+++++||+.+..++    +|.++|+.|+.+...
T Consensus       215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            11   12333333333445 66667777888899999999999999999999999    999999999877543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.64  E-value=3.8e-13  Score=120.33  Aligned_cols=273  Identities=15%  Similarity=0.154  Sum_probs=183.8

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHH
Q 019654           34 GSAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  113 (337)
Q Consensus        34 ~~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  113 (337)
                      +++++.+..-++|+..+...|+.     ++.++.++..-|-+-.+.+.+..+.. .|+.+  ...+..+++|.+..+.+.
T Consensus         7 ~Gil~~l~Ay~lwG~lp~y~kll-----~~~~~~eIlahRviwS~~~~l~ll~~-~r~~~--~~~~~~~~p~~~~~~~l~   78 (293)
T COG2962           7 KGILLALLAYLLWGLLPLYFKLL-----EPLPATEILAHRVIWSFPFMLALLFL-LRQWR--ELKQLLKQPKTLLMLALT   78 (293)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHHHHHHHHHHHHHHH-HhhhH--HHHHHHhCcHHHHHHHHH
Confidence            34688888999999999999998     46889999999988766655554421 12211  112234566777777888


Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhH
Q 019654          114 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  193 (337)
Q Consensus       114 all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G  193 (337)
                      +++-..+-.++.+|..+=..-++++=...+|++..+++.+++|||+++.||+|++++.+||..-.....+     -+...
T Consensus        79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~-----lpwva  153 (293)
T COG2962          79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS-----LPWVA  153 (293)
T ss_pred             HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC-----CcHHH
Confidence            8877788888889999999999999999999999999999999999999999999999999876553221     23332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH-hcchhhhhccccc-cchHHHHHHHHHHH
Q 019654          194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFH-GYSFITVLMILNHA  271 (337)
Q Consensus       194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~i~~~a  271 (337)
                          +.-++.+++|+..-| ..|-++..++......    -.+.++..... .+..+     +.. +.+...++.+....
T Consensus       154 ----l~la~sf~~Ygl~RK-~~~v~a~~g~~lE~l~----l~p~al~yl~~l~~~~~-----~~~~~~~~~~~LLv~aG~  219 (293)
T COG2962         154 ----LALALSFGLYGLLRK-KLKVDALTGLTLETLL----LLPVALIYLLFLADSGQ-----FLQQNANSLWLLLVLAGL  219 (293)
T ss_pred             ----HHHHHHHHHHHHHHH-hcCCchHHhHHHHHHH----HhHHHHHHHHHHhcCch-----hhhcCCchHHHHHHHhhH
Confidence                344667777776554 4443322233222222    22233332222 22211     111 11112222222211


Q ss_pred             HHh---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654          272 LSG---IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  333 (337)
Q Consensus       272 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~  333 (337)
                      +..   .+.+..-|+.+-..-++.+|.+|..-.+++++++||+++..+.+..+.|-.|..+|+.+
T Consensus       220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            111   12223335556667788999999999999999999999999999999999999888743

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.54  E-value=3.9e-14  Score=130.61  Aligned_cols=223  Identities=17%  Similarity=0.239  Sum_probs=157.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc
Q 019654          106 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR  185 (337)
Q Consensus       106 ~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~  185 (337)
                      .+......|+.++++..+.+.+++++|.+.++++..+.|+++.++++++.+|+.++..+.+++....||.+....+.   
T Consensus        82 ~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---  158 (316)
T KOG1441|consen   82 PLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---  158 (316)
T ss_pred             chHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---
Confidence            33456777888999999999999999999999999999999999999999999999999999999999998876432   


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCchHHHHHHHHHHHHHHHH-HHHHHhcchhhhhccccccchHH
Q 019654          186 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP--SRNINVQNFWLYVFGMAFNA-VAIVIQDFDAVMNKGFFHGYSFI  262 (337)
Q Consensus       186 ~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  262 (337)
                        +-...|....+.+.+..++.+++.++++++++  -++.. ...++.-.+....+ |.....++... ..-....++..
T Consensus       159 --~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~-ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~  234 (316)
T KOG1441|consen  159 --SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMN-LLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT  234 (316)
T ss_pred             --cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchH-HHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh
Confidence              23478999999999999999999999996432  21221 11122222333333 22222222111 00011122222


Q ss_pred             HHHHHHHH---HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          263 TVLMILNH---ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       263 ~~~~i~~~---a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      .+..++..   -..++....++.+.+++.-+.+..+.-++....|+++|+|++|+.+.+|.++-+.|+++|++-|.
T Consensus       235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~  310 (316)
T KOG1441|consen  235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL  310 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence            22222221   11234445566666777777776666677888899999999999999999999999999996554

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.53  E-value=7.2e-13  Score=118.64  Aligned_cols=288  Identities=16%  Similarity=0.166  Sum_probs=192.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhh-hhhHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI-VYPIPA  114 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~-~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~a  114 (337)
                      ...+.+++.|=.-.+..++.+.+-+++|+ |.-++-+-.++++.++.....  .+++. .++.|...+|++.+ +.+..|
T Consensus        15 V~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~--l~~~~-~~r~r~~~sw~~~Lr~~aPta   91 (349)
T KOG1443|consen   15 VLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRR--LYQCS-VPRARVVLSWRDYLRRLAPTA   91 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHH--HHhcc-CCccccCCcHHHHHHHhhhhh
Confidence            44555567776667777887654333343 556666777788776655432  22222 22334556787554 456667


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                      +.-...-.+.+++++|++.+.|++.++..|+|+.+++..+-=||.++.-..-+++..+|+.+....+.+     -...|.
T Consensus        92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq-----f~i~Gf  166 (349)
T KOG1443|consen   92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ-----FNIEGF  166 (349)
T ss_pred             hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc-----eeehhH
Confidence            777889999999999999999999999999999999998888999999999999999999888775432     346799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCC--CchHHHHHHHHHHHHHHHHHHHHHhcch-hhhhccccccch-HHHHHHHHHH
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPS--RNINVQNFWLYVFGMAFNAVAIVIQDFD-AVMNKGFFHGYS-FITVLMILNH  270 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~i~~~  270 (337)
                      .++.++++++|+-..+.++++++.+.  +++.....++.-+-.+..++..+..++. ...+...+..++ ...+..+...
T Consensus       167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i  246 (349)
T KOG1443|consen  167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI  246 (349)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence            99999999999999999999988762  1222222333222222233322222332 221111121112 1234444444


Q ss_pred             HHHhHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654          271 ALSGIAVSMVM--------KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  333 (337)
Q Consensus       271 a~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~  333 (337)
                      +++|.. ++.+        ...+.+..+++.-..-+.+.+++..+.+|+++...++|..+...|+..|..+
T Consensus       247 ~l~g~l-aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~  316 (349)
T KOG1443|consen  247 SLGGLL-AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE  316 (349)
T ss_pred             HHHHHH-HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence            555542 3322        2233444455555666789999999999999999999999999999999544

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.47  E-value=9.8e-15  Score=127.32  Aligned_cols=246  Identities=16%  Similarity=0.205  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHH
Q 019654           66 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII  145 (337)
Q Consensus        66 ~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl  145 (337)
                      |..-.|+...+-.++=-+++.  +|++      ..+..||+   |.+.|+.+.-+|.+.-.|.||++....+++-+..++
T Consensus        48 Pt~QtFl~Y~LLalVY~~~~~--fR~~------~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip  116 (336)
T KOG2766|consen   48 PTSQTFLNYVLLALVYGPIML--FRRK------YIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIP  116 (336)
T ss_pred             ccHHHHHHHHHHHHHHhhHHH--hhhH------HHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence            566667777654443333332  4431      22344565   788888888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC---CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 019654          146 STGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN  222 (337)
Q Consensus       146 ~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~---~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~  222 (337)
                      .+.+++|++||.|+++.|..|++++..||.++..++-   +++...++..|+.++++++.++|.+++.+|.+-|+.+   
T Consensus       117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d---  193 (336)
T KOG2766|consen  117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD---  193 (336)
T ss_pred             HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc---
Confidence            9999999999999999999999999999988776531   1222347889999999999999999999999998875   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH---HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q 019654          223 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI---LNHALSGIAVSMVMKYADNIVKVYSTSVAMLL  299 (337)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~  299 (337)
                      ..+..-+++.+|.+++.+-.+. +..+....    .|++.....+   +...+...+....+|..++..-+....++-++
T Consensus       194 ~~elm~~lgLfGaIIsaIQ~i~-~~~~~~tl----~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmw  268 (336)
T KOG2766|consen  194 RVELMGFLGLFGAIISAIQFIF-ERHHVSTL----HWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMW  268 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hccceeeE----eehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHH
Confidence            3455567788899988887543 32222110    1222111111   11112223334445555666556666667788


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          300 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       300 ~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      +.++  ..||-+.+|...+..+.+..|..+|..
T Consensus       269 sl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  269 SLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             HHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            8877  789999999999999999999999963

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.45  E-value=8.8e-14  Score=122.73  Aligned_cols=222  Identities=16%  Similarity=0.258  Sum_probs=150.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc--
Q 019654          109 VYPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--  185 (337)
Q Consensus       109 ~~~i~all~~~~~~l~f~al~~-l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~--  185 (337)
                      .|.+.-..++..|.+.++|+++ +|.+...++++..++.+++++++++|+|++.+|+.++++..+|+++.....+.|.  
T Consensus        66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~  145 (330)
T KOG1583|consen   66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS  145 (330)
T ss_pred             hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence            3666656678899999999997 9999999999999999999999999999999999999999999998765322110  


Q ss_pred             ------------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH--HHhcchhhh
Q 019654          186 ------------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI--VIQDFDAVM  251 (337)
Q Consensus       186 ------------~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  251 (337)
                                  .......|+.+...+.+.+|..++|+|..+|+++.+ ..+...+.-+.+.++.++..  +..++....
T Consensus       146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Flf~~~div~~~~~~~  224 (330)
T KOG1583|consen  146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAF  224 (330)
T ss_pred             hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHHHhcchHHHHHHHHh
Confidence                        011235799999999999999999999999998862 22222332333333322211  011111110


Q ss_pred             hc-----cccccchHHHHHHHHHHHHHh-HHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 019654          252 NK-----GFFHGYSFITVLMILNHALSG-IAVSMVMKY---ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIV  322 (337)
Q Consensus       252 ~~-----~~~~~~~~~~~~~i~~~a~~g-~~~~~~~~~---~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~l  322 (337)
                      ..     ......-+..|.-++.+.+.+ .|+-.++-.   .++...+..-.++..++.++|+..|++++|+++++|+.+
T Consensus       225 ~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~l  304 (330)
T KOG1583|consen  225 KSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAAL  304 (330)
T ss_pred             cCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHH
Confidence            00     011111233444444444443 233322211   123333344456778999999999999999999999999


Q ss_pred             HHHHhhhcc
Q 019654          323 VSVSVYLHS  331 (337)
Q Consensus       323 V~~gv~ly~  331 (337)
                      |+.|..+|.
T Consensus       305 VF~Gt~~fa  313 (330)
T KOG1583|consen  305 VFFGTLLFA  313 (330)
T ss_pred             HHHHHHHHH
Confidence            999998886

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.44  E-value=2.8e-10  Score=99.70  Aligned_cols=257  Identities=15%  Similarity=0.075  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHH
Q 019654           38 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLY  117 (337)
Q Consensus        38 ~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~  117 (337)
                      ++...+....+.. +.|-..    ..+.+.-+..+|-.++.++.+.+. +.||++-      -+.+|+....|   |+.-
T Consensus        17 ll~amvsiq~Gas-~Ak~LF----P~vG~~g~t~lRl~~aaLIll~l~-RPwr~r~------~~~~~~~~~~y---GvsL   81 (292)
T COG5006          17 LLVAMVSIQSGAS-FAKSLF----PLVGAAGVTALRLAIAALILLALF-RPWRRRL------SKPQRLALLAY---GVSL   81 (292)
T ss_pred             HHHHHHHHHhhHH-HHHHHc----cccChhhHHHHHHHHHHHHHHHHh-hHHHhcc------ChhhhHHHHHH---HHHH
Confidence            3444455555554 334433    345678888899888877766654 2232211      12345554444   4445


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHH
Q 019654          118 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMA  197 (337)
Q Consensus       118 ~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~  197 (337)
                      ..-|.++|.+++.+|.+++..+-++.|+.++++    ..||..-.-|++  +.+.|..+..-.+++  ..+.+..|..+.
T Consensus        82 g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~----~sRr~~d~vwva--LAvlGi~lL~p~~~~--~~~lDp~Gv~~A  153 (292)
T COG5006          82 GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL----SSRRLRDFVWVA--LAVLGIWLLLPLGQS--VWSLDPVGVALA  153 (292)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccHHHHHHH----hccchhhHHHHH--HHHHHHHhheeccCC--cCcCCHHHHHHH
Confidence            778999999999999999999999999999876    445555445555  556666555322211  112456899999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHH
Q 019654          198 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAV  277 (337)
Q Consensus       198 l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~  277 (337)
                      +++..||+.|-+..+|.-+..+-  .....+-+ ..+.++..+.-....+     ..++   ++.....-+..++-...+
T Consensus       154 l~AG~~Wa~YIv~G~r~g~~~~g--~~g~a~gm-~vAaviv~Pig~~~ag-----~~l~---~p~ll~laLgvavlSSal  222 (292)
T COG5006         154 LGAGACWALYIVLGQRAGRAEHG--TAGVAVGM-LVAALIVLPIGAAQAG-----PALF---SPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             HHHhHHHHHHHHHcchhcccCCC--chHHHHHH-HHHHHHHhhhhhhhcc-----hhhc---ChHHHHHHHHHHHHhccc
Confidence            99999999999999998754332  11111111 1122222221111011     1111   222222212222223333


Q ss_pred             HH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh
Q 019654          278 SM-----VMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY  328 (337)
Q Consensus       278 ~~-----~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~  328 (337)
                      -|     .++..++..-+......|.++++.|++++||.+|+.||+|++.|+.+..
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            33     4455555554555667899999999999999999999999999998775

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=5.7e-11  Score=107.79  Aligned_cols=284  Identities=16%  Similarity=0.185  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  115 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al  115 (337)
                      ++..+...+.-....++-|+.-.  .++||..-.+.+-+-+..++.+.++    ++.+.-+.+  ..+|+..+++..+++
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~l----k~~~lv~~~--~l~~~~~kk~~P~~~   85 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVL----KRLGLVNFR--PLDLRTAKKWFPVSL   85 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH----HHhceeecC--CcChHHHHHHccHHH
Confidence            35555566666666677776443  3778766555444444444444443    333321111  245666677888888


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHH
Q 019654          116 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI  195 (337)
Q Consensus       116 l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~  195 (337)
                      ++...-.....+++|++.+++.+++...|+.|++.-..++|.|.+..-|.++....+|......++..     ....|+.
T Consensus        86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-----f~~~gY~  160 (314)
T KOG1444|consen   86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-----FNLRGYS  160 (314)
T ss_pred             HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-----ecchhHH
Confidence            88888888888999999999999999999999999999999999999999999999998777554322     2345899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH-HHhcchhhhhccccccchHHHHHHHHHHHHHh
Q 019654          196 MAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSFITVLMILNHALSG  274 (337)
Q Consensus       196 l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g  274 (337)
                      +++...++.+...++.|+..+..+. +-+....+=.+.+.+...+.. ..+|++....+ +-.......+..+...++.+
T Consensus       161 w~~~n~~~~a~~~v~~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~-~~~~~~~~~~~~~~lScv~g  238 (314)
T KOG1444|consen  161 WALANCLTTAAFVVYVKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLN-FDNWSDSSVLVVMLLSCVMG  238 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhh-cccccchhHHHHHHHHHHHH
Confidence            9999999999999999998876542 111111121233444444433 23444411111 10011233455555555555


Q ss_pred             HHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          275 IAVSMVM----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       275 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      ..+.|..    +..++.............+.+.+.+.+|++.++.-++|..+-+.|..+|+..+
T Consensus       239 f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  239 FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence            5555433    33344444444444455666777778899999999999999999888887544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.40  E-value=1.9e-11  Score=112.42  Aligned_cols=215  Identities=20%  Similarity=0.238  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCC---cccc
Q 019654          112 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD---RVLQ  188 (337)
Q Consensus       112 i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~---~~~~  188 (337)
                      ..+.+-+++|.....|+++++.+..+++.++.-+||-.++..+.+||+++.|.+++++.+.||+++...++.+   ....
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~  243 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS  243 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence            3445578899999999999999999999999999999999999999999999999999999999997654321   1223


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCchHHHHHHHHHHHH---HHHHHHHHHhcchhhhhccccccchHHHH
Q 019654          189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFGM---AFNAVAIVIQDFDAVMNKGFFHGYSFITV  264 (337)
Q Consensus       189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (337)
                      .+..|.++.+++|+.+|.+.+..+|-..+++ ..++  + ...++.|+   ++.-+..++.+.-   ..+-|+..+....
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi--~-lffGfvGLfnllllwP~l~iL~~~---~~e~F~lP~~~q~  317 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDI--Q-LFFGFVGLFNLLLLWPPLIILDFF---GEERFELPSSTQF  317 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccH--H-HHHHHHHHHHHHHHhHHHHHHHHh---ccCcccCCCCcee
Confidence            5689999999999999999999998877764 2232  1 22233332   2222222211110   0001111111111


Q ss_pred             HHHHHHHHHhHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          265 LMILNHALSGIAVSMVMK-----YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       265 ~~i~~~a~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      ..++...+.+.+++=.+|     ..+....+....+++..+++...++=|.++++.+++|...|+.|-+..|.
T Consensus       318 ~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  318 SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheec
Confidence            122222233333332222     23444444445567789999999999999999999999999999887663

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.1e-10  Score=103.15  Aligned_cols=227  Identities=19%  Similarity=0.195  Sum_probs=163.8

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          101 STTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       101 ~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ..+||.   |.+.+.+-.....+..-++.|++-++..+..+++.+.+++.+.++=++|+....+.+..+..+|.+...+.
T Consensus       103 ~iP~rt---Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLA  179 (367)
T KOG1582|consen  103 VIPWRT---YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLA  179 (367)
T ss_pred             ecchhH---hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhc
Confidence            345664   77788877888899999999999999999999999999999999999999999999999999999998876


Q ss_pred             CCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccch
Q 019654          181 SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYS  260 (337)
Q Consensus       181 ~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (337)
                      ++..+. +-..+|+.++-++-++.|+-+-.+||.+|.++..+ .+..++-+..|.++.+..+.. .++-.+...+...++
T Consensus       180 Ds~~sP-NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss-~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp  256 (367)
T KOG1582|consen  180 DSQTSP-NFNLIGVMMISGALLADAVIGNVQEKAMKMNPASS-SEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHP  256 (367)
T ss_pred             ccccCC-CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCc-ceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCc
Confidence            543221 22468999999999999999999999999887633 222222233344444333322 221111111222223


Q ss_pred             HHHHHHHHHH----HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654          261 FITVLMILNH----ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  333 (337)
Q Consensus       261 ~~~~~~i~~~----a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~  333 (337)
                      +.++...+.-    -+|...+-..+|..++......++.+..++.++|+++|..++|....-|..+|+.|+++-..+
T Consensus       257 ~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys  333 (367)
T KOG1582|consen  257 VRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS  333 (367)
T ss_pred             HhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence            3232222211    122223333457778888888889999999999999999999999999999999999865433

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.19  E-value=1.8e-10  Score=92.04  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=95.0

Q ss_pred             HHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH-HHHHHHH
Q 019654           45 LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLL  123 (337)
Q Consensus        45 ~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all-~~~~~~l  123 (337)
                      .|+...+..|...    ++++|.+..+.|...+.+ .+++..  ..+++.    ....++++.......+.+ ...++.+
T Consensus         2 ~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            5777888888765    348899999999998876 444332  122111    112233444445556666 4789999


Q ss_pred             HHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654          124 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  177 (337)
Q Consensus       124 ~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv  177 (337)
                      .+.|++++|++..+++.++.|+++++++++++||+++++||.|+++.+.|+.++
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.19  E-value=2.9e-10  Score=89.51  Aligned_cols=134  Identities=13%  Similarity=0.106  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  116 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all  116 (337)
                      +..++.+++++..+++.|.--    ++.+|....+.|.++...++..+.+   ..++.....  ..+.|.+....+.|+.
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl----~~vdp~~At~IRtiVi~~~l~~v~~---~~g~~~~~~--~~~~k~~lflilSGla   76 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGL----EGVDPDFATTIRTIVILIFLLIVLL---VTGNWQAGG--EIGPKSWLFLILSGLA   76 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHHHHHHHH---hcCceeccc--ccCcceehhhhHHHHH
Confidence            445667888999999999864    4577899999999887776666652   222211100  1234555566777777


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      ..++..++|.|++.=+++...-+..+.|++++++++++||||++..+|+|+.+..+|++++..
T Consensus        77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            889999999999999999999999999999999999999999999999999999999988753

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=5.1e-11  Score=105.29  Aligned_cols=262  Identities=16%  Similarity=0.156  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHH
Q 019654           66 VTTANFLVETLKCALSLAALARIWNHE-GVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  144 (337)
Q Consensus        66 ~~~~vf~re~~~l~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~p  144 (337)
                      |.-..+...++...+|+.+-.. .++. +....++...+.+........++.+.+.-....+.++|.+.+-+++=+++..
T Consensus        61 plf~t~~qcLvt~~~c~~ls~l-s~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSL-SVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence            5666666666666666654411 1111 1111122222222222233334445555566677899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchH
Q 019654          145 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNIN  224 (337)
Q Consensus       145 l~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~  224 (337)
                      +|+.++++++||+|-+..-..+-++.+.|..+-.-.+  +....-...|.++.+.++++-|+-++|++|.....++ .+|
T Consensus       140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw  216 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIW  216 (347)
T ss_pred             hHHHHhHHhhcccccccccceeehhheehheeccccc--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eeh
Confidence            9999999999999998877666555555544322111  1112345789999999999999999999987655444 688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-cchhhhhccccccchHHHHHHHHHHHHHhHHHHHHH----HHhhHHHHHHHHHHHHHH
Q 019654          225 VQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM----KYADNIVKVYSTSVAMLL  299 (337)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~----~~~~~~~~~~~~~~~~~~  299 (337)
                      ....+...+++++.++.+.+. +.+.+  .++.+.+....|..+...++.|..+.++.    |..++...++........
T Consensus       217 ~lt~ynnv~a~lLflpll~lnge~~~v--~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~a  294 (347)
T KOG1442|consen  217 RLTAYNNVNALLLFLPLLILNGEFQAV--VGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAA  294 (347)
T ss_pred             hhHHHHHHHHHHHHHHHHHHcchHHHH--cCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHH
Confidence            888888888888877766542 22222  23333346677888878888887777654    556777777776777777


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCC
Q 019654          300 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  333 (337)
Q Consensus       300 ~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~  333 (337)
                      -.++++.+.+|.-+..-|-|-.+|+.|...|+..
T Consensus       295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v  328 (347)
T KOG1442|consen  295 QTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV  328 (347)
T ss_pred             HHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence            7889999999999999999999999999988743

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.10  E-value=6.5e-10  Score=88.23  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=63.2

Q ss_pred             hhHHHHHH-HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCC
Q 019654          110 YPIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN  182 (337)
Q Consensus       110 ~~i~all~-~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~  182 (337)
                      ....|++. ..++.++++|+++.| +..+++.++.|+++++++++++|||+++++|.++++.++|++++..++.
T Consensus        37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            34445554 488999999999999 5888999999999999999999999999999999999999999977543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.01  E-value=2.1e-08  Score=83.51  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhC----CCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--cccc-c--chHHH
Q 019654          193 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNK--GFFH-G--YSFIT  263 (337)
Q Consensus       193 G~~l~l~a~~~~a~~~v~~e~~~k~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--~~~~~  263 (337)
                      |.++++.+.++.|+..++.|+.+++.    ...+......+....+.++..+.....|+.+..+.  .... .  .+...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67889999999999999999999984    22244444455566677766665544333221110  0010 0  02222


Q ss_pred             HHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          264 VLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       264 ~~~i~~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      +..++..++    .+.....++++.+++..+....+..+...++|+++|||++|..+++|.++.+.|+++|+.
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            333333232    334455677889999999999999999999999999999999999999999999999973

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.88  E-value=5.3e-08  Score=82.50  Aligned_cols=205  Identities=12%  Similarity=0.127  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCcccccchhHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  194 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~~~~~~~~G~  194 (337)
                      ++.+..|+++..|++.++++.++.+..++-.|+-++++..||+|+...+.++.++...|++++...++   +..+..+|+
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN---~~a~e~iGi  137 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN---EHADEIIGI  137 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc---hhhhhhhhH
Confidence            34578899999999999999999999999999999999999999999999999999999999876432   224678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHH-HH-----HhcchhhhhccccccchHHHHHHHH
Q 019654          195 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA-IV-----IQDFDAVMNKGFFHGYSFITVLMIL  268 (337)
Q Consensus       195 ~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~i~  268 (337)
                      ...+++++.+|++.|..++.....+.....-....++++-.++.-.. .+     .+++++..         ...|.-+.
T Consensus       138 ~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA---------~~PWG~l~  208 (290)
T KOG4314|consen  138 ACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFA---------AAPWGCLC  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHh---------hCCchhhh
Confidence            99999999999999999988765432111111122333333332211 11     12222211         11111111


Q ss_pred             HHHH----HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          269 NHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       269 ~~a~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      ..+.    .+..+.+.+-....+..+.-..++..-.+.+..+.-+-..+...+.|.++|..|-.+.-
T Consensus       209 G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii  275 (290)
T KOG4314|consen  209 GAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII  275 (290)
T ss_pred             hHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence            1110    01111111111122222223334455667778777777788888999999999976543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.83  E-value=1.6e-06  Score=78.34  Aligned_cols=214  Identities=12%  Similarity=0.177  Sum_probs=138.0

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHhhhhcccc
Q 019654          105 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQL  179 (337)
Q Consensus       105 ~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~----~l~l~~~Gv~lv~~  179 (337)
                      +.+..-.+.|++..+.+..+|.+++++..+.+.=+ ...+.+.+++.++++++|--+..++.    |+++..+|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            56666778888899999999999999998855544 47888999999999999999888876    88888899988776


Q ss_pred             cCCCCcc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccc
Q 019654          180 NSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFF  256 (337)
Q Consensus       180 ~~~~~~~---~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (337)
                      .++.+..   .++..-|+...+++.+.+..|.+..+- .+-++...+..|.+     |.++..+.......+.     ++
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqai-----Gm~i~a~i~~~~~~~~-----~~  191 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAI-----GMLIGAFIFNLFSKKP-----FF  191 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHH-----HHHHHHHHHhhccccc-----cc
Confidence            5443321   224456999999999999998888653 33222112222222     3333222221111111     11


Q ss_pred             ccchHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHhhh
Q 019654          257 HGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLA----FFLGSIVVSVSVYL  329 (337)
Q Consensus       257 ~~~~~~~~~~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~----~~~G~~lV~~gv~l  329 (337)
                      +..++...+.-+.-++++.+.....+..+....-..+.++++++.+.|.+++||+=+..    .++|.++|+.|..+
T Consensus       192 ~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  192 EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            11122222222223344444444444444444445567789999999999999997754    57888888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.81  E-value=2.1e-07  Score=80.35  Aligned_cols=219  Identities=13%  Similarity=0.153  Sum_probs=142.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccCCCCc--c
Q 019654          109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--V  186 (337)
Q Consensus       109 ~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~~~~~--~  186 (337)
                      .+..++++-+.--.-.--+++|++.+.+++..+..++.+|..-..++|.|++.....+.++..+.-.+...++....  .
T Consensus        70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~  149 (309)
T COG5070          70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK  149 (309)
T ss_pred             hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence            45566665555445555689999999999999999999999999999999999999998888777665544322110  0


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHH-HHhcchhhhhccccccchH--HH
Q 019654          187 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSF--IT  263 (337)
Q Consensus       187 ~~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~  263 (337)
                      ......|.+++...++..+..-...||..|-..... ...+.+-...+.++.+... +.+||.+..   .-.+.+.  ..
T Consensus       150 ~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n---~annl~~d~l~  225 (309)
T COG5070         150 AQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGN---LANNLSVDSLM  225 (309)
T ss_pred             hcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcch---hhcCCChHHHH
Confidence            124567999999999999988888888766432211 1122232334555444332 356664321   1112222  23


Q ss_pred             HHHHHHHHHHh--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          264 VLMILNHALSG--IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       264 ~~~i~~~a~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      |..+-.....|  .+.++..|..++..-....+....-.++.|.++|||+.+...+....+=..+..+|.
T Consensus       226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa  295 (309)
T COG5070         226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            33332111111  233444555566666666666667788899999999999999998888777666665

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.80  E-value=3e-07  Score=83.38  Aligned_cols=131  Identities=15%  Similarity=0.005  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ..+..++..+.|+...+..|...++  .+.++.+....+..++.++.++..   ...+..   ..  .+.++.......+
T Consensus       129 G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~---~~--~~~~~~~~~~~~~  198 (260)
T TIGR00950       129 GLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFA---WFLGPN---PQ--ALSLQWGALLYLG  198 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHH---HhcCCC---CC--cchHHHHHHHHHH
Confidence            4677888899999999999887532  222233343355667666666665   322211   11  1233333344444


Q ss_pred             HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhh
Q 019654          115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  175 (337)
Q Consensus       115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~  175 (337)
                      ++ ......+++.++++.+++..+++.++.|+++++++++++|||+++.||.|..+.+.|++
T Consensus       199 ~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       199 LIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            44 46788899999999999999999999999999999999999999999999999999974

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.70  E-value=7.1e-07  Score=74.26  Aligned_cols=140  Identities=13%  Similarity=0.166  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--Ccccc-----cch
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLST-----TLD  105 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~---~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~--~~~~~-----~~~  105 (337)
                      +++.+...+..+...+..|...++   .++..++.+..+.......+++++...  ..++.....  .....     +.+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF--LLEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHhhhhhhcchHH
Confidence            456677788888888888764432   346789999999999998888877653  222111000  00001     224


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654          106 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  177 (337)
Q Consensus       106 ~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv  177 (337)
                      ........+++....|...|..++++++.+.+++...|.+.+.++++++++|+++..++.|+.+.+.|+.+-
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            445667778888999999999999999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.62  E-value=3e-07  Score=72.58  Aligned_cols=64  Identities=11%  Similarity=0.096  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  178 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~  178 (337)
                      ++|..+..+.-.+++++|.+.+..+.++.++.+++++++++|||++++||+|+.+..+|++++.
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5578889999999999999999999999999999999999999999999999999999998875

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.58  E-value=7.2e-07  Score=71.02  Aligned_cols=124  Identities=16%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHHHHHH
Q 019654          202 LLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM  281 (337)
Q Consensus       202 ~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~~~~  281 (337)
                      ++||.+.++.|+..++.+  +. ..+.+....+.+ ..+.....+..+..+.. ...........++..+++..+..+.+
T Consensus         1 ~~~a~~~~~~k~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS--PL-SITFWRFLIAGI-LLILLLILGRKPFKNLS-PRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC--HH-HHHHHHHHHHHH-HHHHHHhhccccccCCC-hhhhhhhhHhhccceehHHHHHHHHH
Confidence            468889999999998754  23 233333333333 22222221111101000 00011112222223455556677788


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          282 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      ++.+.........++|+++.++++++++|++++.+++|..+++.|+.+.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9988888889999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.54  E-value=1.2e-06  Score=69.30  Aligned_cols=128  Identities=16%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCC-chHHHHHHHHHHHHHHHHHHHH-HhcchhhhhccccccchHHHHHHHHH--
Q 019654          194 WIMAIVMALLSGFAGVYTEAIMKKRPSR-NINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFHGYSFITVLMILN--  269 (337)
Q Consensus       194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~--  269 (337)
                      ..+.+++++++++..++.|--.++.++. ...+++..    ...+.....+ ...++...+      .+...|+.+..  
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiV----i~~~l~~v~~~~g~~~~~~~------~~~k~~lflilSG   74 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIV----ILIFLLIVLLVTGNWQAGGE------IGPKSWLFLILSG   74 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHH----HHHHHHHHHHhcCceecccc------cCcceehhhhHHH
Confidence            5678999999999999998777765531 11222222    1112221111 122222111      12223333222  


Q ss_pred             --HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          270 --HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       270 --~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                        .+++.++..+.+|..++....+.+.+++++++++|++++||++|..+++|..+|..|..+..
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence              23333455556677677777788999999999999999999999999999999999987654

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.50  E-value=3.3e-06  Score=78.43  Aligned_cols=70  Identities=19%  Similarity=0.286  Sum_probs=62.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          108 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       108 ~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      |..+.  +++.+.+.+.+.|+.+.|++..+=+.....++.++++..++|||+++++|.|..+.++|..++..
T Consensus        53 W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   53 WWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            34444  34678899999999999999999999999999999999999999999999999999999976553

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.42  E-value=8.3e-06  Score=77.58  Aligned_cols=142  Identities=11%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccC---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-C----Ccc-cccc
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAG---KYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TD-D----NRL-STTL  104 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~---~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~-~~-~----~~~-~~~~  104 (337)
                      +.+..++..+.++...+..|...++.   ++++++.+.......++.++++|+..  ..+... .. .    ... ...+
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~--~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL--FFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHhhhcccccch
Confidence            46777888999999999998754321   12466776666556677777777652  111100 00 0    000 0011


Q ss_pred             hh-hhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654          105 DE-VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  178 (337)
Q Consensus       105 ~~-~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~  178 (337)
                      .. +......++.|.++|.+.|.+++++++.++++....+|+++.++++++++|+++..|++|..+.+.|+.+.+
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            11 123344566788999999999999999999999999999999999999999999999999999999998754

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.42  E-value=1e-05  Score=74.99  Aligned_cols=133  Identities=14%  Similarity=0.054  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ..++.++..+.|+...+..|...+    ++++.... ...++..++..++.   ...... .    ..++.........+
T Consensus       149 G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~~-~~~~~~~~~l~~~~---~~~~~~-~----~~~~~~~~~~l~lg  215 (293)
T PRK10532        149 GAALALGAGACWAIYILSGQRAGA----EHGPATVA-IGSLIAALIFVPIG---ALQAGE-A----LWHWSILPLGLAVA  215 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----cCCchHHH-HHHHHHHHHHHHHH---HHccCc-c----cCCHHHHHHHHHHH
Confidence            357778888999999999887642    34454443 33344444444444   221110 0    11222211112233


Q ss_pred             HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ++ -.++..+++.++++++++.++++..++|++.+++++++++|+++..|++|..+.++|++.....
T Consensus       216 v~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        216 ILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            33 3567778999999999999999999999999999999999999999999999999999887543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.40  E-value=2e-05  Score=63.89  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHH
Q 019654          192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA  271 (337)
Q Consensus       192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a  271 (337)
                      .|.++++.+.++.+.+.+..|+-.++.++.+..   .    ..  ........ +            .....++.++..+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~----~~--~~~~~~~~-~------------p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---W----DF--IAALLAFG-L------------ALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---h----HH--HHHHHHHh-c------------cHHHHHHHHHHHH
Confidence            478889999999999999998887765431110   0    00  00100000 0            0124555555666


Q ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          272 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVF--LFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~--lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      +...+..+++++.+.....+.......+..+.++.  +|||++|+.+++|.++|+.|+++.++++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            66677788888887777776666666677777774  8999999999999999999998877443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.40  E-value=1.1e-05  Score=74.78  Aligned_cols=131  Identities=11%  Similarity=0.005  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ..++.++..+.|+...+..|...+    ++++.+..+.   ...++..+...  . .+.. .   ...++.........+
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~~~----~~~~~~~~~~---~~~~~l~~~~~--~-~~~~-~---~~~~~~~~~~l~~~~  222 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKYAR----GKNGITLFFI---LTALALWIKYF--L-SPQP-A---MVFSLPAIIKLLLAA  222 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccC----CCCchhHHHH---HHHHHHHHHHH--H-hcCc-c---ccCCHHHHHHHHHHH
Confidence            357788889999999999987642    2344443221   11122222111  2 1110 1   111233332333344


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      +.-.+...+++.+++++|++..+++....|++.+++++++++|+++..||+|.++.+.|+.+...
T Consensus       223 ~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        223 AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            44466788999999999999999999999999999999999999999999999999999987754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.39  E-value=1.9e-06  Score=80.21  Aligned_cols=141  Identities=9%  Similarity=0.024  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccc-----ccchhhh
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLS-----TTLDEVI  108 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~-~~~-----~~~~~~~  108 (337)
                      +.+..++..+.|+...+..|...++  +++++.+..+.....+.+..+|+..  .. ++..... ...     .......
T Consensus       146 G~~~~l~a~~~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (302)
T TIGR00817       146 GFLSAMISNITFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAF--IT-EGPPFLPHGFMQAISGVNVTKIY  220 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHH--HH-cchHHHHHHHHHhhcccCchHHH
Confidence            4577788888999998888765431  3578888888888777777777652  11 1110000 000     0111111


Q ss_pred             h-hhHHHH-HHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          109 V-YPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       109 ~-~~i~al-l~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      . ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|..+.++|+.+.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            1 223333 35566778889999999999999999999999999999999999999999999999999988654

specificities overlap.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.39  E-value=9.8e-06  Score=75.08  Aligned_cols=135  Identities=15%  Similarity=0.039  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ..+..++..+.|+...+..|....    +. +.........+...+..++.   .....  ... ...+.+........+
T Consensus       151 G~l~~l~a~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~-~~~~~~~~~~i~~l~  219 (292)
T PRK11272        151 GAILILIASASWAFGSVWSSRLPL----PV-GMMAGAAEMLAAGVVLLIAS---LLSGE--RLT-ALPTLSGFLALGYLA  219 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC----Cc-chHHHHHHHHHHHHHHHHHH---HHcCC--ccc-ccCCHHHHHHHHHHH
Confidence            356777788899988888776532    11 23333344444444444443   22111  100 111223322333334


Q ss_pred             HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      +. -.+...+++.++++++++..+++..+.|+++++++++++||+++..||+|..+.+.|+.+....
T Consensus       220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            43 3567789999999999999999999999999999999999999999999999999999887543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.34  E-value=1.5e-05  Score=75.91  Aligned_cols=63  Identities=19%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          118 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       118 ~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      .+...++++++++++++.+++...+.|++++++++++++|++++.|++|.++.+.|+.++..+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            346667888999999999999999999999999999999999999999999999999998754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.32  E-value=1.7e-05  Score=73.00  Aligned_cols=130  Identities=13%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhc-chhhhhccccccchHHHHH--HHHHH
Q 019654          194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVMNKGFFHGYSFITVL--MILNH  270 (337)
Q Consensus       194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~i~~~  270 (337)
                      ..+.+++++++|...+.+||..++++.  .  + .+....+.+...+...... ......   . ...+..+.  .....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~--~-~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~   73 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPD--F--L-WWALLAHSVLLTPYGLWYLAQVGWSR---L-PATFWLLLAISAVAN   73 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhH--H--H-HHHHHHHHHHHHHHHHHhcccCCCCC---c-chhhHHHHHHHHHHH
Confidence            467889999999999999988776432  1  1 2222223333333222210 100000   0 00111111  11223


Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      +.+..+..+.+++.+.....+..+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            33445556677888888888888999999999999999999999999999999999876543

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.25  E-value=0.0016  Score=61.32  Aligned_cols=167  Identities=11%  Similarity=-0.017  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchhhhhhhHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPIP  113 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~  113 (337)
                      .++.+++..++|++..+-.|..++..-+.|.- ..-++.+++.-. ....+.  .+. .   ..... .+.+.+..-.+.
T Consensus         8 G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~-~~g~~~--~~~-f---~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          8 GIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPW-LIAALL--LPD-F---WAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             HHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHH-HHHHHH--hhh-H---HHHHHhcCHHHHHHHHHH
Confidence            57889999999999999999876543333433 222233332110 011110  010 0   00111 233454455667


Q ss_pred             HHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCC---c----HHHHHHHHHHHhhhhcccc----cC
Q 019654          114 AVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKL---S----EIQWAAFILLCCGCTTAQL----NS  181 (337)
Q Consensus       114 all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekl---s----~~qw~~l~l~~~Gv~lv~~----~~  181 (337)
                      |++-.+.|..++.+++++..+. ..+-..++.+..+++..++++|=-   +    ..-..|+++..+|+.+...    .+
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            7888899999999999999984 455668889999999999988532   3    3356778888889888776    32


Q ss_pred             CCCc----ccccchhHHHHHHHHHHHHHHHHH
Q 019654          182 NSDR----VLQTPLQGWIMAIVMALLSGFAGV  209 (337)
Q Consensus       182 ~~~~----~~~~~~~G~~l~l~a~~~~a~~~v  209 (337)
                      ..++    +..+...|+..++++.+.+++++.
T Consensus       160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             cccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence            2111    123456799999999999999883

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.05  E-value=0.00016  Score=67.25  Aligned_cols=142  Identities=11%  Similarity=0.021  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-ccccchhhhhhhHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPIPA  114 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~a  114 (337)
                      -++.++..+.|+...+..|...+.. .+.......+....+..+.......  ..+........ ...++..+......+
T Consensus       145 ~~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        145 FMLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASL--ILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHH--HhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            4667778889999999988653211 1112222233222222221111110  11111000000 011223332233333


Q ss_pred             HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ++ -.+...+++.++++++++..+.+..+.|++.+++++++++|+++..||+|..+.++|+.+...+
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            33 2457778889999999999999999999999999999999999999999999999999887654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.02  E-value=0.00028  Score=65.49  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=86.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhc-chhhhhccccccchHHHH--H
Q 019654          189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQD-FDAVMNKGFFHGYSFITV--L  265 (337)
Q Consensus       189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~  265 (337)
                      +...|+.++++++++||...++.|.. .+.   ++......-..++.++..+...... .++... . ........+  .
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~---~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~   78 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV---PADEILTHRVIWSFFFMVVLMSICRQWSYLKT-L-IQTPQKIFMLAV   78 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-H-HcCHHHHHHHHH
Confidence            44679999999999999999999653 332   2322222223334433333222211 111100 0 001111111  2


Q ss_pred             HHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          266 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       266 ~i~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      ..+..++...+..+.+++.+........++.|+++.++++++++|+++..+++|.++.+.|+.+.
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li  143 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            22233344556667778888888888899999999999999999999999999999999998754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.00  E-value=4.1e-05  Score=62.05  Aligned_cols=66  Identities=12%  Similarity=0.015  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHH--HhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~--~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ++|.++..+...+++..|++.+.-+.+..+..+++.++.  ++||+++..||+|+.+.++|+.++..+
T Consensus        56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            447889999999999999999999999998888888885  899999999999999999999998754

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.99  E-value=0.00018  Score=67.04  Aligned_cols=144  Identities=17%  Similarity=0.147  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      +++++++..+..+.+.+..+...+  +++.++.+.++...++++.+..+........+..+..+...+++.........+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            367788888888888888865443  256778999999999988877665521001111111111112223333445555


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      +.....+...+.-.+..++.+.+++..++-+++.+++..++++++++.||.|+++.+.|..+-..+
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            656666677777889999999999999999999999999999999999999999999999876543

; GO: 0055085 transmembrane transport

>TIGR00688 rarD rarD protein

Probab=97.90  E-value=0.00074  Score=61.16  Aligned_cols=135  Identities=12%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHH-hcchhh-hhccccccchHHHHH--HH
Q 019654          192 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAV-MNKGFFHGYSFITVL--MI  267 (337)
Q Consensus       192 ~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~--~i  267 (337)
                      .|..++++++++|+...+..|. ..+.   ++......=..++.++..+.... .+++.. ...............  ..
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~---~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL---PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC---CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            3788999999999999999986 3332   23222222223333332222211 111110 000000000111111  11


Q ss_pred             HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          268 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       268 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      +..++...+..+.+++.+........++.|++++++++++++|+++..+++|.++.+.|+.+.
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            123334455566678877777778889999999999999999999999999999999998654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.86  E-value=0.00014  Score=57.91  Aligned_cols=70  Identities=11%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          111 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       111 ~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      .+.-++|.++..+...+++++|.+.+..+ .....+.+++.+.+++||+++..|++++.+.++|++.+...
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            34445688899999999999999977766 57999999999999999999999999999999999888653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.83  E-value=0.00018  Score=56.54  Aligned_cols=67  Identities=16%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          113 PAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       113 ~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      .-++|.++..+...+++++|.+.+..+ .....+.+++.+++++||++++.|+.|+.+.++|++.+..
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            335578888888999999999977666 6789999999999999999999999999999999998854

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.79  E-value=0.00037  Score=64.53  Aligned_cols=131  Identities=10%  Similarity=0.010  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ..+..++..+.++...+..|...      ++|.+.++....--++.+..+.. .+++.  ++.     ..+..+...+.|
T Consensus       153 Gi~~~l~sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~--~~~-----~~~~~~~~~~~G  218 (290)
T TIGR00776       153 GILLLLMSTIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNL-GHILA--KPL-----KKYAILLNILPG  218 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHH-HHhcc--cch-----HHHHHHHHHHHH
Confidence            35666777888888888888652      55655544333211111111110 02111  111     112223344477


Q ss_pred             HHHHHHHHHHHHHHh-cCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHhhhhcccc
Q 019654          115 VLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL  179 (337)
Q Consensus       115 ll~~~~~~l~f~al~-~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw----~~l~l~~~Gv~lv~~  179 (337)
                      +...+.+.+++.+.+ +.+++.+.++.+..|+..++++++++||+.+++|+    +|.++...|+.++..
T Consensus       219 i~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       219 LMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            777888999999999 99999999999999999999999999999999999    999999999887653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.78  E-value=0.00024  Score=55.31  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654          112 IPAVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  178 (337)
Q Consensus       112 i~all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~  178 (337)
                      +.-++|..+..+.-.+++.+|.++ |.+-.....+.+++.+++++||++++.|+.++.+...|++.+.
T Consensus        34 ~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         34 ITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            334557888899999999999995 5556679999999999999999999999999999999998874

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.77  E-value=0.0002  Score=55.32  Aligned_cols=69  Identities=19%  Similarity=0.264  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          111 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       111 ~i~all~~~~~~l~f~al~~l~~~-~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      .+.-+.+..+..+.-.|++++|.+ .|.+-.....+.+++.+++++||+++..|++++.+..+|++.+..
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            333455778888888999999999 566777899999999999999999999999999999999987643

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.76  E-value=0.00022  Score=55.81  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChhH-HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654          111 PIPAVLYLVKNLLQYYIFAYVDAPG-YQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  177 (337)
Q Consensus       111 ~i~all~~~~~~l~f~al~~l~~~~-~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv  177 (337)
                      .+.-+.|.++..+.-.+++++|.++ |.+-.....+.+++.+.+++||++++.|+.++.+.+.|++.+
T Consensus        39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3334557888889999999999995 556667899999999999999999999999999999999876

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.72  E-value=0.00084  Score=60.91  Aligned_cols=118  Identities=12%  Similarity=0.020  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      .++.++...+.+..-.++.|+..      .++.+. ++-+.++.++...++.  ...++  + .+.+..|+    -.+.|
T Consensus       139 gi~~Ll~stigy~~Y~~~~~~~~------~~~~~~-~lPqaiGm~i~a~i~~--~~~~~--~-~~~k~~~~----nil~G  202 (269)
T PF06800_consen  139 GILALLISTIGYWIYSVIPKAFH------VSGWSA-FLPQAIGMLIGAFIFN--LFSKK--P-FFEKKSWK----NILTG  202 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC------CChhHh-HHHHHHHHHHHHHHHh--hcccc--c-ccccchHH----hhHHH
Confidence            35667777777777777777753      344433 4456666666555442  11111  1 11123344    46788


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI  168 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~  168 (337)
                      +++.+.|.+++++.+....++...+.|+.++..++-+.++||||=+++++..+.
T Consensus       203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            999999999999999999999999999999999999999999999999886554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.66  E-value=0.00048  Score=54.32  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=50.1

Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      ++...+..+++++.+........+++++++.++|+++|||++|+.+++|.++++.|+.+..
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3344556677787776666666668999999999999999999999999999999987654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.65  E-value=0.0025  Score=57.99  Aligned_cols=131  Identities=20%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFL-VETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~-re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      .++.++..+.++...+..|...     +.++....+. ..........+..   ... .  +   ....++........+
T Consensus       156 ~~~~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~--~---~~~~~~~~~~~~~~g  221 (292)
T COG0697         156 LLLALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFF---LSG-F--G---APILSRAWLLLLYLG  221 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHH---hcc-c--c---ccCCHHHHHHHHHHH
Confidence            4666777888887777777553     2333343332 2111112222222   111 1  0   112233444455555


Q ss_pred             HHHH-HHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll~~-~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ++.. ....+.+.+++..+++..+.+..+.|++.+++++++++|+++..++.|..+.+.|+.+....
T Consensus       222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         222 VFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            5544 58889999999999999999999999999999999999999999999999999999887643

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.64  E-value=0.00055  Score=63.63  Aligned_cols=116  Identities=13%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHH
Q 019654          189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL  268 (337)
Q Consensus       189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  268 (337)
                      +..+|..+.+.++++.+.+.+++||-.++.+..+..... .      ..                +..  .++..|..++
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-~------~~----------------~~l--~~~~W~~G~~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-G------GR----------------SYL--RRPLWWIGLL   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-h------hh----------------HHH--hhHHHHHHHH
Confidence            567899999999999999999999987765421110000 0      00                000  0233344444


Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654          269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l  329 (337)
                      ..+++...-...+.+++.....+...++.+++.+++..+++|+++...++|.++++.|..+
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence            4455555444566678888889999999999999999999999999999999999999754

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.60  E-value=0.0017  Score=51.28  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          272 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      .......+..++.++ .......+.|+++.++|+++++|+++...++|.++++.|+.+...++
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            444556667788775 55567788999999999999999999999999999999998765443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.50  E-value=0.0013  Score=52.39  Aligned_cols=66  Identities=26%  Similarity=0.283  Sum_probs=48.8

Q ss_pred             HHHhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCCC
Q 019654          271 ALSGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ  336 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~~  336 (337)
                      ++.-.+.+.++|+.+-... ...+....+.+.++|+++|||++|+.+++|.++|+.|+...+...++
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~  107 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK  107 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence            3444556666776543332 23345678889999999999999999999999999999877755444

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.39  E-value=0.0036  Score=55.61  Aligned_cols=129  Identities=16%  Similarity=0.069  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH-
Q 019654           38 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-  116 (337)
Q Consensus        38 ~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all-  116 (337)
                      +.+..-.+|+.-.+..|-.-+    .-+-.+.+-....++.++.+|+-   ..+.+.    .+ .++.-+..-...+++ 
T Consensus       152 ~Al~AG~~Wa~YIv~G~r~g~----~~~g~~g~a~gm~vAaviv~Pig---~~~ag~----~l-~~p~ll~laLgvavlS  219 (292)
T COG5006         152 LALGAGACWALYIVLGQRAGR----AEHGTAGVAVGMLVAALIVLPIG---AAQAGP----AL-FSPSLLPLALGVAVLS  219 (292)
T ss_pred             HHHHHhHHHHHHHHHcchhcc----cCCCchHHHHHHHHHHHHHhhhh---hhhcch----hh-cChHHHHHHHHHHHHh
Confidence            344456678887777755431    22334556666777777788877   333221    11 122211111111222 


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654          117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  178 (337)
Q Consensus       117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~  178 (337)
                      -.+-..+-.++++++|..++.++.+..|.+.++..+.+|+|.+|..||+++....++.+=..
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~  281 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST  281 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence            23455677789999999999999999999999999999999999999999998887776433

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0011  Score=60.88  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      +.+.+.....|.|+.+-|++..+-+.++..+..++++..+||||++....+|..+.++|-.++...
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            346889999999999999999999999999999999999999999999999999999997666543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.33  E-value=0.00049  Score=64.01  Aligned_cols=142  Identities=13%  Similarity=0.102  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCcccccch-hhhhhhH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL-AALARIWNHEGVTDDNRLSTTLD-EVIVYPI  112 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i  112 (337)
                      ++....+..+..+.+-++.|....+.+++.++.+......-+.+++.+ |+..   ..++..........|. +......
T Consensus       164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  164 GFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccchhhHHHHH
Confidence            457777788889999999987664445778888887777667777777 7662   2222111000111121 2344555


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      .++++...|...|..+.+++|-++++....|=+++...++++++|++++.|..|.++..+|+.+-..
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999999999987643

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.30  E-value=0.0011  Score=50.50  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhHH-HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 019654          115 VLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFIL  169 (337)
Q Consensus       115 ll~~~~~~l~f~al~~l~~~~~-~ll~~~~pl~talla~~~Lkekls~~qw~~l~l  169 (337)
                      .+|..+..+.-.+++++|.+.+ .+......+.+++.+.+++||+++..||.|+.+
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            3578888999999999999966 455679999999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.21  E-value=0.0046  Score=48.60  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          275 IAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       275 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      .+.+.++|+.+-... ..-+....+.++++|+++|||++|+.+++|..+|+.|+...+...
T Consensus        45 ~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344555655432222 223445778889999999999999999999999999998776543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.94  E-value=0.0028  Score=49.82  Aligned_cols=69  Identities=17%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654          109 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  177 (337)
Q Consensus       109 ~~~i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv  177 (337)
                      +|.+|=++|-..+..+|+.+...|.+.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.++|+.+.
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            3677778899999999999999999977766 69999999999988888888999999999999999764

Many members are annotated as potential transmembrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.011  Score=45.70  Aligned_cols=62  Identities=29%  Similarity=0.289  Sum_probs=46.9

Q ss_pred             HHHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          271 ALSGIAVSMVMKYADN-IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      .+...+.+..+|+.+- +.-+.-+....+.+++.|+++|||++|+..++|..+++.|+..-+.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3344556667776542 2233455667889999999999999999999999999999986554

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.77  E-value=0.019  Score=44.65  Aligned_cols=61  Identities=16%  Similarity=0.097  Sum_probs=44.9

Q ss_pred             HHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          272 LSGIAVSMVMKYADN-IVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       272 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      +...+.+.++|..+- +.-+.-+....+.+.++|+++|||++|+.+++|..+++.|+..-+.
T Consensus        41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            333445556665432 2223445567788999999999999999999999999999987653

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.72  E-value=0.02  Score=44.83  Aligned_cols=60  Identities=17%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             HHhHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhcc
Q 019654          272 LSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       272 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      +...+.+.++|+.+-. .-..-+....+.+.++|+++|||++|+.+++|..+|+.|+..-+
T Consensus        47 ~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         47 AAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3344556666664422 22334456678889999999999999999999999999997653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.55  E-value=0.11  Score=49.00  Aligned_cols=137  Identities=13%  Similarity=0.008  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  116 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all  116 (337)
                      ++++...++++.+.+.-+..-    ++.++.+..-+-.+++++++.+.....-++ +   .....-+++....+..-+++
T Consensus       171 ll~l~~a~lya~~nV~~E~~v----~~~~~~~~lg~~Glfg~ii~~iq~~ile~~-~---i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  171 LLALLGAILYAVSNVLEEKLV----KKAPRVEFLGMLGLFGFIISGIQLAILERS-G---IESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHHHHHHHHHheehh-h---hhccCCChhhHHHHHHHHHH
Confidence            666777888888888877643    235566666666677777766544211111 1   11111122222111111222


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654          117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  181 (337)
Q Consensus       117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~  181 (337)
                      -+....+.-..+++.+|+..++=.-+..+...++..++.|+++++..++|.++..+|+++....+
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            23333344567888999989998899999999999999999999999999999999999886543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.38  E-value=0.04  Score=50.37  Aligned_cols=136  Identities=14%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHhHHHHHH-HHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-ccccchhhhhhhH
Q 019654           35 SAIVTLALTVLTSSQAILI-VWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPI  112 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~-k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i  112 (337)
                      .+.++....++.+....-- +.-+   ++..++...++-.++...+....-+   ..+....+... ...++.-.+-+.+
T Consensus       173 G~~Ll~~~L~fDgfTn~tQd~lf~---~~k~s~~~mM~~vNLf~~i~~~~~l---i~qg~~~~av~F~~~hp~~~~Di~l  246 (327)
T KOG1581|consen  173 GILLLFGYLLFDGFTNATQDSLFK---KYKVSSLHMMFGVNLFSAILNGTYL---ILQGHLLPAVSFIKEHPDVAFDILL  246 (327)
T ss_pred             hHHHHHHHHHHHhhHHhHHHHHhc---cCCccHhHHHHHHHHHHHHHHHHhh---hcCCCCchHHHHHHcChhHHHHHHH
Confidence            3666666655554433222 2222   4667889999988888776655443   22211111111 1223322222445


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654          113 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  176 (337)
Q Consensus       113 ~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l  176 (337)
                      .+.+.++...+.|+-++.-.+-+.+.+.-+.=++..+++.+..+.++++.||.|+.+.|.|...
T Consensus       247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            5566688888888899888888999999999999999999999999999999999998888765

>TIGR00803 nst UDP-galactose transporter

Probab=96.38  E-value=0.059  Score=47.64  Aligned_cols=66  Identities=18%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654          111 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  176 (337)
Q Consensus       111 ~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l  176 (337)
                      ....++......+....+++.++.+.+....+.++++++++.++++|+++..||.|..+.+.|+.+
T Consensus       156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            344455677888889999999999999999999999999999999999999999999999998753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.37  E-value=0.39  Score=39.31  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHH
Q 019654          194 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  273 (337)
Q Consensus       194 ~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~  273 (337)
                      .++.+.+..+-++++..+-++.++..+  ++.-...-...+.+...+.....+..+..   .....+++.|+.-+..+..
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs--~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGS--PLVASFISFGVGFILLLIILLITGRPSLA---SLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHHhcccccc---hhccCChHHhccHHHHHHH
Confidence            456778888888888898888877652  33333333444555554444332221111   1222345555432332222


Q ss_pred             hHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHhhh
Q 019654          274 GIAVSMVMKYADNIVKVYSTS-VAMLLTAVVSVF-LF---GFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       274 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~lls~~-lf---ge~~t~~~~~G~~lV~~gv~l  329 (337)
                      -....+.....+......... -+.+.+.+++.+ +|   .+++|+..++|.++++.|+.+
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            233344445554444333322 345567777765 33   578999999999999999864

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.29  E-value=0.17  Score=46.23  Aligned_cols=132  Identities=14%  Similarity=0.043  Sum_probs=93.9

Q ss_pred             HHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHH
Q 019654           39 TLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYL  118 (337)
Q Consensus        39 ~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~  118 (337)
                      .+.+++.++.-+.+-|..+      .++.+...+..+.-+..++..+.  +-....+  --..........+...|..-+
T Consensus       153 al~la~sf~~Ygl~RK~~~------v~a~~g~~lE~l~l~p~al~yl~--~l~~~~~--~~~~~~~~~~~LLv~aG~vTa  222 (293)
T COG2962         153 ALALALSFGLYGLLRKKLK------VDALTGLTLETLLLLPVALIYLL--FLADSGQ--FLQQNANSLWLLLVLAGLVTA  222 (293)
T ss_pred             HHHHHHHHHHHHHHHHhcC------CchHHhHHHHHHHHhHHHHHHHH--HHhcCch--hhhcCCchHHHHHHHhhHHHH
Confidence            3445666777777777764      44666666655555555555442  2221110  001123445555666666667


Q ss_pred             HHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          119 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       119 ~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      +--.++-.|-+++|.++.-++.+..|...-+++.+++||+++..|+.+-+..-+|+++...+
T Consensus       223 vpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         223 VPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999999999999999999999999999999999999999999999999887653

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.27  E-value=0.04  Score=43.36  Aligned_cols=108  Identities=17%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHHHhHHHH
Q 019654          199 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS  278 (337)
Q Consensus       199 ~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g~~~~  278 (337)
                      +-+++|++.+-+.||-.+..+....-.+ ...   ....    . +.              ++..+...+.+..|.....
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~-~~~---~~~~----L-l~--------------n~~y~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASLQ-LLQ---EIKF----L-LL--------------NPKYIIPFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchHH-HHH---HHHH----H-HH--------------hHHHHHHHHHHHHHHHHHH
Confidence            3467899999999998876553211111 100   0000    1 11              1222223334444445555


Q ss_pred             HHHHHhhHHHHHH-HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 019654          279 MVMKYADNIVKVY-STSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  329 (337)
Q Consensus       279 ~~~~~~~~~~~~~-~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~l  329 (337)
                      +.+..+|-....+ ++.++.+++++.|+++.+|..+...++|..+|+.|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            5666666555555 46888999999999998999999999999999999875

Many members are annotated as potential transmembrane proteins.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.17  E-value=0.0009  Score=59.14  Aligned_cols=265  Identities=13%  Similarity=0.151  Sum_probs=151.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHH
Q 019654           36 AIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  115 (337)
Q Consensus        36 ~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~al  115 (337)
                      ++..++-++.|++.+.+..   .-|+.++++.--+-+.   ++++++....  ..+    +    ..+++.+..-.+.|.
T Consensus         4 ~liaL~P~l~WGsip~v~~---k~GG~p~qQ~lGtT~G---ALifaiiv~~--~~~----p----~~T~~~~iv~~isG~   67 (288)
T COG4975           4 LLIALLPALGWGSIPLVAN---KFGGKPYQQTLGTTLG---ALIFAIIVFL--FVS----P----ELTLTIFIVGFISGA   67 (288)
T ss_pred             HHHHHHHHHHhcccceeee---ecCCChhHhhhhccHH---HHHHHHHHhe--eec----C----ccchhhHHHHHHhhh
Confidence            4566677899999887742   2234556655444444   3444443331  111    1    123455545566777


Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHhhhhcccccCCCCcc---c
Q 019654          116 LYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSNSDRV---L  187 (337)
Q Consensus       116 l~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw----~~l~l~~~Gv~lv~~~~~~~~~---~  187 (337)
                      +-......+|-|.+++..+.+.=+ ..++.+-+.+++++.++|--+..|.    .|+++...|+.+-..++..+.+   .
T Consensus        68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~  147 (288)
T COG4975          68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENP  147 (288)
T ss_pred             HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccCh
Confidence            788899999999999988866544 4678888999999999998888775    5777888888877665432211   1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHH
Q 019654          188 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  267 (337)
Q Consensus       188 ~~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  267 (337)
                      ++.-.|+...+.+.+.+-.+.+..+... -+.-+.+..|.+     |.++..+..-....+..        .+-.+|.-+
T Consensus       148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~-v~g~saiLPqAi-----GMv~~ali~~~~~~~~~--------~~K~t~~ni  213 (288)
T COG4975         148 SNLKKGIVILLISTLGYVGYVVLFQLFD-VDGLSAILPQAI-----GMVIGALILGFFKMEKR--------FNKYTWLNI  213 (288)
T ss_pred             HhhhhheeeeeeeccceeeeEeeecccc-ccchhhhhHHHH-----HHHHHHHHHhhcccccc--------hHHHHHHHH
Confidence            2344677777778887777766665432 111112222322     33333333221111111        122233322


Q ss_pred             H---HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHhhhc
Q 019654          268 L---NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAF----FLGSIVVSVSVYLH  330 (337)
Q Consensus       268 ~---~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~----~~G~~lV~~gv~ly  330 (337)
                      .   .-+++++.+.+.-...+....-..+....+++.+=|+++++|+=|..+    ++|..+++.|..+.
T Consensus       214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l  283 (288)
T COG4975         214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL  283 (288)
T ss_pred             hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence            2   234455443332222111111112234457888889999999988765    67888887776543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.98  E-value=0.025  Score=50.86  Aligned_cols=130  Identities=10%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  116 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all  116 (337)
                      ++.+.-+++.++..++.|+.-++.++-.+.+--.    ++.++.++...    ..-+   ...+++.+|+.+.+...|+.
T Consensus       194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~----~i~lV~s~I~~----~~ig---~~~lP~cgkdr~l~~~lGvf  262 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFS----LITLVVSLIGC----ASIG---AVQLPHCGKDRWLFVNLGVF  262 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHH----HHHHHHHHHHH----hhcc---ceecCccccceEEEEEehhh
Confidence            6667778888888899888743322222222212    23333333322    1111   12344566777778888888


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcc
Q 019654          117 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  177 (337)
Q Consensus       117 ~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv  177 (337)
                      .++...+.-.|+|.=-++-.++...+..++..+.-..++|+-.+.+.|.|.++.+...+.+
T Consensus       263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            8999999999999999999999999999999999999999999999998866554444433

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.49  E-value=0.079  Score=40.23  Aligned_cols=51  Identities=29%  Similarity=0.333  Sum_probs=26.3

Q ss_pred             HhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 019654          273 SGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV  323 (337)
Q Consensus       273 ~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV  323 (337)
                      .-.+.+.++|+.+-... ...+....+.+.++|+++|||++|+.+++|..+|
T Consensus        42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33455666776554433 2344567888999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.76  E-value=1.5  Score=41.49  Aligned_cols=75  Identities=9%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHH---Hh-hhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHhh
Q 019654          104 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG  173 (337)
Q Consensus       104 ~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~l---l~-~~~pl~talla~~~Lkekls------~~qw~~l~l~~~G  173 (337)
                      +|+.....+.|+....+|.+++.+-+.++.+....   +. |+..++.++-.. ++||+=+      +.-++++++.++|
T Consensus       257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g  335 (345)
T PRK13499        257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA  335 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence            46656668888999999999999998885443333   55 777777777666 6999887      4457777778888


Q ss_pred             hhcccc
Q 019654          174 CTTAQL  179 (337)
Q Consensus       174 v~lv~~  179 (337)
                      ..++..
T Consensus       336 ~~lig~  341 (345)
T PRK13499        336 ANIVGL  341 (345)
T ss_pred             HHHHhh
Confidence            777654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.68  E-value=2  Score=35.11  Aligned_cols=121  Identities=16%  Similarity=0.048  Sum_probs=72.5

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchhhhhhhHHHHHHHH
Q 019654           41 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVYPIPAVLYLV  119 (337)
Q Consensus        41 ~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~all~~~  119 (337)
                      ...++.+.|.-+.|...       +|....++....+++++..+..  ..++.  ...+.+ .+|    .+...|++...
T Consensus        12 ~i~~q~~~N~~L~~~~g-------s~~~as~i~~~~G~i~~~i~~~--~~~~~--~~~~~~~~p~----w~~lGG~lG~~   76 (138)
T PF04657_consen   12 LIALQAAFNGQLGKALG-------SPLVASFISFGVGFILLLIILL--ITGRP--SLASLSSVPW----WAYLGGLLGVF   76 (138)
T ss_pred             HHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHHHHH--Hhccc--ccchhccCCh----HHhccHHHHHH
Confidence            34455555554444432       2566666666666665544442  22221  111121 122    22335566666


Q ss_pred             HHHHHHHHHhcCChhHHHHHhhhHHHHHHHHH-HH----HhcCCCcHHHHHHHHHHHhhhhc
Q 019654          120 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLY-RI----ILKKKLSEIQWAAFILLCCGCTT  176 (337)
Q Consensus       120 ~~~l~f~al~~l~~~~~~ll~~~~pl~talla-~~----~Lkekls~~qw~~l~l~~~Gv~l  176 (337)
                      .-.+..+....+.++...++.-+.-+..+++- .+    .-|++++++|.+|+++..+|+.+
T Consensus        77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            66777778899999977777666555555544 33    46799999999999999999864

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.61  E-value=0.058  Score=47.61  Aligned_cols=67  Identities=13%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhc
Q 019654          110 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  176 (337)
Q Consensus       110 ~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~l  176 (337)
                      ....++...+...+.|.-..+..|-+.+++..+.-+||.+.++++++..++.+||+|..+.|.|...
T Consensus       244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            4455566677888889899999999999999999999999999999999999999999999999865

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.44  E-value=0.2  Score=45.21  Aligned_cols=65  Identities=22%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          271 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       271 a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      ++.+.+....+++.|+..-.......+++++++++++++.+++..||++..+...|+.+...++.
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~   92 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS   92 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence            34455566778888988888888889999999999999999999999999999999987765443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.32  E-value=5.7  Score=32.90  Aligned_cols=137  Identities=13%  Similarity=0.159  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHH
Q 019654          191 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNH  270 (337)
Q Consensus       191 ~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  270 (337)
                      .+..+..+++..+..+++...-++.|..++ +... ...-...|+..........+.....  ......+++.|..-   
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~s-pl~A-s~isf~vGt~~L~~l~l~~~~~~~~--a~~~~~pwW~~~GG---   76 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGS-PLLA-SLISFLVGTVLLLILLLIKQGHPGL--AAVASAPWWAWIGG---   76 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCC-hHHH-HHHHHHHHHHHHHHHHHHhcCCCch--hhccCCchHHHHcc---
Confidence            345677788888889999999888877653 3322 1111222333222222222221111  11122344454432   


Q ss_pred             HHHhHHHH---HHHHHhhHHH-HHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHhhhccCCC
Q 019654          271 ALSGIAVS---MVMKYADNIV-KVYSTSVAMLLTAVVSVF-LFG---FHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       271 a~~g~~~~---~~~~~~~~~~-~~~~~~~~~~~~~lls~~-lfg---e~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      .+|...+.   ......++.. ......-+.+.+.+++.+ ++|   .+++...++|+++++.|+++..+.+
T Consensus        77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            22222221   1112222222 222223345566666655 333   6699999999999999977665544

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.31  E-value=0.1  Score=48.14  Aligned_cols=122  Identities=14%  Similarity=0.205  Sum_probs=83.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHH
Q 019654          189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL  268 (337)
Q Consensus       189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  268 (337)
                      +...|.++.+.++++-+.+-+..+|-.++...     ..                ....+.  ..+++  ..+..|..++
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----~~----------------~ra~~g--g~~yl--~~~~Ww~G~l   72 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----SG----------------LRAGEG--GYGYL--KEPLWWAGML   72 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----hc----------------ccccCC--Ccchh--hhHHHHHHHH
Confidence            45678888888888777777777776655321     00                001100  01112  2345666677


Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh-hccCCCC
Q 019654          269 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY-LHSAGKL  335 (337)
Q Consensus       269 ~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~-ly~~~~~  335 (337)
                      ..++|-..-...+-+++++..++..+++.+.+++++..+++|++++.-.+|.++.+.|.. +....|+
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~  140 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK  140 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence            777776655555567899999999999999999999999999999999999999888864 4434433

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=91.90  E-value=0.85  Score=40.15  Aligned_cols=112  Identities=9%  Similarity=0.089  Sum_probs=81.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc--ccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhh
Q 019654           64 YSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS--TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN  141 (337)
Q Consensus        64 ~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~  141 (337)
                      +-....+|..+++.+.+.+.+-.  .-+ .+++. .+.  .....+..+.+.|++-+.-+.+.-+-..-++.++++++..
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~--~~e-dws~~-n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGA  258 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSF--LFE-DWSPG-NLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGA  258 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHH--Hhc-cCCcc-hhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHH
Confidence            44567789999987665444332  122 22221 111  1122344677778777777777778888899999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccc
Q 019654          142 LNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       142 ~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      ++-...++-..++++|+.+.....+++++++..++-..
T Consensus       259 LNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         259 LNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             hhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988776543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.33  E-value=1.2  Score=41.24  Aligned_cols=143  Identities=10%  Similarity=-0.042  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCcccccchhhhhhhHH
Q 019654           35 SAIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG-VTDDNRLSTTLDEVIVYPIP  113 (337)
Q Consensus        35 ~~~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~  113 (337)
                      +|.....-.+..+...+..|..-+.  .+......++...++.+.......+. .-+.. .........+..-+..+.+.
T Consensus       158 gY~w~~~n~~~~a~~~v~~kk~vd~--~~l~~~~lv~yNnl~~L~~l~~~~~~-~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  158 GYSWALANCLTTAAFVVYVKKSVDS--ANLNKFGLVFYNNLLSLPPLLILSFI-TGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc--ccccceeEEeehhHHHHHHHHHHHHH-hcchHHHHhhcccccchhHHHHHHHH
Confidence            4677777777777777777764432  23456667777777766544333211 11100 00000001112233456777


Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          114 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       114 all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      +++.+.-+.+.+...+..++.++++...-+...|.+-..++.+++.++....|+.++++|-++-+..
T Consensus       235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~  301 (314)
T KOG1444|consen  235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA  301 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence            7778889999999999999999999998888888888888889999999999999999998876653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=89.31  E-value=0.18  Score=44.98  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHH
Q 019654           71 FLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVL  150 (337)
Q Consensus        71 f~re~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~all~~~~~~l~f~al~~l~~~~~~ll~~~~pl~tall  150 (337)
                      ++-+.++++++...+.  .++ .  +++    ..|+.+.-.+||+.....|..+++|-+....++.--+.|+..+..++-
T Consensus       182 iLPqAiGMv~~ali~~--~~~-~--~~~----~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiG  252 (288)
T COG4975         182 ILPQAIGMVIGALILG--FFK-M--EKR----FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIG  252 (288)
T ss_pred             hhHHHHHHHHHHHHHh--hcc-c--ccc----hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecc
Confidence            3445566666655551  222 1  111    124445567899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHH
Q 019654          151 YRIILKKKLSEIQWAAFIL  169 (337)
Q Consensus       151 a~~~Lkekls~~qw~~l~l  169 (337)
                      ..++||||=+++++..+..
T Consensus       253 GIl~L~ekKtkkEm~~v~i  271 (288)
T COG4975         253 GILFLGEKKTKKEMVYVII  271 (288)
T ss_pred             eEEEEeccCchhhhhhhhh
Confidence            9999999999999876543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.56  E-value=13  Score=30.83  Aligned_cols=125  Identities=14%  Similarity=0.042  Sum_probs=65.4

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-cccchhhhhhhHHHHHHHH
Q 019654           41 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRL-STTLDEVIVYPIPAVLYLV  119 (337)
Q Consensus        41 ~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~re~~~l~i~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~all~~~  119 (337)
                      .+.++.+.|.=+.|+.+       +|....+.+...+..+...+..  . +++....... +.+|    ...+.|++...
T Consensus        16 ~l~~Q~~iN~qL~~~~~-------spl~As~isf~vGt~~L~~l~l--~-~~~~~~~a~~~~~pw----W~~~GG~lGa~   81 (150)
T COG3238          16 LLPLQAAINGRLARYLG-------SPLLASLISFLVGTVLLLILLL--I-KQGHPGLAAVASAPW----WAWIGGLLGAI   81 (150)
T ss_pred             hhhhHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHHHHHH--H-hcCCCchhhccCCch----HHHHccchhhh
Confidence            34556666655555543       2555666666655554444432  2 2221111111 1122    22333444333


Q ss_pred             HHHHHHHHHhcCChhHHH-HHhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHhhhhcccc
Q 019654          120 KNLLQYYIFAYVDAPGYQ-ILKNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQL  179 (337)
Q Consensus       120 ~~~l~f~al~~l~~~~~~-ll~~~~pl~talla~~~L----kekls~~qw~~l~l~~~Gv~lv~~  179 (337)
                      +-...-.....+.+++.. ++...+.+.-.++=.+=+    +++++..++.|+++..+|+.+++.
T Consensus        82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            333334456666666444 444555555554444333    389999999999999999766643

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=87.13  E-value=3.2  Score=37.87  Aligned_cols=48  Identities=10%  Similarity=0.166  Sum_probs=41.2

Q ss_pred             CChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccc
Q 019654          131 VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  178 (337)
Q Consensus       131 l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~  178 (337)
                      .++-+.++.....=.+..++|...++..+++++|+|..+.|.|.++..
T Consensus       266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA  313 (330)
T ss_pred             ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            444566677778888899999999999999999999999999998764

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=86.90  E-value=4.8  Score=36.45  Aligned_cols=127  Identities=22%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHHH
Q 019654          193 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL  272 (337)
Q Consensus       193 G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~  272 (337)
                      |.+..++|+++.+-..|=.||.-.. |  ++..| ..+.....+.+.+..+..+..         .+.++..+.-..-+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g-D--g~~fQ-w~~~~~i~~~g~~v~~~~~~p---------~f~p~amlgG~lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG-D--GFFFQ-WVMCSGIFLVGLVVNLILGFP---------PFYPWAMLGGALWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC-C--cHHHH-HHHHHHHHHHHHHHHHhcCCC---------cceeHHHhhhhhhhc
Confidence            4566778888887666666544322 1  34333 222222222222222221110         112222222222334


Q ss_pred             HhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH-HcCCcc-----hHHHHHHHHHHHHHhhhccC
Q 019654          273 SGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVF-LFGFHL-----SLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       273 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~lls~~-lfge~~-----t~~~~~G~~lV~~gv~ly~~  332 (337)
                      ++.+...++|..+ ++-..+-+.+..+.++..|-+ +||++.     ++.-.+|+++++.|..+|..
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f  134 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF  134 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence            5555555555544 222334455566666666644 676543     34568999999999887763

The region concerned is approximately 280 residues long.

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=86.64  E-value=1.5  Score=33.85  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhc
Q 019654          293 TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  330 (337)
Q Consensus       293 ~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly  330 (337)
                      ..++..+-+..+++.++|++++.++.|.+++++++++.
T Consensus        69 EvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   69 EVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            34445555677888999999999999999999998754

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=85.06  E-value=14  Score=34.81  Aligned_cols=132  Identities=14%  Similarity=0.240  Sum_probs=71.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHH--HHHHHHHHHHHH---HHhcchhhhhccccccchH-H
Q 019654          189 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL--YVFGMAFNAVAI---VIQDFDAVMNKGFFHGYSF-I  262 (337)
Q Consensus       189 ~~~~G~~l~l~a~~~~a~~~v~~e~~~k~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~  262 (337)
                      ....|+++..+++++++...+=.||. |+-+    | ++.|+  .+++.++.....   ..++..++-     ...+. .
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----W-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~-----~~~~~~~   72 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS----W-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIY-----SATPAST   72 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH-----HhCChhH
Confidence            35689999999999999877777654 3322    2 22332  233433333222   122322211     11111 1


Q ss_pred             HHHHH---HHHHHHhHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHhhhcc
Q 019654          263 TVLMI---LNHALSGIAVSMVMKYADNIV-KVYSTSVAMLLTAVVSVFLFG-------FHLSLAFFLGSIVVSVSVYLHS  331 (337)
Q Consensus       263 ~~~~i---~~~a~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~lls~~lfg-------e~~t~~~~~G~~lV~~gv~ly~  331 (337)
                      .+...   +.-+++++.....+||.+-.. .+++.-+..++.+++--++.|       ++-....++|.++++.|+.+..
T Consensus        73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g  152 (344)
T PF06379_consen   73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG  152 (344)
T ss_pred             HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence            11112   234567777778888875332 334444455666666544433       2223467899999999987654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=83.34  E-value=29  Score=33.17  Aligned_cols=140  Identities=13%  Similarity=0.076  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhHHH
Q 019654           37 IVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLV--ETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  114 (337)
Q Consensus        37 ~~~~~l~~~~~~~~i~~k~~~~~~~~~~~~~~~vf~r--e~~~l~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  114 (337)
                      ++.++-++.++.-.++.|.--.+++...+.-  .|+.  .++.+++..|.+...-+- + .++-.+++.. ++....+.+
T Consensus       250 llaL~sA~~YavY~vllk~~~~~eg~rvdi~--lffGfvGLfnllllwP~l~iL~~~-~-~e~F~lP~~~-q~~~vv~~~  324 (416)
T KOG2765|consen  250 LLALLSALLYAVYTVLLKRKIGDEGERVDIQ--LFFGFVGLFNLLLLWPPLIILDFF-G-EERFELPSST-QFSLVVFNN  324 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccHH--HHHHHHHHHHHHHHhHHHHHHHHh-c-cCcccCCCCc-eeEeeeHhh
Confidence            4445556777777777765333322233322  2333  234455555433210111 1 1111122222 222233333


Q ss_pred             HH-HHHHHHHHHHHHhcCChhHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhcccccC
Q 019654          115 VL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  181 (337)
Q Consensus       115 ll-~~~~~~l~f~al~~l~~~~~~ll~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~~  181 (337)
                      +. .+++.++.-.|.-.+++-+.++-...++...++.=.++-++++++.+++|-+..|.|.+++..+.
T Consensus       325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            33 46788999999999999999999999988888877888899999999999999999998886643

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.82  E-value=7  Score=29.71  Aligned_cols=40  Identities=15%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccC
Q 019654          293 TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  332 (337)
Q Consensus       293 ~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~  332 (337)
                      ..++..+-...|++.++|++.+.++.|..++.+|+++.-+
T Consensus        76 EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr  115 (116)
T COG3169          76 EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR  115 (116)
T ss_pred             HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence            3344455667889999999999999999999999986543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.63
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.45
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.16
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.15

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.63  E-value=1.8e-07  Score=72.67  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          112 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       112 i~all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      ...+++.++..+...+++++|.+.+..+ ..+.|+.+++++++++||++++.||+|+.+..+|+.++...
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3345578888999999999999999888 89999999999999999999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.45  E-value=2.3e-07  Score=74.77  Aligned_cols=67  Identities=16%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhhhccccc
Q 019654          114 AVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  180 (337)
Q Consensus       114 all~~~~~~l~f~al~~l~~~~~~ll-~~~~pl~talla~~~Lkekls~~qw~~l~l~~~Gv~lv~~~  180 (337)
                      .+++.++..+...+++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35578889999999999999988887 89999999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.16  E-value=1.3e-05  Score=62.00  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             HHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCCC
Q 019654          269 NHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  335 (337)
Q Consensus       269 ~~a~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~~  335 (337)
                      ..++...+..+.+|+.+....... ..+.+++++++|+++|||++|+.+++|.++|+.|+.+.+..++
T Consensus        39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~~  106 (110)
T 3b5d_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR  106 (110)
T ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            334445566778888877776665 7899999999999999999999999999999999988776543

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.15  E-value=2.3e-06  Score=68.92  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=46.1

Q ss_pred             HHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhccCCC
Q 019654          267 ILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  334 (337)
Q Consensus       267 i~~~a~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~lls~~lfge~~t~~~~~G~~lV~~gv~ly~~~~  334 (337)
                      ++..++...+..+.+|+.+....... +.+.|++++++|+++|||++|+.+++|+++|+.|+++.+..+
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34445555667778888887777666 899999999999999999999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00