Citrus Sinensis ID: 019663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRKA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHccccccccEEEcccccHHHHHHHHccc
Coil and Loop (DISEMBL)
messasgralphhrepfdwltrpplnlittTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSrlchiprlkdqwcenafrfngvnffrftndafasslsffngggtrknsghegtshldtartnlfIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYslnsigptmekicgprrylgVYFSSAIASSAmsyrfcnspavgasgaIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLlgpalkyeftsddgfrifsdrapifhlidWKRKA
Flexible Loop (DISEMBL)
messasgralphhrepfdwltrpPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDrapifhlidwkrka
Low Complexity Region (SEG)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKhslsvslsrrllhhhplharrllhssVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRKA
Disordered region (IsUnstruct)
****************FDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGG*************LDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDW****
Disordered Region (DISOPRED)
*************REPFDWLTRPP***************LSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFA*****************************LFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK*
Disordered Region (DISEMBL)
***********HHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGT**********HLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRKA
Disordered Region (DISPRO)
*********LPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNG******************RTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
P54493	507	Rhomboid protease GluP OS	yes	no	0.424	0.282	0.393	2e-20
P46116	281	Rhomboid protease AarA OS	yes	no	0.525	0.629	0.315	2e-13
Q695U0	293	Rhomboid-like protease 1	N/A	no	0.498	0.573	0.338	6e-13
P96617	199	Putative rhomboid proteas	no	no	0.397	0.673	0.345	2e-12
Q695T9	283	Rhomboid-like protease 2	N/A	no	0.477	0.568	0.327	9e-12
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.545	0.699	0.277	7e-11
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.415	0.163	0.323	6e-09
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.412	0.162	0.321	1e-08
Q499S9	856	Inactive rhomboid protein	yes	no	0.412	0.162	0.314	2e-08
Q96CC6	855	Inactive rhomboid protein	yes	no	0.412	0.162	0.307	3e-08

>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)

Query: 153 DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLG 212
           + L+ +GAK NSLI +G++WRL T   LH  IAHL  N  +L S+G  +E++ G  R+L 
Sbjct: 204 ETLVAFGAKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLL 263

Query: 213 VYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVI 272
           +Y ++ I  S  S+ F   P+ GASGAIFG +G+     + +R +    +    ++  +I
Sbjct: 264 IYLAAGITGSIASFVFSPYPSAGASGAIFGCLGALLYVALSNRKMF--LRTIGTNIIVII 321

Query: 273 IFNMAIGLLIKGIDNWGHVGGLLGG 297
           I N+  G  +  IDN GH+GGL+GG
Sbjct: 322 IINLGFGFAVSNIDNSGHIGGLIGG 346

Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5

>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 32/209 (15%)

Query: 129 IGRQWTNILLAVNVLVYIAQFAT-----QDKLLLWGAKINSLIDKGQFWRLATSAFLHAN 183
           I    T +LL + V  Y   FA+     +  L+L+GA I  L   G +WR   S  LH+N
Sbjct: 21  IALTLTLVLLNIAVYFYQIVFASPLDSRESNLILFGANIYQLSLTGDWWRYPISMMLHSN 80

Query: 184 IAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS-----YRFCNSP------ 232
             HL  NC +L  IG   E+  G  + L +Y  S I ++  S     Y   NS       
Sbjct: 81  GTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQYYEISNSDLWTDST 140

Query: 233 -----AVGASGAIFGLVGSFAVFIMR--------HRNILGGGKEELQHLAKVIIFNMAIG 279
                 VGASGAI G+  +  +++++        H  I    K +L +L  +I   +  G
Sbjct: 141 VYITIGVGASGAIMGIAAASVIYLIKVVINKPNPHPVIQRRQKYQLYNLIAMIALTLING 200

Query: 280 LLIKGIDNWGHVGGLLGGAAIS--WLLGP 306
           L   G+DN  H+GG + GA IS  ++L P
Sbjct: 201 LQ-SGVDNAAHIGGAIIGALISIAYILVP 228

Rhomboid serine protease that catalyzes intramembrane proteolysis. Mediates quorum-sensing and the subsequent regulation of target genes via activation of the Tat protein export system. Catalyzes the proteolytic activation of tatA by removal of its N-terminal extension.

Providencia stuartii (taxid: 588)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 12/180 (6%)

Query: 132 QWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNC 191
            W   ++ V +   +      + L+ +GA    LI +GQ WRL    FLHAN  H+  N 
Sbjct: 70  DWIFYIVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNV 129

Query: 192 YSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSPAVGASGAIFGLVG---- 245
           +    +G T+E+  G  ++ G+YF+SAI  + +S    FCNS  VGAS A FGL+G    
Sbjct: 130 FFQLRMGFTIERRYGLLKFTGLYFASAIYGNLLSATAFFCNSLKVGASTAGFGLIGIQIC 189

Query: 246 --SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
             +     MRHR+ +         L  +++F +  G     ID  GH+GGLL G +I  L
Sbjct: 190 EMALTWHRMRHRDRMLTNMVSFVLLMVLLMFTLNGG----SIDQMGHLGGLLCGFSIGML 245

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors. Has no detectable activity towards MIC2.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 166 IDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS 225
           +  G++WRL T   LHA   HL+ N  S+    P +E++ G  R+L VY  S I  +  +
Sbjct: 53  VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112

Query: 226 YRFCNSPA----VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
           Y     P     VGASGAIFGL G + +F++  RN L  G+E  + +  ++ F + +  +
Sbjct: 113 Y--VTEPLDYVHVGASGAIFGLFGVY-LFMVLFRNEL-IGQEHSKMIITLLAFAVLMSFI 168

Query: 282 IKGIDNWGHVGGLLGGAAISWL 303
              I+   H+ GL GG  +S+L
Sbjct: 169 NSNINMMAHLFGLCGGFLLSFL 190

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 87/180 (48%), Gaps = 19/180 (10%)

Query: 140 VNVLVYIAQFA-----------TQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
           V + VYIA  A           T   L+++GA I  LI  G+ WRL    FLH N+ H++
Sbjct: 68  VQIAVYIASLAAGLAPNEILAPTPQTLVMFGANIPELIRVGEIWRLICPLFLHLNLFHIL 127

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMS--YRFCNSPAVGASGAIFGLVGS 246
           +N +    IG TME+  G +  L VYF   + ++ +S    FC     GAS A+F L+G 
Sbjct: 128 MNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFCGQMKAGASTAVFALIG- 186

Query: 247 FAVFIMRHRNILGGGKEELQHLAKVII--FNMAIGLLIKGIDNWGHVGGL-LGGAAISWL 303
             V +     I    ++    +  V I  F + +      +D+ GH+GGL +G AA  WL
Sbjct: 187 --VQLAELALIWHAIQDRNSAIISVCICLFFVFVSSFGSHMDSVGHIGGLVMGFAAGIWL 244

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 18/202 (8%)

Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNV---LVYIAQFA-------TQDKLLLWGAKIN 163
           + G   L + +  +F G  W   ++ + V   ++YI            +  L+L GA   
Sbjct: 16  NSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLSRSYEPNERTLMLLGAAYA 75

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
                 Q WR+ T  FLHA I HL++N   +  I   +E+  G +++L  YF SAI  + 
Sbjct: 76  PAFSNFQLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNL 135

Query: 224 MSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
           +S      + +VGAS A FG++G  A  +     +     EEL+ +  + I  +A+ +  
Sbjct: 136 LSMLMQPWALSVGASTAGFGIIGGMAAEV---SVVWCKLSEELKRIYSMDICILAVLIYF 192

Query: 283 ----KGIDNWGHVGGLLGGAAI 300
               + +D +GH+GG L G A+
Sbjct: 193 LSFGRTVDTFGHLGGFLAGVAL 214

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 2/142 (1%)

Query: 170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC 229
           QF+RL  S FLHA I H +V+     +I   +EK+ G  R   +Y  S I  +  S  F 
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 230 NSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNW 288
              A VG +G+ FG++    V +++   IL         L  V++F  A GLL   IDN+
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLL-PWIDNF 772

Query: 289 GHVGGLLGGAAISWLLGPALKY 310
            H+ G + G  +S+   P + +
Sbjct: 773 AHISGFISGFFLSFAFLPYISF 794

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S I  +  S  F
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLR-DLEKLAGWHRIAIIYLLSGITGNLASAIF 711

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F  A GLL   IDN
Sbjct: 712 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL-PWIDN 770

Query: 288 WGHVGGLLGGAAISWLLGPALKY 310
           + H+ G + G  +S+   P + +
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISF 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S +  +  S  F
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLR-DLEKLAGWHRIAIIYLLSGVTGNLASAIF 711

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F  A GLL   IDN
Sbjct: 712 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL-PWIDN 770

Query: 288 WGHVGGLLGGAAISWLLGPALKY 310
           + H+ G + G  +S+   P + +
Sbjct: 771 FAHISGFVSGLFLSFAFLPYISF 793

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)

Query: 170 QFWRLATSAFLHANIAHLMVN-CYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF 228
           QF+RL  S FLHA I H +V+ C+ +  +   +EK+ G  R   +Y  S +  +  S  F
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLR-DLEKLAGWHRIAIIYLLSGVTGNLASAIF 710

Query: 229 CNSPA-VGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN 287
               A VG +G+ FG++    V + +   IL         L  V++F    GLL   IDN
Sbjct: 711 LPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLL-PWIDN 769

Query: 288 WGHVGGLLGGAAISWLLGPALKY 310
           + H+ G + G  +S+   P + +
Sbjct: 770 FAHISGFISGLFLSFAFLPYISF 792

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
255581209	340	KOM, putative [Ricinus communis] gi|2235	0.937	0.929	0.606	1e-104
225448034	330	PREDICTED: rhomboid protease gluP [Vitis	0.928	0.948	0.609	1e-101
224073304	325	predicted protein [Populus trichocarpa]	0.934	0.969	0.594	1e-100
118483595	325	unknown [Populus trichocarpa]	0.934	0.969	0.591	1e-99
363807582	342	uncharacterized protein LOC100805315 [Gl	0.919	0.906	0.586	3e-88
334182855	336	RHOMBOID-like protein 10 [Arabidopsis th	0.910	0.913	0.530	6e-88
357452411	327	Rhomboid protease gluP [Medicago truncat	0.890	0.917	0.572	6e-86
30689150	343	RHOMBOID-like protein 10 [Arabidopsis th	0.910	0.895	0.515	3e-85
388500820	327	unknown [Medicago truncatula]	0.890	0.917	0.569	5e-85
11761473	369	unknown protein [Arabidopsis thaliana]	0.821	0.750	0.534	1e-82

>gi|255581209|ref|XP_002531417.1| KOM, putative [Ricinus communis] gi|223528967|gb|EEF30959.1| KOM, putative [Ricinus communis]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/328 (60%), Positives = 245/328 (74%), Gaps = 12/328 (3%)

Query: 13  HREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRL 72
           H +P  W+   P+    TT  H ++ + S RL          LLHSS KKLS LCH+PRL
Sbjct: 19  HHQPIWWVQFQPVGPTPTTPFHLIATATSLRL--------SFLLHSSFKKLSHLCHVPRL 70

Query: 73  KDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEGTSHLDTARTNLF 128
           KD WC  A +F G++F + +ND  AS+    LSFFNGG T K  G +G  + + +++N F
Sbjct: 71  KDIWCRKASQFKGIDFLQISNDVLASTTSHCLSFFNGGETGKGHGIQGAPYSEASKSNSF 130

Query: 129 IGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLM 188
            GR+WTNILLA+N+LV+ AQFATQ KLL WGAK+NSLIDKGQFWRL TS+FLHANI HLM
Sbjct: 131 NGRKWTNILLAINILVFAAQFATQGKLLFWGAKVNSLIDKGQFWRLVTSSFLHANIGHLM 190

Query: 189 VNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFA 248
           VN YSLNSIGPT+E + GPRR+L VYF+SAIASSA SY FC +PAVGASGAIFGLVGS A
Sbjct: 191 VNSYSLNSIGPTIENLSGPRRFLAVYFTSAIASSATSYWFCKAPAVGASGAIFGLVGSLA 250

Query: 249 VFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
           VF++RHR ++ GGKEELQH+A+VI+ NM IG+L +GIDNWGH+GGLLGG A SW +GPA 
Sbjct: 251 VFVIRHRGMIRGGKEELQHIAQVILLNMVIGILSRGIDNWGHLGGLLGGVATSWFVGPAW 310

Query: 309 KYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
           KYE  ++DG RIF DR PI +L + K +
Sbjct: 311 KYEALANDGRRIFVDRPPIKYLANIKNR 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448034|ref|XP_002273377.1| PREDICTED: rhomboid protease gluP [Vitis vinifera] gi|298204568|emb|CBI23843.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/323 (60%), Positives = 241/323 (74%), Gaps = 10/323 (3%)

Query: 21  TRPPLNLITTTAKHSLSVSLSRRL---LHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWC 77
           +R PL+ +  T  H ++ + S RL   +H   +H    L SS K+L+ L H+P LK+ W 
Sbjct: 10  SRFPLSKVGPTPAHLITTAASLRLGHFIHRQYIHLGFFLRSSFKRLAHLAHVPGLKNIWF 69

Query: 78  ENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKNSGHEGTSHLDTARTNLFIGRQW 133
             A +F G++F    +D+F+++ S    FF G  TRK S  EG S+ +  R N   GRQW
Sbjct: 70  GKAIQFQGISF---PSDSFSATCSSYLYFFGGEETRKGSRDEGMSYSEAPRRNSLRGRQW 126

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYS 193
           TNIL+A+NVLV+I Q ATQ KLLLWGAKINSLIDKGQFWRLATS+FLHANI HLMVNC+S
Sbjct: 127 TNILIAINVLVFIGQAATQGKLLLWGAKINSLIDKGQFWRLATSSFLHANIGHLMVNCFS 186

Query: 194 LNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMR 253
           LNS+GPT+E + GPRRYL VYF+SAIASSAMSY  C  PAVGASGAIFGLVGS AVF+MR
Sbjct: 187 LNSVGPTVENLSGPRRYLAVYFTSAIASSAMSYWLCKGPAVGASGAIFGLVGSVAVFMMR 246

Query: 254 HRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFT 313
           HR ++G  KE LQH+A+VI+ NM IG L KGIDNWGH+GGLLGG   SWLLGPA KYE  
Sbjct: 247 HRGLVGDSKESLQHIARVIVLNMVIGCLSKGIDNWGHLGGLLGGLVTSWLLGPAWKYESL 306

Query: 314 SDDGFRIFSDRAPIFHLIDWKRK 336
           S+DG R+F+DRAPIFHL++ +RK
Sbjct: 307 SNDGRRVFADRAPIFHLVNRRRK 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073304|ref|XP_002304070.1| predicted protein [Populus trichocarpa] gi|222841502|gb|EEE79049.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/340 (59%), Positives = 244/340 (71%), Gaps = 25/340 (7%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220

Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
           SGAIFGLVGS AVF++RHR ++GGGKE+LQ++AKVI  NM IGLL KGIDNWGH+GGLLG
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGGKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLG 280

Query: 297 GAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
           G A SW +GPA +Y   S DG R+F D+API +L + K +
Sbjct: 281 GVATSWFVGPAWQYGPQSHDGRRVFVDKAPIRYLTNRKTE 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483595|gb|ABK93694.1| unknown [Populus trichocarpa]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/340 (59%), Positives = 243/340 (71%), Gaps = 25/340 (7%)

Query: 1   MESSASGRALPHHREPFDWLTRPPLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSV 60
           M SS S    P  R P       PLNLITT A                 L    L+HSS 
Sbjct: 2   MGSSLSASPQPLWRVPIQ-----PLNLITTVAS----------------LRFGFLVHSSF 40

Query: 61  KKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASS----LSFFNGGGTRKNSGHEG 116
           K +S L H+PRLKD W E A +  G++  +F+ND FAS+    L FFNGGGTRK   +EG
Sbjct: 41  KNISHLYHVPRLKDVWHEKASQLQGIDVLQFSNDVFASTCSSCLCFFNGGGTRKGFRNEG 100

Query: 117 TSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLAT 176
           + +L+T+  + F GRQWTNILLA+N+LVY AQ AT+ KLL WGAK+NSLIDKGQFWRLAT
Sbjct: 101 SPNLETSGRSSFNGRQWTNILLAINILVYFAQIATRGKLLFWGAKVNSLIDKGQFWRLAT 160

Query: 177 SAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGA 236
           S+ LHANI HLMVNCYSLNS+GPT+E + GPRR++ VY +SAIASSAMSY FC +PAVGA
Sbjct: 161 SSVLHANIGHLMVNCYSLNSVGPTIENLSGPRRFIAVYLTSAIASSAMSYWFCRAPAVGA 220

Query: 237 SGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLG 296
           SGAIFGLVGS AVF++RHR ++GG KE+LQ++AKVI  NM IGLL KGIDNWGH+GGLLG
Sbjct: 221 SGAIFGLVGSLAVFVIRHRRMIGGAKEDLQNIAKVIFLNMMIGLLTKGIDNWGHLGGLLG 280

Query: 297 GAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
           G A SW +GPA +Y   S DG R+F D+API +L + K +
Sbjct: 281 GVATSWFVGPAWQYGTQSHDGRRVFVDKAPIRYLTNRKTE 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807582|ref|NP_001242663.1| uncharacterized protein LOC100805315 [Glycine max] gi|255640088|gb|ACU20335.1| unknown [Glycine max]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 186/317 (58%), Positives = 220/317 (69%), Gaps = 7/317 (2%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL+LI T A       L RR  HH  L    LLHS  KKL+ L HI RL D+WC+  F+ 
Sbjct: 22  PLDLIATAASLHFGHLLRRRATHH--LRLGVLLHSCFKKLAPLTHIFRLNDKWCQRCFQL 79

Query: 84  NGVNFFRFTNDAFASSLSFFNGGGTRKNSG-----HEGTSHLDTARTNLFIGRQWTNILL 138
           NG+N+ + +     SS S           G       G S+   +  + F GR+WT ILL
Sbjct: 80  NGLNYLQLSTGDLTSSWSTSFSFFNGGGDGGRRYGKAGMSNSKMSGKDPFNGRKWTEILL 139

Query: 139 AVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIG 198
           A NVL YIAQ ATQ KLLLWGAKINSLIDKGQ WRLATS+FLHANI HL+VNCYSLNS+G
Sbjct: 140 AANVLFYIAQLATQGKLLLWGAKINSLIDKGQLWRLATSSFLHANIGHLLVNCYSLNSVG 199

Query: 199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNIL 258
           PT+E   GPRR+L VYF SAIASSA SY FC  PAVGASGAIFGLVGS AVF++RH++++
Sbjct: 200 PTVESFSGPRRFLAVYFISAIASSATSYWFCRMPAVGASGAIFGLVGSVAVFVLRHKDLV 259

Query: 259 GGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGF 318
           GGGK +LQH+A+VI  NM IGLL  GIDNWGH+GGL+GG A SW +GPA K+E TS DG 
Sbjct: 260 GGGKRDLQHIAQVIALNMVIGLLSTGIDNWGHLGGLVGGVAASWFIGPAWKHESTSSDGR 319

Query: 319 RIFSDRAPIFHLIDWKR 335
           R+F D AP++ L   KR
Sbjct: 320 RLFIDTAPMYKLFKIKR 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182855|ref|NP_001185093.1| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192482|gb|AEE30603.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 167/315 (53%), Positives = 220/315 (69%), Gaps = 8/315 (2%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG 261
           E + GP+R+L VY +SA+ASSAMSY F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG
Sbjct: 198 ESLGGPKRFLAVYLTSAVASSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGG 257

Query: 262 KEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIF 321
            E+L  +A++I  NMA+GL+ + IDNWGH+GGLLGG A++WLLGP  KYE+T+ DG R+F
Sbjct: 258 NEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVF 317

Query: 322 SDRAPIFHLIDWKRK 336
            D API  L+ W+ +
Sbjct: 318 MDSAPIPLLLRWRNE 332

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452411|ref|XP_003596482.1| Rhomboid protease gluP [Medicago truncatula] gi|355485530|gb|AES66733.1| Rhomboid protease gluP [Medicago truncatula]

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 181/316 (57%), Positives = 231/316 (73%), Gaps = 16/316 (5%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D    A ++S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
           T+E   GPRRYL +YF+S+IAS+AMSYRFC  PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245

Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
           GGK++LQH+A+VI  N+AIGL   GIDNWGH+GGL+GG A SWL+GPA K+E TS DG R
Sbjct: 246 GGKKDLQHIAQVIALNLAIGLSSTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRR 305

Query: 320 IFSDRAPIFHLIDWKR 335
           +F D AP+++L    R
Sbjct: 306 LFIDSAPMYNLFKITR 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689150|ref|NP_173900.2| RHOMBOID-like protein 10 [Arabidopsis thaliana] gi|332192481|gb|AEE30602.1| RHOMBOID-like protein 10 [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/322 (51%), Positives = 219/322 (68%), Gaps = 15/322 (4%)

Query: 30  TTAKHSLSVSLSRRLLHHHPLHARRLLH--SSVKKLSRLCHIPRLKDQWCENAFRFNGVN 87
           +TA    + + S    HH   H R   H  SS+KKL       R+K    +  F FNG N
Sbjct: 18  STAFRGFATAASVHACHHVSRHLRLDFHLRSSLKKLQHFSDDARMKFARYQRVFVFNGAN 77

Query: 88  FFRFTNDAFASSLS----FFNGGGTRKN--SGHEGTSHLDTARTNLFIGRQWTNILLAVN 141
           F +   D   S  S    FFNGG +R N   G EG+S+ +T++ N   GR+WTN+LLA+N
Sbjct: 78  FLKSRVDIRLSQSSPFVCFFNGGESRLNPRGGEEGSSNPETSKRNTVNGRRWTNVLLAIN 137

Query: 142 VLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTM 201
           V++YIAQ A+  K+L WGAKINSLI++GQ WRLAT++ LHAN  HLM+NCYSLNSIGPT 
Sbjct: 138 VIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLNSIGPTA 197

Query: 202 EKICGPRRYLGVYFSSAIAS-------SAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRH 254
           E + GP+R+L VY +SA+A        SAMSY F  +P+VGASGAIFGLVGS AVF++RH
Sbjct: 198 ESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSVGASGAIFGLVGSVAVFVIRH 257

Query: 255 RNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTS 314
           + ++ GG E+L  +A++I  NMA+GL+ + IDNWGH+GGLLGG A++WLLGP  KYE+T+
Sbjct: 258 KQMVRGGNEDLMQIAQIIALNMAMGLMSRRIDNWGHIGGLLGGTAMTWLLGPQWKYEYTT 317

Query: 315 DDGFRIFSDRAPIFHLIDWKRK 336
            DG R+F D API  L+ W+ +
Sbjct: 318 RDGRRVFMDSAPIPLLLRWRNE 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500820|gb|AFK38476.1| unknown [Medicago truncatula]

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 180/316 (56%), Positives = 230/316 (72%), Gaps = 16/316 (5%)

Query: 24  PLNLITTTAKHSLSVSLSRRLLHHHPLHARRLLHSSVKKLSRLCHIPRLKDQWCENAFRF 83
           PL++I T A    S  +S RL  H       LL S  +KL+    + RLKD+WC+   + 
Sbjct: 18  PLDIIATAASFHFSHRVSHRLRLHF------LLRSCFQKLA---PVFRLKDKWCQKYLQL 68

Query: 84  NGVNFFRFTND----AFASSLSFFNGGGTRKNSGHEGTSHLDTARTNLFIGRQWTNILLA 139
            G+N+ + ++D    A ++S SFFNGG    +SG+  +     +R N F GR+WTNILLA
Sbjct: 69  KGLNYLQLSSDGLTSACSTSFSFFNGGRPEASSGNSDS---KMSRKNPFNGRKWTNILLA 125

Query: 140 VNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP 199
            NVL Y+AQ ATQ KLL WGAK+NSLIDKGQ WRL TS+FLHANI HLM+NCYSLNS+GP
Sbjct: 126 ANVLFYVAQLATQGKLLSWGAKVNSLIDKGQVWRLVTSSFLHANIGHLMINCYSLNSVGP 185

Query: 200 TMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILG 259
           T+E   GPRRYL +YF+S+IAS+AMSYRFC  PAVGASGAIFGLVGS AVF++RH++++G
Sbjct: 186 TVESFSGPRRYLAIYFASSIASAAMSYRFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVG 245

Query: 260 GGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFR 319
           GG ++LQH+A+VI  N+AIGL   GIDNWGH+GGL+GG A SWL+GPA K+E TS DG R
Sbjct: 246 GGIKDLQHIAQVIALNLAIGLSPTGIDNWGHLGGLIGGIAASWLIGPAWKHESTSLDGRR 305

Query: 320 IFSDRAPIFHLIDWKR 335
           +F D AP+++L    R
Sbjct: 306 LFIDSAPMYNLFKITR 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11761473|gb|AAG40087.1|AC079374_1 unknown protein [Arabidopsis thaliana]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/290 (53%), Positives = 206/290 (71%), Gaps = 13/290 (4%)

Query: 60  VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
           ++KL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct: 76  LQKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 135

Query: 114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
            EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct: 136 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 195

Query: 174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
           LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A        SAMSY
Sbjct: 196 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 255

Query: 227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
            F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L  +A++I  NMA+GL+ + ID
Sbjct: 256 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 315

Query: 287 NWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
           NWGH+GGLLGG A++WLLGP  KYE+T+ DG R+F D API  L+ W+ +
Sbjct: 316 NWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDSAPIPLLLRWRNE 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2032940	343	RBL10 "RHOMBOID-like protein 1	0.821	0.807	0.537	3.3e-79
UNIPROTKB|Q74DX7	279	GSU1188 "Rhomboid-related memb	0.483	0.584	0.329	1.6e-21
TIGR_CMR|GSU_1188	279	GSU_1188 "rhomboid family prot	0.483	0.584	0.329	1.6e-21
UNIPROTKB|Q8EI50	528	SO_1000 "Rhomboid protease" [S	0.525	0.335	0.347	4.5e-19
TIGR_CMR|SO_1000	528	SO_1000 "rhomboid family prote	0.525	0.335	0.347	4.5e-19
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.456	0.314	0.341	2.7e-18
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.418	0.407	0.384	6.1e-17
TAIR|locus:2159808	434	AT5G38510 [Arabidopsis thalian	0.451	0.350	0.312	3.4e-15
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.412	0.438	0.354	5.4e-15
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.483	0.464	0.303	5.4e-15

TAIR|locus:2032940 RBL10 "RHOMBOID-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 156/290 (53%), Positives = 206/290 (71%)

Query:    60 VKKLSRLCHIPRLKDQWCENAFRFNGVNFFRFTNDAFASSLS----FFNGGGTRKN--SG 113
             +KKL       R+K    +  F FNG NF +   D   S  S    FFNGG +R N   G
Sbjct:    50 LKKLQHFSDDARMKFARYQRVFVFNGANFLKSRVDIRLSQSSPFVCFFNGGESRLNPRGG 109

Query:   114 HEGTSHLDTARTNLFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWR 173
              EG+S+ +T++ N   GR+WTN+LLA+NV++YIAQ A+  K+L WGAKINSLI++GQ WR
Sbjct:   110 EEGSSNPETSKRNTVNGRRWTNVLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWR 169

Query:   174 LATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIAS-------SAMSY 226
             LAT++ LHAN  HLM+NCYSLNSIGPT E + GP+R+L VY +SA+A        SAMSY
Sbjct:   170 LATASVLHANPMHLMINCYSLNSIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSY 229

Query:   227 RFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID 286
              F  +P+VGASGAIFGLVGS AVF++RH+ ++ GG E+L  +A++I  NMA+GL+ + ID
Sbjct:   230 WFNKAPSVGASGAIFGLVGSVAVFVIRHKQMVRGGNEDLMQIAQIIALNMAMGLMSRRID 289

Query:   287 NWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIFSDRAPIFHLIDWKRK 336
             NWGH+GGLLGG A++WLLGP  KYE+T+ DG R+F D API  L+ W+ +
Sbjct:   290 NWGHIGGLLGGTAMTWLLGPQWKYEYTTRDGRRVFMDSAPIPLLLRWRNE 339

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0031969 "chloroplast membrane" evidence=IDA

UNIPROTKB|Q74DX7 GSU1188 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 220 (82.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 57/173 (32%), Positives = 87/173 (50%)

Query:   152 QDKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
             ++ LLL GA     ID+ G+FW L ++ +LH  + H+  N  +L  I P + +  G  R 
Sbjct:    88 RNSLLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRM 147

Query:   211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHL 268
               +Y    +A   +SY       +GAS AI  L+GS   +      + G    KE    +
Sbjct:   148 FSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWV 207

Query:   269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIF 321
               + +F    GL++ GIDNWGH GG+LGG  ++++LG     E  SD+ F  F
Sbjct:   208 VGLFLF----GLIVPGIDNWGHGGGILGGIIMAFILGYR---ERRSDNLFHTF 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1188 GSU_1188 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 220 (82.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 57/173 (32%), Positives = 87/173 (50%)

Query:   152 QDKLLLWGAKINSLIDK-GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRY 210
             ++ LLL GA     ID+ G+FW L ++ +LH  + H+  N  +L  I P + +  G  R 
Sbjct:    88 RNSLLLLGATGVVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRM 147

Query:   211 LGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGG--KEELQHL 268
               +Y    +A   +SY       +GAS AI  L+GS   +      + G    KE    +
Sbjct:   148 FSIYTLGGVAGYVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWV 207

Query:   269 AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDGFRIF 321
               + +F    GL++ GIDNWGH GG+LGG  ++++LG     E  SD+ F  F
Sbjct:   208 VGLFLF----GLIVPGIDNWGHGGGILGGIIMAFILGYR---ERRSDNLFHTF 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EI50 SO_1000 "Rhomboid protease" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 236 (88.1 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 65/187 (34%), Positives = 96/187 (51%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A+S  S  +  +  ++GASGA
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451

Query:   240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
             I GL G   ++I      L        HL   +  ++ +GLL  G+DN  H+GGL  G  
Sbjct:   452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAHLGGLGSGLL 510

Query:   300 ISWLLGP 306
             +  +L P
Sbjct:   511 LGCVLRP 517

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1000 SO_1000 "rhomboid family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 236 (88.1 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 65/187 (34%), Positives = 96/187 (51%)

Query:   129 IGRQWTNILLAVNVLVYIAQ-FATQ------DKLLL-WGAKINSLIDKGQFWRLATSAFL 180
             +G   T ILL   VL+++   FA+       + +LL WGA +  L+   Q WRL ++ FL
Sbjct:   332 VGFVITPILLLSKVLIFMLMVFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFL 391

Query:   181 HANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSP-AVGASGA 239
             H  + HL+ N Y L   G  +E + G  R LGVY  S +A+S  S  +  +  ++GASGA
Sbjct:   392 HGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGA 451

Query:   240 IFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAA 299
             I GL G   ++I      L        HL   +  ++ +GLL  G+DN  H+GGL  G  
Sbjct:   452 IMGLFGVLIMWIWMGSLPLATHMLLALHLTLFVSASLVMGLL-GGVDNAAHLGGLGSGLL 510

Query:   300 ISWLLGP 306
             +  +L P
Sbjct:   511 LGCVLRP 517

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 228 (85.3 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 53/155 (34%), Positives = 82/155 (52%)

Query:   155 LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVY 214
             LL  GAK + LI  G++WR  T  FLH  I H ++N  +   +G  +E+  G  R + +Y
Sbjct:   277 LLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRVGMQLERAYGGHRIVPIY 336

Query:   215 FSSAIASSAMS-YRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII 273
                 +A +  S     NS  VGASGAIFG +G     ++R+ ++L         L   II
Sbjct:   337 LLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSVLAKPWLNFGSLLFSII 396

Query:   274 FNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL 308
              + A+GL + G+DN+ H+GG + G   + +  P+L
Sbjct:   397 TSFAVGLFLPGVDNFAHLGGFIAGILTAAIFLPSL 431

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.1e-17, P = 6.1e-17
 Identities = 55/143 (38%), Positives = 80/143 (55%)

Query:   163 NSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASS 222
             + +++K + WRL T  +LHA + HL  N  SL  IG  +E+  G  R   +Y  S I  S
Sbjct:   126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185

Query:   223 AMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL 281
              +S  F  NS +VGASGA+FGL+GS    +  +  I       L  L  VI+ N+AIG+L
Sbjct:   186 VLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGIL 245

Query:   282 IKGIDNWGHVGGLLGGAAISWLL 304
                +DN+ HVGG + G  + ++L
Sbjct:   246 -PHVDNFAHVGGFVTGFLLGFIL 267

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2159808 AT5G38510 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 49/157 (31%), Positives = 85/157 (54%)

Query:   156 LLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYF 215
             LL+GAKIN LI  G++WRL T  FLH+ I H+ ++ ++L + GP + +  G   +  +Y 
Sbjct:   216 LLYGAKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYI 275

Query:   216 SSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN 275
                ++ + MS+     P VG +G  F L+G++ V   +++ ++   + E     K II  
Sbjct:   276 LGGVSGNFMSFLHTADPTVGGTGPAFALIGAWLVDQNQNKEMIKSNEYE-DLFQKAIIMT 334

Query:   276 MAIGLLIK--G-IDNWGHVGGLLGGAAISWLLGPALK 309
                GL++   G ID+W ++G L+ G    +   P L+
Sbjct:   335 -GFGLILSHFGPIDDWTNLGALIAGIVYGFFTCPVLQ 370

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 50/141 (35%), Positives = 79/141 (56%)

Query:   165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
             ++ + Q WRL +  +LHA I HL+ N  SL  IG  +E+  G  R   +Y  S +  S +
Sbjct:   104 VVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSIL 163

Query:   225 SYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIK 283
             S  F   S +VGASGA+FGL+G+    ++ +  I       L  L  +I  N+A+G+L +
Sbjct:   164 SSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGMLPR 223

Query:   284 GIDNWGHVGGLLGGAAISWLL 304
              +DN+ H+GG L G  + ++L
Sbjct:   224 -VDNFAHIGGFLTGFCLGFVL 243

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 51/168 (30%), Positives = 84/168 (50%)

Query:   159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSA 218
             G    +L +  + WR+ TS +LH+ + HL +N  SL  +G  ME+  GP R   +YF S 
Sbjct:   110 GLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFLSG 169

Query:   219 IASSAMSYRFC-NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA 277
             I  S  +  F  N P++ +  A FGL+G+    + ++ N+       L  +  +   N  
Sbjct:   170 IMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVNFL 229

Query:   278 IGLLIKGIDNWGHVGGLLGGAAISWLL--GPALKYEFTSDDGFRIFSD 323
             IG L   IDN+ ++GG + G  + ++L   P L+    S  G ++F D
Sbjct:   230 IGFL-PFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKG-KLFED 275

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-35
COG0705	228	COG0705, COG0705, Membrane associated serine prote	5e-23
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	1e-15
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	2e-10
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	4e-07
PRK10907	276	PRK10907, PRK10907, intramembrane serine protease	5e-06

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  125 bits (316), Expect = 2e-35
 Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 3/147 (2%)

Query: 165 LIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAM 224
           L+ +GQ WRL TS FLHA   HL+ N  +L   G  +E+I G  R+L +Y  S +A S +
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 225 SYRFC--NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI 282
           SY F   +SP+VGASGAIFGL+G+  V + R+R +L      L  L  +I+ N+ +G L 
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP 120

Query: 283 KGIDNWGHVGGLLGGAAISWLLGPALK 309
            GI N+ H+GGL+ G  + +LL    +
Sbjct: 121 -GISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 95.2 bits (237), Expect = 5e-23
 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 25/204 (12%)

Query: 128 FIGRQW--TNILLAVNVLVYIAQ-----------FATQDKLLLWGAKINSLIDKGQFWRL 174
            + R    T  L+ +N+LV++ +                   L+   +   + + Q WRL
Sbjct: 12  RLIRAPPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRL 71

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF---CNS 231
            T+ FLHA   HL+ N  +L   G  +E+  G  R+L  Y  S + +      F     +
Sbjct: 72  ITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGA 131

Query: 232 PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVII-------FNMAIGLLIKG 284
           P++GASGAIFGL+G  A F++     +      L   A ++I            G     
Sbjct: 132 PSLGASGAIFGLLG--AYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPS 189

Query: 285 IDNWGHVGGLLGGAAISWLLGPAL 308
           +    H+GGL+GG  ++ LL   L
Sbjct: 190 VAWSAHLGGLIGGLLLAALLSRKL 213

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 35/202 (17%)

Query: 127 LFIGRQWTNILLAVNV---LVYI-------AQFAT-QDKLLL-WGAKINSLIDKGQFWRL 174
           +F    W + ++A+++   +V+I       A F T  D LL+  GA + S I +G+  RL
Sbjct: 46  IFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRL 105

Query: 175 ATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYR--FCNSP 232
               FLHANI H   N +    +G T+EK  G  + + +YF + I  + +S    +C   
Sbjct: 106 ILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYC-PI 164

Query: 233 AVGASGAIFGLVG------SFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI---- 282
            VGAS +  GL+G           ++RHR          + +  +I F++          
Sbjct: 165 KVGASTSGMGLLGIVTSELILLWHVIRHRE---------RVVFNIIFFSLISFFYYFTFN 215

Query: 283 -KGIDNWGHVGGLLGGAAISWL 303
              ID+ GH+GGLL G ++  L
Sbjct: 216 GSNIDHVGHLGGLLSGISMGIL 237

Length = 278

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 15/178 (8%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++A+ +LV++  Q     ++    A       + Q WR  T A LH ++ H++ N  
Sbjct: 97  TLSVMALCILVFLLMQLGGDQQVFSALAFPADPSQQSQLWRWFTPALLHFSLLHIIFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + L ++  SA+ S+   Y        G SG ++ LVG   V++ 
Sbjct: 157 WWWYLGGQIEKRLGSGKLLVLFLVSALLSNWAQYLVSGPNFGGLSGVVYALVGY--VWLR 214

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAI-------GLLIKGIDNWGHVGGLLGGAAISWL 303
             R       E    L + ++  M +        LL   I N  H+ GLL G  +++ 
Sbjct: 215 GERA-----PESGLGLPRGLMGFMLVWLVLGFFDLLGMSIANAAHLAGLLIGLLMAFW 267

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 164 SLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSA 223
           + I +G++WRL T  F+H N  HL++N   L  +    E+    RR L +    ++  S 
Sbjct: 9   AAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISL 68

Query: 224 MSYRFCNSPA--VGASGAIFGLVGSFAVFIMRHR 255
               F  S    VG SG + GL    A+  +R+ 
Sbjct: 69  GLLLFLPSLQWYVGLSGVLHGLFAWGALRDIRYG 102

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 19/179 (10%)

Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T  ++   V+V+I  Q      ++LW A       K + WR  T A LH ++ H++ N  
Sbjct: 97  TLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLL 156

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   V++ 
Sbjct: 157 WWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGY--VWLR 214

Query: 253 RHRNILGGGKEELQHLAK-VIIFNMAIGLLIKG--------IDNWGHVGGLLGGAAISW 302
             R+   G      +L + +I F  A+  L+ G        I N  HV GL  G A+++
Sbjct: 215 GERDPQSG-----IYLPRGLIAF--ALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAF 266

Length = 276

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PTZ00101	278	rhomboid-1 protease; Provisional	99.96
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.86
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.85
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.72
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.59
KOG2980	310	consensus Integral membrane protease of the rhombo	99.17
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	98.77
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.48
KOG0858	239	consensus Predicted membrane protein [Function unk	98.3
KOG2890	326	consensus Predicted membrane protein [Function unk	98.22
COG5291	313	Predicted membrane protein [Function unknown]	96.99
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.77

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.96  E-value=1.4e-27  Score=224.91  Aligned_cols=180  Identities=24%  Similarity=0.384  Sum_probs=139.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHhch---------HHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHH
Q 019663          130 GRQWTNILLAVNVLVYIAQFATQ---------DKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPT  200 (337)
Q Consensus       130 ~~~~T~~li~i~v~vfll~~~~~---------~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~  200 (337)
                      -+..|..++++++++|++....+         +.+.++|++.+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus        52 i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~  131 (278)
T PTZ00101         52 WKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFT  131 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            44569999999999999876521         257778888777788999999999999999999999999999999999


Q ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHH--HH
Q 019663          201 MEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN--MA  277 (337)
Q Consensus       201 lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~--lv  277 (337)
                      +|+.+|++|++.+|+++|++|++++..+.+ ..++||||++||++++........+.........+..+....++.  +.
T Consensus       132 lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~  211 (278)
T PTZ00101        132 LEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIRHRERVVFNIIFFSLISFFYY  211 (278)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987654 568999999999999987654433322221111111111112222  22


Q ss_pred             HHhccCchhHHHHHHHHHHHHHHHHHHhcccc
Q 019663          278 IGLLIKGIDNWGHVGGLLGGAAISWLLGPALK  309 (337)
Q Consensus       278 l~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~  309 (337)
                      .....+++|++||+||+++|+++|+++.++.+
T Consensus       212 ~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~  243 (278)
T PTZ00101        212 FTFNGSNIDHVGHLGGLLSGISMGILYNSQME  243 (278)
T ss_pred             HhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence            23335789999999999999999999866543

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=1.6e-26  Score=217.86  Aligned_cols=177  Identities=24%  Similarity=0.260  Sum_probs=136.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchH
Q 019663          130 GRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPR  208 (337)
Q Consensus       130 ~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~  208 (337)
                      ..|+|..++++|+++|+++....+ ....+...+......+||||++|++|+|.|+.|+++||+.+|.+|..+|+.+|++
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~  172 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG  172 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence            557899999999999999876543 3444444444455689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHH---HHhccCch
Q 019663          209 RYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMA---IGLLIKGI  285 (337)
Q Consensus       209 ~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lv---l~~l~~~v  285 (337)
                      +++.+|++++++|++..+++......|+||+|||++++..+...+... ....  ..+.+..+.++.++   .++...++
T Consensus       173 ~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~~~p~-~~~~--lp~~~~~f~llwl~~g~~~~~g~~I  249 (276)
T PRK10907        173 KLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGERDPQ-SGIY--LPRGLIAFALLWLVAGYFDLFGMSI  249 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhccccc-cchh--hhHHHHHHHHHHHHHHHHHccCccc
Confidence            999999999999999998888778899999999999976544322111 1110  01112222222222   33445689


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcccc
Q 019663          286 DNWGHVGGLLGGAAISWLLGPALK  309 (337)
Q Consensus       286 s~~gHLgG~l~G~l~g~ll~~~~~  309 (337)
                      ++.||++|+++|+++|++..++.+
T Consensus       250 an~AHlgGli~Gll~g~~~~~~~~  273 (276)
T PRK10907        250 ANAAHVAGLAVGLAMAFWDTRNAR  273 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999998765544

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=2.2e-23  Score=191.44  Aligned_cols=183  Identities=29%  Similarity=0.461  Sum_probs=142.4

Q ss_pred             CchHHHHHHHHHHHHHHHHHhchHH-HHH-------hhhcchhhhccC---CcchheehhcccCCHHHHHHHHHHHHHHH
Q 019663          130 GRQWTNILLAVNVLVYIAQFATQDK-LLL-------WGAKINSLIDKG---QFWRLATSAFLHANIAHLMVNCYSLNSIG  198 (337)
Q Consensus       130 ~~~~T~~li~i~v~vfll~~~~~~~-l~~-------~g~~~~~~i~~g---q~WRL~Ts~FlH~~~~HLl~N~~~L~~~G  198 (337)
                      .++.|..++++|+++|+.+...... ...       .+..+.......   |+||++|++|+|.|+.|+++||+.++.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            5678999999999999998765332 111       223333332222   89999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC---CccccHHHHHHHHHHHHHHHHHhhhhhcCC---chhHHHHHHHHH
Q 019663          199 PTMEKICGPRRYLGVYFSSAIASSAMSYRFCN---SPAVGASGAIFGLVGSFAVFIMRHRNILGG---GKEELQHLAKVI  272 (337)
Q Consensus       199 ~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~---~~~vGaSGaVfGll~a~~v~~~~~~~~l~~---~~~~l~~i~~~l  272 (337)
                      ..+|+.+|+.+|+.+|+++++++++.++.+.+   .+.+|+||+++|+++++.+..+..+.....   +......+...+
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  175 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL  175 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence            99999999999999999999999999888764   369999999999999999999987754432   233333333444


Q ss_pred             HHHHHHHhccC--chhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663          273 IFNMAIGLLIK--GIDNWGHVGGLLGGAAISWLLGPALKYEF  312 (337)
Q Consensus       273 ~~~lvl~~l~~--~vs~~gHLgG~l~G~l~g~ll~~~~~~~~  312 (337)
                      +.++.......  ++++.+|++|+++|+++++.+.++..+++
T Consensus       176 ~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~~~~  217 (228)
T COG0705         176 LYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLRKRR  217 (228)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            44555554433  69999999999999999999877665443

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.86  E-value=2.2e-22  Score=171.10  Aligned_cols=141  Identities=36%  Similarity=0.601  Sum_probs=106.6

Q ss_pred             ccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcCC--ccccHHHHHHHHH
Q 019663          167 DKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNS--PAVGASGAIFGLV  244 (337)
Q Consensus       167 ~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~~--~~vGaSGaVfGll  244 (337)
                      +++|+||++||.|+|.|+.|++.|++.++.+|..+|+.+|+.+++.+|+++++.++++..++.+.  +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            57899999999999999999999999999999999999999999999999999999999887654  5999999999999


Q ss_pred             HHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhccc
Q 019663          245 GSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPAL  308 (337)
Q Consensus       245 ~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~  308 (337)
                      ++.....+..++...............+...+.... .+++++.+|++|+++|++++..+.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999988764333211111111111222333333 578999999999999999999987765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.85  E-value=2.1e-22  Score=191.57  Aligned_cols=169  Identities=31%  Similarity=0.488  Sum_probs=141.7

Q ss_pred             hhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHH
Q 019663          159 GAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGAS  237 (337)
Q Consensus       159 g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaS  237 (337)
                      +....+...++|+||++|++|+|+|+.||++||+.+..+|..+|...|..|+-.+|+++++.|++++.++.. ..++|+|
T Consensus       107 ~~~i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGAS  186 (316)
T KOG2289|consen  107 GLLIYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGAS  186 (316)
T ss_pred             CceecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceeccc
Confidence            344567778899999999999999999999999999999999999999999999999999999999999875 4599999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhcccccccCCccc
Q 019663          238 GAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSDDG  317 (337)
Q Consensus       238 GaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~~~~~~  317 (337)
                      |++||++++.......++..+......+..++.++++++.+++.+ .+++++|++|++.|..+++++..+.+..--..+.
T Consensus       187 ggvfaLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~-~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~  265 (316)
T KOG2289|consen  187 GGVFALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAP-YVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGL  265 (316)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhcccc-ceeccccccccCCCcchhHHhhhccceeEEeccc
Confidence            999999999999998888877766555677777777888888765 6888999999999999999987666554433333


Q ss_pred             cc--cccccCchh
Q 019663          318 FR--IFSDRAPIF  328 (337)
Q Consensus       318 r~--~f~~~~~~~  328 (337)
                      +.  .+.++++..
T Consensus       266 ~~~~~~~~~~~~q  278 (316)
T KOG2289|consen  266 IVLRVFSKRLPYQ  278 (316)
T ss_pred             eeeeccccccccc
Confidence            33  555555543

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.72  E-value=6.1e-17  Score=149.00  Aligned_cols=174  Identities=22%  Similarity=0.260  Sum_probs=139.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 019663          127 LFIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG  206 (337)
Q Consensus       127 ~~~~~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G  206 (337)
                      ..+-+.+|..++.++.++|+......-.  .....+...+.+.|.||++||.++|.+..|+++||+++|.+|...|+..|
T Consensus        11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G   88 (258)
T KOG2632|consen   11 WMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHG   88 (258)
T ss_pred             cccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhcc
Confidence            4445678999999999999988776433  33445667778899999999999999999999999999999999999999


Q ss_pred             -hHHHHHHHHHHHHHHHHHHhHhc----------CCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHH
Q 019663          207 -PRRYLGVYFSSAIASSAMSYRFC----------NSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFN  275 (337)
Q Consensus       207 -~~~fl~lyl~sgi~g~l~s~l~~----------~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~  275 (337)
                       +.+++.++.+.+++.++..++..          .+..+|.|++.|+.+.......+...+.+... ..+.......+..
T Consensus        89 ~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~-~siP~~l~Pw~lL  167 (258)
T KOG2632|consen   89 TTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGL-FSIPIVLAPWALL  167 (258)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccc-ccccHHHHHHHHH
Confidence             88888888888888888876543          24579999999999999888877766433321 1234444555566


Q ss_pred             HHHHhccCchhHHHHHHHHHHHHHHHHH
Q 019663          276 MAIGLLIKGIDNWGHVGGLLGGAAISWL  303 (337)
Q Consensus       276 lvl~~l~~~vs~~gHLgG~l~G~l~g~l  303 (337)
                      +...++.++.++.||++|+++|+++++.
T Consensus       168 i~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  168 IATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            6666777899999999999999999983

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.59  E-value=8.7e-16  Score=149.55  Aligned_cols=146  Identities=30%  Similarity=0.442  Sum_probs=124.5

Q ss_pred             cCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhcC-CccccHHHHHHHHHHH
Q 019663          168 KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCN-SPAVGASGAIFGLVGS  246 (337)
Q Consensus       168 ~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~~-~~~vGaSGaVfGll~a  246 (337)
                      ..|++||+||.|+|+|+.|++..+.....+..-+|+..|..|...+|+++|+.||+.+..+.+ .+.+|+||+-+|++.+
T Consensus       448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila~  527 (652)
T KOG2290|consen  448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILAC  527 (652)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHHH
Confidence            358999999999999999999999999999999999999999999999999999999998875 5799999999999999


Q ss_pred             HHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhcccccccCCc
Q 019663          247 FAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEFTSD  315 (337)
Q Consensus       247 ~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~~~~  315 (337)
                      ..+-.+..+..+..+...+..+.+.+... .++++ +-+|+++|+.|++.|++.++.+.|-......+.
T Consensus       528 l~vEl~qs~~il~~~w~a~~~Lia~~L~L-~iGli-PWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~  594 (652)
T KOG2290|consen  528 LFVELFQSWQILERPWRAFFHLIATLLVL-CIGLI-PWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL  594 (652)
T ss_pred             HHHHHHhhhHhhhhHHHHHHHHHHHHHHH-Hhccc-cchhhHHHHHHHHHHHHHHHHhhccccccchhh
Confidence            99999999988876554444433333333 33665 479999999999999999999998877765444

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=99.17  E-value=1.4e-11  Score=115.66  Aligned_cols=178  Identities=20%  Similarity=0.226  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHhchHH--HHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHH-HHHHHhchHH
Q 019663          133 WTNILLAVNVLVYIAQFATQDK--LLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGP-TMEKICGPRR  209 (337)
Q Consensus       133 ~T~~li~i~v~vfll~~~~~~~--l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~-~lE~~~G~~~  209 (337)
                      ..+.++++|+.+|.++...+-.  ...|...  +.....--|.+++|.|.|.+.+|+..||+.++.+.. .+...+|...
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls--~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~  194 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQKQFTMIPWMLS--RNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSS  194 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcchhhhhhhHHhh--cccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhh
Confidence            6888999999999999887542  2233321  122333456699999999999999999999999988 7878899999


Q ss_pred             HHHHHHHHHHHHHHHHhHh-----cCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHH--HHHH--HHHHHHHHHh
Q 019663          210 YLGVYFSSAIASSAMSYRF-----CNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQ--HLAK--VIIFNMAIGL  280 (337)
Q Consensus       210 fl~lyl~sgi~g~l~s~l~-----~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~--~i~~--~l~~~lvl~~  280 (337)
                      +.++|+.++..|.......     ..++.+||||+++++++..+..+|+.+.++.+....-.  ....  +..+.+-...
T Consensus       195 ~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~  274 (310)
T KOG2980|consen  195 FFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLI  274 (310)
T ss_pred             cccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccccchhHHHHHHHhhhccee
Confidence            9999997666666655433     13578999999999999999999988866544321111  1111  1111111111


Q ss_pred             c-cCchhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663          281 L-IKGIDNWGHVGGLLGGAAISWLLGPALKYEF  312 (337)
Q Consensus       281 l-~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~  312 (337)
                      + -...|+.+|++|.+.|++.+.+..++.++++
T Consensus       275 l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri~kgR  307 (310)
T KOG2980|consen  275 LGWGFFNHAAHLSGSLFGVVVATYLWARIRKGR  307 (310)
T ss_pred             eccccchhHhhhcchHHHHHHHHHHHHHHHcCc
Confidence            1 2457777999999999999999876666553

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=98.77  E-value=1.3e-07  Score=85.37  Aligned_cols=170  Identities=20%  Similarity=0.151  Sum_probs=106.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCCH-HHHHHHHHHHHHHHHHHHHH-h-ch
Q 019663          131 RQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEKI-C-GP  207 (337)
Q Consensus       131 ~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~-~HLl~N~~~L~~~G~~lE~~-~-G~  207 (337)
                      ||+|..+++..+++.++....--+..+....++.+++++|+||++|+.|.-++. .++++|++.++..++.+|+. + ++
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~   81 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR   81 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence            688999999999999888776444444555566667889999999999997766 79999999999999999998 2 22


Q ss_pred             -HHHHHHHHHHHHHHHHHHhHhcCC----ccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhcc
Q 019663          208 -RRYLGVYFSSAIASSAMSYRFCNS----PAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLI  282 (337)
Q Consensus       208 -~~fl~lyl~sgi~g~l~s~l~~~~----~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~  282 (337)
                       .+|+...+.+++.-.+++.+....    +.+| +.-...+.-.++-..|+.+..+... ..++......+. +++.++.
T Consensus        82 ~ady~~~ll~~~~~i~~~~~~~~~~~~~~~~l~-~~l~~~l~Y~wsr~np~~~v~~~g~-~~i~a~ylP~~~-~~~~~l~  158 (197)
T PF04511_consen   82 SADYLWFLLFGASLILILSLLIGPYFFNIPFLG-SSLSFALTYIWSRKNPNAQVSFFGL-FTIKAKYLPWVL-LAFSLLF  158 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhCcccceeeEEE-EEEChhhHHHHH-HHHHHHh
Confidence             578777777766666666543211    1122 1222222222222223222222111 112222222222 3333333


Q ss_pred             CchhHHHHHHHHHHHHHHHHH
Q 019663          283 KGIDNWGHVGGLLGGAAISWL  303 (337)
Q Consensus       283 ~~vs~~gHLgG~l~G~l~g~l  303 (337)
                      .+.+...++.|+++|.++-++
T Consensus       159 ~~~~~~~~l~Gi~~Ghly~fl  179 (197)
T PF04511_consen  159 GGSSPIPDLLGILVGHLYYFL  179 (197)
T ss_pred             CCCcHHHHHHHHHHHHHHHHH
Confidence            344666899999999998544

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.48  E-value=8.4e-08  Score=77.44  Aligned_cols=76  Identities=25%  Similarity=0.447  Sum_probs=65.6

Q ss_pred             CcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhc--------C-----CccccH
Q 019663          170 QFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--------N-----SPAVGA  236 (337)
Q Consensus       170 q~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~--------~-----~~~vGa  236 (337)
                      ++|+++|+.|++.++..++.|.+.++..|+.+|+.||+++++.+.+..+++.|+...+..        +     .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            799999999999999999999999999999999999999999999999999998876532        1     345577


Q ss_pred             HHHHHHHHH
Q 019663          237 SGAIFGLVG  245 (337)
Q Consensus       237 SGaVfGll~  245 (337)
                      .|.+.|++.
T Consensus        87 ~~~~~g~lV   95 (99)
T PF08551_consen   87 MGVLAGFLV   95 (99)
T ss_pred             HHhHhheEE
Confidence            777777654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=98.30  E-value=4.7e-06  Score=76.43  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhchHHHHHhhhcchhhhccCCcchheehhcccCC-HHHHHHHHHHHHHHHHHHHHHh-
Q 019663          128 FIGRQWTNILLAVNVLVYIAQFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHAN-IAHLMVNCYSLNSIGPTMEKIC-  205 (337)
Q Consensus       128 ~~~~~~T~~li~i~v~vfll~~~~~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~-~~HLl~N~~~L~~~G~~lE~~~-  205 (337)
                      .+-||+|....++|++..++....--+..+.-.+++-++++.|+||++|+.+.-+. =.|.++||+.++-..+.+|+-- 
T Consensus        10 ~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f   89 (239)
T KOG0858|consen   10 LQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSF   89 (239)
T ss_pred             hcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCC
Confidence            34578999999999999988877655444555566777889999999999999966 4999999999999999999953 


Q ss_pred             --chHHHHHHHHHHHHHHHHHHh
Q 019663          206 --GPRRYLGVYFSSAIASSAMSY  226 (337)
Q Consensus       206 --G~~~fl~lyl~sgi~g~l~s~  226 (337)
                        -+.+|+.+++.++++-.+.++
T Consensus        90 ~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   90 RGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Confidence              347888888888888776655

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=98.22  E-value=6.4e-06  Score=77.80  Aligned_cols=142  Identities=16%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             CCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHh-------c------CCcccc
Q 019663          169 GQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRF-------C------NSPAVG  235 (337)
Q Consensus       169 gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~-------~------~~~~vG  235 (337)
                      ..+|+++|+.|+-.+++..+.|.+.+.+.|..+|..||+..++.+|.+.....+++....       .      ..+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            489999999999999999999999999999999999999999998886665555543221       1      235789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhc-CCchhHHHHH-HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHhccccccc
Q 019663          236 ASGAIFGLVGSFAVFIMRHRNIL-GGGKEELQHL-AKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALKYEF  312 (337)
Q Consensus       236 aSGaVfGll~a~~v~~~~~~~~l-~~~~~~l~~i-~~~l~~~lvl~~l~~~vs~~gHLgG~l~G~l~g~ll~~~~~~~~  312 (337)
                      .-|.+.|++.++--.+|+..... ..+....+.+ ...+.+.+++.+.  .-...+.+.-+..|...+|.+.+-.++.+
T Consensus       145 ~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~--~f~~f~~l~s~~~g~~~sWtYLRfyq~h~  221 (326)
T KOG2890|consen  145 TTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII--TFLVFASLPSITFGVLVSWTYLRFYQRHP  221 (326)
T ss_pred             chHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH--HHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence            99999999999999888774211 1111110000 1111222233322  34556668888999999999988777765

>COG5291 Predicted membrane protein [Function unknown]

Probab=96.99  E-value=0.0019  Score=59.70  Aligned_cols=88  Identities=16%  Similarity=0.200  Sum_probs=59.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHhchHHHHHhhh--cchhhhccCCcchheehhcccCCH-HHHHHHHHHHHHHHHHHHH-Hh
Q 019663          130 GRQWTNILLAVNVLVYIAQFATQDKLLLWGA--KINSLIDKGQFWRLATSAFLHANI-AHLMVNCYSLNSIGPTMEK-IC  205 (337)
Q Consensus       130 ~~~~T~~li~i~v~vfll~~~~~~~l~~~g~--~~~~~i~~gq~WRL~Ts~FlH~~~-~HLl~N~~~L~~~G~~lE~-~~  205 (337)
                      -||+|..+..+..++.++....-.  ..|..  ..+-.+++.|+||++||-..-++. ...++|++.+|-..+.+|+ ..
T Consensus        19 IPPITRy~~ll~~a~til~~~~lv--sPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f   96 (313)
T COG5291          19 IPPITRYMTLLISAVTILVYVDLV--SPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCF   96 (313)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhc--CccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcccc
Confidence            577887777766666655433311  11111  234455778999999988888775 8999999999999999998 45


Q ss_pred             chH--HHHHHHHHHHH
Q 019663          206 GPR--RYLGVYFSSAI  219 (337)
Q Consensus       206 G~~--~fl~lyl~sgi  219 (337)
                      ++.  .++...+.+.+
T Consensus        97 ~~~lv~Y~~yl~~~~l  112 (313)
T COG5291          97 NTSLVEYFWYLLVISL  112 (313)
T ss_pred             CccHHHHHHHHHHHHH
Confidence            554  55444444433

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.011  Score=55.31  Aligned_cols=85  Identities=25%  Similarity=0.369  Sum_probs=63.3

Q ss_pred             hhcchhhhc-cCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhHhc--------
Q 019663          159 GAKINSLID-KGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFC--------  229 (337)
Q Consensus       159 g~~~~~~i~-~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~~~fl~lyl~sgi~g~l~s~l~~--------  229 (337)
                      +..+...+. ..|+||++-+.|.-.|-..++.-.+.+|.+ +-+|+.+|+.+|..+.+.+++.+-++.+.+.        
T Consensus        38 ~l~y~~~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il~~l~~~~~~  116 (323)
T KOG4463|consen   38 GLSYQDILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVILLSLLKDTTA  116 (323)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444333 479999999999999999999888877776 7799999999999999988888888765431        


Q ss_pred             CCccccHHHHHHHHH
Q 019663          230 NSPAVGASGAIFGLV  244 (337)
Q Consensus       230 ~~~~vGaSGaVfGll  244 (337)
                      +.-.++.-|.+|+.+
T Consensus       117 nl~~~qp~~liFa~~  131 (323)
T KOG4463|consen  117 NLLTSQPYGLIFASF  131 (323)
T ss_pred             hhhhcCCCceeeeec
Confidence            233445555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
3b45_A	180	Crystal Structure Of Glpg At 1.9a Resolution Length		6e-06
2xov_A	181	Crystal Structure Of E.Coli Rhomboid Protease Glpg,		6e-06
2xow_A	179	Structure Of Glpg In Complex With A Mechanism-Based		6e-06
2ic8_A	182	Crystal Structure Of Glpg Length = 182		7e-06
2irv_A	182	Crystal Structure Of Glpg, A Rhomboid Intramembrane		7e-06
2o7l_A	180	The Open-Cap Conformation Of Glpg Length = 180		7e-06
2xtu_A	181	Structure Of E.Coli Rhomboid Protease Glpg Active S		1e-05
2xtv_A	180	Structure Of E.Coli Rhomboid Protease Glpg, Active		1e-05
3b44_A	180	Crystal Structure Of Glpg W136a Mutant Length = 180		4e-04

>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution Length = 180

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native Enzyme Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based Isocoumarin Inhibitor Length = 179

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 6   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 66  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118

>pdb|2IC8|A Chain A, Crystal Structure Of Glpg Length = 182

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine Protease Length = 182

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 6   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 66  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 118

>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 5   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 65  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 117

>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site Mutant, S201t In Trigonal Crystal Form Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G +G ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 119

>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site Mutant, S201t, Orthorhombic Crystal Form Length = 180

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 5   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 64
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G +G ++ L+G
Sbjct: 65  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLTGVVYALMG 117

>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 134 TNILLAVNVLVYIA-QFATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA Q     +++LW A       K +F R  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALMHFSLMHILFNLL 66
Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVG 245
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMG 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-49
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	2e-49

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  162 bits (413), Expect = 1e-49
 Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 1/173 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLG 305
           R        +  L   A + I      L    + N  H+ GL  G A++++  
Sbjct: 127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDS 179

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  162 bits (413), Expect = 2e-49
 Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 1/177 (0%)

Query: 134 TNILLAVNVLVYIAQFATQDKLLLWGAKINSLID-KGQFWRLATSAFLHANIAHLMVNCY 192
           T IL A+ VL+YIAQ    +  +++     +  +   + WR  +   +H +  H++ N  
Sbjct: 12  TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 71

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
                G  +E+  G  + L +Y  ++  +  +          G SG ++ ++G   +   
Sbjct: 72  WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDK 131

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
            + ++    +     L   I       L    + N  H+ GL+ G    ++     K
Sbjct: 132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.96
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.96  E-value=1.8e-29  Score=226.11  Aligned_cols=184  Identities=18%  Similarity=0.225  Sum_probs=137.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhc
Q 019663          128 FIGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICG  206 (337)
Q Consensus       128 ~~~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G  206 (337)
                      .+.+|+|..++++|+++|+++....+ ...++....++.+.++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G   85 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG   85 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            45578999999999999999877643 34455555555567899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchh
Q 019663          207 PRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGID  286 (337)
Q Consensus       207 ~~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs  286 (337)
                      +++++.+|+.+++.|++.++++.+...+|+||++||++++..+.....+..+..+..........++..+......+++|
T Consensus        86 ~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  165 (196)
T 2nr9_A           86 SVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMG  165 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            99999999999999999999887767999999999999976654322222211111111011111111211111234899


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccc
Q 019663          287 NWGHVGGLLGGAAISWLLGPALKYE  311 (337)
Q Consensus       287 ~~gHLgG~l~G~l~g~ll~~~~~~~  311 (337)
                      +.||++|+++|+++++.+.++.+++
T Consensus       166 ~~aHlgG~l~G~l~~~~~~~~~~~~  190 (196)
T 2nr9_A          166 NAAHISGLIVGLIWGFIDSKLRKNS  190 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999887654433

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=3.3e-28  Score=215.20  Aligned_cols=175  Identities=23%  Similarity=0.262  Sum_probs=136.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhchH-HHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhch
Q 019663          129 IGRQWTNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (337)
Q Consensus       129 ~~~~~T~~li~i~v~vfll~~~~~~-~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~  207 (337)
                      +.+|+|..++++|+++|+++....+ ...++....++.+.++||||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~   81 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            4578999999999999999877543 344555555555678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhc---cCc
Q 019663          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLL---IKG  284 (337)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l---~~~  284 (337)
                      ++++.+|+.+++.+++.++++.+...+|+||+++|++++..+.....++......  . ......+..++.++.   .++
T Consensus        82 ~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~~  158 (181)
T 2xov_A           82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQ--R-GLIIFALIWIVAGWFDLFGMS  158 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCC--H-HHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCceeeeH--H-HHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999887767999999999999987653322222111111  1 111222233334433   358


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 019663          285 IDNWGHVGGLLGGAAISWLLGP  306 (337)
Q Consensus       285 vs~~gHLgG~l~G~l~g~ll~~  306 (337)
                      +|+.+|++|+++|+++++.+++
T Consensus       159 v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          159 MANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	2e-28
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	1e-25

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 1/171 (0%)

Query: 134 TNILLAVNVLVYIAQFATQD-KLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T +++   V+V+IA     D +++LW A       K +FWR  T A +H ++ H++ N  
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
               +G  +EK  G  + + +   SA+ S  +  +F      G SG ++ L+G   +   
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE 126

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWL 303
           R        +  L   A + I      L    + N  H+ GL  G A++++
Sbjct: 127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 99.5 bits (247), Expect = 1e-25
 Identities = 34/177 (19%), Positives = 67/177 (37%), Gaps = 1/177 (0%)

Query: 134 TNILLAVNVLVYIAQ-FATQDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCY 192
           T IL A+ VL+YIAQ    +D ++             + WR  +   +H +  H++ N  
Sbjct: 9   TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 68

Query: 193 SLNSIGPTMEKICGPRRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIM 252
                G  +E+  G  + L +Y  ++  +  +          G SG ++ ++G   +   
Sbjct: 69  WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDK 128

Query: 253 RHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDNWGHVGGLLGGAAISWLLGPALK 309
            + ++    +     L   I       L    + N  H+ GL+ G    ++     K
Sbjct: 129 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.96
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.96

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=1.9e-29  Score=222.20  Aligned_cols=183  Identities=19%  Similarity=0.242  Sum_probs=148.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhc-hHHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhch
Q 019663          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (337)
Q Consensus       129 ~~~~~T~~li~i~v~vfll~~~~-~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~  207 (337)
                      +..|+|.+++++|+++|+++... .+........+.....++||||++|+.|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~   83 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   83 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999998775 34444555556667788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhH
Q 019663          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN  287 (337)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~  287 (337)
                      .+++.+|+.+++.|++.+.+..+.+.+|+||+++|++++.....+.++.....+......+...+.+.++.....+++++
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (189)
T d2nr9a1          84 VKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGN  163 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCH
T ss_pred             HhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHHHHHHHhccCCChHH
Confidence            99999999999999999998888899999999999999888877777655443322222222222333444445678999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q 019663          288 WGHVGGLLGGAAISWLLGPALKYE  311 (337)
Q Consensus       288 ~gHLgG~l~G~l~g~ll~~~~~~~  311 (337)
                      .||++|+++|++++++..+..|++
T Consensus       164 ~aHl~G~l~G~~~g~~~~~~~k~~  187 (189)
T d2nr9a1         164 AAHISGLIVGLIWGFIDSKLRKNS  187 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccccc
Confidence            999999999999999986655543

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=7.4e-28  Score=210.00  Aligned_cols=176  Identities=23%  Similarity=0.261  Sum_probs=145.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhc-hHHHHHhhhcchhhhccCCcchheehhcccCCHHHHHHHHHHHHHHHHHHHHHhch
Q 019663          129 IGRQWTNILLAVNVLVYIAQFAT-QDKLLLWGAKINSLIDKGQFWRLATSAFLHANIAHLMVNCYSLNSIGPTMEKICGP  207 (337)
Q Consensus       129 ~~~~~T~~li~i~v~vfll~~~~-~~~l~~~g~~~~~~i~~gq~WRL~Ts~FlH~~~~HLl~N~~~L~~~G~~lE~~~G~  207 (337)
                      |..|+|..++++|+++|+++... +.+..++...+.+...++||||++|+.|+|.|+.|+++||+.++.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            56799999999999999987654 45666777777777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhcCCccccHHHHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHHHHHHHhccCchhH
Q 019663          208 RRYLGVYFSSAIASSAMSYRFCNSPAVGASGAIFGLVGSFAVFIMRHRNILGGGKEELQHLAKVIIFNMAIGLLIKGIDN  287 (337)
Q Consensus       208 ~~fl~lyl~sgi~g~l~s~l~~~~~~vGaSGaVfGll~a~~v~~~~~~~~l~~~~~~l~~i~~~l~~~lvl~~l~~~vs~  287 (337)
                      ++++.+|+.+++.|++++.++.++...|+||+++|++++..+..++.+...........................+++++
T Consensus        82 ~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (180)
T d3b45a1          82 GKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMAN  161 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCH
T ss_pred             hhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHHHHHHHHhccCchHH
Confidence            99999999999999999999999999999999999999998887766654433332222222222333334444578999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 019663          288 WGHVGGLLGGAAISWLL  304 (337)
Q Consensus       288 ~gHLgG~l~G~l~g~ll  304 (337)
                      .||++|+++|++++++.
T Consensus       162 ~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         162 GAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999875