Citrus Sinensis ID: 019676

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MMISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSSGEETKSVVNTGSGGGGGGDGGGGDGSDDEEAEGQSGALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDSQLKTNPALPD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEccccccccccccccccEEEEEccccccEEEEEccEEEEccEEccccccccccccccccEEcccccEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHcHHHHccccccHHHHHHHcccccccccccccccEEEcccccccccccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccEEEEEEEEEEEcccccccEEEEcccHHHHHccccccHHHEEEEEEccccEEEEEccEEEEccEEccccHcccccccccccEEcccccEEEEcccccccccccEcccccHHHEEEEEEEEEcccHHcccccccccccccccccccccccc
mmislnllptlpslqnpnftstqssnplknpnfaakpfskslknpyftilnlhpksnppqfsrtrwpfvsinpnfvnfqhqnprplnpknllYRLNCNKLKSSGEETKSvvntgsggggggdggggdgsddeeaegqsgalpgwlnitSDDAKTVLAALVISLAFRsfvaepryipslsmyptfdvgdRIVAEKVTYYfrkpcsndivifksppvlqevgytdddVFIKRVVakegdvvevregklivngvvrnedyileapsynmtpitvpensvfvmgdnrnnsydshvwgplpakniigrsvfrywppqrigstvpeggcavdsqlktnpalpd
MMISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSSGEETKSvvntgsggggggDGGGGDGSDDEEAEGQSGALPGWLNITSDDAKTVLAALVISLAFRSfvaepryipslsmyptfdvGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVvakegdvvevregklivngvvrnedyileapsynmtpitVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRigstvpeggcavdsqlktnpalpd
MMISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSSGEETKSVVNTgsggggggdggggdgsddeeaegqsgALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDSQLKTNPALPD
*******************************************NPYFTILNLH*******FSRTRWPFVSINPNFVNFQHQ******PKNLLYRLNC*******************************************LPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTV*******************
*******LPTLPSLQNPNFT***SS**************************************************************************************************************************TSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGG***************
MMISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSSGEETKSVVNTGSGGG*******************SGALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDSQLKTNPALPD
**ISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSS*****S******************************ALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTV*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMISLNLLPTLPSLQNPNFTSTQSSNPLKNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTRWPFVSINPNFVNFQHQNPRPLNPKNLLYRLNCNKLKSSGEETKSVVNTGSGGGGGGDGGGGDGSDDEEAEGQSGALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDSQLKTNPALPD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q8H0W1291 Chloroplast processing pe yes no 0.753 0.872 0.686 9e-93
O04348340 Thylakoidal processing pe no no 0.581 0.576 0.568 5e-63
Q9M9Z2367 Probable thylakoidal proc no no 0.557 0.512 0.601 5e-62
P72660196 Probable signal peptidase N/A no 0.448 0.770 0.549 7e-41
Q51876203 Signal peptidase I OS=Pho N/A no 0.504 0.837 0.452 4e-40
P73157218 Probable signal peptidase N/A no 0.492 0.761 0.424 1e-37
Q10789294 Signal peptidase I OS=Myc yes no 0.548 0.629 0.309 6e-19
O33021289 Probable signal peptidase yes no 0.480 0.560 0.315 7e-18
P71013193 Signal peptidase I T OS=B yes no 0.468 0.818 0.310 4e-15
P28628184 Signal peptidase I S OS=B no no 0.462 0.847 0.303 4e-15
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2 Back     alignment and function desciption
 Score =  340 bits (872), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 182/265 (68%), Positives = 201/265 (75%), Gaps = 11/265 (4%)

Query: 72  NPNFVNF----QHQNPRPLN---PKNLLYR-LNCNKLKSSGEETKSVVNTGSGGGGGGDG 123
           NPNF+ F    Q   P+ LN     NL  R L+C  +K S E TKS     S   G G G
Sbjct: 30  NPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSCYGIKDSSETTKS---APSLDSGDGGG 86

Query: 124 GGGDGSDDEEAEGQSGALPGWLNITSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPT 183
           G G   D  E E ++   P WL+ TSDDA+TV  A+ +SLAFR F+AEPRYIPSLSMYPT
Sbjct: 87  GDGGDDDKGEVEEKNRLFPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPT 146

Query: 184 FDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVRE 243
           FDVGDR+VAEKV+YYFRKPC+NDIVIFKSPPVLQEVGYTD DVFIKR+VAKEGD+VEV  
Sbjct: 147 FDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHN 206

Query: 244 GKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGR 303
           GKL+VNGV RNE +ILE P Y MTPI VPENSVFVMGDNRNNSYDSHVWGPLP KNIIGR
Sbjct: 207 GKLMVNGVARNEKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYDSHVWGPLPLKNIIGR 266

Query: 304 SVFRYWPPQRIGSTVPEGGCAVDSQ 328
           SVFRYWPP R+  TV EGGCAVD Q
Sbjct: 267 SVFRYWPPNRVSGTVLEGGCAVDKQ 291
Involved in the maturation of the plastid protein translocation channel. Required for the biogenesis of plastid internal membranes. May also function as a thylakoidal processing peptidase.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1 Back     alignment and function description
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB1 PE=3 SV=1 Back     alignment and function description
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1 Back     alignment and function description
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB2 PE=3 SV=1 Back     alignment and function description
>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1 Back     alignment and function description
>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN) GN=lepB PE=3 SV=1 Back     alignment and function description
>sp|P71013|LEPT_BACSU Signal peptidase I T OS=Bacillus subtilis (strain 168) GN=sipT PE=1 SV=1 Back     alignment and function description
>sp|P28628|LEPS_BACSU Signal peptidase I S OS=Bacillus subtilis (strain 168) GN=sipS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
225445220334 PREDICTED: chloroplast processing peptid 0.884 0.892 0.664 1e-108
255546463313 signal peptidase I, putative [Ricinus co 0.916 0.987 0.631 1e-102
449518835331 PREDICTED: chloroplast processing peptid 0.943 0.960 0.618 1e-100
449467167331 PREDICTED: chloroplast processing peptid 0.946 0.963 0.605 1e-100
356523807293 PREDICTED: chloroplast processing peptid 0.842 0.969 0.573 1e-93
224142153202 predicted protein [Populus trichocarpa] 0.584 0.975 0.812 5e-91
9294054310 unnamed protein product [Arabidopsis tha 0.753 0.819 0.686 5e-91
224119740202 predicted protein [Populus trichocarpa] 0.587 0.980 0.808 5e-91
30687572291 chloroplast processing peptidase [Arabid 0.753 0.872 0.686 6e-91
25082936291 chloroplast thylakoidal processing pepti 0.753 0.872 0.683 3e-90
>gi|225445220|ref|XP_002284378.1| PREDICTED: chloroplast processing peptidase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/310 (66%), Positives = 239/310 (77%), Gaps = 12/310 (3%)

Query: 29  KNPNFAAKPFSKSLKNPYFTILNLHPKSNPPQFSRTR-WPFVSINPNFVNFQHQNPRPLN 87
           ++PN       K ++NP F + NL+P S  P FS+    PF   NPNF  F     +P+N
Sbjct: 17  RDPNLVLVQRLKRIENPSFIVFNLYPISRTPHFSKKLILPFE--NPNFQGF-----KPIN 69

Query: 88  PKNLLYRLNCNKLKSSGEETKSVVNTGSGGGGGGDGGGGDGSDDEEAEGQSGALPGWLNI 147
            +  L RLNCN  K S EETK+V++   G GGG  G        E+ + + G LP W+N+
Sbjct: 70  SRTRLQRLNCNGFKDSSEETKAVLDEEGGDGGGDGGDDAQT---EKKDAKVGILPEWVNL 126

Query: 148 TSDDAKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDI 207
           TSDDAKTV AAL IS AFRSFVAEPR+IPSLSMYPTFDVGDRIVAEKV+YYFRKPC+NDI
Sbjct: 127 TSDDAKTVFAALAISFAFRSFVAEPRFIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDI 186

Query: 208 VIFKSPPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMT 267
           VIFKSPPVLQEVGYTD+DVFIKR+VAKEGD VEVREGKLIVNGVVRNE++I E PSY+MT
Sbjct: 187 VIFKSPPVLQEVGYTDEDVFIKRIVAKEGDTVEVREGKLIVNGVVRNENFIFERPSYSMT 246

Query: 268 PITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDS 327
           PI VPEN+VFVMGDNRNNSYDSHVWG LPAKNI+GRS+FRYWPP RIG TV + GCAVD 
Sbjct: 247 PIRVPENAVFVMGDNRNNSYDSHVWGSLPAKNILGRSIFRYWPPNRIGGTVSDAGCAVDK 306

Query: 328 QLKTNPALPD 337
           Q +++PAL D
Sbjct: 307 Q-ESSPALSD 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546463|ref|XP_002514291.1| signal peptidase I, putative [Ricinus communis] gi|223546747|gb|EEF48245.1| signal peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449518835|ref|XP_004166441.1| PREDICTED: chloroplast processing peptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449467167|ref|XP_004151296.1| PREDICTED: chloroplast processing peptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523807|ref|XP_003530526.1| PREDICTED: chloroplast processing peptidase-like [Glycine max] Back     alignment and taxonomy information
>gi|224142153|ref|XP_002324423.1| predicted protein [Populus trichocarpa] gi|222865857|gb|EEF02988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|9294054|dbj|BAB02011.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224119740|ref|XP_002331149.1| predicted protein [Populus trichocarpa] gi|222873232|gb|EEF10363.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30687572|ref|NP_189102.2| chloroplast processing peptidase [Arabidopsis thaliana] gi|160419231|sp|Q8H0W1.2|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gi|51536582|gb|AAU05529.1| At1g05140 [Arabidopsis thaliana] gi|332643406|gb|AEE76927.1| chloroplast processing peptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|25082936|gb|AAN72018.1| chloroplast thylakoidal processing peptidase, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2091717291 PLSP1 "plastidic type i signal 0.821 0.951 0.611 6.9e-86
TAIR|locus:2064337340 TPP "thylakoid processing pept 0.522 0.517 0.595 5.1e-58
TAIR|locus:2033108367 Plsp2A "plastidic type I signa 0.522 0.479 0.622 1.1e-57
TIGR_CMR|CHY_1360184 CHY_1360 "signal peptidase I" 0.483 0.885 0.321 1.6e-22
TIGR_CMR|GSU_1267222 GSU_1267 "signal peptidase I" 0.486 0.738 0.351 3.9e-21
TIGR_CMR|BA_3977183 BA_3977 "signal peptidase I S" 0.442 0.814 0.331 4.6e-18
TIGR_CMR|SO_2924220 SO_2924 "signal peptidase I fa 0.314 0.481 0.345 2.5e-17
TIGR_CMR|DET_1192192 DET_1192 "signal peptidase I" 0.454 0.796 0.331 2.5e-17
TIGR_CMR|BA_1140187 BA_1140 "signal peptidase I" [ 0.474 0.855 0.289 2.2e-15
TIGR_CMR|BA_3099183 BA_3099 "Signal peptidase I U" 0.456 0.841 0.305 8.6e-15
TAIR|locus:2091717 PLSP1 "plastidic type i signal peptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 178/291 (61%), Positives = 205/291 (70%)

Query:    49 ILNLHPKSNPPQF--SRTRWPFV-SINPNFVNFQHQN----PRPLN---PKNLLYR-LNC 97
             +++LH  + P  F  S +   F+ + NPNF+ F  ++    P+ LN     NL  R L+C
Sbjct:     4 MISLHFSTPPLAFLKSDSNSRFLKNPNPNFIQFTPKSQLLFPQRLNFNTGTNLNRRTLSC 63

Query:    98 NKLKSSGEETKSVVNTXXXXXXXXXXXXXXXXXXXXXXXXXXALPGWLNITSDDAKTVLA 157
               +K S E TKS  +                             P WL+ TSDDA+TV  
Sbjct:    64 YGIKDSSETTKSAPSLDSGDGGGGDGGDDDKGEVEEKNRL---FPEWLDFTSDDAQTVFV 120

Query:   158 ALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQ 217
             A+ +SLAFR F+AEPRYIPSLSMYPTFDVGDR+VAEKV+YYFRKPC+NDIVIFKSPPVLQ
Sbjct:   121 AIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCANDIVIFKSPPVLQ 180

Query:   218 EVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVF 277
             EVGYTD DVFIKR+VAKEGD+VEV  GKL+VNGV RNE +ILE P Y MTPI VPENSVF
Sbjct:   181 EVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGYEMTPIRVPENSVF 240

Query:   278 VMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIGSTVPEGGCAVDSQ 328
             VMGDNRNNSYDSHVWGPLP KNIIGRSVFRYWPP R+  TV EGGCAVD Q
Sbjct:   241 VMGDNRNNSYDSHVWGPLPLKNIIGRSVFRYWPPNRVSGTVLEGGCAVDKQ 291
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008233 "peptidase activity" evidence=ISS;IMP
GO:0008236 "serine-type peptidase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=ISS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009526 "plastid envelope" evidence=IDA
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0051604 "protein maturation" evidence=IMP
GO:0006364 "rRNA processing" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0051607 "defense response to virus" evidence=RCA
TAIR|locus:2064337 TPP "thylakoid processing peptide" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033108 Plsp2A "plastidic type I signal peptidase 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1360 CHY_1360 "signal peptidase I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1267 GSU_1267 "signal peptidase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3977 BA_3977 "signal peptidase I S" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2924 SO_2924 "signal peptidase I family protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1192 DET_1192 "signal peptidase I" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1140 BA_1140 "signal peptidase I" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3099 BA_3099 "Signal peptidase I U" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H0W1PLSP1_ARATH3, ., 4, ., 2, 1, ., 8, 90.68670.75370.8728yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.963
3rd Layer3.4.21.890.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
TIGR02227163 TIGR02227, sigpep_I_bact, signal peptidase I, bact 3e-49
cd0653085 cd06530, S26_SPase_I, The S26 Type I signal peptid 1e-23
COG0681166 COG0681, LepB, Signal peptidase I [Intracellular t 3e-16
PRK10861324 PRK10861, PRK10861, signal peptidase I; Provisiona 5e-13
cd0646284 cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign 5e-13
pfam10502138 pfam10502, Peptidase_S26, Signal peptidase, peptid 1e-12
pfam0071769 pfam00717, Peptidase_S24, Peptidase S24-like 6e-09
TIGR02771171 TIGR02771, TraF_Ti, conjugative transfer signal pe 2e-07
PRK10861324 PRK10861, PRK10861, signal peptidase I; Provisiona 3e-07
COG4959173 COG4959, TraF, Type IV secretory pathway, protease 9e-05
PRK13838176 PRK13838, PRK13838, conjugal transfer pilin proces 2e-04
cd0652981 cd06529, S24_LexA-like, Peptidase S24 LexA-like pr 6e-04
TIGR0275490 TIGR02754, sod_Ni_protease, nickel-type superoxide 0.002
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type Back     alignment and domain information 
 Score =  161 bits (410), Expect = 3e-49
 Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 15/166 (9%)

Query: 153 KTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKS 212
            ++L A++++L  R+FV  P  +P  SM PT   GDRI+  K  Y    P   DIV+FK 
Sbjct: 3   LSLLIAILLALLIRTFVFFPYKVPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKD 62

Query: 213 PPVLQEVGYTDDDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYI--------LEAPSY 264
           P         + +++IKRV+   GD VE R+GKL +NG   +E Y+         E  + 
Sbjct: 63  PD-------DNKNIYIKRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGFLDTSEFNTT 115

Query: 265 NMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWP 310
           +  P+TVP    FV+GDNR+NS DS  +G +P  +IIG+  F ++P
Sbjct: 116 DYGPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGKVSFVFYP 161

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163
>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3 Back     alignment and domain information
>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional Back     alignment and domain information
>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families Back     alignment and domain information
>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26 Back     alignment and domain information
>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like Back     alignment and domain information
>gnl|CDD|131818 TIGR02771, TraF_Ti, conjugative transfer signal peptidase TraF Back     alignment and domain information
>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional Back     alignment and domain information
>gnl|CDD|227294 COG4959, TraF, Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|172365 PRK13838, PRK13838, conjugal transfer pilin processing protease TraF; Provisional Back     alignment and domain information
>gnl|CDD|119397 cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell Back     alignment and domain information
>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase maturation protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
TIGR02227163 sigpep_I_bact signal peptidase I, bacterial type. 100.0
PRK10861324 signal peptidase I; Provisional 100.0
KOG0171176 consensus Mitochondrial inner membrane protease, s 99.98
PRK13838176 conjugal transfer pilin processing protease TraF; 99.93
KOG1568174 consensus Mitochondrial inner membrane protease, s 99.93
PRK13884178 conjugal transfer peptidase TraF; Provisional 99.92
TIGR02771171 TraF_Ti conjugative transfer signal peptidase TraF 99.92
PF10502138 Peptidase_S26: Signal peptidase, peptidase S26 ; I 99.89
TIGR0275490 sod_Ni_protease nickel-type superoxide dismutase m 99.77
cd0653085 S26_SPase_I The S26 Type I signal peptidase (SPase 99.72
COG4959173 TraF Type IV secretory pathway, protease TraF [Pos 99.69
TIGR02228158 sigpep_I_arch signal peptidase I, archaeal type. T 99.56
COG0681166 LepB Signal peptidase I [Intracellular trafficking 99.5
PF0071770 Peptidase_S24: Peptidase S24-like peptidase classi 99.13
cd0646284 Peptidase_S24_S26 The S24, S26 LexA/signal peptida 98.91
COG2932214 Predicted transcriptional regulator [Transcription 98.54
cd0652981 S24_LexA-like Peptidase S24 LexA-like proteins are 98.47
KOG3342180 consensus Signal peptidase I [Intracellular traffi 98.43
PRK10276139 DNA polymerase V subunit UmuD; Provisional 98.26
TIGR00498199 lexA SOS regulatory protein LexA. LexA acts as a h 98.07
PRK00215205 LexA repressor; Validated 98.06
PRK12423202 LexA repressor; Provisional 97.98
COG1974201 LexA SOS-response transcriptional repressors (RecA 97.34
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=287.45  Aligned_cols=154  Identities=40%  Similarity=0.711  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHheeeeEEEcCCCccccccCCCEEEEEeeecccCCCCCCcEEEEeCCccccccccCCCccEEEEE
Q 019676          152 AKTVLAALVISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRV  231 (337)
Q Consensus       152 ~~~llv~lii~lll~~~i~~~~~V~gdSMePTL~~GD~VLVdk~~~~~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRV  231 (337)
                      +..++++++++++++.++++.+.|.|+||+|||++||++++++..+....+++||+|+|+.|..       .+..+||||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~-------~~~~~iKRV   74 (163)
T TIGR02227         2 ILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDD-------NKNIYVKRV   74 (163)
T ss_pred             HHHHHHHHHHHHHHHhhEEEEEEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCC-------CCceeEEEE
Confidence            3566777788889999999999999999999999999999999987667899999999998753       567899999


Q ss_pred             EeeCCCEEEEeCCEEEECCEEccccccccCC--------CCCCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEE
Q 019676          232 VAKEGDVVEVREGKLIVNGVVRNEDYILEAP--------SYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGR  303 (337)
Q Consensus       232 ialPGDtV~i~dg~lyVNG~~~~e~~~~~~p--------~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGk  303 (337)
                      +|+|||+|+++++.+||||+.+++.|.....        .......+||+|||||||||+++|+||||||+|++++|+||
T Consensus        75 ig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~G~V~~~~I~Gk  154 (163)
T TIGR02227        75 IGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGK  154 (163)
T ss_pred             EecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCcCcCCHHHeEEE
Confidence            9999999999999999999999988764321        12344679999999999999999999999999999999999


Q ss_pred             EEEEEcCCC
Q 019676          304 SVFRYWPPQ  312 (337)
Q Consensus       304 v~~~lwP~~  312 (337)
                      |++++||++
T Consensus       155 ~~~~~~p~~  163 (163)
T TIGR02227       155 VSFVFYPFD  163 (163)
T ss_pred             EEEEECCCC
Confidence            999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
>PRK10861 signal peptidase I; Provisional Back     alignment and domain information
>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional Back     alignment and domain information
>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13884 conjugal transfer peptidase TraF; Provisional Back     alignment and domain information
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF Back     alignment and domain information
>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease Back     alignment and domain information
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3 Back     alignment and domain information
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type Back     alignment and domain information
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification Back     alignment and domain information
>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families Back     alignment and domain information
>COG2932 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell Back     alignment and domain information
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10276 DNA polymerase V subunit UmuD; Provisional Back     alignment and domain information
>TIGR00498 lexA SOS regulatory protein LexA Back     alignment and domain information
>PRK00215 LexA repressor; Validated Back     alignment and domain information
>PRK12423 LexA repressor; Provisional Back     alignment and domain information
>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1b12_A248 Crystal Structure Of Type 1 Signal Peptidase From E 2e-05
1t7d_A250 Crystal Structure Of Escherichia Coli Type I Signal 2e-05
1kn9_A249 Crystal Structure Of A Bacterial Signal Peptidase A 2e-05
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From Escherichia Coli In Complex With A Beta-Lactam Inhibitor Length = 248 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 260 EAPSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSV 305
           + P   +    VP    F+MGDNR+NS DS  WG +P  N++GR+ 
Sbjct: 177 QQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRAT 222
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal Peptidase In Complex With A Lipopeptide Inhibitor Length = 250 Back     alignment and structure
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo- Enzyme, Implications For Signal Peptide Binding And The Ser-Lys Dyad Mechanism. Length = 249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1b12_A248 Signal peptidase I; serine proteinase, serine-depe 100.0
1kca_A109 Repressor protein CI; gene regulation, DNA-binding 99.14
1umu_A116 UMUD'; induced mutagenesis, SOS mutagenesis, DNA r 98.98
1jhf_A202 LEXA repressor; LEXA SOS repressor, hydrolase; 1.8 98.84
3bdn_A236 Lambda repressor; repressor, allostery; HET: DNA; 98.68
2hnf_A133 Repressor protein CI101-229DM-K192A; viral protein 98.64
3k2z_A196 LEXA repressor; winged helix-turn-helix, SOS syste 98.31
2fjr_A189 Repressor protein CI; genetic switch, regulation, 95.66
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-35  Score=275.51  Aligned_cols=143  Identities=36%  Similarity=0.536  Sum_probs=118.4

Q ss_pred             HHHheeeeEEEcCCCccccccCCCEEEEEeeecc------------cCCCCCCcEEEEeCCccccccccCCCccEEEEEE
Q 019676          165 FRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYY------------FRKPCSNDIVIFKSPPVLQEVGYTDDDVFIKRVV  232 (337)
Q Consensus       165 l~~~i~~~~~V~gdSMePTL~~GD~VLVdk~~~~------------~~~pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVi  232 (337)
                      ++.|+++++.|.|+||+|||++||+|+|+|..|.            ...+++||||+|+.|..       .+..+||||+
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi   73 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV   73 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred             CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence            3578999999999999999999999999998764            25799999999998752       4678999999


Q ss_pred             eeCCCEEEEeCC--EEEECC-----------EEccccccc----------------------------------------
Q 019676          233 AKEGDVVEVREG--KLIVNG-----------VVRNEDYIL----------------------------------------  259 (337)
Q Consensus       233 alPGDtV~i~dg--~lyVNG-----------~~~~e~~~~----------------------------------------  259 (337)
                      |+|||+|+++++  .+||||           +.+.+.+..                                        
T Consensus        74 glpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e  153 (248)
T 1b12_A           74 GLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKE  153 (248)
T ss_dssp             ECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEE
T ss_pred             eeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHh
Confidence            999999999999  999999           554322110                                        


Q ss_pred             ----------cCCCC-------------CCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEEcCCCCC
Q 019676          260 ----------EAPSY-------------NMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRI  314 (337)
Q Consensus       260 ----------~~p~~-------------~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~lwP~~r~  314 (337)
                                ..+..             ....++||+|+|||||||+++|.||||||+||+++|+|||+++|||+++.
T Consensus       154 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~  231 (248)
T 1b12_A          154 TLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ  231 (248)
T ss_dssp             EETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred             hhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence                      00110             22357999999999999999999999999999999999999999988754
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1 Back     alignment and structure
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A Back     alignment and structure
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A Back     alignment and structure
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Back     alignment and structure
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A Back     alignment and structure
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} Back     alignment and structure
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1b12a_247 b.87.1.2 (A:) Type 1 signal peptidase {Escherichia 2e-18
d1b12a_247 b.87.1.2 (A:) Type 1 signal peptidase {Escherichia 7e-15
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 81.2 bits (199), Expect = 2e-18
 Identities = 34/155 (21%), Positives = 52/155 (33%), Gaps = 5/155 (3%)

Query: 166 RSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRKPCSNDIVIFKSPPVLQEVGYTD-- 223
           RSF+ EP  IPS SM PT  +GD I+ EK  Y  + P     +I    P   ++      
Sbjct: 1   RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYP 60

Query: 224 ---DDVFIKRVVAKEGDVVEVREGKLIVNGVVRNEDYILEAPSYNMTPITVPENSVFVMG 280
                 +IKR V   GD V        +              +  +T   V  +      
Sbjct: 61  EDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTF 120

Query: 281 DNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQRIG 315
             RN    +  +  +P        +      + +G
Sbjct: 121 SRRNGGEATSGFFEVPKNETKENGIRLSERKETLG 155
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1b12a_247 Type 1 signal peptidase {Escherichia coli [TaxId: 100.0
d1f39a_101 lambda repressor C-terminal domain {Bacteriophage 98.91
d1jhfa2126 LexA C-terminal domain {Escherichia coli [TaxId: 5 98.69
d1umua_105 UmuD' {Escherichia coli [TaxId: 562]} 98.3
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.7e-35  Score=266.42  Aligned_cols=140  Identities=37%  Similarity=0.562  Sum_probs=111.8

Q ss_pred             HHheeeeEEEcCCCccccccCCCEEEEEeeecccCC------------CCCCcEEEEeCCccccccccCCCccEEEEEEe
Q 019676          166 RSFVAEPRYIPSLSMYPTFDVGDRIVAEKVTYYFRK------------PCSNDIVIFKSPPVLQEVGYTDDDVFIKRVVA  233 (337)
Q Consensus       166 ~~~i~~~~~V~gdSMePTL~~GD~VLVdk~~~~~~~------------pkrGDIVVf~~P~~~~~~gy~~~~~~VKRVia  233 (337)
                      +.|+++++.|++.||+|||+.||+|+|+|.+|+++.            +++||+|+|..|.+       ....+||||+|
T Consensus         1 R~f~~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~-------~~~~~ikR~ig   73 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAVG   73 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEEE
T ss_pred             CEEEEEEEEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCC-------CCccccccccC
Confidence            358999999999999999999999999999887654            49999999998864       56689999999


Q ss_pred             eCCCEEEEeCCEEEECCEEcccc-------------------cc------------------------------------
Q 019676          234 KEGDVVEVREGKLIVNGVVRNED-------------------YI------------------------------------  258 (337)
Q Consensus       234 lPGDtV~i~dg~lyVNG~~~~e~-------------------~~------------------------------------  258 (337)
                      +|||+|.+.+...++++......                   +.                                    
T Consensus        74 ~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (247)
T d1b12a_          74 LPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKET  153 (247)
T ss_dssp             CTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEE
T ss_pred             CCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeeeeec
Confidence            99999999844333332210000                   00                                    


Q ss_pred             --------cc-------------CCCCCCCCEEecCCcEEEEcCCCCCCCCCCccCcccCCCeeEEEEEEEcCCC
Q 019676          259 --------LE-------------APSYNMTPITVPENSVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPQ  312 (337)
Q Consensus       259 --------~~-------------~p~~~~~~~~VP~g~yfVLGDNr~~S~DSRyfGpVp~~~IiGkv~~~lwP~~  312 (337)
                              ..             ........++||+||||||||||++|.|||+||+||+++|+|||+++|||++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~  228 (247)
T d1b12a_         154 LGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD  228 (247)
T ss_dssp             ETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC
T ss_pred             cCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECC
Confidence                    00             0112334689999999999999999999999999999999999999999965
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]} Back     information, alignment and structure