Citrus Sinensis ID: 019677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MEEEKAAAYYDELTRKGGGAARFKQGLGFSSSSTSENDAVPAKHTSFLSNFVRASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPREGRGGKRREVEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPEPDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHEHHHHHHccccccccEEEEEEccccccccHHHHHcHHHHHHHHHHcccEHEEHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEHHcHHHHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
MEEEKAAAYYDELtrkgggaarfkqglgfsssstsendavpakhtsflsnfvrasspttashpekpsqLESIQNKLkkkpseekpaqsrvstkdsdrdrdrdrershrdrgrdhrdrdrershrdrgrdhrdrdrdrgrsdrdrdgnrerEYKDRERerergrrrsvsppregrggkrrevekernskvdYSRLiegydhmtPAAIVKAKMKLQLAETAnkdetkgsgwerfefdkdaplddeeiEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDeamfgasavppsvssdsepepdssekkssdgdiatslFSENVLAKQQGSWRDRFRKA
Flexible Loop (DISEMBL)
MEEEKAAAYYDeltrkgggaarFKQGLGFSSSSTSENDAVPAKHTSFLSNFVRASSPttashpekpsqlESIQNKlkkkpseekpaqsrvstkdsdrdrdrdrershrdrgrdhrdrdrershrdrgrdhrdrdrdrgrsdrdrdgnrereykdrererergrrrsvsppregrggkrrevekernskvdysrliegydhMTPAAIVKAKMKLQLAETankdetkgsgwerfEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPEPDSSEKKSSDGDIATSlfsenvlakqqgswrdrfrka
Low Complexity Region (SEG)
MEEEKAAAYYDELTRKGGGAARFKQGLGFSSSSTSENDAVPAKHTSFLSNFVRASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKdsdrdrdrdrershrdrgrdhrdrdrershrdrgrdhrdrdrdrgrsdrdrdgnrereykdrererergrrrsvsppregrggkrrevekerNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLddeeieaaeddaaLVKHIGQSFRFSAIEARREEQIKAAHDEAMFgasavppsvssdsepepdssekkssdgdIATSLFSENVLAKQQGSWRDRFRKA
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************SRLIEGYDHMTPAAIVKAKM******************************************LVKHIGQSFRFS************************************************************************
Disordered Region (DISOPRED)
*****AA**YDELTRKGGG**RF***************************************************************************************************************************************************************************I***D*******************************RFEFDKDA**************ALVKHIGQSF******************EAMFGA******************************LFSENVLAKQQGSWR******
Disordered Region (DISEMBL)
MEEEKAAAYYDELTRKGGGAARFKQGLG*************AKHTSFLSNFVRA*************************************************************************************************************************************KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGA*************************DIATSLFSENVLAKQQGSWRDRFRKA
Disordered Region (DISPRO)
************LTRKG**************************************************************************************************************************************************************************KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAV**************************S*FSE*VLAKQQGSW*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEEKAAAYYDELTRKGGGAARFKQGLGFSSSSTSENDAVPAKHTSFLSNFVRASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPREGRGGKRREVEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPEPDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
297733850	274	unnamed protein product [Vitis vinifera]	0.489	0.602	0.693	2e-60
359491620	332	PREDICTED: uncharacterized protein LOC10	0.465	0.472	0.729	3e-60
255540811	324	Arginine/serine-rich coiled coil protein	0.459	0.478	0.719	4e-57
449469493	366	PREDICTED: uncharacterized protein LOC10	0.465	0.428	0.697	1e-54
357477295	370	hypothetical protein MTR_4g106550 [Medic	0.480	0.437	0.625	2e-49
224133404	244	predicted protein [Populus trichocarpa]	0.685	0.946	0.525	9e-49
297815992	320	predicted protein [Arabidopsis lyrata su	0.445	0.468	0.636	4e-46
42565712	328	uncharacterized protein [Arabidopsis tha	0.439	0.451	0.647	5e-44
242058375	353	hypothetical protein SORBIDRAFT_03g03154	0.433	0.413	0.549	4e-38
357135984	329	PREDICTED: uncharacterized protein LOC10	0.462	0.474	0.540	1e-37

>gi|297733850|emb|CBI15097.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 137/173 (79%), Gaps = 8/173 (4%)

Query: 173 GRGGKRRE------VEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKG 226
           G GG   E      V KE+N  VDY+RLI+GYD MTPA  VKAKMKLQL+ETA KD TKG
Sbjct: 102 GTGGVEAETGGVGWVGKEKNGGVDYARLIDGYDKMTPAERVKAKMKLQLSETAEKDATKG 161

Query: 227 --SGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMF 284
             SGWERFEF+KDAPLDDEEIEAAEDDA LVKH+GQSFRFSA+E RREEQIKAAHDEA+F
Sbjct: 162 MGSGWERFEFNKDAPLDDEEIEAAEDDAMLVKHVGQSFRFSAVETRREEQIKAAHDEAIF 221

Query: 285 GASAVPPSVSSDSEPEPDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
           G S +PPS  SD+EPE ++  K+S++  + TSL SE VLAKQQGSWRDR R+ 
Sbjct: 222 GGSTIPPSNFSDNEPEVENDTKESNESSLGTSLISEKVLAKQQGSWRDRARRV 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491620|ref|XP_002280437.2| PREDICTED: uncharacterized protein LOC100258813 [Vitis vinifera]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 133/159 (83%), Gaps = 2/159 (1%)

Query: 181 VEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKG--SGWERFEFDKDA 238
           V KE+N  VDY+RLI+GYD MTPA  VKAKMKLQL+ETA KD TKG  SGWERFEF+KDA
Sbjct: 174 VGKEKNGGVDYARLIDGYDKMTPAERVKAKMKLQLSETAEKDATKGMGSGWERFEFNKDA 233

Query: 239 PLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSE 298
           PLDDEEIEAAEDDA LVKH+GQSFRFSA+E RREEQIKAAHDEA+FG S +PPS  SD+E
Sbjct: 234 PLDDEEIEAAEDDAMLVKHVGQSFRFSAVETRREEQIKAAHDEAIFGGSTIPPSNFSDNE 293

Query: 299 PEPDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
           PE ++  K+S++  + TSL SE VLAKQQGSWRDR R+ 
Sbjct: 294 PEVENDTKESNESSLGTSLISEKVLAKQQGSWRDRARRV 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540811|ref|XP_002511470.1| Arginine/serine-rich coiled coil protein, putative [Ricinus communis] gi|223550585|gb|EEF52072.1| Arginine/serine-rich coiled coil protein, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 129/157 (82%), Gaps = 2/157 (1%)

Query: 183 KERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKG--SGWERFEFDKDAPL 240
           KE+N  VDYS+LI GY++MT A  VKA+MK QL ETA KD TKG  SGWERFEFDKDAPL
Sbjct: 166 KEKNGGVDYSKLIHGYENMTAAEKVKARMKFQLNETAEKDPTKGMGSGWERFEFDKDAPL 225

Query: 241 DDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPE 300
           D+EEIEAAEDDAALVKHIGQSFRFSA+EAR+ EQIK AHDEAMFG  A+  S+ SD+EPE
Sbjct: 226 DNEEIEAAEDDAALVKHIGQSFRFSAVEARKNEQIKVAHDEAMFGVPAIRGSMVSDNEPE 285

Query: 301 PDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
             ++EK+S+  D+A  L SE VLAKQQGSWRDR RKA
Sbjct: 286 VVNNEKESTKTDVAAGLLSEKVLAKQQGSWRDRARKA 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469493|ref|XP_004152454.1| PREDICTED: uncharacterized protein LOC101218261 [Cucumis sativus] gi|449487790|ref|XP_004157802.1| PREDICTED: uncharacterized LOC101218261 [Cucumis sativus]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 130/162 (80%), Gaps = 5/162 (3%)

Query: 181 VEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSG--WERFEFDKDA 238
           VE+++   VDYSRLIEGYD M+PA  VKAKMKLQLAETA  D+TKG+G  WERFEFDKDA
Sbjct: 205 VERQKTEGVDYSRLIEGYDMMSPAERVKAKMKLQLAETARMDDTKGTGPGWERFEFDKDA 264

Query: 239 PLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSE 298
           PLDDEEIEAAEDDA LVKHIGQSFRFSAIEAR+EEQIKAAHDEAMFGA       ++D E
Sbjct: 265 PLDDEEIEAAEDDATLVKHIGQSFRFSAIEARKEEQIKAAHDEAMFGAPVRQLLSTTDDE 324

Query: 299 PEPDSSE---KKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
            + ++     K+S D  +AT+L SE ++AKQQGSWRDR RKA
Sbjct: 325 DKVEAENERVKESCDSGMATNLLSEKIIAKQQGSWRDRARKA 366

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477295|ref|XP_003608933.1| hypothetical protein MTR_4g106550 [Medicago truncatula] gi|355509988|gb|AES91130.1| hypothetical protein MTR_4g106550 [Medicago truncatula]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 131/163 (80%), Gaps = 1/163 (0%)

Query: 176 GKRREVEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFD 235
           GK  E+ K +N  VDY++LI GYD+M PA  VKAKMKLQL+ETA +D  +G GWERFEF+
Sbjct: 208 GKGSEMRKGKNVGVDYAKLIHGYDNMAPAERVKAKMKLQLSETAARDSDRGVGWERFEFN 267

Query: 236 KDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFG-ASAVPPSVS 294
           KDAPLDDEE+E AEDDA+LVKHIGQSFRFSA+E++RE+QI+AAHDEAMFG  +  PP+ S
Sbjct: 268 KDAPLDDEEVEGAEDDASLVKHIGQSFRFSAVESKREDQIQAAHDEAMFGAPAPPPPTSS 327

Query: 295 SDSEPEPDSSEKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
           +DSEPE ++ ++  +  D+ +SL SE VLA+ +GSWRDR R+ 
Sbjct: 328 TDSEPERENEKEVDNKKDLVSSLLSETVLARPKGSWRDRVRQT 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133404|ref|XP_002321559.1| predicted protein [Populus trichocarpa] gi|222868555|gb|EEF05686.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/259 (52%), Positives = 160/259 (61%), Gaps = 28/259 (10%)

Query: 1   MEEEKAAAYYDELTRKGGGAARFKQGLGFSS-----SSTSENDAVPAKHTSFLSNFVRAS 55
           MEEEKAAAYY+ELTRKG GAARFKQGLGFS+     +      A+P+   SFLSNFV+AS
Sbjct: 1   MEEEKAAAYYEELTRKGQGAARFKQGLGFSANKDVAAPPPRGSALPSSTASFLSNFVKAS 60

Query: 56  SPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHR 115
           SPT AS+ E+ +QLESIQNKLKKKP +E           S+R R       HR R R   
Sbjct: 61  SPTQASNLERQAQLESIQNKLKKKPKDEA----------SERSRRESGHHRHRSRSRSRE 110

Query: 116 DRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPREGRG 175
              R+RS       +  R       +R RDG R R  +   R R RG       PREGR 
Sbjct: 111 RNHRKRSRSKSRERNYRRRSRSRSRERYRDGERRRNRRLETRSRSRGL-----SPREGRR 165

Query: 176 GKRR---EVE-----KERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGS 227
            ++R   +VE     KE+N  +DYSRLIEGY+ MTPA  VKA+MKLQL ETA KDE  GS
Sbjct: 166 SEKRRGDDVERERAGKEKNGSIDYSRLIEGYEKMTPAERVKARMKLQLNETAKKDEGMGS 225

Query: 228 GWERFEFDKDAPLDDEEIE 246
           GWERF F+KDAPLDDEE+E
Sbjct: 226 GWERFVFNKDAPLDDEEVE 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815992|ref|XP_002875879.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321717|gb|EFH52138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 119/154 (77%), Gaps = 4/154 (2%)

Query: 188 KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEI-E 246
           K+DYSRLI GYD ++ A  VKAKMKLQL ETA +D +KG+GWERFEFDKDAP+DDEE+ E
Sbjct: 167 KIDYSRLINGYDELSAAEKVKAKMKLQLDETAEQDTSKGAGWERFEFDKDAPVDDEEVEE 226

Query: 247 AAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPEPDSSEK 306
             +DDAALVK +GQSFRFSAIEA+REEQ+KAAHDEAMFGA A     ++  +   D++  
Sbjct: 227 GTDDDAALVKRMGQSFRFSAIEAKREEQLKAAHDEAMFGAPAGQTPTNNTDDNVTDTTYV 286

Query: 307 KSSDGDI---ATSLFSENVLAKQQGSWRDRFRKA 337
           K  +G+    A SL SE V+AKQQGSWRDR RK+
Sbjct: 287 KDDEGESNSGAISLLSEKVIAKQQGSWRDRARKS 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565712|ref|NP_190395.3| uncharacterized protein [Arabidopsis thaliana] gi|34365691|gb|AAQ65157.1| At3g48120 [Arabidopsis thaliana] gi|51971064|dbj|BAD44224.1| putative protein [Arabidopsis thaliana] gi|51971096|dbj|BAD44240.1| putative protein [Arabidopsis thaliana] gi|332644849|gb|AEE78370.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 118/156 (75%), Gaps = 8/156 (5%)

Query: 188 KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEI-E 246
           K DYSRLI+GYD M+ A  VKAKMKLQL ETA KD +KG+GWERFEFDK+AP+DDEE+ E
Sbjct: 175 KPDYSRLIKGYDEMSAAEKVKAKMKLQLDETAEKDTSKGAGWERFEFDKEAPVDDEELEE 234

Query: 247 AAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASA--VPPSVSSDSEPEPDSS 304
            A+DDAALVK +GQS+RFSAIEA+REEQ+KAAHDEAMFG      P   + D   E  + 
Sbjct: 235 GADDDAALVKRMGQSYRFSAIEAKREEQLKAAHDEAMFGVPTGQTPTENTGDDVTEITNV 294

Query: 305 ---EKKSSDGDIATSLFSENVLAKQQGSWRDRFRKA 337
              E +S+ G  A SL SE VLAKQQGSWRDR RK+
Sbjct: 295 KDDEGESNSG--AISLLSEKVLAKQQGSWRDRARKS 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242058375|ref|XP_002458333.1| hypothetical protein SORBIDRAFT_03g031540 [Sorghum bicolor] gi|241930308|gb|EES03453.1| hypothetical protein SORBIDRAFT_03g031540 [Sorghum bicolor]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 115/162 (70%), Gaps = 16/162 (9%)

Query: 188 KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGS---GWERFEFDKDAPLD--D 242
           K+DYSRLIEGYD MTPA  VKAKMKLQLAETA KD   G+   GWERF+F+KDAPLD  +
Sbjct: 188 KMDYSRLIEGYDKMTPAERVKAKMKLQLAETAAKDSNLGTATVGWERFQFNKDAPLDEDN 247

Query: 243 EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGASAVPPSVSSDSEPEPD 302
           +++E A DDA+LVK+IG+SFR SA+E++ E++I+ AHDEA+FG   VP     D+E   D
Sbjct: 248 DDVEVANDDASLVKNIGKSFRLSAVESKHEDKIRDAHDEAIFG---VPTISFVDTETGGD 304

Query: 303 SSEKKSSDGDI--------ATSLFSENVLAKQQGSWRDRFRK 336
             +    DG +        ++SL S+ VLA Q+GSWRDR +K
Sbjct: 305 ELKTNHEDGKVEDIEADEPSSSLISDKVLAMQKGSWRDRAQK 346

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135984|ref|XP_003569586.1| PREDICTED: uncharacterized protein LOC100845593 [Brachypodium distachyon]

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/172 (54%), Positives = 122/172 (70%), Gaps = 16/172 (9%)

Query: 174 RGGKRREVEKERNSKVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGS---GWE 230
           RGGK          KVDYSR I+GYD MTPA  VKAKMKLQL+ETA+KD T G+   GWE
Sbjct: 158 RGGKD-------GGKVDYSRHIDGYDKMTPAERVKAKMKLQLSETASKDSTLGNATVGWE 210

Query: 231 RFEFDKDAPLD--DEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDEAMFGA-- 286
           RFEF+KDAPLD  D ++EAA DDA+LVKHIG+SFR SA+E++ E  ++ AHDEAMFG   
Sbjct: 211 RFEFNKDAPLDEDDADVEAAHDDASLVKHIGKSFRLSAVESKHENLVRDAHDEAMFGVPM 270

Query: 287 SAVPPSVSSDSEPEPDSSEKKSSDGDI--ATSLFSENVLAKQQGSWRDRFRK 336
           S++  + +S+ E + +   KK+ D +   ++SL S+ VLA Q+ SWR+R +K
Sbjct: 271 SSIVGTEASEDELKTNYEAKKAEDVETQPSSSLISDKVLAMQKVSWRERIQK 322

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2097900	328	AT3G48120 "AT3G48120" [Arabido	0.445	0.457	0.545	3.3e-57

TAIR|locus:2097900 AT3G48120 "AT3G48120" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
 Identities = 84/154 (54%), Positives = 95/154 (61%)

Query:   188 KVDYSRLIEGYDHMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLXXXXXXX 247
             K DYSRLI+GYD M+ A  VKAKMKLQL ETA KD +KG+GWERFEFDK+AP+       
Sbjct:   175 KPDYSRLIKGYDEMSAAEKVKAKMKLQLDETAEKDTSKGAGWERFEFDKEAPVDDEELEE 234

Query:   248 XXXX-XXLVKHIGQSFRFSAIEARREEQIKAAHDEAMF---XXXXXXXXXXXXXXXXXXX 303
                    LVK +GQS+RFSAIEA+REEQ+KAAHDEAMF                      
Sbjct:   235 GADDDAALVKRMGQSYRFSAIEAKREEQLKAAHDEAMFGVPTGQTPTENTGDDVTEITNV 294

Query:   304 XXXXXXXXXIATSLFSENVLAKQQGSWRDRFRKA 337
                       A SL SE VLAKQQGSWRDR RK+
Sbjct:   295 KDDEGESNSGAISLLSEKVLAKQQGSWRDRARKS 328

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-11
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	8e-11
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	9e-07
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	3e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-06
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	9e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-05
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	1e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	0.002
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	0.003

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 1/102 (0%)

Query: 93  KDSDRDRDRDRERSHRDRGRDHRDRDRERSH-RDRGRDHRDRDRDRGRSDRDRDGNRERE 151
           +D + DR+R++ R         R R R R   R R R  R R+R      R RD  R   
Sbjct: 1   RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60

Query: 152 YKDRERERERGRRRSVSPPREGRGGKRREVEKERNSKVDYSR 193
              R       RR    P R  R  +  E  + R      S 
Sbjct: 61  RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSN 102

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 74  NKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDR 133
           ++   +  E+   + R  + +  R R RDR    R R R  R R+R      R RD R  
Sbjct: 2   DEEPDREREKSRGRDRDRSSERPRRRSRDRS---RFRDRHRRSRERSYREDSRPRDRRRY 58

Query: 134 DRDRGRSDRD------RDGNREREYKDRERERERGRRRSVSPPREGRGGKRREVEKER 185
           D    RS R       RD  R R    R  E+ R R R  SP  + R   ++    + 
Sbjct: 59  DSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDI 116

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 2/141 (1%)

Query: 53  RASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGR 112
           R ++       E+P+         + +  E    + R   +D   + +R       +RGR
Sbjct: 139 RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGR 198

Query: 113 DHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPRE 172
           D  DRDR        R      RD G     R     R+ +  +   +RG R       E
Sbjct: 199 DGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDD--GE 256

Query: 173 GRGGKRREVEKERNSKVDYSR 193
           GRGG+R    ++R+ +     
Sbjct: 257 GRGGRRGRRFRDRDRRGRRGG 277

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 87  QSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSH---RDRGRDHRDRDRDRGRSDRD 143
           +        DRDR   RE+  R   R  RD    R     RDR     D +R+       
Sbjct: 193 REERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDG 252

Query: 144 RDGNREREYK-DRERERERGRRRSVSPPREGRGGKRREVE 182
            DG      +  R R+R+R  RR       G GG  RE E
Sbjct: 253 DDGEGRGGRRGRRFRDRDRRGRRG------GDGGNEREPE 286

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 54.9 bits (133), Expect = 3e-08
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 1/135 (0%)

Query: 52  VRASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRG 111
             A+    A+  E  S  E+ Q + +++   E   +          ++     R+     
Sbjct: 105 APAARAAAAAAAEAASAPEAAQAR-ERRERGEAARRGAARKAGEGGEQPATEARADAAER 163

Query: 112 RDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPR 171
            +  +RD  R   DR     + +R       +R  + +   +   RE+   R        
Sbjct: 164 TEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDG 223

Query: 172 EGRGGKRREVEKERN 186
             R G+RR  ++   
Sbjct: 224 GDRRGRRRRRDRRDA 238

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 78  KKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDR 137
           +    +   +     +   R+    R+   R   R  RDR   R   D   D  DRD D 
Sbjct: 196 RGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-DDNREDRGDRDGDD 254

Query: 138 GRSDRDRDGNREREYKDRERERERGRRRSVSPPRE 172
           G     R G R R   DR+R   RG         E
Sbjct: 255 GEGRGGRRGRRFR---DRDRRGRRGGDGGNEREPE 286

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 5/141 (3%)

Query: 53  RASSPTTASHPEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGR 112
             ++P   +     ++  S     + +   E+   +R            ++  +      
Sbjct: 102 AEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAAR-KAGEGGEQPATEARADA 160

Query: 113 DHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERERGRRRSVSPPRE 172
             R  + ER  R R  D  DR  +  R +R R   R R+      +R+R  RR     RE
Sbjct: 161 AERTEEEERDERRRRGDREDRQAEAERGERGRREERGRD----GDDRDRRDRREQGDRRE 216

Query: 173 GRGGKRREVEKERNSKVDYSR 193
            RG +     + R  + D   
Sbjct: 217 ERGRRDGGDRRGRRRRRDRRD 237

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 34/81 (41%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 97  RDRDRDRERSH-RDRGRD---HRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREY 152
           R RDR+R R     R  D    R R R RS RDR R  RDRD  RGR  R R  +  R Y
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRERSRRRSRS-RDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59

Query: 153 KDRERER-ERGRRRSVSPPRE 172
           + R      R  RRS    +E
Sbjct: 60  RPRGDRSYRRDDRRSGRNTKE 80

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 20/88 (22%), Positives = 28/88 (31%)

Query: 73  QNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRD 132
            ++ ++   E+   +     +D    R R R R  RD   D    DR     D G     
Sbjct: 201 DDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260

Query: 133 RDRDRGRSDRDRDGNREREYKDRERERE 160
           R   R R    R         +RE E  
Sbjct: 261 RRGRRFRDRDRRGRRGGDGGNEREPELR 288

Length = 672

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 18/133 (13%)

Query: 52  VRASSPTTASHPEKPSQLESIQNKLKK---KPSEEKPAQSRVSTKDSDRDRDRDRERSHR 108
             A     A+ P +P  L      LK       E KP +      ++  +R +DR +  +
Sbjct: 552 AAAPKAAAATPPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKPERQQDRRKPRQ 611

Query: 109 DRGRDHRDRDRERSHRDRGRDHRDRDRDR---------GRSDRDRDGN------REREYK 153
           +  RD  +R   R +R R     +R+ +R             R+          R ++ +
Sbjct: 612 NNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQ 671

Query: 154 DRERERERGRRRS 166
            +   RER RRR+
Sbjct: 672 QQAPRRERQRRRN 684

Length = 1068

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 89  RVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNR 148
           R   +     RD   + +  DRG    D    R    RGR  R RDRDR    R  DG  
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG-GRRGR--RFRDRDRRG-RRGGDGGN 281

Query: 149 EREYKDRERE 158
           ERE + RE +
Sbjct: 282 EREPELREDD 291

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 4/175 (2%)

Query: 20  AARFKQGLGFSSSSTSENDAVPAKHTSFLSNFVRASSPTTASHPEKPSQLESIQNKLKKK 79
           A +  +G G ++++ +      A   +  +      +   A+         +   +    
Sbjct: 54  AIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAA 113

Query: 80  PSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRGR 139
            + E  +    +     R+R     R    +  +  ++    +  D      + +RD  R
Sbjct: 114 AAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERR 173

Query: 140 SDRDRDGNRER----EYKDRERERERGRRRSVSPPREGRGGKRREVEKERNSKVD 190
              DR+  +      E   RE     G  R     RE    +     ++   +  
Sbjct: 174 RRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRG 228

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 77  KKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRD 136
           + +  E    ++     D  R+R R R RS RDR R  RDRD  R  R R R        
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRERSRRRSRS-RDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59

Query: 137 RGRSDR--DRDGNREREYKDRERERERGRRRSV 167
           R R DR   RD  R                R+V
Sbjct: 60  RPRGDRSYRRDDRRSGRNTKEPLTEAERDDRTV 92

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 131 RDRDRDRGRS---DRDRDGNREREYKDRERERERGRRRSVSPPREGRGGKRREVEKERNS 187
           R RDR+RGR     R  D  RER  + R R R+R RRR       GR G+ R     R  
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRERS-RRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYY 59

Query: 188 K 188
           +
Sbjct: 60  R 60

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 131 RDRDRDRGRSD-RDRDGNREREYKDRERERERGRRRSVSPPREGRGGKRREVEKERN--S 187
           RD + DR R   R RD +R  E   R R R R R R     R  R    RE  + R+   
Sbjct: 1   RDEEPDREREKSRGRDRDRSSE---RPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRR 57

Query: 188 KVDYSRLIEGYDH 200
               S     Y  
Sbjct: 58  YDSRSPRSLRYSS 70

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.53
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	99.29
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	99.25
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.01
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	98.59
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.29
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.13
KOG0796	319	consensus Spliceosome subunit [RNA processing and	98.01
KOG0147	549	consensus Transcriptional coactivator CAPER (RRM s	96.92
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	96.62
PF08648	180	DUF1777: Protein of unknown function (DUF1777); In	96.48
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	95.58
PF06495	182	Transformer: Fruit fly transformer protein; InterP	95.2
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	94.87
KOG4368	757	consensus Predicted RNA binding protein, contains	94.21
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	93.21
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	93.09
KOG3263	196	consensus Nucleic acid binding protein [General fu	92.85
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	92.38
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	92.34
KOG0108	435	consensus mRNA cleavage and polyadenylation factor	92.26
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	92.08
KOG0126	219	consensus Predicted RNA-binding protein (RRM super	91.93
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	91.44
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	91.42
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	91.16
COG0724	306	RNA-binding proteins (RRM domain) [General functio	90.61
KOG0120	500	consensus Splicing factor U2AF, large subunit (RRM	90.56
PLN03120	260	nucleic acid binding protein; Provisional	90.05
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	89.48
KOG0124	544	consensus Polypyrimidine tract-binding protein PUF	89.01
KOG0796	319	consensus Spliceosome subunit [RNA processing and	88.49
KOG4368	757	consensus Predicted RNA binding protein, contains	88.32
KOG0131	203	consensus Splicing factor 3b, subunit 4 [RNA proce	85.54
KOG0107	195	consensus Alternative splicing factor SRp20/9G8 (R	85.37
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	84.68
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	83.49
KOG4454	267	consensus RNA binding protein (RRM superfamily) [G	83.15

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.53  E-value=1e-14  Score=145.68  Aligned_cols=69  Identities=19%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             ccccCCcccccccccCCccc--hhhhh------hccCCceeEEecCCcccchhhhhhhHhh--HHHHhhhhcc-CCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLD--DEEIE------AAEDDAALVKHIGQSFRFSAIEARREEQ--IKAAHDEAMF-GASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealld--N~~Le------aie~Dpvl~~qInqsk~fA~vEFKseet--valA~Dgi~f-G~ptvv  290 (337)
                      .+.|||||||+.++++.|.+  +.-+.      ..++.+|+.++++.+++||||||.+.+.  .+|++++++| |.++.|
T Consensus       175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v  254 (509)
T TIGR01642       175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI  254 (509)
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence            45699999999999998888  32221      2247899999999999999999999544  5566777764 445544

Members of this subfamily are found in plants, metazoa and fungi.

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=99.29  E-value=1.4e-13  Score=135.32  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             CCCCccccccccchhccCCCCCCCC----CCChhhHHHHHhhhcCCCCCCCCccccccCCcCCCccccccccccccC
Q 019677           38 DAVPAKHTSFLSNFVRASSPTTASH----PEKPSQLESIQNKLKKKPSEEKPAQSRVSTKDSDRDRDRDRERSHRDR  110 (337)
Q Consensus        38 ~~~~s~~~sfls~~~~a~~l~k~~~----~~~~~~l~s~~~~l~~~~~~~~~~~~r~~~r~r~r~rsR~r~~~~r~r  110 (337)
                      +|....|+++|++++|||.|||||+    ++|+++|++|++|||+|++++|.-.. .++|+|+|..||+|+.+.|+.
T Consensus       383 dASaGDy~~AiETllTAI~lIKqSrv~~DdRCrvLissL~dcLhgiesksys~g~-kr~rsrert~srsre~srrh~  458 (498)
T KOG4849|consen  383 DASAGDYKGAIETLLTAIQLIKQSRVGHDDRCRVLISSLEDCLHGIESKSYSLGN-KRHRSRERTTSRSREISRRHF  458 (498)
T ss_pred             ccccccchhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhcccccccc-cccccccccchhhHHHHHHHh
Confidence            4444499999999999999999998    99999999999999999999998866 467888888899998776555

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=99.25  E-value=7.3e-12  Score=128.19  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             CCcccccCCCCCCCh---HHHHHHHHhhhhcccc----------------------ccccccCCcccccccccCCccc--
Q 019677          189 VDYSRLIEGYDHMTP---AAIVKAKMKLQLAETA----------------------NKDETKGSGWERFEFDKDAPLD--  241 (337)
Q Consensus       189 ~d~~~~i~GfE~~TP---AEkvkar~q~QL~~tA----------------------~adr~L~VGnipf~~tEealld--  241 (337)
                      --|....+|||+.||   ..+..+.+++|.++..                      .++..+|||++||++++++++.  
T Consensus       117 ~~~~~~~~~fe~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~  196 (500)
T KOG0120|consen  117 SLWDVPPEGFETITPDGAKLYKNFNATGQVPGDLSNPKKSLKLPQLPTPPMDSQATRQARRLYVGNIPFTSNEESMMSFF  196 (500)
T ss_pred             hhhcCCCCCCcccCchhhhhhhhccccCCCCCCccccccccccccCCCCccCcchhhhhhhhcccccCCccCcHhhhhhh
Confidence            357888999999999   4444456666666551                      3446689999999999999888  


Q ss_pred             h-----hhhhhcc-CCceeEEecCCcccchhhhhhh--HhhHHHHhhhhccCCcc
Q 019677          242 D-----EEIEAAE-DDAALVKHIGQSFRFSAIEARR--EEQIKAAHDEAMFGASA  288 (337)
Q Consensus       242 N-----~~Leaie-~Dpvl~~qInqsk~fA~vEFKs--eetvalA~Dgi~fG~pt  288 (337)
                      |     .+|++.+ +++|++|++|+.++|+++||++  +++.+|++++++|.+..
T Consensus       197 ~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~  251 (500)
T KOG0120|consen  197 NSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRP  251 (500)
T ss_pred             hhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCC
Confidence            3     2566666 7999999999999999999999  77889999999986533

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.01  E-value=9.6e-11  Score=115.92  Aligned_cols=80  Identities=10%  Similarity=0.027  Sum_probs=51.1

Q ss_pred             cccccCCcccccccccCCccchh-hh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHh--h-hhccCCcccCCCCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--D-EAMFGASAVPPSVSS  295 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--D-gi~fG~ptvv~~t~~  295 (337)
                      ....|||+|||+.++++.|.+.. .+ .+....-+.....+.+++||||+|.+.+.+..|+  . ..++|.+++|+.+..
T Consensus        88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~  167 (457)
T TIGR01622        88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA  167 (457)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence            34569999999999988876621 11 1111111111235678999999999977665554  4 445778888887765


Q ss_pred             CCCCC
Q 019677          296 DSEPE  300 (337)
Q Consensus       296 ~~~~~  300 (337)
                      +.+..
T Consensus       168 ~~~~~  172 (457)
T TIGR01622       168 EKNRA  172 (457)
T ss_pred             hhhhh
Confidence            55443

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=98.59  E-value=3.1e-08  Score=101.87  Aligned_cols=94  Identities=13%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             CCCCCCChHHHHH-HHHhhhhccccccccccCCcccccccccCCccchhhhhhccCCceeEEe-cCCcccchhhhhhhHh
Q 019677          196 EGYDHMTPAAIVK-AKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH-IGQSFRFSAIEARREE  273 (337)
Q Consensus       196 ~GfE~~TPAEkvk-ar~q~QL~~tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q-Inqsk~fA~vEFKsee  273 (337)
                      ..-+.++|.|++. ..+++||+..+.... |    ++|...-.. +.  ++      -+|.++ ...+|+++||||.++.
T Consensus       167 ~~~~~l~~eERd~Rtvf~~qla~r~~pRd-L----~efFs~~gk-Vr--dV------riI~Dr~s~rskgi~Yvef~D~~  232 (549)
T KOG0147|consen  167 EASRILSPEERDQRTVFCMQLARRNPPRD-L----EEFFSIVGK-VR--DV------RIIGDRNSRRSKGIAYVEFCDEQ  232 (549)
T ss_pred             cccccCCchHHhHHHHHHHHHhhcCCchh-H----HHHHHhhcC-cc--ee------EeeccccchhhcceeEEEEeccc
Confidence            3446688888887 789999996654322 1    222111111 10  11      122222 5679999999999999


Q ss_pred             hHHHHhh---hhccCCcccCCCCCCCCCCCCCC
Q 019677          274 QIKAAHD---EAMFGASAVPPSVSSDSEPEPDS  303 (337)
Q Consensus       274 tvalA~D---gi~fG~ptvv~~t~~~~~~~~~~  303 (337)
                      +|.+|+.   +.+||.|++|++++++++..++.
T Consensus       233 sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~  265 (549)
T KOG0147|consen  233 SVPLAIALSGQRLLGVPVIVQLSEAEKNRAANA  265 (549)
T ss_pred             chhhHhhhcCCcccCceeEecccHHHHHHHHhc
Confidence            9988864   77799999999999999985544

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.29  E-value=8.2e-07  Score=89.13  Aligned_cols=69  Identities=12%  Similarity=-0.021  Sum_probs=41.4

Q ss_pred             cccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHh---hhhccCC-cccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFGA-SAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG~-ptvv~  291 (337)
                      ..|||||||+.++++.|.+. ..+-.+.. ..+....++.+++||||+|.+.+.+..|+   ++..|++ .+.|.
T Consensus       296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~  370 (509)
T TIGR01642       296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ  370 (509)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence            35889999998888876652 11111111 11111135778999999999977766555   4555553 44443

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.13  E-value=1e-06  Score=87.43  Aligned_cols=64  Identities=17%  Similarity=0.046  Sum_probs=41.7

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+. ..+-     +|..|.      .++.++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus       187 ~~l~v~nl~~~~te~~l~~~f~~~G-----~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~  261 (457)
T TIGR01622       187 LKLYVGNLHFNITEQELRQIFEPFG-----DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG  261 (457)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence            56899999999998876662 1111     122222      3478899999999977766664   4544 44455554

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=98.01  E-value=6.5e-07  Score=87.58  Aligned_cols=32  Identities=28%  Similarity=0.195  Sum_probs=27.2

Q ss_pred             cccccccchhccCCCCCCCC------------CCChhhHHHHHhhh
Q 019677           43 KHTSFLSNFVRASSPTTASH------------PEKPSQLESIQNKL   76 (337)
Q Consensus        43 ~~~sfls~~~~a~~l~k~~~------------~~~~~~l~s~~~~l   76 (337)
                      -||+||+.++++++|  ++|            +++..+|....++.
T Consensus       191 VCGa~L~~~D~d~Rl--aDHf~GKlHlGy~~iR~~l~eLk~~~~~~  234 (319)
T KOG0796|consen  191 VCGAFLSVNDADRRL--ADHFGGKLHLGYVLIREKLAELKKEKAKR  234 (319)
T ss_pred             hhhHHHhccchHHHH--HHhhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence            799999999999999  999            77777777666665

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]

Probab=96.92  E-value=0.0011  Score=69.03  Aligned_cols=53  Identities=25%  Similarity=0.205  Sum_probs=36.9

Q ss_pred             ccCCcccccccccCCccchh----hhhhccCCceeEEe--cCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDDE----EIEAAEDDAALVKH--IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN~----~Leaie~Dpvl~~q--Inqsk~fA~vEFKseetvalA~D  280 (337)
                      +|||||+=|.++++.+....    .|+.+    .+.++  ++++|+|+|++|...+...-|+.
T Consensus       280 rl~vgnLHfNite~~lr~ifepfg~Ie~v----~l~~d~~tG~skgfGfi~f~~~~~ar~a~e  338 (549)
T KOG0147|consen  280 RLYVGNLHFNITEDMLRGIFEPFGKIENV----QLTKDSETGRSKGFGFITFVNKEDARKALE  338 (549)
T ss_pred             hhhhcccccCchHHHHhhhccCcccceee----eeccccccccccCcceEEEecHHHHHHHHH
Confidence            38999999999998766521    12211    11222  89999999999999777666644

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=96.62  E-value=0.0011  Score=67.11  Aligned_cols=16  Identities=56%  Similarity=0.771  Sum_probs=8.0

Q ss_pred             hhhhhccCCCCCCCCC
Q 019677          156 ERERERGRRRSVSPPR  171 (337)
Q Consensus       156 ~r~r~r~rsr~~sp~~  171 (337)
                      ++.+.|++|+++||+.
T Consensus       353 errrRRSrSrsRspR~  368 (479)
T KOG4676|consen  353 ERRRRRSRSRSRSPRT  368 (479)
T ss_pred             hhhhhhccccccCCCC
Confidence            3344445555555544

>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function

Probab=96.48  E-value=0.0041  Score=55.69  Aligned_cols=15  Identities=20%  Similarity=0.322  Sum_probs=10.3

Q ss_pred             CcccccccccCCccc
Q 019677          227 SGWERFEFDKDAPLD  241 (337)
Q Consensus       227 VGnipf~~tEealld  241 (337)
                      +|+.-|+.|+...|.
T Consensus       133 MGf~gF~TTKgK~v~  147 (180)
T PF08648_consen  133 MGFGGFGTTKGKKVP  147 (180)
T ss_pred             hcccccccCCCCccC
Confidence            555677777777666

Some of the proteins are putative nucleic acid binding proteins.

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=95.58  E-value=0.0075  Score=61.26  Aligned_cols=13  Identities=54%  Similarity=0.590  Sum_probs=5.6

Q ss_pred             cCCCCCCCCCCCC
Q 019677          162 GRRRSVSPPREGR  174 (337)
Q Consensus       162 ~rsr~~sp~~~~~  174 (337)
                      .+.|++|..+..+
T Consensus       355 rrRRSrSrsRspR  367 (479)
T KOG4676|consen  355 RRRRSRSRSRSPR  367 (479)
T ss_pred             hhhhccccccCCC
Confidence            3444444444333

>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly)

Probab=95.20  E-value=0.017  Score=52.88  Aligned_cols=19  Identities=5%  Similarity=-0.178  Sum_probs=15.6

Q ss_pred             CCCcccccCCCCCCChHHH
Q 019677          188 KVDYSRLIEGYDHMTPAAI  206 (337)
Q Consensus       188 ~~d~~~~i~GfE~~TPAEk  206 (337)
                      .++|.++..||+|+++...
T Consensus       116 ~~yv~VPp~gf~~~y~~~~  134 (182)
T PF06495_consen  116 TKYVDVPPPGFEYAYGWPP  134 (182)
T ss_pred             eeeccCCCcccccccCCCC
Confidence            3689999999999988543

The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=94.87  E-value=0.005  Score=53.75  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=44.8

Q ss_pred             ccccCCcccccccccCCccch-hhhhhcc-CCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie-~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~  292 (337)
                      ...|||+|||+.++++.|.+. ..+-.+. ...+....+++.++||||+|.+.+.+..|++   +.. -|.++.|..
T Consensus        34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~  110 (144)
T PLN03134         34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP  110 (144)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence            346999999999998887662 1221111 1111122356789999999999888877764   343 455555543

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=94.21  E-value=0.1  Score=55.58  Aligned_cols=37  Identities=11%  Similarity=-0.071  Sum_probs=22.5

Q ss_pred             ccccccchhccCCCCCCCC-----CCChh-------hHHHHHhhhcCCCCC
Q 019677           44 HTSFLSNFVRASSPTTASH-----PEKPS-------QLESIQNKLKKKPSE   82 (337)
Q Consensus        44 ~~sfls~~~~a~~l~k~~~-----~~~~~-------~l~s~~~~l~~~~~~   82 (337)
                      +...+.-|+.+++|  -++     .+|.+       .+.-|.+|+--+-+.
T Consensus       518 ~dlpaglm~pl~Rl--ed~~yk~ldpkdirlp~p~p~sErl~~aveAfys~  566 (757)
T KOG4368|consen  518 FDLPAGLMAPLVRL--EDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSP  566 (757)
T ss_pred             cccchhcccccccc--cccccccCCHhhccCCCCCChHHHHHHHHHHhhcc
Confidence            45556666666776  444     44444       467788888776543

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=93.21  E-value=0.02  Score=56.89  Aligned_cols=68  Identities=10%  Similarity=0.028  Sum_probs=45.5

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCc
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAM-FGAS  287 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~-fG~p  287 (337)
                      ......|+|+|||+.++++.|.+. ..+-     +|+.|      .+..+++||||+|.+++.+..|+   +++. ++-+
T Consensus       104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G-----~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~  178 (346)
T TIGR01659       104 NNSGTNLIVNYLPQDMTDRELYALFRTIG-----PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR  178 (346)
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence            344567999999999999987662 1111     12222      35678899999999977766665   4444 5566


Q ss_pred             ccCC
Q 019677          288 AVPP  291 (337)
Q Consensus       288 tvv~  291 (337)
                      +.|.
T Consensus       179 i~V~  182 (346)
T TIGR01659       179 LKVS  182 (346)
T ss_pred             eeee
Confidence            6554

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PF00076 RRM_1: RNA recognition motif

Probab=93.09  E-value=0.013  Score=42.48  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=38.8

Q ss_pred             cCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      |||+|+|..++++.|.+. .....+ ....+.. ..+...++|||+|.+.+.+..|+   ++..+++
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~   66 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING   66 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhc-ccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence            589999999999887772 112111 0111111 24578999999999977766664   4655554

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG3263 consensus Nucleic acid binding protein [General function prediction only]

Probab=92.85  E-value=0.029  Score=51.48  Aligned_cols=6  Identities=100%  Similarity=1.376  Sum_probs=2.6

Q ss_pred             CCCCCC
Q 019677          164 RRSVSP  169 (337)
Q Consensus       164 sr~~sp  169 (337)
                      +++.||
T Consensus        84 ~rs~Sp   89 (196)
T KOG3263|consen   84 RRSVSP   89 (196)
T ss_pred             hcccCC
Confidence            334444

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=92.38  E-value=0.024  Score=54.21  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=42.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      ..|||||||+.++++.|.+. ..+-     +|..|      ..+++++||||+|.+.+.+..|+   ++..+ |.++.|
T Consensus         4 ~~l~V~nLp~~~~e~~l~~~F~~~G-----~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v   77 (352)
T TIGR01661         4 TNLIVNYLPQTMTQEEIRSLFTSIG-----EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV   77 (352)
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHccC-----CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence            35899999999999987762 1111     23222      24678899999999977776665   45554 445544

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF14259 RRM_6: RNA recognition motif (a

Probab=92.34  E-value=0.011  Score=43.71  Aligned_cols=52  Identities=17%  Similarity=0.020  Sum_probs=32.2

Q ss_pred             cCCcccccccccCCccchhhhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHhh
Q 019677          225 KGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       225 L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~D  280 (337)
                      ++|+|||+.++++.+++-  +... + +|..+.+     ++.+++|||+|.+.+.+..|+.
T Consensus         1 v~i~nlp~~~~~~~l~~~--f~~~-g-~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~   57 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNF--FSRF-G-PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALE   57 (70)
T ss_dssp             EEEESSTTT--HHHHHHH--CTTS-S-BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHH
T ss_pred             CEEeCCCCCCCHHHHHHH--HHhc-C-CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHH
Confidence            578999999988876661  1111 1 2333332     3458999999999777666654

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]

Probab=92.26  E-value=0.04  Score=56.75  Aligned_cols=69  Identities=16%  Similarity=-0.008  Sum_probs=45.6

Q ss_pred             cccCCcccccccccCCccchh--hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhccC-CcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE--EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAMFG-ASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~--~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~fG-~ptvv~  291 (337)
                      ..++||||||.++++.|.+..  .+-++..-.+....++..++|+|+||+..++...|..   ++-|+ -++-|.
T Consensus        19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~   93 (435)
T KOG0108|consen   19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN   93 (435)
T ss_pred             cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence            567899999999999987731  1111111112222378999999999999888777754   56554 444444

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=92.08  E-value=0.027  Score=58.13  Aligned_cols=65  Identities=9%  Similarity=-0.047  Sum_probs=45.2

Q ss_pred             ccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hh-ccCCcccCCC
Q 019677          224 TKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EA-MFGASAVPPS  292 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi-~fG~ptvv~~  292 (337)
                      +|||||||+.++++.|.+..  ...  -+|+.|.      +.++++||||+|.+.+.+..|++   +. ++|-++.|.-
T Consensus         2 sl~VgnLp~~vte~~L~~~F--~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~   76 (562)
T TIGR01628         2 SLYVGDLDPDVTEAKLYDLF--KPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW   76 (562)
T ss_pred             eEEEeCCCCCCCHHHHHHHH--Hhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence            58999999999999877621  111  0233332      36788999999999888888875   33 5777776643

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]

Probab=91.93  E-value=0.018  Score=53.58  Aligned_cols=70  Identities=19%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             cCCcccccccccCCccchh-h-hhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCCCC
Q 019677          225 KGSGWERFEFDKDAPLDDE-E-IEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPSVS  294 (337)
Q Consensus       225 L~VGnipf~~tEealldN~-~-Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~t~  294 (337)
                      +|||++||.+||..+|-+- + .+.++.+-+-...++.+++|||+-+.+..+..+|.|   ||. .|-.+-|....
T Consensus        38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            7899999999999888742 1 222222333334589999999999999888888876   665 44444444443

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=91.44  E-value=0.06  Score=57.62  Aligned_cols=64  Identities=17%  Similarity=0.087  Sum_probs=43.7

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||||||+.++++.|.+.- .+-     +|..|      .++++++||||+|.+.+....|+   ++..| |-++.|.
T Consensus       108 ~rLfVGnLp~~~tEe~Lr~lF~~fG-----~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~  182 (612)
T TIGR01645       108 CRVYVGSISFELREDTIRRAFDPFG-----PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG  182 (612)
T ss_pred             CEEEEcCCCCCCCHHHHHHHHHccC-----CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence            468999999999999876621 111     12222      25789999999999988877775   45554 4455554

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=91.42  E-value=0.042  Score=52.61  Aligned_cols=66  Identities=8%  Similarity=-0.017  Sum_probs=40.8

Q ss_pred             ccccccCCcccccccccCCccchh-hhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHH---hhhhccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAA---HDEAMFGA  286 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA---~Dgi~fG~  286 (337)
                      .+...|+|+|||+.++++.|.+.- .+-.+.. .-|..  +++.+++||||+|.+.+....|   ++|..|++
T Consensus       267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~-v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g  338 (352)
T TIGR01661       267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQN-VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN  338 (352)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEE-EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence            333459999999998888766621 1110111 11111  2778999999999995554444   56766654

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=91.16  E-value=0.083  Score=56.20  Aligned_cols=58  Identities=12%  Similarity=-0.012  Sum_probs=39.4

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      -.|+|||||+.++++.|.+.. .+-.|..--++....+++++||||+|.+.+.+..|+.
T Consensus        59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~  117 (578)
T TIGR01648        59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVK  117 (578)
T ss_pred             CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHH
Confidence            458999999999999987731 2211111011111357899999999999888877765

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=90.61  E-value=0.063  Score=46.39  Aligned_cols=72  Identities=17%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh----hhccCCcccCCCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD----EAMFGASAVPPSVS  294 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D----gi~fG~ptvv~~t~  294 (337)
                      ...|+|||||+.++++.|.+. ..+-.+ ....+..  .+..+++||||+|...+.+..|+.    ..+.|-++.|+...
T Consensus       115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         115 NNTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             CceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            577999999999999987772 111111 0011111  367899999999999888777764    44467788777654

>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]

Probab=90.56  E-value=0.18  Score=52.90  Aligned_cols=43  Identities=16%  Similarity=0.076  Sum_probs=29.5

Q ss_pred             ecCCcccchhhhhhhHhh---HHHHhhhhccC-CcccCCCCCCCCCC
Q 019677          257 HIGQSFRFSAIEARREEQ---IKAAHDEAMFG-ASAVPPSVSSDSEP  299 (337)
Q Consensus       257 qInqsk~fA~vEFKseet---valA~Dgi~fG-~ptvv~~t~~~~~~  299 (337)
                      .++.+|+|||.||.+...   ...++.|+-+| .++||+-.......
T Consensus       326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~  372 (500)
T KOG0120|consen  326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN  372 (500)
T ss_pred             ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence            356899999999999333   44446677777 67788766644433

>PLN03120 nucleic acid binding protein; Provisional

Probab=90.05  E-value=0.1  Score=50.50  Aligned_cols=65  Identities=6%  Similarity=-0.060  Sum_probs=40.3

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEecC---CcccchhhhhhhHhhHHHH--hhhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIG---QSFRFSAIEARREEQIKAA--HDEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qIn---qsk~fA~vEFKseetvalA--~Dgi~-fG~ptvv~  291 (337)
                      ..+||||||+.++++.|.+.-..-   | .|..|.|.   ...+||||+|.+++.+..|  +++.. .|.++.|.
T Consensus         5 rtVfVgNLs~~tTE~dLrefFS~~---G-~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt   75 (260)
T PLN03120          5 RTVKVSNVSLKATERDIKEFFSFS---G-DIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTIT   75 (260)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhc---C-CeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEE
Confidence            468999999999999877721110   0 12233321   2568999999997665555  45554 44455444

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=89.48  E-value=0.093  Score=53.77  Aligned_cols=66  Identities=12%  Similarity=-0.033  Sum_probs=47.4

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh-----hh-ccCCcccCCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD-----EA-MFGASAVPPSV  293 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D-----gi-~fG~ptvv~~t  293 (337)
                      +.++|+|||+.++++.|.+.. ..     -+|..|.+-.+++||||||.+.+.+..|+.     ++ +.|.++.|+-.
T Consensus         3 ~vv~V~nLp~~~te~~L~~~f~~f-----G~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s   75 (481)
T TIGR01649         3 PVVHVRNLPQDVVEADLVEALIPF-----GPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS   75 (481)
T ss_pred             cEEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence            457899999999999877621 12     146666666789999999999888777764     33 35667777643

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]

Probab=89.01  E-value=0.11  Score=52.85  Aligned_cols=121  Identities=18%  Similarity=0.181  Sum_probs=75.2

Q ss_pred             CCCCCcccccCCCCCCChHHHHHH-------------------------------HHhhhhccccccccccCCccccccc
Q 019677          186 NSKVDYSRLIEGYDHMTPAAIVKA-------------------------------KMKLQLAETANKDETKGSGWERFEF  234 (337)
Q Consensus       186 ~~~~d~~~~i~GfE~~TPAEkvka-------------------------------r~q~QL~~tA~adr~L~VGnipf~~  234 (337)
                      +++.+--++--|+-.|++.++...                               ++++|-.++-...-+.|||.|-|.+
T Consensus        46 pG~~~A~k~~LGLpkLsseq~d~iqkAKKYAMeqSIK~vL~kQtiahqQQQl~~qr~q~qrqqALaiMcRvYVGSIsfEl  125 (544)
T KOG0124|consen   46 PGKKDAQKIGLGLPKLSSEQKDDIQKAKKYAMEQSIKQVLLKQTIAHQQQQLNQQRQQMQRQQALAIMCRVYVGSISFEL  125 (544)
T ss_pred             CCchhHHhhccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeeeeeEEEe
Confidence            355566666678888888743220                               2223323333444568999999999


Q ss_pred             ccCCccc---hhh-hhhcc--CCceeEEecCCcccchhhhhhhHhhHHHHhh---hhccCC-ccc--CCCCCCCCCCCCC
Q 019677          235 DKDAPLD---DEE-IEAAE--DDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAMFGA-SAV--PPSVSSDSEPEPD  302 (337)
Q Consensus       235 tEealld---N~~-Leaie--~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~fG~-ptv--v~~t~~~~~~~~~  302 (337)
                      -|+++-.   .-+ |.-|+  =||+    +.+-|+|||||+.-.|-..+|++   +.++|+ .+-  .|+++.-.+|-..
T Consensus       126 ~EDtiR~AF~PFGPIKSInMSWDp~----T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID  201 (544)
T KOG0124|consen  126 REDTIRRAFDPFGPIKSINMSWDPA----TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID  201 (544)
T ss_pred             chHHHHhhccCCCCcceeecccccc----cccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHH
Confidence            8887544   111 22233  3777    88999999999999989999986   666775 333  3466655555443


Q ss_pred             CcccccCC
Q 019677          303 SSEKKSSD  310 (337)
Q Consensus       303 ~~~~~~~~  310 (337)
                      -..+++++
T Consensus       202 ~vqeeAk~  209 (544)
T KOG0124|consen  202 MVQEEAKK  209 (544)
T ss_pred             HHHHHHHh
Confidence            33334333

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=88.49  E-value=0.21  Score=49.67  Aligned_cols=12  Identities=58%  Similarity=1.002  Sum_probs=4.4

Q ss_pred             CCccccccccCC
Q 019677          116 DRDRERSHRDRG  127 (337)
Q Consensus       116 ~r~r~r~~r~r~  127 (337)
                      +|+++|++||++
T Consensus       268 ~rd~~rr~rd~~  279 (319)
T KOG0796|consen  268 SRDRDRRSRDRS  279 (319)
T ss_pred             cccccccCCccc
Confidence            333333333333

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=88.32  E-value=0.84  Score=48.91  Aligned_cols=15  Identities=47%  Similarity=0.771  Sum_probs=5.9

Q ss_pred             hhhhhhccCCCCCCC
Q 019677          155 RERERERGRRRSVSP  169 (337)
Q Consensus       155 r~r~r~r~rsr~~sp  169 (337)
                      ++|+++|+||.++++
T Consensus       645 rSrs~SRsrS~srs~  659 (757)
T KOG4368|consen  645 RSRSQSRSRSKSYSP  659 (757)
T ss_pred             ccccCCcccccccCC
Confidence            333334444443333

>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]

Probab=85.54  E-value=0.2  Score=46.73  Aligned_cols=72  Identities=15%  Similarity=0.082  Sum_probs=51.0

Q ss_pred             cccccccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hh-ccCC
Q 019677          217 ETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EA-MFGA  286 (337)
Q Consensus       217 ~tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi-~fG~  286 (337)
                      ....++-.+|||||+..++++.|.+..    +.--||+.++      ++..++|+|+||.+++-+.-|..   .+ ++|-
T Consensus         4 ~~rnqd~tiyvgnld~kvs~~~l~EL~----iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr   79 (203)
T KOG0131|consen    4 IERNQDATLYVGNLDEKVSEELLYELF----IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR   79 (203)
T ss_pred             cccCCCceEEEecCCHHHHHHHHHHHH----HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence            345677889999999988888766621    1122555555      45688999999999988887754   33 3888


Q ss_pred             cccCCC
Q 019677          287 SAVPPS  292 (337)
Q Consensus       287 ptvv~~  292 (337)
                      |+-|..
T Consensus        80 pIrv~k   85 (203)
T KOG0131|consen   80 PIRVNK   85 (203)
T ss_pred             eeEEEe
Confidence            886653

>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]

Probab=85.37  E-value=0.39  Score=44.56  Aligned_cols=65  Identities=11%  Similarity=-0.053  Sum_probs=41.3

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEecC-CcccchhhhhhhH---hhHHHHhhhhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIG-QSFRFSAIEARRE---EQIKAAHDEAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qIn-qsk~fA~vEFKse---etvalA~Dgi~-fG~ptvv  290 (337)
                      +..+|||||++.+++..|-.  .+.+.  -|+-.++|. ..-+||||||.+.   +.+.-+|||.. .|.-+-|
T Consensus        10 ~~kVYVGnL~~~a~k~eLE~--~F~~y--G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV   79 (195)
T KOG0107|consen   10 NTKVYVGNLGSRATKRELER--AFSKY--GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV   79 (195)
T ss_pred             CceEEeccCCCCcchHHHHH--HHHhc--CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence            45689999999988876422  11111  155555654 5678999999983   33445577665 4555533

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=84.68  E-value=0.53  Score=50.22  Aligned_cols=70  Identities=10%  Similarity=0.085  Sum_probs=44.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE---ecCCcccchhhhhhhHhhHHHHhhhh------ccCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK---HIGQSFRFSAIEARREEQIKAAHDEA------MFGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~---qInqsk~fA~vEFKseetvalA~Dgi------~fG~ptvv~  291 (337)
                      ...|+|+|||+.++++.|++. ..+.....+.++..   ...+.++|+||+|.+.+..++|+...      ++|..+.|.
T Consensus       138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd  217 (578)
T TIGR01648       138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD  217 (578)
T ss_pred             CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence            456999999999999887772 11111111112111   12457899999999988888887643      345555554

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=83.49  E-value=0.26  Score=49.08  Aligned_cols=59  Identities=12%  Similarity=-0.035  Sum_probs=37.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCcee-EEecCCcccchhhhhhhHhhHHHHhh
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAAL-VKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl-~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ...|+|+|||+.++++.|.+. ...-.+..-.|+ ....+..++|+||+|.+.+.+..|+.
T Consensus       193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~  253 (346)
T TIGR01659       193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS  253 (346)
T ss_pred             cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence            345899999999999876662 111111000011 11256778999999999777666654

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]

Probab=83.15  E-value=0.27  Score=47.13  Aligned_cols=72  Identities=13%  Similarity=-0.039  Sum_probs=49.5

Q ss_pred             cccccccccCCcccccccccCCccchhhhhhccCCceeEEecC----CcccchhhhhhhHhhHHHHhh---hhc-cCCcc
Q 019677          217 ETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIG----QSFRFSAIEARREEQIKAAHD---EAM-FGASA  288 (337)
Q Consensus       217 ~tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qIn----qsk~fA~vEFKseetvalA~D---gi~-fG~pt  288 (337)
                      +++..|+.|+|+|+.-+++++.|.+ .-|   ..-||+-+-|.    +.-.||||+|+.|-+|.+|..   |+- |+-++
T Consensus         4 aaae~drtl~v~n~~~~v~eelL~E-lfi---qaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~   79 (267)
T KOG4454|consen    4 AAAEMDRTLLVQNMYSGVSEELLSE-LFI---QAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEE   79 (267)
T ss_pred             CCcchhhHHHHHhhhhhhhHHHHHH-Hhh---ccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchh
Confidence            4567888999999988888775433 112   23366666553    334499999999999988864   443 67666


Q ss_pred             cCCC
Q 019677          289 VPPS  292 (337)
Q Consensus       289 vv~~  292 (337)
                      -++.
T Consensus        80 q~~~   83 (267)
T KOG4454|consen   80 QRTL   83 (267)
T ss_pred             hccc
Confidence            6653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	5e-06
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	3e-05

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 1/101 (0%)

Query: 79  KPSEEKPAQSRVSTKDSDRDRDRDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRG 138
                 P      ++         R    +          R+ +++    D       RG
Sbjct: 475 GVLLNDPQLKIPVSRRFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRG 534

Query: 139 RSDRDRDGNREREYKDRERERERGRRRSVSPPREGRGGKRR 179
             + +      R+Y D    R    RRS S   +      R
Sbjct: 535 NKNYNNRSQN-RDYDDEPFRRSNNNRRSFSRSNDKNNYSSR 574

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 14/87 (16%), Positives = 24/87 (27%)

Query: 101 RDRERSHRDRGRDHRDRDRERSHRDRGRDHRDRDRDRGRSDRDRDGNREREYKDRERERE 160
           R  ++    R    +     R +  R  +++  D D       R               +
Sbjct: 490 RFLDKLGLSRSPIGKAMFEIRDYSSRDGNNKSYDYDDDSEISFRGNKNYNNRSQNRDYDD 549

Query: 161 RGRRRSVSPPREGRGGKRREVEKERNS 187
              RRS +  R       +     RNS
Sbjct: 550 EPFRRSNNNRRSFSRSNDKNNYSSRNS 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	97.77
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.45
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	96.87
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	96.83
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	96.42
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	96.3
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	96.24
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	96.22
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	96.19
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	96.11
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	96.08
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	96.05
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	96.05
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	96.01
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	95.99
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	95.99
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	95.98
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	95.97
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	95.95
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	95.91
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	95.9
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	95.87
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	95.86
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	95.81
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	95.78
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	95.66
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	95.64
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	95.59
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	95.57
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	95.56
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	95.55
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	95.54
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	95.53
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	95.51
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	95.48
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	95.47
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	95.47
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	94.46
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	95.42
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	95.41
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	95.4
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	95.39
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	95.38
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	95.37
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	95.35
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	95.34
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	95.3
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	95.29
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	95.29
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	95.29
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	95.28
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	95.28
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	95.27
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	95.22
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	95.22
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	95.22
2div_A	99	TRNA selenocysteine associated protein; structural	95.21
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	95.17
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	95.14
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	95.13
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	95.12
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	95.1
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	95.1
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	95.09
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	95.08
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	95.05
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	95.05
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	95.04
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	95.0
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	94.97
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	94.97
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	94.96
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	94.95
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	94.93
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	94.91
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	94.89
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	94.89
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	94.86
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	94.86
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	94.86
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	94.85
2dis_A	109	Unnamed protein product; structural genomics, RRM	94.85
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	94.85
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	94.85
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	94.85
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	94.81
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	94.78
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	94.77
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	94.77
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	94.76
1x4e_A	85	RNA binding motif, single-stranded interacting pro	94.76
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	94.75
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	94.74
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	94.73
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	94.73
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	94.71
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	94.66
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	94.63
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	94.63
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	94.63
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	94.63
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	94.62
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	94.61
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	94.59
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	94.58
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	94.54
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	94.54
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	94.53
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	94.5
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	94.48
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	94.47
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	94.47
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	94.46
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	94.46
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	94.43
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	94.43
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	94.4
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	94.4
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	94.35
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	94.33
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	94.32
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	94.31
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	94.3
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	94.29
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	94.28
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	94.26
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	94.25
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	94.21
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	94.13
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	94.11
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	94.07
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	94.05
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	94.05
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	94.03
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	93.99
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	93.99
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	93.93
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	93.9
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	93.9
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	93.82
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	93.82
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	93.81
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	93.76
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	93.75
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	93.73
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	93.73
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	93.71
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	93.7
1x5o_A	114	RNA binding motif, single-stranded interacting pro	93.55
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	93.55
1jmt_B	28	Splicing factor U2AF 65 kDa subunit; RRM, RNA spli	93.49
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	93.34
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	93.33
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	93.32
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	93.26
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	93.25
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	93.12
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	93.03
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	92.91
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	92.56
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	92.4
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	92.37
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	91.9
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	91.88
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	91.8
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	91.38
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.22
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	91.1
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	90.89
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	90.88
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	89.87
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	89.83
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	89.76
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	89.66
1x5p_A	97	Negative elongation factor E; structure genomics,	89.45
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	89.45
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	89.31
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	89.27
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	88.81
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	88.37
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	88.33
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	88.12
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	87.97
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	87.85
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	87.3
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	86.83
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	86.4
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	85.97
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	85.18
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	84.24
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	84.23
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	84.15
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	83.67
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	83.51
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	83.18
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	81.18
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	80.74

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=97.77  E-value=8.9e-06  Score=80.62  Aligned_cols=8  Identities=13%  Similarity=0.206  Sum_probs=3.0

Q ss_pred             HHHHHHHH
Q 019677            6 AAAYYDEL   13 (337)
Q Consensus         6 ~~~~~~~~   13 (337)
                      |.+.+..|
T Consensus       157 A~~Ai~~l  164 (437)
T 3pgw_S          157 MHSAYKHA  164 (437)
T ss_pred             HHHHHHHc
Confidence            33333333

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.45  E-value=2.1e-05  Score=58.97  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             ccccccCCcccccccccCCccc---hh----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLD---DE----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFG  285 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealld---N~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG  285 (337)
                      .....|||||||+.++++.|.+   ..    ++...++.++..+.+..+++||||+|.+.+.+..|+  ++..|+
T Consensus         4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~   78 (87)
T 2hzc_A            4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQ   78 (87)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence            4556799999999999988776   22    333334568999999999999999999977665554  455444

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=96.87  E-value=0.00018  Score=60.71  Aligned_cols=70  Identities=21%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             ccccCCcccccccccCCccch---h----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD---E----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN---~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~  291 (337)
                      .+.|||+|||+.++++.|.+.   .    ++...++++++.+.++.+++||||+|.+.+.+..|+  ++.. .|.++.|.
T Consensus         4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~   83 (198)
T 2yh0_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR   83 (198)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEE
T ss_pred             eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEe
Confidence            467999999999999987772   1    333345668999999999999999999977766554  4544 44555444

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=96.83  E-value=0.00022  Score=58.79  Aligned_cols=71  Identities=21%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             ccccCCcccccccccCCccch---h----hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD---E----EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN---~----~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~  291 (337)
                      ...|||||||+.++++.|.+.   .    ++...++.+++.+.+..+++||||+|.+.+.+..|+  ++.. .|.++.|.
T Consensus         4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~   83 (172)
T 2g4b_A            4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR   83 (172)
T ss_dssp             GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred             ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeec
Confidence            467899999999999987772   1    222234568999999999999999999977766665  4444 44455444


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      .
T Consensus        84 ~   84 (172)
T 2g4b_A           84 R   84 (172)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.42  E-value=0.00054  Score=55.92  Aligned_cols=70  Identities=7%  Similarity=-0.091  Sum_probs=48.4

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh------hccCCcccCC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE------AMFGASAVPP  291 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg------i~fG~ptvv~  291 (337)
                      ......|||||||+.++++.|.+. ...    | .|..|.|-.+++||||||.+.+....|++.      .+.|-++.|.
T Consensus        13 ~~~~~~LfV~nLp~~vte~dL~~lF~~f----G-~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~   87 (105)
T 1sjq_A           13 GVPSRVIHIRKLPIDVTEGEVISLGLPF----G-KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ   87 (105)
T ss_dssp             CCCCCEEEECSCCTTSCHHHHHHHHHHH----C-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence            344567999999999998886652 111    1 356666667799999999997776666542      2456677666


Q ss_pred             CC
Q 019677          292 SV  293 (337)
Q Consensus       292 ~t  293 (337)
                      -.
T Consensus        88 ~A   89 (105)
T 1sjq_A           88 FS   89 (105)
T ss_dssp             CC
T ss_pred             Ec
Confidence            43

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=96.30  E-value=0.00064  Score=54.59  Aligned_cols=64  Identities=6%  Similarity=-0.127  Sum_probs=47.1

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      -.||||||++.++++.|.+.. +.-     ||+.+++..+++||||||.+++.+..|.   ++.. +|-++.|.
T Consensus         8 ~wL~VgNL~~~~te~~L~~lF~q~G-----~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~   76 (89)
T 2wbr_A            8 SWLLLKNLTAQIDGPTLRTLCMQHG-----PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAE   76 (89)
T ss_dssp             CEEEEECCCTTCCCHHHHHHHHHHS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             ceEEEeCCCccCCHHHHHHHHHhhC-----CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence            358999999999999877732 222     6888899899999999999976665554   4545 45555553

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=96.24  E-value=0.00051  Score=53.05  Aligned_cols=70  Identities=14%  Similarity=0.011  Sum_probs=44.4

Q ss_pred             ccCCcccccccccCCccch---hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hh-ccCCcccCCCC
Q 019677          224 TKGSGWERFEFDKDAPLDD---EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EA-MFGASAVPPSV  293 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN---~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi-~fG~ptvv~~t  293 (337)
                      .|+|+|||+.++++.|.+.   .+..+....-+....++.+++||||+|.+.+.+..|++    +. +.|-++.|.-.
T Consensus         3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a   80 (91)
T 2lxi_A            3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS   80 (91)
T ss_dssp             EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence            4789999999999987772   12111111111112367899999999999877776654    33 34567766543

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.22  E-value=0.0012  Score=53.00  Aligned_cols=67  Identities=7%  Similarity=-0.096  Sum_probs=46.1

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h--h-ccCCcccCCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E--A-MFGASAVPPSV  293 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g--i-~fG~ptvv~~t  293 (337)
                      ...|||+|||+.++++.|.+.. ..-     .|..+.+-..++||||||.+.+....|+.   +  + +.|.++.|.-.
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a   88 (104)
T 1wex_A           15 SPVVHVRGLCESVVEADLVEALEKFG-----TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS   88 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTTS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence            4569999999999988766521 111     34455555679999999999777766654   2  2 46677766643

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=96.19  E-value=0.00092  Score=51.60  Aligned_cols=71  Identities=14%  Similarity=0.005  Sum_probs=45.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhcc-CCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMF-GASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~f-G~ptvv~  291 (337)
                      ....|||||||+.++++.|.+. ...-.+...-+....++.+++||||+|.+.+.+..|+  ++..| |.++.|.
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~   90 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE   90 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence            3457999999999999887662 1211122223344457889999999999976665554  44443 4455444

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.11  E-value=0.0008  Score=53.76  Aligned_cols=65  Identities=6%  Similarity=-0.162  Sum_probs=45.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh-----h-ccCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE-----A-MFGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg-----i-~fG~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ...-     .|..+.+...++||||||.+.+....|+..     . +.|-++.|.
T Consensus        15 ~~~l~V~nLp~~~te~~L~~~F~~fG-----~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~   86 (101)
T 2cq1_A           15 SRVLHIRKLPGEVTETEVIALGLPFG-----KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ   86 (101)
T ss_dssp             CSEEEEESCCTTCCHHHHHHTTTTTS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence            356999999999998876652 1111     245555666799999999997777666652     2 456677665

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=96.08  E-value=0.0021  Score=53.19  Aligned_cols=66  Identities=12%  Similarity=-0.038  Sum_probs=43.7

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCC-cccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQ-SFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInq-sk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ....|||||||+.++++.|.+. ...    + +|..|.|.. +++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~  143 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFGYY----G-PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE  143 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHHHH----S-CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhh----C-CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence            3356899999999998876552 111    1 355566544 4999999999977766665   45444 4455443

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.05  E-value=0.0017  Score=50.13  Aligned_cols=70  Identities=11%  Similarity=-0.075  Sum_probs=46.6

Q ss_pred             ccccccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          216 AETANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       216 ~~tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      .........|||||||+.++++.|.+. ...     -+|..+.+..+++||||+|.+.+.+..|+   ++..| |.++.|
T Consensus        21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~-----G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V   95 (101)
T 2la4_A           21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNF-----GFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT   95 (101)
T ss_dssp             TTSCSSCCEEEEESCCTTCCHHHHHHHHHTT-----SCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred             hcCCCCCCEEEEcCCCcccCHHHHHHHHHhC-----CCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence            334444567999999999998876652 111     13555666689999999999977666554   45554 444444

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=96.05  E-value=0.0032  Score=51.35  Aligned_cols=72  Identities=10%  Similarity=-0.011  Sum_probs=45.7

Q ss_pred             cccccCCcccccccccCCccch-hhhhhcc-CCceeEE--ecCCcccchhhhhhhHhhHHHHh---hh-----hccCCcc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAALVK--HIGQSFRFSAIEARREEQIKAAH---DE-----AMFGASA  288 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie-~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dg-----i~fG~pt  288 (337)
                      ....|||||||+.++++.|.+. ...-.+. .+..|..  .++++++||||+|.+. ....|+   ++     .+.|-++
T Consensus        22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l  100 (131)
T 2m2b_A           22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI  100 (131)
T ss_dssp             CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence            3456999999999999887662 1111111 1112222  2678999999999998 655554   45     4566677


Q ss_pred             cCCCC
Q 019677          289 VPPSV  293 (337)
Q Consensus       289 vv~~t  293 (337)
                      .|...
T Consensus       101 ~V~~a  105 (131)
T 2m2b_A          101 NVEFA  105 (131)
T ss_dssp             CCEEC
T ss_pred             EEEEC
Confidence            66533

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=96.01  E-value=0.0012  Score=54.28  Aligned_cols=67  Identities=12%  Similarity=-0.065  Sum_probs=45.7

Q ss_pred             cccccCCcccccc-cccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhhh-----h-ccCCcccCCC
Q 019677          221 KDETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHDE-----A-MFGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~Dg-----i-~fG~ptvv~~  292 (337)
                      ....|||+|||+. ++++.|.+.. ..-     .|..|.|..+++||||||.+.+....|+..     . +.|-++.|.-
T Consensus        24 p~~~l~V~NLp~~~~te~~L~~lF~~fG-----~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~   98 (112)
T 1x4f_A           24 LGRVIHLSNLPHSGYSDSAVLKLAEPYG-----KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL   98 (112)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTTS-----CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred             CCCEEEEeCCCCccCCHHHHHHHHHhcC-----CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence            3457999999997 8888766521 111     244555667899999999997776666542     2 4566776653

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=95.99  E-value=0.00057  Score=54.73  Aligned_cols=68  Identities=10%  Similarity=-0.037  Sum_probs=42.7

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      .|||||||+.++++.|.+. ...-.+ .+.-|..+.+.+++||||+|.+.+.+..|+   ++.. .|-++.|..
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~   79 (115)
T 4f25_A            7 NIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR   79 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            4899999999999876662 111100 011222334557899999999977776665   4554 455665543

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.99  E-value=0.0013  Score=52.95  Aligned_cols=68  Identities=16%  Similarity=-0.033  Sum_probs=47.9

Q ss_pred             ccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h---hccCCcccCCCC
Q 019677          222 DETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E---AMFGASAVPPSV  293 (337)
Q Consensus       222 dr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g---i~fG~ptvv~~t  293 (337)
                      ...|||||||+ .++++.|.+. ...    + .|..|.|-.+++||||||.+.+....|++   +   .+.|-++.|.-.
T Consensus        15 ~~~l~V~nLp~~~~te~dL~~lF~~f----G-~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a   89 (102)
T 1x4d_A           15 RRVVHIMDFQRGKNLRYQLLQLVEPF----G-VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS   89 (102)
T ss_dssp             CCEEEEESCCCSSSHHHHHHTTTGGG----S-CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHhc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence            35699999999 9988876652 122    1 36666777788999999999777666654   2   256777777644


Q ss_pred             C
Q 019677          294 S  294 (337)
Q Consensus       294 ~  294 (337)
                      .
T Consensus        90 ~   90 (102)
T 1x4d_A           90 Q   90 (102)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=95.98  E-value=0.00089  Score=54.23  Aligned_cols=66  Identities=9%  Similarity=-0.110  Sum_probs=46.6

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hh---ccCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EA---MFGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi---~fG~ptvv~  291 (337)
                      ....|||+|+|+.++++.|.+.. ..    | +|..+.+-..++||||||.+.+....|++   +.   +.|-++.|+
T Consensus        20 ps~~l~V~NLp~~~te~~L~~lF~~f----G-~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~   92 (100)
T 3r27_A           20 ASPVVHIRGLIDGVVEADLVEALQEF----G-PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN   92 (100)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHGGG----S-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHhcc----C-CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence            44679999999999998765521 12    1 35566666789999999999877776765   32   346677665

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=95.97  E-value=0.00049  Score=54.15  Aligned_cols=65  Identities=8%  Similarity=-0.007  Sum_probs=42.4

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv  289 (337)
                      +...|||||||+.++++.|.+.- ..-     +|..|      .++.+++||||+|.+.+.+..|+   ++..|+ -++.
T Consensus        18 ~gt~lfV~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~   92 (99)
T 4fxv_A           18 QGTNLIVNYLPQNMTQDELRSLFSSIG-----EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK   92 (99)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            34569999999999998866621 110     12222      24678899999999977766554   455544 4444


Q ss_pred             C
Q 019677          290 P  290 (337)
Q Consensus       290 v  290 (337)
                      |
T Consensus        93 V   93 (99)
T 4fxv_A           93 V   93 (99)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=95.95  E-value=0.00063  Score=51.83  Aligned_cols=71  Identities=13%  Similarity=0.101  Sum_probs=42.5

Q ss_pred             ccCCcccccccccCCccch-hhhhhccC-CceeEEe--cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKH--IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSVS  294 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~q--Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t~  294 (337)
                      .|||||||+.++++.|.+. ...-.++. +..+..+  .+++++||||+|.+.+.+..|+   ++.. .|-++.|....
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            4899999999998876662 11110011 2222222  6688999999999977765554   4544 55566665444

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.91  E-value=0.0027  Score=49.48  Aligned_cols=72  Identities=8%  Similarity=-0.063  Sum_probs=46.6

Q ss_pred             ccccccccCCcccccccccCCccch-hhhhhccCCceeEEec------CCcccchhhhhhhHhhHHHHhh---------h
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQSFRFSAIEARREEQIKAAHD---------E  281 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nqsk~fA~vEFKseetvalA~D---------g  281 (337)
                      .......|||+|||+.++++.|.+. ..+-     +|..|.|      +..++||||+|.+.+.+..|+.         +
T Consensus        11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~   85 (111)
T 1x4h_A           11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFG-----DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG   85 (111)
T ss_dssp             CCCCCCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred             cCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence            3344567999999999998876662 1111     2344443      4678999999999777766654         3


Q ss_pred             hc-cCCcccCCCCC
Q 019677          282 AM-FGASAVPPSVS  294 (337)
Q Consensus       282 i~-fG~ptvv~~t~  294 (337)
                      .. .|.++.|....
T Consensus        86 ~~~~g~~l~v~~a~   99 (111)
T 1x4h_A           86 LKLDGRQLKVDLAV   99 (111)
T ss_dssp             EESSSCEEEEECCC
T ss_pred             cEEcCEEEEEEECC
Confidence            44 45556555433

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.90  E-value=0.0022  Score=49.66  Aligned_cols=70  Identities=10%  Similarity=0.065  Sum_probs=45.2

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHhh----hhc-cCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAHD----EAM-FGA  286 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~D----gi~-fG~  286 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.|       +..++||||+|.+.+.+..|+.    +.. .|.
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~   87 (107)
T 2cph_A           13 QTTSKILVRNIPFQANQREIRELFSTFG-----ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR   87 (107)
T ss_dssp             SCCCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHccC-----CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence            34466999999999998876652 1111     2444443       4558999999999777666653    334 455


Q ss_pred             cccCCCCC
Q 019677          287 SAVPPSVS  294 (337)
Q Consensus       287 ptvv~~t~  294 (337)
                      ++.|....
T Consensus        88 ~l~v~~a~   95 (107)
T 2cph_A           88 RLVLEWAD   95 (107)
T ss_dssp             BCEEEECC
T ss_pred             EEEEEeCC
Confidence            66665443

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.87  E-value=0.00093  Score=53.94  Aligned_cols=58  Identities=21%  Similarity=0.056  Sum_probs=37.8

Q ss_pred             cccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ..|||+|||+.++++.|.+. ..+-.+.. --++....+..++||||+|.+.+.+..|+.
T Consensus        26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~   85 (124)
T 1wel_A           26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC   85 (124)
T ss_dssp             CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence            56899999999998876652 11111111 112222367889999999999777666654

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.86  E-value=0.0027  Score=49.95  Aligned_cols=74  Identities=8%  Similarity=-0.095  Sum_probs=46.7

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCC-ceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDD-AALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSVS  294 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~D-pvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t~  294 (337)
                      ....|||+|||+.++++.|.+. ..+-.+..- -.+....+..++||||+|.+.+.+..|+   ++.. .|.++.|....
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~  103 (115)
T 2cpx_A           24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK  103 (115)
T ss_dssp             CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence            3467999999999999887662 122111110 1112226788999999999977766665   4444 55666665433

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.81  E-value=0.0014  Score=48.77  Aligned_cols=57  Identities=9%  Similarity=-0.094  Sum_probs=41.0

Q ss_pred             ccccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          220 NKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      .....|||+|||+.++++.|.+.  +..  --+|..+.+..+++||||+|.+.+.+..|+.
T Consensus        10 ~~~~~l~V~~l~~~~t~~~l~~~--f~~--~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~   66 (85)
T 2ytc_A           10 KTITTLYVGGLGDTITETDLRNH--FYQ--FGEIRTITVVQRQQCAFIQFATRQAAEVAAE   66 (85)
T ss_dssp             SSCCCEEEECCTTTSCHHHHHHH--HHT--TSCEEEEEEEGGGTEEEEEESSHHHHHHHHH
T ss_pred             CCccEEEEcCCCCCCCHHHHHHH--HHh--CCCEeEEEEECCCCEEEEEECCHHHHHHHHH
Confidence            34467999999999888875551  111  1147777777889999999999777666653

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.78  E-value=0.0012  Score=54.76  Aligned_cols=67  Identities=7%  Similarity=-0.057  Sum_probs=45.4

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---h---hccCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---E---AMFGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---g---i~fG~ptvv~~  292 (337)
                      ....|||||||+.++++.|.+.. ..     -.|..+.|-.+++||||||.+.+.+..|+.   +   .+.|-++.|.-
T Consensus        30 ps~~LfVgNLp~~vte~dL~~lF~~f-----G~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~  103 (119)
T 2ad9_A           30 PSRVIHIRKLPIDVTEGEVISLGLPF-----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF  103 (119)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHTTT-----SCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence            34679999999999988766521 11     124445555679999999999777666654   2   24666776653

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.66  E-value=0.0017  Score=50.07  Aligned_cols=66  Identities=14%  Similarity=-0.018  Sum_probs=45.2

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||+|||+.++++.|.+. ...     -+|..+.+..+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~   84 (99)
T 2cpj_A           14 QRSRLFVGNLPPDITEEEMRKLFEKY-----GKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR   84 (99)
T ss_dssp             CTTEEEEESCCTTCCHHHHHHHTSTT-----CCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhc-----CCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence            3456999999999988876551 111     14566677788999999999976665554   4544 45555554

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=95.64  E-value=0.0025  Score=52.39  Aligned_cols=73  Identities=10%  Similarity=-0.119  Sum_probs=46.3

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccC------CceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAED------DAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~------Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv  289 (337)
                      ....|||||||+.++++.|.+. ..+-.+..      --+.....+.+++||||+|.+.+.+..|+   ++.. .|.++.
T Consensus        44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~  123 (143)
T 3egn_A           44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV  123 (143)
T ss_dssp             CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence            3456999999999998876662 11111111      01222357889999999999977766554   4544 555666


Q ss_pred             CCCC
Q 019677          290 PPSV  293 (337)
Q Consensus       290 v~~t  293 (337)
                      |...
T Consensus       124 V~~a  127 (143)
T 3egn_A          124 VQFA  127 (143)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6543

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=95.59  E-value=0.0013  Score=47.97  Aligned_cols=52  Identities=8%  Similarity=-0.030  Sum_probs=35.2

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D  280 (337)
                      .|||+|||+.++++.|.+. ...-     ++..+      ..+.+++||||+|.+.+.+..|+.
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~   59 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFG-----KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE   59 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTS-----CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence            3789999999998886662 1111     11122      246678999999999777666653

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.57  E-value=0.0022  Score=51.13  Aligned_cols=65  Identities=3%  Similarity=-0.244  Sum_probs=45.6

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+.- ..     -+|..|.|..+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        10 ~~~l~V~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   79 (111)
T 1whx_A           10 KTVILAKNLPAGTLAAEIQETFSRF-----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE   79 (111)
T ss_dssp             EEEEEEESCCTTCCHHHHHHHHHTT-----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence            4569999999999888765521 11     14667778889999999999977766664   4554 45555443

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.56  E-value=0.0023  Score=49.50  Aligned_cols=70  Identities=11%  Similarity=0.006  Sum_probs=45.1

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.|    +..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   87 (103)
T 2cqi_A           13 GQPRTLYVGNLSRDVTEVLILQLFSQIG-----PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV   87 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHHHHHS-----CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHhcC-----CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence            34466999999999998876662 1111     2333332    346899999999977766554   4444 5666666


Q ss_pred             CCCC
Q 019677          291 PSVS  294 (337)
Q Consensus       291 ~~t~  294 (337)
                      ....
T Consensus        88 ~~a~   91 (103)
T 2cqi_A           88 NWAT   91 (103)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            5444

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=95.55  E-value=0.0017  Score=53.80  Aligned_cols=75  Identities=15%  Similarity=0.030  Sum_probs=49.5

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCCCCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPPSVS  294 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~~t~  294 (337)
                      .....|||+|||+.++++.|.+. ..+-.+.+-.+..+.++.+++||||+|.+.+.+..|+  ++.. .|.++.|....
T Consensus        11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~   89 (175)
T 1fje_B           11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK   89 (175)
T ss_dssp             SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence            44566999999999999887661 1211111234555568899999999999977665554  4544 45566655443

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.54  E-value=0.0027  Score=49.87  Aligned_cols=68  Identities=10%  Similarity=-0.026  Sum_probs=47.4

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ......|||+|||+.++++.|.+. ...    + +|..|.+...++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G-~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   94 (109)
T 1x4g_A           22 SPKNCTVYCGGIASGLTDQLMRQTFSPF----G-QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY   94 (109)
T ss_dssp             CSSCCEEEEECCSSCCCHHHHHHHHHHH----S-CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence            345567999999999998876652 111    1 4667777777999999999977766554   55554 4455444

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.53  E-value=0.00085  Score=53.20  Aligned_cols=69  Identities=10%  Similarity=-0.056  Sum_probs=46.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG~ptvv  290 (337)
                      ....|||+|||+.++++.|.+. ..+     -+|..|.      .+..++||||+|.+.+.+..|+.   +.+.|.++.|
T Consensus        16 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V   90 (116)
T 2cqd_A           16 TFTKIFVGGLPYHTTDASLRKYFEGF-----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV   90 (116)
T ss_dssp             SSSEEEEECCCSSCCHHHHHHHHHTT-----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhC-----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEE
Confidence            3456999999999998876662 111     1233333      35678899999999888777764   5556667766


Q ss_pred             CCCC
Q 019677          291 PSVS  294 (337)
Q Consensus       291 ~~t~  294 (337)
                      ....
T Consensus        91 ~~a~   94 (116)
T 2cqd_A           91 NLAY   94 (116)
T ss_dssp             EEST
T ss_pred             EEcc
Confidence            5443

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=95.51  E-value=0.0046  Score=47.97  Aligned_cols=69  Identities=10%  Similarity=0.044  Sum_probs=41.1

Q ss_pred             ccccccccCCcccccccccCCccchhhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHH--hhhhccCC-c
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAA--HDEAMFGA-S  287 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA--~Dgi~fG~-p  287 (337)
                      .......|||||||+.++++.|.+.  +... +  |..|.|       ++.++||||+|.+.+.+..|  +++..|++ +
T Consensus        15 ~~~~~~~l~V~nLp~~~t~~~l~~~--F~~~-G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~   89 (100)
T 2j76_E           15 PKSPPYTAFLGNLPYDVTEESIKEF--FRGL-N--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR   89 (100)
T ss_dssp             -----CEEEESCCSSCCSSSHHHHH--SCSS-C--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHH--HHhc-C--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence            3455577999999999999876551  1111 2  444443       45688999999996665544  45555543 4


Q ss_pred             ccCC
Q 019677          288 AVPP  291 (337)
Q Consensus       288 tvv~  291 (337)
                      +.|.
T Consensus        90 l~V~   93 (100)
T 2j76_E           90 IRVD   93 (100)
T ss_dssp             CCCE
T ss_pred             EEEE
Confidence            4443

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=95.48  E-value=0.0016  Score=49.36  Aligned_cols=66  Identities=9%  Similarity=-0.101  Sum_probs=43.8

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ...|||||||+.++++.|.+.  +...   +|..+.+.+.++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~--F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~   74 (88)
T 1wg1_A            5 SSGILVKNLPQDSNCQEVHDL--LKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL   74 (88)
T ss_dssp             CCCEEEESCCSSCCHHHHHHH--TCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHH--HhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence            456899999999998775541  1111   3444555588999999999977766664   4544 444555543

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.47  E-value=0.0014  Score=50.80  Aligned_cols=70  Identities=10%  Similarity=-0.044  Sum_probs=45.9

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhhh--hccCCcccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHDE--AMFGASAVP  290 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv  290 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      .+.+++||||+|.+.+.+..|+..  .+.|.++.|
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v   87 (103)
T 2cqg_A           13 QKTSDLIVLGLPWKTTEQDLKEYFSTFG-----EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDC   87 (103)
T ss_dssp             CCCCCEEEESCCSSCCHHHHHHHHGGGS-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEE
T ss_pred             CCCCEEEEEcCCCcCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEE
Confidence            33456999999999998876662 1111     222332      466788999999998887777762  235556655


Q ss_pred             CCCC
Q 019677          291 PSVS  294 (337)
Q Consensus       291 ~~t~  294 (337)
                      ....
T Consensus        88 ~~a~   91 (103)
T 2cqg_A           88 KLPN   91 (103)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            5443

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.47  E-value=0.0029  Score=49.11  Aligned_cols=66  Identities=9%  Similarity=0.009  Sum_probs=42.5

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHH--hhhhcc-CCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAA--HDEAMF-GASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA--~Dgi~f-G~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+.  +... +  |+.|.|       +..++||||+|.+.+.+..|  +++..| |.++.|.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~--F~~~-G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~   89 (104)
T 1wi8_A           15 PYTAFLGNLPYDVTEESIKEF--FRGL-N--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD   89 (104)
T ss_dssp             CEEEEEESCCSSCCHHHHHHH--TTTS-C--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred             CCEEEEeCCCCcCCHHHHHHH--HHHC-C--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence            356899999999998876551  1111 2  444443       56688999999997665555  455544 4455554


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      .
T Consensus        90 ~   90 (104)
T 1wi8_A           90 V   90 (104)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=94.46  E-value=0.0024  Score=50.63  Aligned_cols=73  Identities=12%  Similarity=-0.024  Sum_probs=45.4

Q ss_pred             cccccCCcccccccccCCccch-hhhhhcc-----CCceeEE----ecCCcccchhhhhhhHhhHHHHh---hhhc-cCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAE-----DDAALVK----HIGQSFRFSAIEARREEQIKAAH---DEAM-FGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie-----~Dpvl~~----qInqsk~fA~vEFKseetvalA~---Dgi~-fG~  286 (337)
                      ....|||+|||+.++++.|.+. ...-.+.     +.|++.+    ..+..++||||+|.+.+.+..|+   ++.. .|.
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   85 (116)
T 2lcw_A            6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN   85 (116)
Confidence            3456999999999999987772 1111111     1221222    24577899999999977766554   4544 455


Q ss_pred             cccCCCC
Q 019677          287 SAVPPSV  293 (337)
Q Consensus       287 ptvv~~t  293 (337)
                      ++.|...
T Consensus        86 ~l~V~~a   92 (116)
T 2lcw_A           86 PIKVSFA   92 (116)
Confidence            6666543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.42  E-value=0.002  Score=51.26  Aligned_cols=55  Identities=9%  Similarity=-0.185  Sum_probs=38.5

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHhh
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~D  280 (337)
                      ....|||||||+.++++.|.+.- ..    | +|..|.|     +.+++||||+|.+.+.+..|+.
T Consensus        10 ~~~~lfV~~Lp~~~te~~L~~~F~~~----G-~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~   70 (103)
T 1s79_A           10 KNRSVYIKGFPTDATLDDIKEWLEDK----G-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE   70 (103)
T ss_dssp             GGGCEEEECCCTTCCHHHHHHHHHTS----S-CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHhhc----C-CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence            34679999999999988766511 11    0 2333332     6689999999999887776764

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=95.41  E-value=0.004  Score=49.80  Aligned_cols=68  Identities=13%  Similarity=-0.027  Sum_probs=44.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++..| |.++
T Consensus        20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   94 (126)
T 3ex7_B           20 VEGWILFVTGVHEEATEEDIHDKFAEYG-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI   94 (126)
T ss_dssp             SSSEEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence            33456999999999998876662 1111     233333      4456899999999977766554   45554 4555


Q ss_pred             cCCC
Q 019677          289 VPPS  292 (337)
Q Consensus       289 vv~~  292 (337)
                      .|..
T Consensus        95 ~v~~   98 (126)
T 3ex7_B           95 SVDW   98 (126)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=95.40  E-value=0.0027  Score=47.83  Aligned_cols=71  Identities=14%  Similarity=-0.028  Sum_probs=43.3

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ..+-.+. +..+....+..++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~   82 (92)
T 2dgv_A            7 GACQIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI   82 (92)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            4466899999999998876652 1111000 11122234567899999999977766554   4544 455555543

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=95.39  E-value=0.004  Score=48.24  Aligned_cols=66  Identities=14%  Similarity=-0.000  Sum_probs=42.7

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ...-     +|..|.      ++..++||||+|.+.+.+..|+   ++..| |.++.
T Consensus        22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   96 (106)
T 1p27_B           22 EGWILFVTGVHEEATEEDIHDKFAEYG-----EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS   96 (106)
T ss_dssp             TBEEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhccC-----CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence            3456999999999998876652 1111     233333      3567899999999977766554   45544 44554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus        97 V~   98 (106)
T 1p27_B           97 VD   98 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=95.38  E-value=0.002  Score=50.79  Aligned_cols=57  Identities=9%  Similarity=-0.075  Sum_probs=39.9

Q ss_pred             ccccccCCcccccccccCCccch-hhh---hh----ccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEI---EA----AEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~L---ea----ie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      .....|||+|||+.++++.|.+. ...   ..    +.-|+    .++++++||||+|.+.+.+..|++
T Consensus         7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~----~tg~srG~aFV~f~~~~~A~~Ai~   71 (95)
T 2lkz_A            7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK----QTQQNRGFAFVQLSSAMDASQLLQ   71 (95)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS----SSSSCSSEEEEECSSSHHHHHHHH
T ss_pred             CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC----CCCCCceEeEEEECCHHHHHHHHH
Confidence            34456999999999999987772 111   10    11222    268899999999999777777765

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.37  E-value=0.0037  Score=47.98  Aligned_cols=68  Identities=10%  Similarity=-0.005  Sum_probs=44.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptv  289 (337)
                      .....|||+|||+.++++.|.+. ...     -+|..|.      .+..++||||+|.+.+.+..|++  +.. .|.++.
T Consensus         8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~   82 (99)
T 2dgs_A            8 SKSNKIFVGGIPHNCGETELREYFKKF-----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVE   82 (99)
T ss_dssp             SSCCEEEEESCCSSCCHHHHHHHHSSS-----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEE
Confidence            34467999999999998876551 111     1233333      35678999999999777666653  433 455555


Q ss_pred             CCC
Q 019677          290 PPS  292 (337)
Q Consensus       290 v~~  292 (337)
                      |..
T Consensus        83 V~~   85 (99)
T 2dgs_A           83 VKR   85 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.35  E-value=0.0049  Score=47.22  Aligned_cols=66  Identities=11%  Similarity=-0.106  Sum_probs=44.4

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccC---CcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFG---ASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG---~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+.-  .  .--+|..+.+...++||||+|.+.+.+..|+   ++..|.   .++.|.
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F--~--~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~   88 (97)
T 1why_A           17 TTRLWVGGLGPNTSLAALAREF--D--RFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD   88 (97)
T ss_dssp             CSCEEEECCCSSCCHHHHHHHH--H--TTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHH--H--hcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence            3579999999999888765521  1  1114666777777999999999977665554   455543   455444

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=95.34  E-value=0.0015  Score=47.44  Aligned_cols=51  Identities=12%  Similarity=-0.003  Sum_probs=35.5

Q ss_pred             cCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh
Q 019677          225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D  280 (337)
                      |||+|||+.++++.+.+. ...-     ++..+      ..+..++||||+|.+.+.+..|+.
T Consensus         2 l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~   59 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFGGFG-----EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME   59 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHHHHS-----CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred             EEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence            689999999998886662 1111     12222      246778999999999877776764

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.30  E-value=0.0022  Score=49.73  Aligned_cols=69  Identities=9%  Similarity=-0.015  Sum_probs=44.4

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv  290 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+.  +.. .|.++.|
T Consensus        15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V   89 (105)
T 2dh8_A           15 EIGKLFVGGLDWSTTQETLRSYFSQYG-----EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDP   89 (105)
T ss_dssp             SSSEECCBSCCTTCCHHHHHHHHHTTS-----CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEE
Confidence            3456999999999998876662 1111     222222      45677899999999777665553  444 4556666


Q ss_pred             CCCC
Q 019677          291 PSVS  294 (337)
Q Consensus       291 ~~t~  294 (337)
                      ....
T Consensus        90 ~~a~   93 (105)
T 2dh8_A           90 KPCT   93 (105)
T ss_dssp             CCSC
T ss_pred             EEcc
Confidence            5443

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=95.29  E-value=0.0048  Score=55.48  Aligned_cols=85  Identities=9%  Similarity=-0.074  Sum_probs=55.8

Q ss_pred             CCChHHHHHHHHhhhhccccccccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh
Q 019677          200 HMTPAAIVKAKMKLQLAETANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH  279 (337)
Q Consensus       200 ~~TPAEkvkar~q~QL~~tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~  279 (337)
                      +|+|.+.....-  .+.........|||+|||+.++++.|.+.  +... |  ++.|.++.+++||||+|.+.+.+..|+
T Consensus         2 ~~~~~e~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~l~~~--F~~~-G--i~~~~~~~~~g~afV~f~~~~~A~~A~   74 (284)
T 3smz_A            2 MLDPEEIRKRLE--HTERQFRNRRKILIRGLPGDVTNQEVHDL--LSDY-E--LKYCFVDKYKGTAFVTLLNGEQAEAAI   74 (284)
T ss_dssp             CCCHHHHHHHHH--HHHHHHHCCCEEEEECCCTTCCHHHHHHH--TTTS-C--EEEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred             CCChHHHHHHHh--hhhccCCCCCEEEEeCCCCCCCHHHHHHH--HHHc-C--CEEEEEecCCCEEEEEeCCHHHHHHHH
Confidence            567766554311  12233344567999999999998876551  1222 3  778888999999999999977776665


Q ss_pred             ---hhhc-cCCcccCC
Q 019677          280 ---DEAM-FGASAVPP  291 (337)
Q Consensus       280 ---Dgi~-fG~ptvv~  291 (337)
                         ++.. .|.++.|.
T Consensus        75 ~~l~~~~~~g~~i~v~   90 (284)
T 3smz_A           75 NAFHQSRLRERELSVQ   90 (284)
T ss_dssp             HHHTTCEETTEECEEE
T ss_pred             HHcCCCeeCCeEEEEE
Confidence               4444 44455443

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.29  E-value=0.0035  Score=48.44  Aligned_cols=67  Identities=12%  Similarity=-0.071  Sum_probs=43.3

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ..+     -+|..+.      ++..++||||+|.+.+.+..|+   ++.. .|.++.
T Consensus        12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~   86 (103)
T 2dnm_A           12 GMITLKVDNLTYRTSPDSLRRVFEKY-----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR   86 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHTTT-----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            3467999999999998876662 111     1233333      3567899999999966655554   4544 455555


Q ss_pred             CCC
Q 019677          290 PPS  292 (337)
Q Consensus       290 v~~  292 (337)
                      |..
T Consensus        87 V~~   89 (103)
T 2dnm_A           87 VQV   89 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.29  E-value=0.0042  Score=47.93  Aligned_cols=69  Identities=12%  Similarity=-0.055  Sum_probs=45.7

Q ss_pred             cccccCCcccccccccCCccch-hh-hhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh---hh--ccCCcc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EE-IEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD---EA--MFGASA  288 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~-Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D---gi--~fG~pt  288 (337)
                      ....|||+|||+.++++.|.+. .. .-     +|..|.     .+..++||||+|.+.+.+..|+.   +.  +.|.++
T Consensus         8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G-----~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l   82 (104)
T 2dhg_A            8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP-----SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV   82 (104)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHCT-----TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhCC-----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence            4467999999999998876662 11 21     233333     45678999999999777666654   43  456666


Q ss_pred             cCCCCC
Q 019677          289 VPPSVS  294 (337)
Q Consensus       289 vv~~t~  294 (337)
                      .|....
T Consensus        83 ~v~~a~   88 (104)
T 2dhg_A           83 RLSVAI   88 (104)
T ss_dssp             CCCBCC
T ss_pred             EEEEcc
Confidence            666443

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=95.28  E-value=0.0017  Score=50.26  Aligned_cols=68  Identities=13%  Similarity=-0.017  Sum_probs=44.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cC---Ccc
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FG---ASA  288 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG---~pt  288 (337)
                      ...|||+|||+.++++.|.+. ...-     +|..|.     .+..++||||+|.+.+.+..|+   ++.. +|   .++
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l   89 (105)
T 2dnh_A           15 DRKLFVGMLNKQQSEEDVLRLFQPFG-----VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL   89 (105)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence            456999999999998876652 1111     133333     3456899999999977776665   4544 55   566


Q ss_pred             cCCCCC
Q 019677          289 VPPSVS  294 (337)
Q Consensus       289 vv~~t~  294 (337)
                      .|....
T Consensus        90 ~V~~a~   95 (105)
T 2dnh_A           90 VVKFAD   95 (105)
T ss_dssp             EEEESC
T ss_pred             EEEECc
Confidence            665433

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=95.28  E-value=0.0019  Score=53.96  Aligned_cols=72  Identities=13%  Similarity=0.022  Sum_probs=43.8

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccC-CcccC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFG-ASAVP  290 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG-~ptvv  290 (337)
                      ......|||+||||.++++.|.+- ..+.+++.+..|.. ..+++++||||+|.+.+.+..|+.  +..|+ -++.|
T Consensus        39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V  115 (126)
T 2hgm_A           39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEV  115 (126)
T ss_dssp             SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence            344566999999999999886661 12211100111111 136789999999999877777764  43443 34443

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=95.27  E-value=0.0057  Score=48.91  Aligned_cols=61  Identities=13%  Similarity=0.012  Sum_probs=41.2

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ....|||+|||+.++++.|.+.-  ... + +|+.|.|..+ +||||+|.+.+.+..|+   ++..|++
T Consensus        15 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-G-~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g   78 (115)
T 3beg_B           15 SENRVVVSGLPPSGSWQDLKDHM--REA-G-DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRS   78 (115)
T ss_dssp             --CCEEEEECCSSCCTTHHHHHH--GGG-S-CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHH--Hhc-C-CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            34679999999999998866521  111 1 4666676655 99999999977665554   4655554

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.22  E-value=0.0019  Score=51.46  Aligned_cols=69  Identities=16%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhcc-CCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMF-GASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~f-G~ptvv  290 (337)
                      ...|||+|||+.++++.|.+. ..+..++.+..|.. ..+..++||||+|.+.+.+..|+.  +..| |-++.|
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v   88 (114)
T 2cpy_A           15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV   88 (114)
T ss_dssp             CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred             ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence            456899999999999886662 11211111122221 146789999999999777766653  4444 344444

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=95.22  E-value=0.003  Score=52.37  Aligned_cols=65  Identities=11%  Similarity=-0.036  Sum_probs=42.9

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      ...|||||||+.++++.|.+.- ..-     +|..|.      .+.+++||||+|.+.+.+..|+   ++..| |.++.|
T Consensus        70 ~~~l~v~nl~~~~~~~~l~~~F~~~G-----~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v  144 (158)
T 2kn4_A           70 MTSLKVDNLTYRTSPDTLRRVFEKYG-----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV  144 (158)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHHHHS-----CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence            3568999999999988866621 111     122222      5678899999999977766665   45444 455555


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus       145 ~  145 (158)
T 2kn4_A          145 Q  145 (158)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.22  E-value=0.0051  Score=48.10  Aligned_cols=69  Identities=13%  Similarity=-0.095  Sum_probs=44.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ..+     -+|..|.|   ...++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        21 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   95 (109)
T 1x4a_A           21 NDCRIYVGNLPPDIRTKDIEDVFYKY-----GAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF   95 (109)
T ss_dssp             CSSEEEEESCCTTCCHHHHHHHHGGG-----SCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            4467999999999998876652 111     13444443   345779999999977766665   4444 555666654


Q ss_pred             CC
Q 019677          293 VS  294 (337)
Q Consensus       293 t~  294 (337)
                      ..
T Consensus        96 a~   97 (109)
T 1x4a_A           96 PR   97 (109)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.21  E-value=0.002  Score=49.31  Aligned_cols=66  Identities=6%  Similarity=-0.028  Sum_probs=40.8

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      .....|||||||+.++++.|.+. ...-.+..+..+..  ..+..++||||+|.+.+.+..|+   ++..|+
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~   78 (99)
T 2div_A            7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP   78 (99)
T ss_dssp             SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence            34567999999999999887662 11111110111111  24567899999999977766665   454443

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.17  E-value=0.0026  Score=49.23  Aligned_cols=69  Identities=9%  Similarity=-0.089  Sum_probs=44.9

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.    .+..++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~   88 (103)
T 2d9p_A           14 QVVNLYVKNLDDGIDDERLRKAFSPFG-----TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA   88 (103)
T ss_dssp             SCCCEEEECCCTTCCHHHHHHTTTTTS-----CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence            3456899999999998876552 1111     233333    4477999999999977766664   4444 55666665


Q ss_pred             CCC
Q 019677          292 SVS  294 (337)
Q Consensus       292 ~t~  294 (337)
                      ...
T Consensus        89 ~a~   91 (103)
T 2d9p_A           89 LAQ   91 (103)
T ss_dssp             ECS
T ss_pred             Eec
Confidence            433

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.14  E-value=0.0025  Score=48.68  Aligned_cols=69  Identities=10%  Similarity=0.002  Sum_probs=43.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeE--EecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV--KHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~--~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ..+-.+. +.++.  ...+..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~   90 (98)
T 2cqp_A           15 PTIIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV   90 (98)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHTTTSCCCT-TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHcCCcc-ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence            456899999999998876652 1111111 11222  235678999999999977776665   34444 4444443

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.13  E-value=0.0014  Score=52.08  Aligned_cols=74  Identities=16%  Similarity=0.023  Sum_probs=47.2

Q ss_pred             hhhccccccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhh
Q 019677          213 LQLAETANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEA  282 (337)
Q Consensus       213 ~QL~~tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi  282 (337)
                      +.++........|||+|||+.++++.+.+. ..+-     +|..+.      .+..++||||+|.+.+.+..|+   ++.
T Consensus        17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~   91 (108)
T 2jrs_A           17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG-----RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF   91 (108)
T ss_dssp             CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS-----CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence            334455555677999999999998876552 1111     232332      3567899999999977766665   455


Q ss_pred             c-cCCcccCC
Q 019677          283 M-FGASAVPP  291 (337)
Q Consensus       283 ~-fG~ptvv~  291 (337)
                      . .|.++.|.
T Consensus        92 ~i~g~~l~V~  101 (108)
T 2jrs_A           92 ELAGRPMKVG  101 (108)
T ss_dssp             CSSSSCCEEE
T ss_pred             EECCEEEEEE
Confidence            4 44555544

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.12  E-value=0.0021  Score=50.34  Aligned_cols=70  Identities=14%  Similarity=0.045  Sum_probs=42.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccCC-cccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFGA-SAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG~-ptvv  290 (337)
                      ....|||+|||+.++++.|.+. ..+-.+.....|.. ..++.++||||+|.+.+.+..|+.  +..|++ ++.|
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v   88 (104)
T 1wg5_A           14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI   88 (104)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence            3456899999999998876662 11111110011111 256789999999999877766654  444543 4433

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=95.10  E-value=0.0026  Score=48.25  Aligned_cols=70  Identities=11%  Similarity=0.027  Sum_probs=42.9

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCcee-EEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAAL-VKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl-~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ...-.+..--++ ....+..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~   90 (95)
T 2ek1_A           15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS   90 (95)
T ss_dssp             CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence            356899999999998876662 122112211121 1235678999999999977666554   45544 4444443

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.10  E-value=0.0018  Score=49.89  Aligned_cols=68  Identities=16%  Similarity=0.037  Sum_probs=44.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++.. .|.++
T Consensus        10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   84 (102)
T 2cqb_A           10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI   84 (102)
T ss_dssp             CCCSCEEEESCCSSCCHHHHHHHHTTTS-----CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhccC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence            34567999999999998876652 1111     122222      4567999999999977766665   4554 45555


Q ss_pred             cCCC
Q 019677          289 VPPS  292 (337)
Q Consensus       289 vv~~  292 (337)
                      .|..
T Consensus        85 ~V~~   88 (102)
T 2cqb_A           85 RVNL   88 (102)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=95.09  E-value=0.0024  Score=51.42  Aligned_cols=67  Identities=10%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhcc-CCce-eEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAA-LVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie-~Dpv-l~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      .....|+|+|||+.++++.|.+. ..+..+. ...| |.. ..++.++||||+|.+.+.+..|+  ++..|++
T Consensus        15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~g   87 (118)
T 2db1_A           15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGH   87 (118)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETT
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence            34556899999999999886662 1111100 0111 111 13678999999999977776665  4555543

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.08  E-value=0.0018  Score=50.17  Aligned_cols=69  Identities=17%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+.   +.. .|.++
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l   87 (105)
T 1x5u_A           13 NQDATVYVGGLDEKVSEPLLWELFLQAG-----PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI   87 (105)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence            34466999999999998876652 1111     233333      45577899999999777766654   444 55566


Q ss_pred             cCCCC
Q 019677          289 VPPSV  293 (337)
Q Consensus       289 vv~~t  293 (337)
                      .|...
T Consensus        88 ~v~~a   92 (105)
T 1x5u_A           88 RVNKA   92 (105)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            55543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.05  E-value=0.0033  Score=48.02  Aligned_cols=68  Identities=15%  Similarity=-0.003  Sum_probs=43.4

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEec---------CCcccchhhhhhhHhhHHHHh---hhhc-cCCc
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---------GQSFRFSAIEARREEQIKAAH---DEAM-FGAS  287 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---------nqsk~fA~vEFKseetvalA~---Dgi~-fG~p  287 (337)
                      ...|||+|||+.++++.|.+. ..+-     +|..|.|         +..++||||+|.+.+.+..|+   ++.. .|.+
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~   79 (98)
T 2cpf_A            5 SSGLFIKNLNFSTTEETLKGVFSKVG-----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK   79 (98)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence            456899999999998876662 1111     2233322         267899999999977766665   4444 4555


Q ss_pred             ccCCCCC
Q 019677          288 AVPPSVS  294 (337)
Q Consensus       288 tvv~~t~  294 (337)
                      +.|....
T Consensus        80 l~V~~a~   86 (98)
T 2cpf_A           80 LEVRISE   86 (98)
T ss_dssp             CEEECSS
T ss_pred             EEEEEcc
Confidence            6555443

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.05  E-value=0.0023  Score=49.30  Aligned_cols=67  Identities=10%  Similarity=-0.016  Sum_probs=43.1

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..+.      .+..++||||+|.+.+.+..|+   ++.. .|.++
T Consensus        10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   84 (102)
T 1x5s_A           10 SDEGKLFVGGLSFDTNEQSLEQVFSKYG-----QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI   84 (102)
T ss_dssp             CCCSEEEEESCCTTCCHHHHHHHHHHHS-----CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence            34567999999999998886662 1111     122222      4557889999999977766665   4544 45555


Q ss_pred             cCC
Q 019677          289 VPP  291 (337)
Q Consensus       289 vv~  291 (337)
                      .|.
T Consensus        85 ~v~   87 (102)
T 1x5s_A           85 RVD   87 (102)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=95.04  E-value=0.0038  Score=50.79  Aligned_cols=71  Identities=11%  Similarity=-0.098  Sum_probs=45.2

Q ss_pred             ccccccccCCcccccccccCCccchhhhhhccCCceeEEec--CCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI--GQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP  291 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI--nqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~  291 (337)
                      .......|||||||+.++++.|.+.-  ... +..|..+.|  ..+++||||+|.+.+.+..|+   ++..|+ -++.|.
T Consensus        24 ~p~~~~~l~VgnLp~~~te~dL~~~F--~~~-G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~  100 (111)
T 2jvr_A           24 LPAKRYRITMKNLPEGCSWQDLKDLA--REN-SLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE  100 (111)
T ss_dssp             -CCCCEEEEEECSSCCCCHHHHHHHH--HHH-TCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHH--HHh-CCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence            34455679999999999988766621  110 112334444  368999999999977766665   455554 454443

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.00  E-value=0.0018  Score=51.20  Aligned_cols=64  Identities=11%  Similarity=0.005  Sum_probs=40.5

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      ....|||+|||+.++++.|.+. ..+-.+  +..|.. ..+++++||||+|.+.+.+..|+  ++..|+.
T Consensus        14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g   81 (102)
T 1wez_A           14 TGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQH   81 (102)
T ss_dssp             SSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECC
Confidence            3456899999999998876661 111111  112222 25678899999999977766665  4555543

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=94.97  E-value=0.0037  Score=49.20  Aligned_cols=67  Identities=10%  Similarity=0.093  Sum_probs=40.8

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhcc-CCce-eEEe-cCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAE-DDAA-LVKH-IGQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie-~Dpv-l~~q-Inqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      .....|||+|||+.++++.|.+- ..+..+. ...| |..+ .++.++||||+|.+.+.+..|+  ++..|++
T Consensus         9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g   81 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQ   81 (107)
T ss_dssp             SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSS
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCC
Confidence            34456899999999999886661 1111000 0111 1111 2678899999999977766665  4555543

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=94.97  E-value=0.0027  Score=50.15  Aligned_cols=71  Identities=11%  Similarity=-0.109  Sum_probs=43.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ..+-.+. +..|..  ..+..++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~  101 (115)
T 2cpz_A           24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL  101 (115)
T ss_dssp             TTCCEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            3467999999999998876662 1111010 111111  14667899999999977766665   4554 455555553

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.96  E-value=0.0047  Score=47.24  Aligned_cols=69  Identities=9%  Similarity=-0.099  Sum_probs=44.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ...     -+|..|.      .+..++||||+|.+.+.+..|+   ++.. .|.++.
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   81 (99)
T 1whw_A            7 GSGRLFVRNLSYTSSEEDLEKLFSAY-----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH   81 (99)
T ss_dssp             SCEEEEEECCCTTCCHHHHHHHHHTT-----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence            3456899999999998876652 111     1233343      3557799999999977766665   4544 455665


Q ss_pred             CCCCC
Q 019677          290 PPSVS  294 (337)
Q Consensus       290 v~~t~  294 (337)
                      |....
T Consensus        82 V~~a~   86 (99)
T 1whw_A           82 VLPST   86 (99)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            55433

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=94.95  E-value=0.0022  Score=49.69  Aligned_cols=69  Identities=12%  Similarity=-0.048  Sum_probs=43.9

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc----cCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM----FGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~----fG~  286 (337)
                      ....|||+|||+.++++.|.+. ...-     +|..|.      ++..++||||+|.+.+.+..|+   ++..    .|.
T Consensus        12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~   86 (106)
T 2dgp_A           12 DAIKLFIGQIPRNLDEKDLKPLFEEFG-----KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR   86 (106)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHHHHS-----CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence            3456999999999999876662 1111     122222      4668899999999977766664   3433    355


Q ss_pred             cccCCCCC
Q 019677          287 SAVPPSVS  294 (337)
Q Consensus       287 ptvv~~t~  294 (337)
                      ++.|....
T Consensus        87 ~l~v~~a~   94 (106)
T 2dgp_A           87 PIQVKPAD   94 (106)
T ss_dssp             CCEEEECC
T ss_pred             eEEEEECC
Confidence            66655433

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=94.93  E-value=0.0032  Score=50.57  Aligned_cols=67  Identities=12%  Similarity=-0.062  Sum_probs=43.4

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ....|||+|||+.++++.|.+. ...-     +|..|.     .+..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus         6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V   80 (116)
T 2fy1_A            6 HPGKLFIGGLNRETNEKMLKAVFGKHG-----PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV   80 (116)
T ss_dssp             SCCEEEEECCTTTCCHHHHHHHHHTSS-----CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            3456899999999998876652 1111     122222     4567899999999977766665   4554 4556655


Q ss_pred             CC
Q 019677          291 PS  292 (337)
Q Consensus       291 ~~  292 (337)
                      ..
T Consensus        81 ~~   82 (116)
T 2fy1_A           81 EQ   82 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=94.91  E-value=0.0019  Score=48.31  Aligned_cols=65  Identities=14%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHH--hhhhccC-CcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAA--HDEAMFG-ASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA--~Dgi~fG-~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ...-     +|..+      ..+..++||||+|.+.+.+..|  +++..|+ .++.|.
T Consensus         6 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~   80 (89)
T 3ucg_A            6 ARSIYVGNVDYGATAEELEAHFHGCG-----SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI   80 (89)
T ss_dssp             HTEEEEESCCTTCCHHHHHHHHGGGC-----CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEE
Confidence            356899999999998876651 1111     12222      2556799999999997665555  4455544 444443

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.89  E-value=0.0044  Score=48.67  Aligned_cols=72  Identities=11%  Similarity=-0.071  Sum_probs=44.2

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccC-------CceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAED-------DAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~-------Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~  286 (337)
                      ....|||+|||+.++++.|.+. ...-.+..       +..|..  ..+..++||||+|.+.+.+..|+   ++.. .|.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~   93 (113)
T 2cpe_A           14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS   93 (113)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence            4456999999999998876662 12211211       111111  24567899999999977766554   4554 445


Q ss_pred             cccCCC
Q 019677          287 SAVPPS  292 (337)
Q Consensus       287 ptvv~~  292 (337)
                      ++.|..
T Consensus        94 ~l~V~~   99 (113)
T 2cpe_A           94 KLKVSL   99 (113)
T ss_dssp             ECEEEC
T ss_pred             EEEEEE
Confidence            555543

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=94.89  E-value=0.0026  Score=48.95  Aligned_cols=68  Identities=13%  Similarity=0.027  Sum_probs=42.1

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhcc-----CCceeEE----ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAE-----DDAALVK----HIGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie-----~Dpvl~~----qInqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ......|||||||+.++++.|.+. ...-.+.     +.|++.+    ..+..++||||+|.+.+.+..|+   ++..|+
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~   89 (99)
T 2la6_A           10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS   89 (99)
T ss_dssp             CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence            344566999999999998876662 1111111     1222222    24567899999999977766554   455544


Q ss_pred             C
Q 019677          286 A  286 (337)
Q Consensus       286 ~  286 (337)
                      +
T Consensus        90 g   90 (99)
T 2la6_A           90 G   90 (99)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.86  E-value=0.002  Score=49.68  Aligned_cols=69  Identities=17%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+.-  ... ....+..  ..+..++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   88 (102)
T 2fc8_A           14 PSKTLFVKGLSEDTTEETLKESF--DGS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW   88 (102)
T ss_dssp             CCSSEEEECCCTTCCHHHHHHTS--TTC-SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCccCHHHHHHHh--cCC-eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            44669999999999988766521  111 1122222  25567899999999977766654   4544 455555543

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=94.86  E-value=0.0029  Score=47.08  Aligned_cols=60  Identities=7%  Similarity=-0.157  Sum_probs=36.4

Q ss_pred             cccCCcccccccc------cCCccchhhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHhh---hhccCC
Q 019677          223 ETKGSGWERFEFD------KDAPLDDEEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAHD---EAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~t------EealldN~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~D---gi~fG~  286 (337)
                      ..|||||||+.++      ++.|.+.  +...  -+|..+.    .+.+++||||+|.+.+.+..|+.   +..|++
T Consensus         2 ~~l~V~nLp~~~~~~~~~t~~~l~~~--F~~~--G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g   74 (81)
T 2krb_A            2 SVIVVDNVPQVGPDRLEKLKNVIHKI--FSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK   74 (81)
T ss_dssp             CEEEEESCCCCCTTTHHHHHHHHHHH--HHTT--CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS
T ss_pred             CEEEEeCCCCCcHHHHHHHHHHHHHH--Hhhc--CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC
Confidence            3589999999773      3333321  1100  1233333    45789999999999887777754   544443

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=94.86  E-value=0.0018  Score=55.20  Aligned_cols=69  Identities=7%  Similarity=-0.023  Sum_probs=43.1

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-CcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv  290 (337)
                      ....|||||||+.++++.|.+.-  .......|+.|.      ++.+++||||+|.+.+.+..|+   ++..|+ -++.|
T Consensus        54 ~~~~lfVgnLp~~~te~~L~~~F--~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V  131 (156)
T 3n9u_C           54 RRAAVYVGSFSWWTTDQQLIQVI--RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV  131 (156)
T ss_dssp             --CEEEEECCCTTCCHHHHHHHH--HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHH--HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEE
Confidence            44679999999999998876621  111000122222      5678999999999977776665   445544 45544


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus       132 ~  132 (156)
T 3n9u_C          132 R  132 (156)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=94.85  E-value=0.0073  Score=47.52  Aligned_cols=67  Identities=6%  Similarity=-0.152  Sum_probs=43.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ...     -+|..|.+   ..+++||||+|.+.+.+..|+   ++..| |.++.|..
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   81 (115)
T 3lqv_A            7 VNRILYIRNLPYKITAEEMYDIFGKY-----GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY   81 (115)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHTT-----SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            3457999999999998876552 111     12344443   567899999999977766554   45554 45555543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.85  E-value=0.0068  Score=47.15  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=43.6

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHhhh-----hc-cCCc
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAHDE-----AM-FGAS  287 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~Dg-----i~-fG~p  287 (337)
                      ...|||||||+.++++.|.+. ...    +..|..+.+       +..++||||+|.+.+.+..|+..     .. .|.+
T Consensus         8 ~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~   83 (109)
T 2dis_A            8 NCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ   83 (109)
T ss_dssp             SEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence            456899999999998887662 111    111333333       37899999999998777766542     33 4555


Q ss_pred             ccCCC
Q 019677          288 AVPPS  292 (337)
Q Consensus       288 tvv~~  292 (337)
                      +.|..
T Consensus        84 l~V~~   88 (109)
T 2dis_A           84 IAVDW   88 (109)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            55543

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.85  E-value=0.0041  Score=47.02  Aligned_cols=61  Identities=8%  Similarity=-0.031  Sum_probs=40.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEec------CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      .....|||+|||+.++++.|.+. ...     -+|..+.+      +..++||||+|.+.+.+..|+   ++..|+
T Consensus        14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   84 (94)
T 2e5h_A           14 PSKSTVYVSNLPFSLTNNDLYRIFSKY-----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF   84 (94)
T ss_dssp             CCTTSEEEESCCTTSCHHHHHHHTTTT-----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence            34467999999999998876552 111     12333333      556889999999977766555   455443

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.85  E-value=0.0059  Score=47.15  Aligned_cols=67  Identities=12%  Similarity=0.031  Sum_probs=43.3

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      .....|||+|||+.++++.|.+. ..+     -+|..|.|    +..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   87 (103)
T 2cq3_A           13 STPKRLHVSNIPFRFRDPDLRQMFGQF-----GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV   87 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGGGT-----SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhc-----CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            33466899999999998876552 111     12434443    345889999999977766665   4544 4555555


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        88 ~   88 (103)
T 2cq3_A           88 N   88 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.85  E-value=0.0055  Score=48.18  Aligned_cols=60  Identities=12%  Similarity=-0.022  Sum_probs=40.8

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAMFG  285 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~fG  285 (337)
                      ....|||+|||+.++++.|.+.-  ... + +|+.|.|..+ +||||+|.+.+.+..|+.   +..|.
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F--~~~-G-~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~   76 (108)
T 1x4c_A           14 SENRVVVSGLPPSGSWQDLKDHM--REA-G-DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFR   76 (108)
T ss_dssp             CCCEEEEESCCSSCCHHHHHHHH--GGG-S-CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHH--Hhc-C-CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence            34579999999999988765521  111 1 3666666555 999999999777666654   54443

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.81  E-value=0.0049  Score=46.54  Aligned_cols=67  Identities=9%  Similarity=-0.053  Sum_probs=42.6

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~pt  288 (337)
                      .....|||+|||+.++++.|.+. ...-     +|..+.      .+..++||||+|.+.+.+..|+   ++..| |.++
T Consensus        13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l   87 (95)
T 2cqc_A           13 DPNCCLGVFGLSLYTTERDLREVFSKYG-----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI   87 (95)
T ss_dssp             CGGGCEEEESCCSSCCHHHHHHHHHTTS-----CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            34466899999999998876652 1111     233333      3567889999999977766664   44444 4454


Q ss_pred             cCC
Q 019677          289 VPP  291 (337)
Q Consensus       289 vv~  291 (337)
                      .|.
T Consensus        88 ~v~   90 (95)
T 2cqc_A           88 RVS   90 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.78  E-value=0.0026  Score=46.30  Aligned_cols=56  Identities=5%  Similarity=0.037  Sum_probs=36.3

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D  280 (337)
                      .|+|+|+|+.++++.+.+. ...-.+ .+..+..  ..+.+++||||+|.+.+.+..|+.
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~   60 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA   60 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCC-CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHH
Confidence            4789999999998876651 111101 1111111  246788999999999877777765

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=94.77  E-value=0.0048  Score=50.70  Aligned_cols=69  Identities=9%  Similarity=-0.107  Sum_probs=44.6

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++.. .|.++
T Consensus        44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l  118 (129)
T 2kxn_B           44 DPNCCLGVFGLSLYTTERDLREVFSKYG-----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI  118 (129)
T ss_dssp             CCSSCBCEETCTTSCCHHHHHHHHTTTS-----CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            33456999999999998876652 1111     233333      3578899999999977766665   4554 45556


Q ss_pred             cCCCC
Q 019677          289 VPPSV  293 (337)
Q Consensus       289 vv~~t  293 (337)
                      .|.-.
T Consensus       119 ~V~~a  123 (129)
T 2kxn_B          119 RVDFS  123 (129)
T ss_dssp             EESCC
T ss_pred             EEEEe
Confidence            55543

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.77  E-value=0.0018  Score=51.06  Aligned_cols=63  Identities=8%  Similarity=-0.149  Sum_probs=40.4

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHH--hhhhccC-CcccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAA--HDEAMFG-ASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA--~Dgi~fG-~ptvv  290 (337)
                      ..|||+|||+.++++.|.+. ..+-     .|..|.      ++..++||||+|.+.+.+..|  +++..|+ .++.|
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V   98 (114)
T 2cq4_A           26 RTVFCMQLAARIRPRDLEDFFSAVG-----KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIV   98 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhCC-----CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEE
Confidence            56899999999998876652 1110     233333      367789999999996665544  4555544 34433

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=94.76  E-value=0.0043  Score=51.67  Aligned_cols=67  Identities=10%  Similarity=-0.095  Sum_probs=43.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv  289 (337)
                      ....|+|+|||+.++++.|.+. ..+-     +|..|.      ++..++||||+|.+.+.+..|+   ++.. .|.++.
T Consensus        38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  112 (156)
T 1h2v_Z           38 KSCTLYVGNLSFYTTEEQIYELFSKSG-----DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR  112 (156)
T ss_dssp             TCCEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence            3467999999999998876662 1111     233333      3567899999999977766665   4444 455555


Q ss_pred             CCC
Q 019677          290 PPS  292 (337)
Q Consensus       290 v~~  292 (337)
                      |..
T Consensus       113 V~~  115 (156)
T 1h2v_Z          113 TDW  115 (156)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.76  E-value=0.0029  Score=47.13  Aligned_cols=61  Identities=3%  Similarity=-0.112  Sum_probs=40.3

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCCc
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGAS  287 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~p  287 (337)
                      ...|||+|||+.++++.|.+. ...-     +|..+.      .+..++||||+|.+.+.+..|+   ++..|++.
T Consensus         5 ~~~l~v~nlp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~   75 (85)
T 1x4e_A            5 SSGLYIRGLQPGTTDQDLVKLCQPYG-----KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ   75 (85)
T ss_dssp             CCEEEEESCCTTCCHHHHHTTSTTTS-----CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence            456899999999998876652 1111     233332      4567899999999977766554   46555543

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.75  E-value=0.0032  Score=47.79  Aligned_cols=71  Identities=13%  Similarity=0.054  Sum_probs=43.7

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~  292 (337)
                      ...|||+|||+.++++.|.+. ...-.+..-..|..  ..+..++||||+|.+.+.+..|+.   +.. .|.++.|..
T Consensus         5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   82 (96)
T 1x5t_A            5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY   82 (96)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            356899999999998876662 11111111101222  356789999999999777666654   444 455665553

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.74  E-value=0.0047  Score=51.07  Aligned_cols=66  Identities=11%  Similarity=-0.012  Sum_probs=42.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhc--c-CCceeEE-ecCCcccchhhhhhhHhhHHHHhh--hhccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAA--E-DDAALVK-HIGQSFRFSAIEARREEQIKAAHD--EAMFGA  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leai--e-~Dpvl~~-qInqsk~fA~vEFKseetvalA~D--gi~fG~  286 (337)
                      ....|||+||||.++++.|.+- ..+-.+  . .+..|.. ..+++++||||+|.+.+.+..|+.  +..|++
T Consensus        22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g   94 (123)
T 2dha_A           22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK   94 (123)
T ss_dssp             SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence            3456899999999999987772 122111  1 1222222 256789999999999777776664  444543

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=94.73  E-value=0.014  Score=50.65  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=43.5

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.     .+.+++||||+|.+.+.+..|+   ++..| |.++.
T Consensus        86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~  160 (177)
T 2f3j_A           86 ETGAKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD  160 (177)
T ss_dssp             TTCEEEEEECCCSCCCHHHHHHHHHHTS-----CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence            44567999999999998876652 1111     223333     3567899999999977766664   45444 44554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       161 V~  162 (177)
T 2f3j_A          161 IQ  162 (177)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=94.73  E-value=0.0061  Score=46.60  Aligned_cols=64  Identities=16%  Similarity=0.081  Sum_probs=41.8

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||||||+.++++.|.+. ...-     +|..+.      .+..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus         3 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   77 (96)
T 2x1f_A            3 RVVYLGSIPYDQTEEQILDLCSNVG-----PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCG   77 (96)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             cEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence            46899999999998876652 1111     233333      3566899999999977766655   45554 4455444

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=94.71  E-value=0.0018  Score=58.42  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             ccccCCcccccccccCCccch-hhhh--hccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIE--AAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Le--aie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~  291 (337)
                      ...|||+||++.++++.|.+. ..+-  .|. +..|..  .++++++||||+|.+.+.+..|+.   +.. .|-++.|.
T Consensus        68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~  145 (229)
T 3q2s_C           68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT  145 (229)
T ss_dssp             -CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence            346999999999999887662 1111  010 111222  256789999999999777776654   444 44555554

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.66  E-value=0.0073  Score=45.59  Aligned_cols=68  Identities=10%  Similarity=-0.093  Sum_probs=44.2

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhh-ccCCcccCCCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEA-MFGASAVPPSVS  294 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi-~fG~ptvv~~t~  294 (337)
                      ....|||+|||+.++++.|.+.-  ...  -+|..+.+.  ++||||+|.+.+.+..|+   ++. +.|.++.|....
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F--~~~--G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   78 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLF--EQY--GKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK   78 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHH--HTS--SCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHH--HhC--CCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence            34569999999999988765521  111  135555554  789999999977766655   454 455666555433

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=94.63  E-value=0.004  Score=52.63  Aligned_cols=69  Identities=10%  Similarity=-0.019  Sum_probs=42.5

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-cCCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-IGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP  290 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-Inqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv  290 (337)
                      .....|+|+|||+.++++.|.+. ..+-.+  +..|..+ .+++++||||+|.+.+.+..|+  ++..|+ -++.|
T Consensus        44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V  117 (139)
T 2hgn_A           44 TTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL  117 (139)
T ss_dssp             -CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEE
Confidence            34567999999999999887661 111111  1111111 3678999999999977776665  344444 34444

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=94.63  E-value=0.0056  Score=48.50  Aligned_cols=58  Identities=5%  Similarity=-0.064  Sum_probs=37.9

Q ss_pred             ccccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D  280 (337)
                      .......|||||||+.++++.|.+. ..+-     +|..|.      ++.+++||||+|.+.+.+..|+.
T Consensus        21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~   85 (109)
T 2rs2_A           21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFG-----EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA   85 (109)
T ss_dssp             -----CCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHccC-----CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHH
Confidence            3344567999999999998876652 1111     233333      36678999999999888777765

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.63  E-value=0.0025  Score=48.32  Aligned_cols=65  Identities=15%  Similarity=-0.001  Sum_probs=42.2

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ...|||+|||+.++++.|.+. ...-     +|..+.      .+..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus         5 ~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V   79 (95)
T 2dnz_A            5 SSGLYVGSLHFNITEDMLRGIFEPFG-----KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV   79 (95)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcC-----CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence            356899999999998876652 1111     233333      3567889999999977766664   4544 4556655


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        80 ~   80 (95)
T 2dnz_A           80 G   80 (95)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.63  E-value=0.0019  Score=50.04  Aligned_cols=66  Identities=15%  Similarity=-0.041  Sum_probs=42.4

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv~~  292 (337)
                      ...|||+|||+.++++.|.+.  +... +  |+.|.      ++..++||||+|.+.+.+..|+  ++.. .|.++.|..
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~--F~~~-g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~   89 (103)
T 2dng_A           15 PYTAYVGNLPFNTVQGDIDAI--FKDL-S--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI   89 (103)
T ss_dssp             CEEEEEESCCTTCCHHHHHHH--TTTS-C--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred             CeEEEEeCCCCCCCHHHHHHH--HHhC-C--ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence            456899999999998876551  1111 1  33333      3567889999999977766555  4544 444555543

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.62  E-value=0.0026  Score=51.39  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      ..|+|+|||+.++++.|.+- ..+. + .+..|.. ..+++++||||+|.+.+.+..|+  ++..|++
T Consensus        17 ~~v~V~nLp~~~te~dl~~~F~~~~-v-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~g   82 (109)
T 2dnn_A           17 LYVSVHGMPFSAMENDVRDFFHGLR-V-DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQ   82 (109)
T ss_dssp             HEEEEECCCSSCCHHHHHHHTTTSC-C-CEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETT
T ss_pred             CEEEEeCCCCCCCHHHHHHHhccCC-e-eEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECC
Confidence            35899999999999887662 1221 1 1111111 13678999999999976665554  5555554

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.61  E-value=0.0028  Score=48.83  Aligned_cols=70  Identities=16%  Similarity=0.074  Sum_probs=42.6

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ...|||+|||+.++++.|.+. ...-.+. +..+..  ..+..++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   84 (104)
T 1p1t_A            8 LRSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN   84 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred             ccEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence            356899999999998876652 1111010 111111  24567899999999977766665   3444 455555543

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=94.59  E-value=0.003  Score=49.40  Aligned_cols=66  Identities=17%  Similarity=0.030  Sum_probs=42.6

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ...-     +|..|.      .+..++||||+|.+.+.+..|+   ++..| |.++.
T Consensus        25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   99 (110)
T 1oo0_B           25 EGWILFVTSIHEEAQEDEIQEKFCDYG-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ   99 (110)
T ss_dssp             TBEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            3456999999999998876652 1111     233333      3566899999999977766554   45544 44554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       100 V~  101 (110)
T 1oo0_B          100 VD  101 (110)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=94.58  E-value=0.0051  Score=51.07  Aligned_cols=70  Identities=11%  Similarity=-0.147  Sum_probs=43.6

Q ss_pred             cccccCCcccccccccCCccc-hhh-hhhccCCceeEE---ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLD-DEE-IEAAEDDAALVK---HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealld-N~~-Leaie~Dpvl~~---qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||||||+.++++.|.+ ... +... | +|+.|   ..+.+++||||+|.+.+.+..|+   +|.. +|-++.|.
T Consensus        28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~-G-~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~  105 (127)
T 2a3j_A           28 PSQVVLITNINPEVPKEKLQALLYALASSQ-G-DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT  105 (127)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHH-S-CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhccC-C-CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence            345699999999998876543 111 1110 0 12223   34578999999999977766665   4444 56677665


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      -
T Consensus       106 ~  106 (127)
T 2a3j_A          106 F  106 (127)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=94.54  E-value=0.006  Score=46.92  Aligned_cols=64  Identities=13%  Similarity=-0.028  Sum_probs=42.4

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEecCC-cccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQ-SFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInq-sk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      .|||+|||+.++++.|.+. ...-     +|..+.+.. .++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   71 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFSYYG-----PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL   71 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHHHHC-----CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence            4789999999998876662 1111     344445444 5999999999977766664   4444 555665553

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=94.54  E-value=0.0023  Score=51.36  Aligned_cols=65  Identities=5%  Similarity=-0.137  Sum_probs=43.4

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ...|||+|||+.++++.|.+.- ..-     +|..|      .++.+++||||+|.+.+.+..|+   ++.. .|-++.|
T Consensus         6 ~~~lfV~nL~~~~te~~L~~~F~~~G-----~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V   80 (110)
T 3s8s_A            6 LKEVTFARLNDNVRETFLKDMCRKYG-----EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA   80 (110)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHhcC-----CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence            3568999999999988866621 110     12222      24788999999999977776664   4554 5556655


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        81 ~   81 (110)
T 3s8s_A           81 Q   81 (110)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.53  E-value=0.0025  Score=49.14  Aligned_cols=69  Identities=14%  Similarity=0.028  Sum_probs=43.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ..+-.+   -++....+..++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   87 (101)
T 2fc9_A           14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL   87 (101)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence            3456999999999998876652 111111   1111135678999999999977766664   4444 455665543

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.50  E-value=0.0029  Score=48.88  Aligned_cols=66  Identities=14%  Similarity=-0.119  Sum_probs=42.7

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ...|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v   89 (103)
T 2cq0_A           15 NATIRVTNLSEDTRETDLQELFRPFG-----SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV   89 (103)
T ss_dssp             SEEEEEESCCTTCCHHHHHTTSTTTC-----CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence            456899999999998876662 1111     222332      4567889999999977766665   4444 4555555


Q ss_pred             CC
Q 019677          291 PS  292 (337)
Q Consensus       291 ~~  292 (337)
                      ..
T Consensus        90 ~~   91 (103)
T 2cq0_A           90 EW   91 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=94.48  E-value=0.0026  Score=50.82  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=41.9

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh--hhhccC-CcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ..+-     +|..|      ..+..++||||+|.+.+.+..|+  ++..|+ .++.|.
T Consensus        36 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~  110 (124)
T 2jwn_A           36 KRSVYVGNVDYGSTAQDLEAHFSSCG-----SINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL  110 (124)
T ss_dssp             HTEEEEEEECTTCCHHHHHHHHHTTS-----CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence            356999999999998876662 1111     12222      24677999999999977665554  455544 444443

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=94.47  E-value=0.0031  Score=52.97  Aligned_cols=67  Identities=16%  Similarity=0.068  Sum_probs=44.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hh-ccCCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EA-MFGASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi-~fG~ptv  289 (337)
                      .....|||||||+.++++.|.+. ..+-     +|..|.      .+.+++||||+|.+.+.+..|+.  +. +.|.++.
T Consensus        11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~   85 (196)
T 1l3k_A           11 EQLRKLFIGGLSFETTDESLRSHFEQWG-----TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE   85 (196)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence            44567999999999999887662 1111     122222      35678999999999887777765  33 3455554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus        86 v~   87 (196)
T 1l3k_A           86 PK   87 (196)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.47  E-value=0.0063  Score=46.83  Aligned_cols=66  Identities=2%  Similarity=-0.072  Sum_probs=42.1

Q ss_pred             ccccCCcccccccccCCcc----chhhhhhccCCceeEEecCCc---ccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPL----DDEEIEAAEDDAALVKHIGQS---FRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEeall----dN~~Leaie~Dpvl~~qInqs---k~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ...|||||||+.++++.|.    +.  +...  -+|..|.|..+   ++||||+|.+.+.+..|+   ++.. .|-++.|
T Consensus         9 ~~~l~V~nL~~~~~~~~l~~~l~~~--F~~~--G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V   84 (96)
T 2dgx_A            9 GADVQVSNIDYRLSRKELQQLLQEA--FARH--GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV   84 (96)
T ss_dssp             CEEEEEESCCTTSCHHHHHHHHHHH--HHHH--SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHh--cccc--CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence            3468999999999998876    31  1110  13444554322   889999999977766664   4554 4555555


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        85 ~   85 (96)
T 2dgx_A           85 S   85 (96)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=94.46  E-value=0.0077  Score=48.52  Aligned_cols=60  Identities=15%  Similarity=-0.017  Sum_probs=40.2

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..+.      .+..++||||+|.+.+.+..|+   ++..|+
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~  131 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF  131 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence            4567999999999998876652 1111     233333      3567999999999977766665   455444

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.46  E-value=0.0041  Score=47.81  Aligned_cols=65  Identities=12%  Similarity=-0.021  Sum_probs=42.4

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ...|||+|||+.++++.|.+. ..+-     +|..+.     .+..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        17 ~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   91 (100)
T 2do4_A           17 KHKLFISGLPFSCTKEELEEICKAHG-----TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA   91 (100)
T ss_dssp             CSCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            456899999999998876652 1111     233333     3566799999999977766665   45554 4455443

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=94.43  E-value=0.0016  Score=48.84  Aligned_cols=56  Identities=14%  Similarity=0.086  Sum_probs=38.2

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D  280 (337)
                      .....|||+|||+.++++.|.+. ...-     +|..+.      ++.+++||||+|.+.+.+..|+.
T Consensus         9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~   71 (87)
T 3s7r_A            9 EDAGKMFVGGLSWDTSKKDLKDYFTKFG-----EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD   71 (87)
T ss_dssp             SCTTEEEEECCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence            34467999999999998876652 1111     122222      46778999999999777766664

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.43  E-value=0.0064  Score=46.65  Aligned_cols=67  Identities=7%  Similarity=-0.117  Sum_probs=43.0

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ....|||+|||+.++++.|.+. ...-.+.    +.+.++..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~----~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~   89 (97)
T 2e5j_A           18 LAADVYVGNLPRDARVSDLKRALRELGSVP----LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA   89 (97)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHTTCCC----SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred             CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE----EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            3457999999999998876652 1221121    12224688999999999977766554   45554 4455443

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=94.40  E-value=0.0027  Score=47.78  Aligned_cols=64  Identities=9%  Similarity=0.065  Sum_probs=41.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~  291 (337)
                      ..|||||||+.++++.+.+. ...-     +|..+.      .+.+++||||+|.+.+ +..|+.   +.. .|.++.|.
T Consensus         2 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~   75 (90)
T 2ki2_A            2 RNIYVGNLVYSATSEQVKELFSQFG-----KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVT   75 (90)
T ss_dssp             EEEEEEEECTTSSHHHHTTTHHHHT-----CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEE
T ss_pred             cEEEECCCCCCCCHHHHHHHHHhcC-----CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEE
Confidence            35899999999999887762 1111     122222      4677999999999977 666653   444 45565554


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      .
T Consensus        76 ~   76 (90)
T 2ki2_A           76 E   76 (90)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=94.40  E-value=0.0025  Score=47.02  Aligned_cols=63  Identities=11%  Similarity=0.090  Sum_probs=40.4

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP  291 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~  291 (337)
                      .|||+|||+.++++.|.+. ...-     ++..+.      .+..++||||+|.+.+.+..|+   ++..++ .++.|.
T Consensus         3 ~l~V~nlp~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~   76 (83)
T 3md1_A            3 NLFVGDLNVNVDDETLRNAFKDFP-----SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN   76 (83)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTST-----TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence            4789999999998876652 1111     222222      4567999999999977766554   455544 454443

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=94.35  E-value=0.0066  Score=48.23  Aligned_cols=67  Identities=9%  Similarity=-0.093  Sum_probs=42.6

Q ss_pred             ccccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      .......|||||||+.++++.|.+. ...-     +|..|.+.  ++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   98 (108)
T 2jvo_A           27 GELSNTRLFVRPFPLDVQESELNEIFGPFG-----PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV   98 (108)
T ss_dssp             -CCSCSEEEECSSCTTCCHHHHHHHHTTTS-----CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence            3345567999999999998876551 1111     23344443  899999999977766554   45554 4455444

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=94.33  E-value=0.003  Score=47.88  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=42.7

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHh---hhhc-cCCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptv  289 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..+.|     +..++||||+|.+.+.+..|+   ++.. .|.++.
T Consensus        14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (95)
T 2ywk_A           14 EADRTVFVGNLEARVREEILYELFLQAG-----PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN   88 (95)
T ss_dssp             TGGGEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence            34567999999999998876652 1111     2333333     456889999999977766554   4444 444554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus        89 V~   90 (95)
T 2ywk_A           89 VS   90 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=94.32  E-value=0.0035  Score=46.46  Aligned_cols=62  Identities=15%  Similarity=-0.011  Sum_probs=40.9

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      .....|||+|||+.++++.|.+. ...-     ++..+.      .+..++||||+|.+.+.+..|+   ++..|++
T Consensus         5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g   76 (85)
T 3mdf_A            5 TTKRVLYVGGLAEEVDDKVLHAAFIPFG-----DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG   76 (85)
T ss_dssp             CCSSEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHhccC-----CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            34567899999999998876552 1111     233333      4567899999999977766554   4555443

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.31  E-value=0.0051  Score=48.91  Aligned_cols=59  Identities=10%  Similarity=-0.002  Sum_probs=38.9

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe--c---CCcccchhhhhhhHhhHHHHhhh
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH--I---GQSFRFSAIEARREEQIKAAHDE  281 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q--I---nqsk~fA~vEFKseetvalA~Dg  281 (337)
                      ....|||||||+.++++.|.+. ...-.+.  .++...  .   +.+++||||+|.+.+.+..|+..
T Consensus         7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~   71 (114)
T 2dnl_A            7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA   71 (114)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh
Confidence            4467999999999999886662 1111111  111111  2   47899999999998888777753

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=94.30  E-value=0.0044  Score=48.79  Aligned_cols=66  Identities=9%  Similarity=-0.065  Sum_probs=42.7

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++..| |.++.
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~   88 (115)
T 2dgo_A           14 NHFHVFVGDLSPEITTEDIKAAFAPFG-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR   88 (115)
T ss_dssp             TCEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence            3456999999999998876662 1111     133333      4556889999999977766665   45554 44554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus        89 V~   90 (115)
T 2dgo_A           89 TN   90 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=94.29  E-value=0.0028  Score=47.13  Aligned_cols=59  Identities=12%  Similarity=-0.047  Sum_probs=38.9

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG  285 (337)
                      ...|||+|||+.++++.|.+. ...-     +|..+.      .+..++||||+|.+.+.+..|+.   +..|+
T Consensus         6 ~~~l~v~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~   74 (87)
T 3bs9_A            6 HFHVFVGDLSPEITTAAIAAAFAPFG-----RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG   74 (87)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHHhcC-----CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            456899999999998876652 1111     122222      45678999999999777666654   44444

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.28  E-value=0.0078  Score=47.55  Aligned_cols=70  Identities=10%  Similarity=0.038  Sum_probs=41.5

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ....|||||||+.++++.|.+. ...-.+ .+..+..+.+..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~  102 (109)
T 2err_A           28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN  102 (109)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            3456899999999998876552 111100 011122223457899999999976665554   45544 4454443

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=94.26  E-value=0.0036  Score=52.98  Aligned_cols=67  Identities=16%  Similarity=0.022  Sum_probs=43.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASA  288 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~pt  288 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.      ++..++||||+|.+.+.+..|+   ++.. .|.++
T Consensus        70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l  144 (165)
T 1rk8_A           70 VEGWILFVTSIHEEAQEDEIQEKFCDYG-----EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI  144 (165)
T ss_dssp             C-CEEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHhhcCC-----CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            34456999999999998876652 1111     233333      4456899999999977666554   4554 45555


Q ss_pred             cCC
Q 019677          289 VPP  291 (337)
Q Consensus       289 vv~  291 (337)
                      .|.
T Consensus       145 ~V~  147 (165)
T 1rk8_A          145 QVD  147 (165)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=94.25  E-value=0.0089  Score=46.35  Aligned_cols=66  Identities=6%  Similarity=-0.184  Sum_probs=43.6

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSV  293 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t  293 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.+.  ++||||+|.+.+.+..|+   ++.. .|.++.|...
T Consensus        10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-----~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a   80 (103)
T 2dgu_A           10 KVKVLFVRNLANTVTEEILEKAFSQFG-----KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA   80 (103)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHHS-----CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence            3467999999999998876662 1221     34455554  569999999977766654   4444 5556655543

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=94.21  E-value=0.008  Score=45.67  Aligned_cols=69  Identities=7%  Similarity=-0.158  Sum_probs=43.4

Q ss_pred             cccccCCcccccccccCCccc-h-hhhhhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLD-D-EEIEAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealld-N-~~Leaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||+|||+.++++.+.. . .-+...  -+|..+.+   +..++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~   84 (97)
T 1nu4_A            7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ   84 (97)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            345689999999999887662 0 011111  13444444   467899999999977766664   4544 45555554

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=94.13  E-value=0.0047  Score=47.92  Aligned_cols=66  Identities=9%  Similarity=-0.019  Sum_probs=42.0

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv  289 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..+.     .+..++||||+|.+.+.+..|+   ++..|+ .++.
T Consensus        27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  101 (107)
T 3ulh_A           27 ETGGKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN  101 (107)
T ss_dssp             CCSEEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            44567999999999998876552 1111     222332     4467899999999977765554   455544 3443


Q ss_pred             C
Q 019677          290 P  290 (337)
Q Consensus       290 v  290 (337)
                      |
T Consensus       102 V  102 (107)
T 3ulh_A          102 I  102 (107)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=94.11  E-value=0.0064  Score=46.70  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             cccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCCCC
Q 019677          221 KDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPSVS  294 (337)
Q Consensus       221 adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~t~  294 (337)
                      ....|||||||+ .++++.|.+. ...     -+|..+.+  .++||||+|.+.+.+..|+.   +.. .|.++.|....
T Consensus         9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~-----G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~   81 (96)
T 2kvi_A            9 PKSRLFIGNLPLKNVSKEDLFRIFSPY-----GHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS   81 (96)
T ss_dssp             CCEEEEEESSTTSCCCHHHHHHHHTTT-----CCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhc-----CCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence            345699999999 9988876552 111     13444445  38999999999777666653   444 57777665443

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=94.07  E-value=0.0038  Score=50.81  Aligned_cols=65  Identities=8%  Similarity=-0.082  Sum_probs=42.6

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        43 ~~l~V~nLp~~~~~~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~  117 (139)
T 1u6f_A           43 RNLMVNYIPTTVDEVQLRQLFERYG-----PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA  117 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHS-----CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence            56999999999998876662 1111     122232      3567899999999977766665   4544 45555554


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      .
T Consensus       118 ~  118 (139)
T 1u6f_A          118 L  118 (139)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=94.05  E-value=0.0055  Score=50.64  Aligned_cols=66  Identities=12%  Similarity=-0.037  Sum_probs=43.3

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv  290 (337)
                      ...|||+|||+.++++.|.+. ..+-     +|..+.      .+..++||||+|.+.+.+..|+.   +.. .|.++.|
T Consensus        47 ~~~l~V~nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V  121 (135)
T 2lea_A           47 MTSLKVDNLTYRTSPDTLRRVFEKYG-----RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV  121 (135)
T ss_dssp             CCCEEEECCCSSCHHHHHHHHHGGGS-----CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            456999999999998886662 1111     122222      45778999999999777776653   444 4555555


Q ss_pred             CC
Q 019677          291 PS  292 (337)
Q Consensus       291 ~~  292 (337)
                      ..
T Consensus       122 ~~  123 (135)
T 2lea_A          122 QM  123 (135)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.05  E-value=0.0065  Score=45.69  Aligned_cols=55  Identities=7%  Similarity=-0.037  Sum_probs=38.1

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHhh
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~D  280 (337)
                      ....|||||||+.++++.|.+. ...     -+|..|.|- ..++||||+|.+.+.+..++.
T Consensus         4 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~   60 (88)
T 1wf0_A            4 GSSGVFVGRCTGDMTEDELREFFSQY-----GDVMDVFIPKPFRAFAFVTFADDQIAQSLCG   60 (88)
T ss_dssp             CCCEEEEESCCSSSCHHHHHHHSTTT-----SCCCEEECCSSCCSCCEEECSCHHHHHHTTT
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHc-----CCeeEEEEecCCCCEEEEEECCHHHHHHHhc
Confidence            3467999999999998876552 111     134555543 468999999999877765544

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.03  E-value=0.0032  Score=49.82  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=43.0

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPPSV  293 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~~t  293 (337)
                      ..|||+|||+.++++.|.+.- .+-.+ .+..|..  .++..++||||+|.+.+.+..|+.  +.. .|.++.|...
T Consensus        28 ~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a  103 (116)
T 1x4b_A           28 RKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA  103 (116)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence            568999999999988766521 11000 0111111  246678999999999877777764  333 4555555443

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=93.99  E-value=0.0036  Score=48.77  Aligned_cols=61  Identities=13%  Similarity=0.005  Sum_probs=38.4

Q ss_pred             ccccCCccccc------ccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          222 DETKGSGWERF------EFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       222 dr~L~VGnipf------~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      +..|+|+|||+      .++++.|.+.  +... + +|..|.      ++++++||||+|.+.+.+..|+   ++..|++
T Consensus         6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~--F~~~-G-~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g   81 (100)
T 3ns6_A            6 DQYIVVNGAPVIPSAKVPVLKKALTSL--FSKA-G-KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL   81 (100)
T ss_dssp             GGEEEEESCCCCBGGGHHHHHHHHHHH--HHTT-S-CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred             CcEEEEeCCCcCChHHHHHHHHHHHHH--HHhc-C-CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence            45689999999      6666654441  1110 1 233333      3678999999999977666554   5665554

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=93.99  E-value=0.012  Score=45.57  Aligned_cols=66  Identities=12%  Similarity=0.098  Sum_probs=44.0

Q ss_pred             cccccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          219 ANKDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       219 A~adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ......|||||||+ .++++.|.+. ...     -.|..+.+  .++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~-----G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   90 (97)
T 2xnq_A           19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY-----GHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE   90 (97)
T ss_dssp             CCTTCEEEEESCCSSCCCHHHHHHHHGGG-----SCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred             CCCCCEEEEeCCCcccCCHHHHHHHHHhc-----CCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            34456799999998 9998876552 111     13555555  4899999999977766665   45554 5555543

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.93  E-value=0.011  Score=46.64  Aligned_cols=67  Identities=9%  Similarity=-0.090  Sum_probs=42.0

Q ss_pred             cccccCCcccccccccCCcc---ch-hhhhhccCCceeEEecC---------CcccchhhhhhhHhhHHHHh---hhhc-
Q 019677          221 KDETKGSGWERFEFDKDAPL---DD-EEIEAAEDDAALVKHIG---------QSFRFSAIEARREEQIKAAH---DEAM-  283 (337)
Q Consensus       221 adr~L~VGnipf~~tEeall---dN-~~Leaie~Dpvl~~qIn---------qsk~fA~vEFKseetvalA~---Dgi~-  283 (337)
                      ....|||+|||+.++++.|.   +. ...-     +|..|.|.         ..++||||+|.+.+.+..|+   ++.. 
T Consensus        14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G-----~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~   88 (111)
T 2cpi_A           14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFG-----KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV   88 (111)
T ss_dssp             CSSCEEEEEECTTTCCHHHHHSTTTTTTTS-----CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHhhccC-----CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence            34568999999999999876   41 1111     23333322         34579999999977766665   4444 


Q ss_pred             cCCcccCCC
Q 019677          284 FGASAVPPS  292 (337)
Q Consensus       284 fG~ptvv~~  292 (337)
                      .|-++.|..
T Consensus        89 ~gr~l~V~~   97 (111)
T 2cpi_A           89 DGRTLKASL   97 (111)
T ss_dssp             TTEEEEEES
T ss_pred             CCEEEEEEe
Confidence            455555543

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.90  E-value=0.0063  Score=47.71  Aligned_cols=66  Identities=8%  Similarity=-0.042  Sum_probs=42.5

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.     .+..++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus        14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   88 (114)
T 2do0_A           14 LGSTVFVANLDYKVGWKKLKEVFSMAG-----VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV   88 (114)
T ss_dssp             CCSCEEEESCCTTCCHHHHHHHHTTTS-----CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence            3467999999999998876652 1111     233333     2456889999999977766554   4544 4555555


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        89 ~   89 (114)
T 2do0_A           89 K   89 (114)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=93.90  E-value=0.0045  Score=47.10  Aligned_cols=67  Identities=18%  Similarity=0.075  Sum_probs=43.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~  291 (337)
                      ....|||+|||+.++++.|.+. ..+..+  . ++ ...+..++||||+|.+.+.+..|+.   +.. .|.++.|.
T Consensus        15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v--~-~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   86 (96)
T 1fjc_A           15 AARTLLAKNLSFNITEDELKEVFEDALEI--R-LV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY   86 (96)
T ss_dssp             GGGEEEEESCCSSCCHHHHHHHHCSEEEE--C-CE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHhhCCcE--E-Ee-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence            3456899999999998876652 111100  0 11 4567889999999999777776654   444 45555544

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=93.82  E-value=0.0071  Score=50.83  Aligned_cols=67  Identities=9%  Similarity=0.038  Sum_probs=42.1

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhc--cCCceeEEe-cCCcccchhhhhhhHhhHHHHhh--hhccC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAA--EDDAALVKH-IGQSFRFSAIEARREEQIKAAHD--EAMFG  285 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leai--e~Dpvl~~q-Inqsk~fA~vEFKseetvalA~D--gi~fG  285 (337)
                      ......|+|+|||+.++++.|.+- ..+-.+  -.+..|..+ .+++++||||+|.+.+.+..|+.  +..|+
T Consensus        41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~  113 (136)
T 2hgl_A           41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMG  113 (136)
T ss_dssp             CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence            344566899999999999887661 111110  011222221 36789999999999877766654  44444

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=93.82  E-value=0.0082  Score=47.08  Aligned_cols=63  Identities=10%  Similarity=-0.044  Sum_probs=41.9

Q ss_pred             cccCCcccccc-cccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          223 ETKGSGWERFE-FDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~-~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ..|||+|||+. ++++.|.+. ...-     +|..|.+  .++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        28 ~~l~V~nl~~~~~t~~~l~~~F~~~G-----~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~   96 (110)
T 1wf1_A           28 SRVFIGNLNTALVKKSDVETIFSKYG-----RVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM   96 (110)
T ss_dssp             SEEEECSCCCSSCCHHHHHHHHGGGS-----CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred             cEEEEeCCCcccCCHHHHHHHHHhCC-----CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence            56999999999 888776552 1111     3444555  7899999999976665554   5555 455555543

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=93.81  E-value=0.0098  Score=44.11  Aligned_cols=64  Identities=11%  Similarity=0.079  Sum_probs=41.0

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEec------CC-cccchhhhhhhHhhHHHHh---hhhccC-CcccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------GQ-SFRFSAIEARREEQIKAAH---DEAMFG-ASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------nq-sk~fA~vEFKseetvalA~---Dgi~fG-~ptvv  290 (337)
                      ..|||+|||+.++++.|.+. ...     -+|..+.+      +. .++||||+|.+.+.+..|+   ++..|+ .++.|
T Consensus         5 ~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v   79 (88)
T 4a8x_A            5 TKVHIGRLTRNVTKDHIMEIFSTY-----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA   79 (88)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHTT-----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhC-----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence            46899999999998876652 111     13334443      22 7899999999977765554   555544 44444


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        80 ~   80 (88)
T 4a8x_A           80 T   80 (88)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.76  E-value=0.0057  Score=46.19  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv  290 (337)
                      ....|+|+|||+.++++.|.+. ... .+. +..|.. ..++.++||||+|.+.+.+..|+  ++..|+ -++.|
T Consensus         9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v   81 (91)
T 2dgw_A            9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV   81 (91)
T ss_dssp             CCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEE
T ss_pred             CccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEE
Confidence            3456899999999998876651 112 111 111111 24567899999999977766665  455544 34444

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=93.75  E-value=0.0046  Score=50.55  Aligned_cols=65  Identities=11%  Similarity=0.057  Sum_probs=43.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhhh--hccCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHDE--AMFGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv~  291 (337)
                      ...|||||||+.++++.|.+. ..+-     +|..+.      .+.+++||||+|.+.+.+..|+..  .+.|.++.|.
T Consensus         3 ~~~l~v~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~   76 (167)
T 2cjk_A            3 SCKMFIGGLNWDTTEDNLREYFGKYG-----TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPK   76 (167)
T ss_dssp             GGEEEECSCCTTCCHHHHHHHHTTTC-----CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccc
Confidence            356899999999999886662 1110     233333      467789999999998888777762  2344444443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=93.73  E-value=0.011  Score=53.17  Aligned_cols=66  Identities=11%  Similarity=-0.043  Sum_probs=45.9

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||||||+.++++.|.+. ..+     -+|..|.+..+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        21 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~   91 (261)
T 3sde_A           21 QRCRLFVGNLPTDITEEDFKRLFERY-----GEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR   91 (261)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHTGGG-----CCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhc-----CCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence            3356999999999998876652 111     13566777889999999999977766554   4555 44455444

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=93.73  E-value=0.0054  Score=49.67  Aligned_cols=64  Identities=8%  Similarity=-0.060  Sum_probs=41.7

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEec-----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      +.|||+|||+.++++.|.+. ...    + +|..+.+     +.+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         1 R~l~V~nlp~~~t~~~l~~~f~~~----G-~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~   74 (166)
T 3md3_A            1 RVLYVGNLDKAITEDILKQYFQVG----G-PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKIN   74 (166)
T ss_dssp             CEEEEEEEETTCCHHHHHHHHGGG----S-CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CEEEECCCCCcCCHHHHHHHHHhc----C-CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEE
Confidence            35899999999998876662 111    1 2333333     567899999999977776665   4554 44555444

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.71  E-value=0.014  Score=44.77  Aligned_cols=68  Identities=6%  Similarity=-0.085  Sum_probs=42.6

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+.  +.....-.|..+.+  .++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~--F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~   85 (99)
T 2cpd_A           14 SVKILYVRNLMLSTSEEMIEKE--FNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL   85 (99)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHH--HHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             CcCEEEEeCCCCCCCHHHHHHH--HHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence            4467999999999998876652  11110023444444  4779999999977766554   4544 455555543

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=93.70  E-value=0.0082  Score=46.06  Aligned_cols=56  Identities=5%  Similarity=-0.059  Sum_probs=37.0

Q ss_pred             ccccccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHH
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAA  278 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA  278 (337)
                      .......|||||||+.++++.|.+. ...     -+|..|.|- .+++||||+|.+.+.+..+
T Consensus         7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~-----G~i~~v~i~~~srGfaFV~F~~~~~A~~~   64 (89)
T 3d2w_A            7 HHHHGSKVFVGRCTEDMTAEELQQFFCQY-----GEVVDVFIPKPFRAFAFVTFADDKVAQSL   64 (89)
T ss_dssp             ----CCEEEEESCCTTCCHHHHHHHHTTT-----SCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCCCHHHHHHHHhcc-----CCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence            3445567999999999999876552 111     135555543 4799999999997776633

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.55  E-value=0.0066  Score=47.71  Aligned_cols=57  Identities=9%  Similarity=0.006  Sum_probs=38.1

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh---hhcc
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD---EAMF  284 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D---gi~f  284 (337)
                      ..|||+|||+.++++.|.+. ...-     +|..+.     .+..++||||+|.+.+.+..|+.   +..+
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~   91 (114)
T 1x5o_A           26 TNLYISNLPLSMDEQELENMLKPFG-----QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI   91 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHTTTTTS-----CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcC-----CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence            46899999999998876552 1111     122332     35678999999999777666654   5544

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=93.55  E-value=0.0038  Score=49.37  Aligned_cols=59  Identities=10%  Similarity=-0.041  Sum_probs=39.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~fG  285 (337)
                      ...|||+|||+.++++.|.+. ..+     -+|..+.      .+..++||||+|.+.+....|+.   +..|+
T Consensus        40 ~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~  108 (118)
T 2khc_A           40 GCNLFIYHLPQEFTDTDLASTFLPF-----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG  108 (118)
T ss_dssp             SEEEEEECSCTTCCHHHHHHHTTTS-----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence            356899999999998876652 111     0233333      35678999999999777666654   54444

>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}

Probab=93.49  E-value=0.037  Score=35.77  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=18.3

Q ss_pred             CCcccccCCCCCCChHHHHHH
Q 019677          189 VDYSRLIEGYDHMTPAAIVKA  209 (337)
Q Consensus       189 ~d~~~~i~GfE~~TPAEkvka  209 (337)
                      ..|+..++||||+||++++.+
T Consensus         6 ~~WDvpP~GyE~vtp~qykam   26 (28)
T 1jmt_B            6 KYWDVPPPGFEHITPMQYKAM   26 (28)
T ss_dssp             CCBTCCCTTCTTSCHHHHHHT
T ss_pred             cccCCCCCCccccCHHHHhhc
Confidence            379999999999999997754

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.34  E-value=0.013  Score=44.25  Aligned_cols=68  Identities=6%  Similarity=-0.159  Sum_probs=42.2

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hh-hc-cCCcccCCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DE-AM-FGASAVPPSV  293 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dg-i~-fG~ptvv~~t  293 (337)
                      ....|||+|||+.++++.|.+. ...-    ..+..+.+ ..++||||+|.+.+.+..|+   ++ .. .|.++.|...
T Consensus         7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G----~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a   80 (93)
T 2cqh_A            7 GMNKLYIGNLSPAVTADDLRQLFGDRK----LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS   80 (93)
T ss_dssp             CCCCEEEECCCTTCCHHHHHHHHHHTT----CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence            3467999999999998876652 1111    11111112 46899999999977665554   45 44 5556655533

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.33  E-value=0.019  Score=43.25  Aligned_cols=65  Identities=11%  Similarity=-0.060  Sum_probs=42.4

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ....|||+|||+.++++.|.+. ...-     +|..+.+.  ++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~   77 (90)
T 2dnp_A            8 NTWKIFVGNVSAACTSQELRSLFERRG-----RVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL   77 (90)
T ss_dssp             CSCCEEEESCCTTCCHHHHHHHHHHHS-----CEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHcCC-----CEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence            4466899999999998876652 1221     25555554  449999999977766554   4554 445555543

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=93.32  E-value=0.0061  Score=53.18  Aligned_cols=53  Identities=9%  Similarity=0.065  Sum_probs=38.1

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D  280 (337)
                      ..|||||||+.++++.|.+. ...-     +|+.|.      ++.+++||||+|.+.+.+..|+.
T Consensus        16 ~tlfVgnLp~~~te~~L~~~F~~~G-----~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~   75 (213)
T 4f02_A           16 ASLYVGDLHPDVTEAMLYEKFSPAG-----PILSIRVCRDMITRRSLGYAYVNFQQPADAERALD   75 (213)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhhC-----CEEEEEEecccCCCCccccccceeCCHHHHHHHHH
Confidence            46999999999999887662 1111     233332      46788999999999888777754

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=93.26  E-value=0.013  Score=45.85  Aligned_cols=66  Identities=8%  Similarity=-0.139  Sum_probs=39.4

Q ss_pred             ccccCCccccccccc------CCccchhhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHh---hhhccCC--
Q 019677          222 DETKGSGWERFEFDK------DAPLDDEEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAH---DEAMFGA--  286 (337)
Q Consensus       222 dr~L~VGnipf~~tE------ealldN~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~---Dgi~fG~--  286 (337)
                      ...|||||||+.+++      +.|.+.  +...  -+|..|.    .+.+++||||+|.+.+.+..|+   ++..|++  
T Consensus        15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~--F~~~--G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~   90 (105)
T 2nlw_A           15 DSVIVVDNVPQVGPDRLEKLKNVIHKI--FSKF--GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH   90 (105)
T ss_dssp             CSEEEEESCCCCCTTTTTHHHHHHHHH--HGGG--SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred             CCEEEEeCCCcchhhhhHHHHHHHHHH--HhcC--CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence            456999999997743      322221  1110  1233333    4578899999999976665554   4555554  


Q ss_pred             cccCC
Q 019677          287 SAVPP  291 (337)
Q Consensus       287 ptvv~  291 (337)
                      ++.|.
T Consensus        91 ~l~V~   95 (105)
T 2nlw_A           91 TFRVN   95 (105)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55554

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.25  E-value=0.035  Score=42.20  Aligned_cols=67  Identities=7%  Similarity=-0.156  Sum_probs=40.1

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHhh--hhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAHD--EAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~~  292 (337)
                      ....|||||||+.++++.|.+. ...-     +|..|-+. .+..||||+|.+.+.+..|+.  +.. .|.++.|..
T Consensus         7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G-----~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~   78 (94)
T 2e5g_A            7 GLRSVFVSGFPRGVDSAQLSEYFLAFG-----PVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRP   78 (94)
T ss_dssp             TCCEEEEECCCTTCCHHHHHHHGGGTS-----CEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhcC-----CeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEE
Confidence            3457999999999998876652 1111     11122221 122299999999777666654  444 445666653

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=93.12  E-value=0.0068  Score=49.44  Aligned_cols=65  Identities=8%  Similarity=0.023  Sum_probs=42.5

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      ...|+|+|||+.++++.|.+. ...-     +|..+.      .+.+++||||+|.+.+.+..|+   ++..+ |.++.|
T Consensus         3 ~~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v   77 (168)
T 1b7f_A            3 NTNLIVNYLPQDMTDRELYALFRAIG-----PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV   77 (168)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             ccEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence            356899999999998886662 1111     233333      4456789999999977776665   45554 445544


Q ss_pred             C
Q 019677          291 P  291 (337)
Q Consensus       291 ~  291 (337)
                      .
T Consensus        78 ~   78 (168)
T 1b7f_A           78 S   78 (168)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=93.03  E-value=0.0052  Score=47.39  Aligned_cols=56  Identities=9%  Similarity=-0.025  Sum_probs=38.7

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D  280 (337)
                      .....|||||||+.++++.|.+. ...-     +|..|.     .+..++||||+|.+.+.+..|+.
T Consensus         7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~   68 (102)
T 2xs2_A            7 IMPNTVFVGGIDVRMDETEIRSFFARYG-----SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE   68 (102)
T ss_dssp             EEEEEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhCC-----CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence            34467999999999998876652 1111     222333     35678999999999777777765

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=92.91  E-value=0.0098  Score=47.62  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=42.8

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      .....|||+|||+.++++.|.+. ..+-     +|..|.     .+..++||||+|.+.+.+..|+   ++..| |.++.
T Consensus        33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~  107 (124)
T 2kt5_A           33 ETGAKLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD  107 (124)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHHHTTS-----CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence            34457999999999998876652 1111     122222     3567899999999977766654   45554 44554


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       108 V~  109 (124)
T 2kt5_A          108 IQ  109 (124)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.56  E-value=0.03  Score=46.17  Aligned_cols=55  Identities=15%  Similarity=-0.015  Sum_probs=38.4

Q ss_pred             cccccCC--cccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          221 KDETKGS--GWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       221 adr~L~V--Gnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ....|||  ||+++.++++.|.+. ...    | .|..+.|...++||||+|.+.+....|++
T Consensus        24 pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G-~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~   81 (114)
T 2cq2_A           24 ATQSLVVANGGLGNGVSRNQLLPVLEKC----G-LVDALLMPPNKPYSFARYRTTEESKRAYV   81 (114)
T ss_dssp             CCSEEEEETCTGGGTCCHHHHHHHHHHH----S-CEEEEECCTTCSCEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            3456999  889999999876652 111    1 34555666679999999999776665543

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=92.40  E-value=0.021  Score=46.13  Aligned_cols=64  Identities=8%  Similarity=-0.015  Sum_probs=41.7

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|+|+|||+.++++.|.+. ...-     ++..+.      .+.+++||||+|.+.+.+..|+   ++..+ |.++.|.
T Consensus         3 ~~l~v~nlp~~~~~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~   77 (167)
T 1fxl_A            3 TNLIVNYLPQNMTQEEFRSLFGSIG-----EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVS   77 (167)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             ceEEEcCCCCCCCHHHHHHHHHhcC-----CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEE
Confidence            46899999999998886662 1111     233332      4556799999999977776665   45544 4455444

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=92.37  E-value=0.014  Score=49.71  Aligned_cols=66  Identities=14%  Similarity=0.013  Sum_probs=42.8

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh---hhc-cCCccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD---EAM-FGASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D---gi~-fG~ptv  289 (337)
                      ....|||+|||+.++++.|.+. ..+-     +|..|.      .+..++||||+|.+.+.+..|+.   +.. .|.++.
T Consensus        27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G-----~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~  101 (216)
T 2qfj_A           27 IMSRVYVGSIYYELGEDTIRQAFAPFG-----PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIK  101 (216)
T ss_dssp             HHTEEEEECCCTTCCHHHHHHHHGGGS-----CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCE
T ss_pred             cCCEEEEECCCCCCCHHHHHHHHHhCC-----CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEE
Confidence            3456999999999998887662 1111     233333      45689999999999777766654   544 455665


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       102 v~  103 (216)
T 2qfj_A          102 VG  103 (216)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.90  E-value=0.022  Score=43.08  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=41.9

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      .....|||+|||+.++++.|.+. ...    + +|..|.+.  ++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~   78 (92)
T 2dgt_A            8 KASTKLHVGNISPTCTNQELRAKFEEY----G-PVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL   78 (92)
T ss_dssp             CSSEEEEEESCCSSCCHHHHHHHHHTT----S-CCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence            34456899999999988876552 111    1 34445554  449999999976665554   4544 455555543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=91.88  E-value=0.077  Score=46.62  Aligned_cols=66  Identities=6%  Similarity=-0.155  Sum_probs=44.5

Q ss_pred             cccccCCccccc-ccccCCccch-hhhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERF-EFDKDAPLDD-EEIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf-~~tEealldN-~~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ....|||+|||+ .++++.|.+. ...    + +|..|.+-.+ ++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        33 ~~~~l~V~nLp~~~~te~~L~~~F~~~----G-~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~  105 (229)
T 2adc_A           33 GNSVLLVSNLNPERVTPQSLFILFGVY----G-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT  105 (229)
T ss_dssp             CCSEEEEESCCTTTCCHHHHHHHHHHH----T-CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred             CCCEEEEeCCCcccCCHHHHHHHHHhC----C-CeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence            345699999999 8998876652 111    1 2555665443 699999999977776665   3444 56666554

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=91.80  E-value=0.029  Score=50.29  Aligned_cols=72  Identities=8%  Similarity=-0.149  Sum_probs=44.8

Q ss_pred             ccccccCCcccccccccCCccc-h-hhhhhc-cCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLD-D-EEIEAA-EDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealld-N-~~Leai-e~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      .....|||+|||+.++++.|.. . +-+... +...|..+..+..++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~   85 (282)
T 3pgw_A            7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ   85 (282)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence            4456799999999999887432 0 011110 1111222236678999999999977776665   3444 56666554

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.38  E-value=0.041  Score=44.72  Aligned_cols=66  Identities=9%  Similarity=-0.034  Sum_probs=42.0

Q ss_pred             cCCcccccccccCCccc-hhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hhccCCcccCCCCC
Q 019677          225 KGSGWERFEFDKDAPLD-DEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EAMFGASAVPPSVS  294 (337)
Q Consensus       225 L~VGnipf~~tEealld-N~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi~fG~ptvv~~t~  294 (337)
                      |||+|||+.++++.|-. ...+=..=+=.|+.+    +.+||||+|.+.+....|+.    .-+||-|+.|+-..
T Consensus        12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~   82 (96)
T 2diu_A           12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP   82 (96)
T ss_dssp             EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence            89999999999876443 111100001124333    34999999999888777754    34488888776433

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.22  E-value=0.026  Score=52.12  Aligned_cols=56  Identities=9%  Similarity=-0.116  Sum_probs=36.9

Q ss_pred             ccccccCCcccccccc---------cCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh
Q 019677          220 NKDETKGSGWERFEFD---------KDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH  279 (337)
Q Consensus       220 ~adr~L~VGnipf~~t---------EealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~  279 (337)
                      .....||||||++.++         ++.|.+.  +.  +==+|..+.|-.+++||||+|.+.+.+..|+
T Consensus       132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~--F~--~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~  196 (240)
T 3u1l_A          132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFV--FS--RLGDIDRIRYVESKNCGFVKFKYQANAEFAK  196 (240)
T ss_dssp             CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHH--HH--TTSCEEEEEEEGGGTEEEEEESSHHHHHHHH
T ss_pred             cCCceeecCCCChhhhcccccccCcHHHHHHH--HH--ccCCEEEEEEECCCCEEEEEeCCHHHHHHHH
Confidence            3456799999999874         3322221  11  1124566666678999999999977766664

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=91.10  E-value=0.022  Score=46.59  Aligned_cols=53  Identities=11%  Similarity=-0.029  Sum_probs=36.7

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEec------C--CcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI------G--QSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI------n--qsk~fA~vEFKseetvalA~D  280 (337)
                      ..|||+|||+.++++.|.+. ...-     +|..+.+      +  .+++||||+|.+.+.+..|+.
T Consensus         4 ~~l~V~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~   65 (175)
T 3nmr_A            4 IKMFVGQVPRTWSEKDLRELFEQYG-----AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN   65 (175)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHH
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhCC-----CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHH
Confidence            46899999999999886662 1111     2333332      2  688999999999887776654

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=90.89  E-value=0.015  Score=47.37  Aligned_cols=63  Identities=10%  Similarity=-0.078  Sum_probs=40.1

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh--hhccC-CcccC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD--EAMFG-ASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D--gi~fG-~ptvv  290 (337)
                      ..|+|+|+|+.++++.|.+.- ..-     +|..+      ..+.+++||||+|.+.+.+..|+.  +..|+ .++.|
T Consensus        88 ~~l~V~nlp~~~t~~~l~~~F~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V  160 (167)
T 2cjk_A           88 GKIFVGGIGPDVRPKEFEEFFSQWG-----TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEI  160 (167)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHTTS-----CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEE
T ss_pred             CeEEECCCCCCCCHHHHHHHHHhCc-----cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEE
Confidence            358999999999888766521 110     12222      246778999999999777766654  44443 34433

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=90.88  E-value=0.031  Score=48.63  Aligned_cols=68  Identities=10%  Similarity=-0.015  Sum_probs=42.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|+|+|||+.++++.|.+. ...-.+ .+..|..+.+..++||||+|.+.+.+..|+   ++..+ |.++.|.
T Consensus       104 ~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~  176 (213)
T 4f02_A          104 GNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG  176 (213)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             ccceECCcccccHHHHHHHHHhhcCCe-EEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            35899999999998876662 111100 011222334567899999999977776665   45554 4566554

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=89.87  E-value=0.069  Score=51.79  Aligned_cols=59  Identities=10%  Similarity=-0.084  Sum_probs=40.5

Q ss_pred             cccccccccCCcc--cccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          217 ETANKDETKGSGW--ERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       217 ~tA~adr~L~VGn--ipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      -.......|||||  ++++++++.|.+.- ..    | .|..+.+..+++||||+|.+.+....|++
T Consensus        13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G-~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~   74 (345)
T 3tht_A           13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKC----G-LVDALLMPPNKPYSFARYRTTEESKRAYV   74 (345)
T ss_dssp             CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTT----S-CEEEEECCTTCSEEEEEESSHHHHHHHHH
T ss_pred             ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----C-CeEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence            3345556799999  67889988876621 11    1 23445566689999999999777776654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=89.83  E-value=0.022  Score=47.66  Aligned_cols=64  Identities=9%  Similarity=-0.047  Sum_probs=41.1

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~  291 (337)
                      ..|+|+|||+.++++.|.+.. ..-     +|..+.      .+..++||||+|.+.+.+..|+.  +.. -|.++.|.
T Consensus       105 ~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~  178 (196)
T 1l3k_A          105 KKIFVGGIKEDTEEHHLRDYFEQYG-----KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR  178 (196)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHTTTS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEE
T ss_pred             ceEEEeCCCCCCCHHHHHHHHhcCC-----CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEE
Confidence            568999999999888766521 111     122222      45678999999999877777764  333 34455444

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=89.76  E-value=0.052  Score=48.84  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             cccccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP  290 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv  290 (337)
                      ......|+|+|||+.++++.|.+. ..+-     +|..|.|    +.+++||||+|.+.+.+..|+  ++..|+ .++.|
T Consensus        38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-----~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v  112 (292)
T 2ghp_A           38 NRELTTVLVKNLPKSYNQNKVYKYFKHCG-----PIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIV  112 (292)
T ss_dssp             ----CEEEEEEECTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-----CeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEE
Confidence            344567999999999998886662 1111     3444443    236899999999977766665  455544 34433

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=89.66  E-value=0.023  Score=49.74  Aligned_cols=65  Identities=8%  Similarity=-0.245  Sum_probs=41.1

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+.-  ...  -+|..|.     .+..++||||+|.+.+.+..|+.  +.. -|.++.|.
T Consensus       110 ~~l~V~nLp~~~t~~~L~~~F--~~~--G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~  182 (193)
T 2voo_A          110 RSVYIKGFPTDATLDDIKEWL--EDK--GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLIL  182 (193)
T ss_dssp             TEEEEECCCTTCCHHHHHHHH--TTS--CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEE
T ss_pred             CEEEecCCCCcCCHHHHHHHH--hcC--CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence            568999999998887655411  100  0233332     25678999999999888777764  333 34455544

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.45  E-value=0.067  Score=40.84  Aligned_cols=65  Identities=6%  Similarity=-0.118  Sum_probs=41.1

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ...|||+|+  .++++.|.+.  +.  .--+|..|.|...++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus        15 ~~~l~V~n~--~~t~~~l~~~--F~--~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~   83 (97)
T 1x5p_A           15 GNTLYVYGE--DMTPTLLRGA--FS--PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI   83 (97)
T ss_dssp             CSEEEEECS--SCCHHHHHHH--HT--TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred             CCEEEEcCC--CCCHHHHHHH--Hh--hCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence            356899984  5555554331  11  1115777788899999999999977766665   4544 444555543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=89.45  E-value=0.061  Score=45.64  Aligned_cols=66  Identities=9%  Similarity=-0.064  Sum_probs=41.9

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv  289 (337)
                      ....|+|+|||+.++++.|.+.. .+-     .|..+.      .+..++||||+|.+.+.+..|+   ++..|+ .++.
T Consensus       124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~  198 (216)
T 2qfj_A          124 AFNRIYVASVHQDLSDDDIKSVFEAFG-----KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR  198 (216)
T ss_dssp             TSCEEEEECCCTTCCHHHHHHHHTTSS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred             CCcEEEEeCCCCcCCHHHHHHHHhccC-----CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence            34568999999999888766521 111     233333      3456899999999977766554   455554 4544


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       199 V~  200 (216)
T 2qfj_A          199 VG  200 (216)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=89.31  E-value=0.027  Score=45.47  Aligned_cols=62  Identities=8%  Similarity=0.080  Sum_probs=38.1

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      .|+|+|+|+.++++.|.+. ...-.+. +..+..  ..+..++||||+|.+.+.+..|+   ++..|++
T Consensus        89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  156 (166)
T 3md3_A           89 NLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG  156 (166)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred             eEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence            4889999999988776652 1111000 011111  24567889999999977766665   4555543

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=89.27  E-value=0.078  Score=44.82  Aligned_cols=65  Identities=6%  Similarity=-0.180  Sum_probs=42.2

Q ss_pred             cccCCccccc-ccccCCccchhhhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERF-EFDKDAPLDDEEIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf-~~tEealldN~~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||+|||+ .++++.|.+.-  ... + +|..|.+-.+ ++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         4 ~~l~v~nlp~~~~~~~~l~~~F--~~~-G-~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~   74 (198)
T 1qm9_A            4 SVLLVSNLNPERVTPQSLFILF--GVY-G-DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT   74 (198)
T ss_dssp             CEEEEECCCSSSCCHHHHHHHH--HTT-C-CCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred             cEEEEeCCCcccCCHHHHHHHH--Hhc-C-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence            5689999999 89988766521  111 1 2445555433 689999999977766664   4544 55566554

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=88.81  E-value=0.12  Score=45.29  Aligned_cols=66  Identities=6%  Similarity=-0.175  Sum_probs=41.1

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEec--CCcccchhhhhhhHhhHHHHh---hhhcc-C--CcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI--GQSFRFSAIEARREEQIKAAH---DEAMF-G--ASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI--nqsk~fA~vEFKseetvalA~---Dgi~f-G--~ptvv~  291 (337)
                      ..-.|||+|+++.++++.|.+.. ..    + .|..+.|  ...++||||||.+.+....|+   +|..| |  .++.|.
T Consensus        45 ~vl~l~VgNL~~~vted~L~~~Fs~f----G-~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~  119 (164)
T 1sjr_A           45 PVLRIIVENLFYPVTLDVLHQIFSKF----G-TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID  119 (164)
T ss_dssp             CEEEEEECSCCSCCCHHHHHHHHHHH----S-CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred             ceEEEEEeCcCCCCCHHHHHHHHHhc----C-CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence            34458999999999988766521 11    0 1223332  335679999999977666554   55554 4  455554

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=88.37  E-value=0.051  Score=44.35  Aligned_cols=53  Identities=8%  Similarity=-0.153  Sum_probs=35.4

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~D  280 (337)
                      ..|+|+|+|+.++++.|.+. ...-     +|..+.     .+.+++||||+|.+.+.+..|+.
T Consensus        96 ~~l~v~nl~~~~t~~~l~~~F~~~G-----~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~  154 (175)
T 3nmr_A           96 RKLFIGMISKKCTENDIRVMFSSFG-----QIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIK  154 (175)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred             CeEEEcCCCCcCCHHHHHHHHHhCC-----CEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHH
Confidence            45899999999988876552 1111     122222     34568999999999777766653

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=88.33  E-value=0.094  Score=43.56  Aligned_cols=64  Identities=8%  Similarity=-0.102  Sum_probs=37.1

Q ss_pred             ccCCcccccccccCCccchhhhhhccCCceeEEecCCcccc-hhhhhhhHhhHHHH---hhhhc-cC--CcccCC
Q 019677          224 TKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRF-SAIEARREEQIKAA---HDEAM-FG--ASAVPP  291 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~f-A~vEFKseetvalA---~Dgi~-fG--~ptvv~  291 (337)
                      .|||||+++.++++.|.+.-  ..- | .|..+.|-...+| |||||.+.+....|   |+|.. +|  .++.|.
T Consensus        27 ~l~V~NL~~~vt~~~L~~~F--s~y-G-~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~   97 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVC--NPV-G-KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE   97 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHH--TTT-S-CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred             EEEEcCcCCCCCHHHHHHHH--Hhc-C-CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence            46899999999988755521  100 0 1222222111376 99999996665555   45554 45  255554

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.12  E-value=0.1  Score=39.46  Aligned_cols=65  Identities=3%  Similarity=-0.152  Sum_probs=39.6

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE-ec--CCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HI--GQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qI--nqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ...|||||||+.++++.|.+. ...-     +|..| .+  ....+.|||+|.+.+.+..|+   ++..| |.++.|.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-----~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~   87 (96)
T 2e44_A           15 IRKLQIRNIPPHLQWEVLDSLLVQYG-----VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA   87 (96)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHS-----CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHhcC-----CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence            456999999999998876652 1111     23333 22  233334999999977666554   45554 4455444

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=87.97  E-value=0.06  Score=48.39  Aligned_cols=73  Identities=8%  Similarity=0.018  Sum_probs=44.5

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh----hhcc----CCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD----EAMF----GASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D----gi~f----G~ptvv~~  292 (337)
                      ...|+|+|+|+.++++.|.+.. .+-.+..--++....+.+++||||+|.+.+.+..|+.    +.++    |-|++|..
T Consensus        96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~  175 (261)
T 3sde_A           96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP  175 (261)
T ss_dssp             SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred             CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence            3568999999999887765521 1110100011111245679999999999877766654    4444    66776654


Q ss_pred             CC
Q 019677          293 VS  294 (337)
Q Consensus       293 t~  294 (337)
                      ..
T Consensus       176 ~~  177 (261)
T 3sde_A          176 ME  177 (261)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=87.85  E-value=0.056  Score=44.58  Aligned_cols=59  Identities=17%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeE-EecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV-KHIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~-~qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|+|+|+|+.++++.|.+. ..+    + .|.. ...+.+++||||+|.+.+.+..|+   ++..|++
T Consensus       100 ~~l~v~nlp~~~t~~~l~~~F~~~----g-~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  163 (175)
T 1fje_B          100 RTLLAKNLSFNITEDELKEVFEDA----L-EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG  163 (175)
T ss_dssp             GEEEEESCCSSCCHHHHHHHCTTC----S-EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhc----C-eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence            45899999999888776552 111    1 1222 345688999999999977766665   4555543

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=87.30  E-value=0.065  Score=43.81  Aligned_cols=59  Identities=12%  Similarity=-0.039  Sum_probs=38.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|+|+|+|+.++++.+.+. ...-     ++..+.      .+.+++||||+|.+.+.+..|+   ++..|++
T Consensus        95 ~~l~v~nlp~~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  163 (172)
T 2g4b_A           95 HKLFIGGLPNYLNDDQVKELLTSFG-----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD  163 (172)
T ss_dssp             TCEEEECCCTTCCHHHHHHHHHTTS-----CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred             CEEEEEcCCCcCCHHHHHHHHHhcC-----CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence            55889999999888776552 1111     222222      4566899999999977766554   4555543

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=86.83  E-value=0.13  Score=45.90  Aligned_cols=60  Identities=10%  Similarity=-0.179  Sum_probs=39.9

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEecCCc-ccchhhhhhhHhhHHHHh---hhhccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQS-FRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqs-k~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ....|||+|||+.++++.|.+.. ..     -.|..+.+-.. ++|+||+|.+.+....|+   ++..|+
T Consensus       206 ~~~~l~v~nl~~~~~~~~l~~~F~~~-----G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~  270 (282)
T 3pgw_A          206 PNHILFLTNLPEETNELMLSMLFNQF-----PGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKIT  270 (282)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHhc-----CCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence            34569999999999888766521 11     13444554443 489999999977766665   455544

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=86.40  E-value=0.099  Score=42.13  Aligned_cols=59  Identities=7%  Similarity=-0.095  Sum_probs=38.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|+|+|+|+.++++.|.+. ...-     ++..+.      .+..++||||+|.+.+.+..|+   ++..|++
T Consensus        89 ~~l~v~nl~~~~t~~~l~~~f~~~G-----~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g  157 (167)
T 1fxl_A           89 ANLYVSGLPKTMTQKELEQLFSQYG-----RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG  157 (167)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGGS-----CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred             CcEEECCCCCcCCHHHHHHHHHhcC-----CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence            45899999998888775552 1111     122222      3456899999999977766664   4666654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=85.18  E-value=0.048  Score=45.63  Aligned_cols=66  Identities=11%  Similarity=-0.056  Sum_probs=41.2

Q ss_pred             cccccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccC-Cccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAV  289 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptv  289 (337)
                      ....|+|+|+|+.++++.|.+.. ..-     +|..+.      .+.+++||||+|.+.+.+..|+   ++..|+ .++.
T Consensus       113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-----~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~  187 (198)
T 2yh0_A          113 SAHKLFIGGLPNYLNDDQVKELLTSFG-----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL  187 (198)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHTBS-----CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHcC-----CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            34568999999999887765521 111     122222      4566899999999966665554   455554 4444


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus       188 v~  189 (198)
T 2yh0_A          188 VQ  189 (198)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=84.24  E-value=0.31  Score=42.68  Aligned_cols=61  Identities=8%  Similarity=-0.088  Sum_probs=41.4

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEec-CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-GQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-nqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ...|+|+|+|+.++++.|.+..  ... +-.|..+.+ ..+++||||+|.+.+.+..|+   ++..|+
T Consensus       151 ~~~l~V~nlp~~~t~~~l~~~f--~~~-G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~  215 (229)
T 2adc_A          151 SATLHLSNIPPSVSEEDLKVLF--SSN-GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG  215 (229)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHH--HTT-SCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred             CCEEEEeCCCccCCHHHHHHHH--HHc-CCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence            4678999999998887655521  111 213555565 568999999999977766664   466554

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=84.23  E-value=0.13  Score=45.10  Aligned_cols=64  Identities=6%  Similarity=-0.032  Sum_probs=37.4

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeE-EecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV-KHIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~-~qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|||+|||+.++++.|.+. ...-.+....|.. ...+..++||||+|.+.+....|+   ++..+++
T Consensus       124 ~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g  192 (205)
T 3tyt_A          124 NVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKN  192 (205)
T ss_dssp             SEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred             ceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence            45999999999998876652 1111110011111 112345689999999976665554   4555443

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=84.15  E-value=0.097  Score=46.85  Aligned_cols=71  Identities=13%  Similarity=-0.016  Sum_probs=42.5

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      .....|+|+|+|+.++++.|.+. ...-.+. ...+..  ..+.+++||||+|.+.+.+..|+   ++..+ |.++.|.
T Consensus        93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~  170 (284)
T 3smz_A           93 PTDALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH  170 (284)
T ss_dssp             CCSCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCCCEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence            34456899999999988876652 1111000 011111  25667899999999977766665   45544 4455443

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=83.67  E-value=0.23  Score=41.84  Aligned_cols=61  Identities=8%  Similarity=-0.088  Sum_probs=40.4

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEec-CCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHI-GQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qI-nqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ...|+|+|+|+.++++.|.+..  ... +-++..+.+ ...++||||+|.+.+.+..|+   ++..++
T Consensus       120 ~~~l~v~nl~~~~~~~~l~~~f--~~~-G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~  184 (198)
T 1qm9_A          120 SATLHLSNIPPSVSEEDLKVLF--SSN-GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLG  184 (198)
T ss_dssp             CCEEEECCCCTTCCHHHHHHHH--HHT-TSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred             ccEEEEeCCCCCCCHHHHHHHH--HHc-CCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence            4668999999999887765521  111 213444454 457899999999977766664   455554

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=83.51  E-value=0.3  Score=41.04  Aligned_cols=72  Identities=7%  Similarity=-0.088  Sum_probs=42.1

Q ss_pred             hccccccccccCCcccccccccCCccchh-hhhhccCCceeEEec-CCcccc-hhhhhhhHhhHHHHh---hhhc-cC--
Q 019677          215 LAETANKDETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI-GQSFRF-SAIEARREEQIKAAH---DEAM-FG--  285 (337)
Q Consensus       215 L~~tA~adr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI-nqsk~f-A~vEFKseetvalA~---Dgi~-fG--  285 (337)
                      +.......-.+||+|+++.++++.|.+.- ..-     +|..+.| ...++| |||||.+.+....|+   +|.. +|  
T Consensus        21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG-----~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~   95 (130)
T 3zzy_A           21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFG-----TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNAC   95 (130)
T ss_dssp             ----CCSEEEEEEESCCSCCCHHHHHHHHTTSS-----CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred             ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcC-----CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence            33344455567899999999988765521 110     1322222 345788 999999977666664   4554 56  


Q ss_pred             CcccCC
Q 019677          286 ASAVPP  291 (337)
Q Consensus       286 ~ptvv~  291 (337)
                      .++-|+
T Consensus        96 ~~LrI~  101 (130)
T 3zzy_A           96 CTLRID  101 (130)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            344444

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=83.18  E-value=0.18  Score=45.30  Aligned_cols=59  Identities=8%  Similarity=-0.007  Sum_probs=37.8

Q ss_pred             cccCCcccccc-cccCCccchh-hhhhccCCceeEEec-------CCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          223 ETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHI-------GQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qI-------nqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      ..|+|+|||+. ++++.|.+.. ..-     +|..+.+       +..++||||+|.+.+.+..|+  ++..|++
T Consensus       211 ~~l~v~nlp~~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g  280 (292)
T 2ghp_A          211 REIMIRNLSTELLDENLLRESFEGFG-----SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGN  280 (292)
T ss_dssp             TEEEEEEECTTTCCHHHHHHHHGGGS-----CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETT
T ss_pred             ceEEEECCCcccCCHHHHHHHHhccC-----CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECC
Confidence            45899999999 8887766521 111     2333333       667899999999976665554  4554443

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=81.18  E-value=0.13  Score=41.61  Aligned_cols=58  Identities=9%  Similarity=-0.051  Sum_probs=36.9

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF  284 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f  284 (337)
                      ..|+|+|+|+.++++.|.+.-  ... + +|..+.      .+..++||||+|.+.+.+..|+   ++..|
T Consensus        90 ~~l~v~nl~~~~t~~~l~~~f--~~~-G-~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~  156 (168)
T 1b7f_A           90 TNLYVTNLPRTITDDQLDTIF--GKY-G-SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP  156 (168)
T ss_dssp             CEEEEESCCTTCCHHHHHHHH--TSS-S-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred             CCEEEeCCCCCCCHHHHHHhh--hcC-C-cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence            458899999988887655511  100 0 222222      3456799999999977766664   46555

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=80.74  E-value=0.4  Score=42.05  Aligned_cols=65  Identities=8%  Similarity=-0.127  Sum_probs=41.8

Q ss_pred             cccCCcccc-cccccCCccchhhhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWER-FEFDKDAPLDDEEIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnip-f~~tEealldN~~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..||||||| +.++++.|.+.-  ... | .|+.|.|- ..++||||+|.+.+.+..|+   ++.. +|-++.|.
T Consensus         5 ~~l~V~nL~~~~~~~~~L~~~F--~~~-G-~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~   75 (205)
T 3tyt_A            5 PVLMVYGLDQSKMNCDRVFNVF--CLY-G-NVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC   75 (205)
T ss_dssp             SEEEEECCCTTTCCHHHHHHHH--TTT-S-CEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CEEEEeCCCcccCCHHHHHHHH--Hhc-C-CeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence            458999999 788888655521  100 1 34455543 35799999999977776664   4544 55566554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	97.82
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	97.04
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	96.97
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	96.87
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	96.8
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.78
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.74
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	96.68
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	96.68
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	96.64
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	96.61
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	96.6
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	96.54
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	96.53
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	96.52
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	96.45
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	96.42
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	96.42
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	96.4
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	96.39
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	96.19
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	96.17
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	96.14
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	96.13
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	96.11
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.1
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	96.0
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	96.0
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.98
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	95.97
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	95.96
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.93
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	95.89
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	95.88
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	95.81
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	95.8
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	95.79
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	95.79
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	95.79
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	95.78
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	95.71
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	95.71
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	95.68
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	95.68
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	95.61
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	95.57
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	95.5
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	95.46
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	95.43
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	95.43
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	95.41
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	95.41
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	95.39
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	95.29
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	95.29
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	95.25
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	95.21
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	95.18
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	95.15
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	95.14
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	95.07
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	94.98
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	94.98
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	94.97
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	94.94
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	94.92
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	94.83
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.81
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	94.65
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	94.52
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	94.2
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	94.03
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	93.85
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	93.84
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	93.7
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	93.38
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	93.31
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	93.25
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	93.17
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	92.81
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	92.22
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	91.56
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	90.75
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	89.36

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.9e-07  Score=66.65  Aligned_cols=69  Identities=22%  Similarity=0.212  Sum_probs=51.7

Q ss_pred             cccCCcccccccccCCccch-------hhhhhccCCceeEEecCCcccchhhhhhhHhhHH--HHhhhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-------EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIK--AAHDEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-------~~Leaie~Dpvl~~qInqsk~fA~vEFKseetva--lA~Dgi~-fG~ptvv~  291 (337)
                      +.|||||||+.++++.|.+.       ..+......++...+++.+++||||+|.+.+.+.  +++++.. .|.++.|.
T Consensus         2 RrlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~~l~g~~~~Gr~l~V~   80 (90)
T d1u2fa_           2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIR   80 (90)
T ss_dssp             CEEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGGGGSSCCSSSSCCCCB
T ss_pred             CEEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHHhhCCcEECCEEEEEC
Confidence            56999999999999998881       1233345678888889999999999999955544  4455555 56677664

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=1.7e-05  Score=57.25  Aligned_cols=65  Identities=8%  Similarity=-0.023  Sum_probs=41.4

Q ss_pred             ccCCcccccccccCCccch-hhhhhc-cCCceeEEecCCcccchhhhhhhHhhHHHHhh--hhcc-CCcc
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAA-EDDAALVKHIGQSFRFSAIEARREEQIKAAHD--EAMF-GASA  288 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leai-e~Dpvl~~qInqsk~fA~vEFKseetvalA~D--gi~f-G~pt  288 (337)
                      +|||||||+.++++.|.+- ...-.+ ....+...+++..++||||+|.+.+.+..|+.  +..| |-++
T Consensus         1 rlfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~~~~~~l~gr~i   70 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV   70 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHHCSSCCBTTBCC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHhcCCCEECCeEE
Confidence            4899999999999987772 111111 11222223367899999999999777666653  4443 3344

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=2.1e-05  Score=57.61  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=37.3

Q ss_pred             ccCCcccccccccCCccch-hh---hhh--ccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDD-EE---IEA--AEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~---Lea--ie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      +|||||||+.++++.|.+- ..   +..  +..|+    .++++++||||+|.+.+.+..|+.
T Consensus         1 klfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~----~t~~~kg~afV~f~~~~~a~~Al~   59 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDP----ITGRSRGFGFVLFKESESVDKVMD   59 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBT----TTTBCCSEEEEEESSHHHHHHHHH
T ss_pred             CEEEeCCCCcCCHHHHHHHHHhhccccccccccCC----CCCCcCceEEEEECCHHHHHHHHh
Confidence            4799999999999987772 11   110  11222    267899999999999877766654

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=4.2e-05  Score=57.61  Aligned_cols=66  Identities=11%  Similarity=0.005  Sum_probs=42.8

Q ss_pred             hccccccccccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          215 LAETANKDETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       215 L~~tA~adr~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ||........|||||||+.++++.|.+. ..+ .+.....+.....+..++||||+|.+.+.+..|+.
T Consensus         1 ~P~~~~~~~tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~   68 (98)
T d1x4ha1           1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA   68 (98)
T ss_dssp             CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHH
T ss_pred             CccCCCCCCEEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHH
Confidence            4555666778999999999999987662 111 00000001111245678999999999888777765

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=3.2e-05  Score=59.87  Aligned_cols=67  Identities=10%  Similarity=-0.025  Sum_probs=47.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh---hhccCCcccCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD---EAMFGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D---gi~fG~ptvv~~  292 (337)
                      ..|||||||+.++++.|.+. ...-     +|..+      .++.+++||||+|.+.+.+..|+.   +.+.|-++.|..
T Consensus        11 ~~lfV~nLp~~~te~~l~~~F~~~G-----~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~Gr~l~V~~   85 (103)
T d2cqda1          11 TKIFVGGLPYHTTDASLRKYFEGFG-----DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL   85 (103)
T ss_dssp             SEEEEECCCSSCCHHHHHHHHHTTS-----CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred             cEEEEeCCCCcCcHHHHHHHHhhcc-----cccceeccccccccccCCeEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence            45999999999999987662 1110     12222      256789999999999888888875   556677776654


Q ss_pred             CC
Q 019677          293 VS  294 (337)
Q Consensus       293 t~  294 (337)
                      ..
T Consensus        86 a~   87 (103)
T d2cqda1          86 AY   87 (103)
T ss_dssp             ST
T ss_pred             cC
Confidence            33

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=3.3e-05  Score=56.37  Aligned_cols=64  Identities=9%  Similarity=0.005  Sum_probs=41.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHh--hhhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG  285 (337)
                      .+.|||||||+.++++.|.+- .....+.. ..+...+.+++++||||+|.+.+.+..|+  ++..|+
T Consensus         2 ~r~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al~~~~~~l~   69 (79)
T d1l3ka2           2 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN   69 (79)
T ss_dssp             CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEET
T ss_pred             CCEEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHHHhCCCEEC
Confidence            467999999999999988772 12211111 11111236788999999999976655554  444443

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=3.4e-05  Score=57.74  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=44.3

Q ss_pred             ccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhccCCcccC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAMFGASAVP  290 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~fG~ptvv  290 (337)
                      ...+.|||||||+.++++.|.+- ...-.+. +..|..  +++.+++||||+|.+.+.+..|+.   ..+.|-.+.|
T Consensus         4 e~~~~lfV~nlp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~~~~~~i~Gr~i~V   79 (84)
T d1l3ka1           4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP   79 (84)
T ss_dssp             GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred             CCCcEEEEECCCCCCCHHHHHHHHHhhcccc-ceeecccccCCCcccEEEEEEcCHHHHHHHHHhCCCEECCEEEEE
Confidence            34567999999999999887762 1110000 111111  367899999999999877776664   3334444433

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00018  Score=55.17  Aligned_cols=64  Identities=3%  Similarity=-0.250  Sum_probs=47.5

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+.. .+     -+|..|.|...++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus        11 ~~l~V~nLp~~~t~~~L~~~F~~f-----G~I~~v~l~~~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~   79 (111)
T d1whxa_          11 TVILAKNLPAGTLAAEIQETFSRF-----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE   79 (111)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHHTT-----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred             CEEEEECCCCCCCHHHHHhhhhcc-----CCccEEEeeccCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEE
Confidence            459999999999998866622 22     15777889999999999999977776664   4555 45566553

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=6.5e-05  Score=57.09  Aligned_cols=74  Identities=9%  Similarity=-0.066  Sum_probs=47.0

Q ss_pred             ccccccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhhh--hccCCcccCCC
Q 019677          218 TANKDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHDE--AMFGASAVPPS  292 (337)
Q Consensus       218 tA~adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~Dg--i~fG~ptvv~~  292 (337)
                      .......|||||||+.++++.|.+. ..+-.+. +.-|..  .++.+++||||+|.+.+.+..|+..  .+-|-++.|..
T Consensus         4 ~~~~~~~lfV~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~~l~Gr~i~v~~   82 (90)
T d2cqga1           4 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKL   82 (90)
T ss_dssp             CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEEC
T ss_pred             CCcCCCeEEEECCCCCCCHHHHHHHHHhhcccc-eeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCCccCCEEeEEEe
Confidence            3445567999999999999987772 1111010 111222  3678899999999998888777763  23344554443

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=6.3e-05  Score=56.45  Aligned_cols=74  Identities=18%  Similarity=0.082  Sum_probs=45.4

Q ss_pred             cccccccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          219 ANKDETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       219 A~adr~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      +.+.+.|||||||+.++++.|.+. ..+ .+....-+....+++.++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         2 a~~~~tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~   81 (89)
T d2cqba1           2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL   81 (89)
T ss_dssp             CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred             CCCCcEEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            345567999999999998876662 111 1000000111136788999999999977665554   4554 455665543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=3.8e-05  Score=56.65  Aligned_cols=66  Identities=6%  Similarity=0.028  Sum_probs=41.6

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      +|||||||+.++++.|.+. ..+-.+. +..|..  +++..++||||+|.+.+.+..|+   ++..+ |-++.|
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~-~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v   74 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI   74 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEe-EEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence            4899999999999987762 1121010 111111  25677899999999977777765   35554 444444

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=8.9e-05  Score=55.39  Aligned_cols=71  Identities=8%  Similarity=-0.000  Sum_probs=44.2

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~  291 (337)
                      ....|||||||+.++++.|.+. ...-.+.. ..+.....+..++||||+|.+.+.+..|+   ++..|+ -++.|.
T Consensus         4 ~~~kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~   80 (90)
T d1x5sa1           4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD   80 (90)
T ss_dssp             CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred             CCCEEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            3456999999999999887762 11111110 01111135678999999999977766664   455544 455554

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00015  Score=53.10  Aligned_cols=65  Identities=8%  Similarity=-0.150  Sum_probs=45.9

Q ss_pred             cCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCCCC
Q 019677          225 KGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPSVS  294 (337)
Q Consensus       225 L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~t~  294 (337)
                      |||||||+.++++.+.+.  +... +  +..+.++..++||||+|.+.+.+..|++   +.. .|.++.|.-..
T Consensus         1 i~V~nLp~~~t~~~l~~~--F~~~-g--~~~~~~~~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~   69 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDL--LSDY-E--LKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQP   69 (75)
T ss_dssp             EEEECCCTTCCHHHHHHH--TTTS-C--EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred             CEEeCCCCcCCHHHHHHH--Hhcc-c--ccceeecccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeC
Confidence            589999999999886652  1111 1  5667789999999999999777766653   444 56666665433

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=9e-05  Score=53.15  Aligned_cols=64  Identities=8%  Similarity=-0.070  Sum_probs=41.0

Q ss_pred             cCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHH---hhhhccCCcc
Q 019677          225 KGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAA---HDEAMFGASA  288 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA---~Dgi~fG~pt  288 (337)
                      |||||||+.++++.+.+. ... .+.....+...+.+..++||||+|.+.+.+..|   +++..|++-+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~   69 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM   69 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEE
Confidence            689999999999987662 111 111111111223677999999999997766555   4566666544

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=6.7e-05  Score=58.17  Aligned_cols=69  Identities=7%  Similarity=-0.068  Sum_probs=42.5

Q ss_pred             cccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHH--HHhhhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIK--AAHDEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetva--lA~Dgi~-fG~ptvv~  291 (337)
                      +.|||||||+.++++.|.+. ..+ .+....-+...+.+++++||||+|.+.+.+.  +++++.. .|.++.|+
T Consensus        19 ~tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~~l~g~~~~G~~l~V~   92 (101)
T d2cq4a1          19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ   92 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence            45899999999999987662 111 1111111111235789999999999966554  4556555 44455554

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00011  Score=56.66  Aligned_cols=72  Identities=13%  Similarity=-0.033  Sum_probs=45.2

Q ss_pred             cccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccC-CcccCCCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPPSVS  294 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~~t~  294 (337)
                      ..|||+|||+.++++.|.+. ..+ ..+....+.....+.+++||||+|.+.+.+..|+   ++..|+ -++.|....
T Consensus        19 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~   96 (102)
T d2cpza1          19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR   96 (102)
T ss_dssp             CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeC
Confidence            35999999999999887662 111 1111111222236788899999999977666554   566555 466655433

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00017  Score=53.15  Aligned_cols=57  Identities=9%  Similarity=-0.048  Sum_probs=37.0

Q ss_pred             ccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      .|||||||+.++++.|.+- ... .+....-+....++.+++||||+|.+++.+..|+.
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~   60 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA   60 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH
Confidence            4799999999999987761 111 10000001112368899999999999777666653

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=7.6e-05  Score=58.15  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=43.6

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh--hhc-cCCcccCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD--EAM-FGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D--gi~-fG~ptvv~~  292 (337)
                      +.|||||||+.++++.|.+. ...-.+ .+..|..  .+++.++||||+|.+.+.+..|+.  +.. .|-++.|..
T Consensus        21 ~~lfVgnLp~~~te~~L~~~F~~~G~i-~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al~~~~~~l~G~~i~V~~   95 (103)
T d1x4ba1          21 RKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR   95 (103)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHhhCcc-cceeecccccCCCccCeEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence            56999999999999987662 111000 1112222  257899999999999777666553  334 455665543

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00019  Score=52.72  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             cCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCCC
Q 019677          225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPPS  292 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~~  292 (337)
                      |||||||+.++++.|.+. ...-.+.....+..  +.+++++||||+|.+.+.+..|+   ++..| |.++.|..
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~   75 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY   75 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEE
Confidence            689999999999887662 11111111112222  35788999999999977776665   45554 44555543

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=96.39  E-value=0.00014  Score=55.12  Aligned_cols=70  Identities=16%  Similarity=0.040  Sum_probs=45.6

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhc-cCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAM-FGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~-fG~ptvv  290 (337)
                      ....|||||||+.++++.|.+. ...-.+..=-++....+.+++||||+|.+.+.+..|+  ++.. .|-++.|
T Consensus        12 ~~~~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~~~g~~~~g~~i~V   85 (91)
T d1fjeb1          12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL   85 (91)
T ss_dssp             SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEE
T ss_pred             CCcEEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHhcCCcEECCEEEEE
Confidence            3456999999999999988772 1111111112334457899999999999977766554  4444 4445444

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00045  Score=52.66  Aligned_cols=63  Identities=10%  Similarity=-0.032  Sum_probs=45.1

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccC-Ccc
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASA  288 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG-~pt  288 (337)
                      ....|+|||||+.++++.|.+. ...-     +|..+.|..+++||||+|.+.+.+..|+   ++..++ .++
T Consensus        17 ~~~~l~v~nL~~~~te~~L~~~F~~fG-----~i~~v~i~~~kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l   84 (96)
T d1x4ga1          17 KNCTVYCGGIASGLTDQLMRQTFSPFG-----QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVV   84 (96)
T ss_dssp             SCCEEEEECCSSCCCHHHHHHHHHHHS-----CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred             CCCEEEEcCCCCCCCHHHHHHHHHHhC-----CceEEEEEecceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence            3456999999999998876552 1221     4777788889999999999977776665   455444 344

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.00031  Score=53.69  Aligned_cols=66  Identities=18%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh--hhccC-CcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD--EAMFG-ASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D--gi~fG-~ptvv  290 (337)
                      .+||+|||+.++++.|.+- .....+. +.++..  ..++.++||||+|.+.+.+..|++  +..|+ -++.|
T Consensus        10 ~v~v~nLp~~~t~~~l~~~F~~~g~i~-~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~~n~~~i~gr~i~V   81 (103)
T d2cpya1          10 CAHITNIPFSITKMDVLQFLEGIPVDE-NAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV   81 (103)
T ss_dssp             EEEEESCCTTSCHHHHHHHTTTSCCCS-TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred             EEEEeCCCCCCCHHHHhhhhcccceEE-EEEEEEeCCCCCcCccEEEEECCHHHHHHHHhcCCCeECCcEEEE
Confidence            4899999999999887771 1111111 122222  267889999999999888777764  44444 44444

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.00033  Score=53.65  Aligned_cols=71  Identities=10%  Similarity=0.009  Sum_probs=43.9

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHH---hhhhc-cCCcccCCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAA---HDEAM-FGASAVPPSV  293 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA---~Dgi~-fG~ptvv~~t  293 (337)
                      ..|||||||+.++++.|.+. ...-.+..-.++....+.+++||||+|.+.+.+..|   ++|.. .|-|+.|.++
T Consensus        19 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~   94 (101)
T d1x5oa1          19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT   94 (101)
T ss_dssp             TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCC
Confidence            35999999999998876652 111111111111123567789999999997776555   45555 4557766543

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.13  E-value=0.00016  Score=52.91  Aligned_cols=64  Identities=8%  Similarity=0.014  Sum_probs=42.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhccC-CcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv  290 (337)
                      +..|||||||+.++++.|.+. ...-     +|..|      ..+..++||||+|.+.+.+..|+   ++..++ .++.|
T Consensus         2 ~t~l~V~nLp~~~t~~~l~~~F~~~G-----~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v   76 (82)
T d1b7fa1           2 NTNLIVNYLPQDMTDRELYALFRAIG-----PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV   76 (82)
T ss_dssp             CSEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhC-----CcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            346899999999999987762 1111     12222      24577899999999977766665   455544 34433

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0009  Score=49.75  Aligned_cols=61  Identities=13%  Similarity=-0.038  Sum_probs=42.0

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHH---hhhhccC-CcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAA---HDEAMFG-ASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA---~Dgi~fG-~ptvv  290 (337)
                      .|||||||+.++++.|.+. ...    | +|+.+.|.. .+||||+|.+.+.+..|   |++..|. ..+.|
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~----G-~v~~~~i~~-~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v   67 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREA----G-DVCYADVYR-DGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET   67 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGG----S-CEEEEEECT-TSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred             eEEEECCCCcCCHHHHHHHHhhh----c-ccccccccc-cceeeEEeCCHHHHHHHHHHhCCCEECCcEeEE
Confidence            4899999999999987662 111    1 366666654 48999999997776555   4566664 45444

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00023  Score=52.99  Aligned_cols=63  Identities=10%  Similarity=-0.104  Sum_probs=42.7

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHhh---hhcc-CCcccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAHD---EAMF-GASAVPP  291 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~D---gi~f-G~ptvv~  291 (337)
                      +|||||||+.++++.|.+. ..+-     +|..+      .++.+++||||+|.+.+.+..|+.   +..+ |.++.|.
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G-----~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~   76 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFG-----PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ   76 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSS-----CEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcC-----ccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            5899999999999887662 1111     12222      257889999999999877776654   5444 4455544

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.00025  Score=54.42  Aligned_cols=66  Identities=11%  Similarity=-0.029  Sum_probs=41.6

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE-ecCCcccchhhhhhhHhhHHHH--hhhhccCC-cccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-HIGQSFRFSAIEARREEQIKAA--HDEAMFGA-SAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-qInqsk~fA~vEFKseetvalA--~Dgi~fG~-ptvv  290 (337)
                      ..+||+||||.++++.|.+- ..+..  .+.++.. ..++.++||||+|.+.+.+..|  +++..|++ .+.|
T Consensus        16 ~~v~v~nLp~~~te~dl~~~F~~~~~--~~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~~~~~~i~gR~I~V   86 (102)
T d1weza_          16 HCVHMRGLPYRATENDIYNFFSPLNP--MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL   86 (102)
T ss_dssp             CEEEEESCCTTCCHHHHHHSSCSCCC--SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHhccCc--ceeeeEEecCCcceEEEEEEECCHHHHHHHHHcCCCEECCEEEEE
Confidence            45899999999999987761 11211  1112222 2567899999999996665544  45666554 4433

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.00031  Score=52.15  Aligned_cols=63  Identities=8%  Similarity=-0.092  Sum_probs=40.3

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      +..|||||||+.++++.|.+. ...-.+. +..+..  ..+..++||||+|.+.+.+..|+   ++..|+
T Consensus         6 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~   74 (85)
T d1fxla2           6 DANLYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS   74 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHhCCcc-ccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeC
Confidence            455999999999999887662 1211000 111111  24678899999999977776665   455554

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.00016  Score=55.04  Aligned_cols=65  Identities=11%  Similarity=-0.082  Sum_probs=43.0

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+.. ..-     +|..|.      ++..++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus         9 ~~lfV~nL~~~~t~~~l~~~F~~~g-----~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~   83 (99)
T d1whwa_           9 GRLFVRNLSYTSSEEDLEKLFSAYG-----PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL   83 (99)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHTTS-----CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred             CEEEEECCCCcCCHHHHHHHHHhcC-----CceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            359999999999998876621 111     222222      5677889999999976655554   55555 5566555


Q ss_pred             C
Q 019677          292 S  292 (337)
Q Consensus       292 ~  292 (337)
                      .
T Consensus        84 ~   84 (99)
T d1whwa_          84 P   84 (99)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.00021  Score=54.78  Aligned_cols=69  Identities=16%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCce-eEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAA-LVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpv-l~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      .+.|||+|||+.++++.|.+. ..+-  +-..| +..  ..++.++||||+|.+.+.+..|+   ++.. .|.++.|..
T Consensus         8 ~rtl~V~nLp~~~te~~l~~~f~~~G--~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~   84 (104)
T d1p1ta_           8 LRSVFVGNIPYEATEEQLKDIFSEVG--PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN   84 (104)
T ss_dssp             HSCEEEESCCTTSCHHHHHHHHHTTS--CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred             CCEEEEECCCCcCCHHHHHHhhhccc--cccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence            356999999999999887662 1111  11112 111  24677899999999977766664   4444 555666654

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.00054  Score=51.21  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=43.4

Q ss_pred             cccccCCcccccccccCCccch-hhhhhccCCceeEEec----CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI----GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI----nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..+.|||||||+.++++.|.+. ...    | +|..|.+    +..++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         7 ~~~tl~V~nLp~~~te~~l~~~F~~~----G-~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~   81 (90)
T d2cqia1           7 QPRTLYVGNLSRDVTEVLILQLFSQI----G-PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN   81 (90)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHHHH----S-CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHhc----C-CceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            3457999999999998886662 122    1 2333332    345789999999977766664   4544 55566554

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.00049  Score=52.05  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=43.8

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe-------cCCcccchhhhhhhHhhHHHHhh----hh-ccCCccc
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-------IGQSFRFSAIEARREEQIKAAHD----EA-MFGASAV  289 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-------Inqsk~fA~vEFKseetvalA~D----gi-~fG~ptv  289 (337)
                      ..|||+|||+.++++.|.+. ...    | +|..|.       .++.++||||+|.+.+.+..|+.    +. +.|-++.
T Consensus         9 ~~l~V~nLp~~~~e~~l~~~F~~~----G-~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~   83 (94)
T d2cpha1           9 SKILVRNIPFQANQREIRELFSTF----G-ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV   83 (94)
T ss_dssp             CCEEEESCCTTCCHHHHHHHHHTT----S-CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHh----C-CceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEE
Confidence            45999999999999987662 111    1 122222       45678999999999777666653    43 4566666


Q ss_pred             CCCC
Q 019677          290 PPSV  293 (337)
Q Consensus       290 v~~t  293 (337)
                      |.-.
T Consensus        84 V~~A   87 (94)
T d2cpha1          84 LEWA   87 (94)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6533

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.00037  Score=52.68  Aligned_cols=68  Identities=21%  Similarity=0.121  Sum_probs=44.3

Q ss_pred             ccccccCCcccccccccCCccchhhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhcc-CCccc
Q 019677          220 NKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAV  289 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptv  289 (337)
                      ..+..|||||||+.++++.|.+.  +... + +|+.+.      ++..++||||+|.+.+.+..|+   ++..+ |.++.
T Consensus         7 ~~~~tlfV~nLp~~~t~~~l~~~--F~~~-G-~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   82 (93)
T d1x5ua1           7 NQDATVYVGGLDEKVSEPLLWEL--FLQA-G-PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR   82 (93)
T ss_dssp             CTTTEEEEECCCTTCCHHHHHHH--HHTT-S-CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHH--HHHh-C-CccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence            34567999999999998876652  1111 1 233332      5678899999999977766554   45554 45665


Q ss_pred             CC
Q 019677          290 PP  291 (337)
Q Consensus       290 v~  291 (337)
                      |.
T Consensus        83 V~   84 (93)
T d1x5ua1          83 VN   84 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.00043  Score=54.02  Aligned_cols=63  Identities=19%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             ccCCcccccccccCCccch-hhhhhcc-CCceeEEecCCcccchhhhhhhHhhHHHH--hhhhccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAE-DDAALVKHIGQSFRFSAIEARREEQIKAA--HDEAMFGA  286 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie-~Dpvl~~qInqsk~fA~vEFKseetvalA--~Dgi~fG~  286 (337)
                      .|+|+||||.++++.|.+- .++..+. .-.++.-..+..++||||+|.+.+.+..|  +++..||+
T Consensus        20 ~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~~~~~~i~g   86 (112)
T d1wela1          20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGN   86 (112)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTT
T ss_pred             EEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHHcCCCcCCC
Confidence            4899999999999887762 1111111 11122223578899999999996665555  45666554

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.00023  Score=52.23  Aligned_cols=53  Identities=15%  Similarity=0.060  Sum_probs=38.3

Q ss_pred             ccCCcccccccccCCccch-hhh---h--hccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEI---E--AAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~L---e--aie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      +|||||||+.++++.|.+. ...   .  .+.-|+    +++.+++||||+|.+.+.+..|++
T Consensus         1 klfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~----~t~~~rG~~FV~f~~~~~a~~al~   59 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN----KTNKRRGFCFITFKEEEPVKKIME   59 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCT----TTCCTTCCEEEEESSSHHHHHHTT
T ss_pred             CEEEcCCCCCCCHHHHHHHHHHhCCcccccccccc----cccccccEEEEEECCHHHHHHHHh
Confidence            3799999999999987772 111   1  112232    267889999999999888877775

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.00064  Score=51.21  Aligned_cols=73  Identities=11%  Similarity=-0.008  Sum_probs=45.7

Q ss_pred             cccccCCcccccccccCCccch-hh---hhh---ccCCceeEE---ecCCcccchhhhhhhHhhHHHH---hhhhccC-C
Q 019677          221 KDETKGSGWERFEFDKDAPLDD-EE---IEA---AEDDAALVK---HIGQSFRFSAIEARREEQIKAA---HDEAMFG-A  286 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN-~~---Lea---ie~Dpvl~~---qInqsk~fA~vEFKseetvalA---~Dgi~fG-~  286 (337)
                      ....|||||||+.++++.|.+. ..   +..   .....+...   +++..++||||+|.+.+.+..|   +++..|+ -
T Consensus         7 ~~~~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr   86 (101)
T d2cpea1           7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS   86 (101)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred             CCCEEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCE
Confidence            3457999999999999987772 11   111   111111111   2467889999999997776655   4566654 4


Q ss_pred             cccCCCC
Q 019677          287 SAVPPSV  293 (337)
Q Consensus       287 ptvv~~t  293 (337)
                      ++.|...
T Consensus        87 ~i~V~~a   93 (101)
T d2cpea1          87 KLKVSLA   93 (101)
T ss_dssp             ECEEECS
T ss_pred             EEEEEEc
Confidence            6666543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.00098  Score=50.51  Aligned_cols=60  Identities=12%  Similarity=-0.072  Sum_probs=43.9

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|||+|||+.++++.|.+..  ...  -+|..+.+...++||||+|.+.+.+..|+   ++..+++
T Consensus        18 ~tl~V~nLp~~~t~~~l~~~f--~~~--G~i~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~g   80 (97)
T d1whya_          18 TRLWVGGLGPNTSLAALAREF--DRF--GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGG   80 (97)
T ss_dssp             SCEEEECCCSSCCHHHHHHHH--HTT--SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred             CEEEEcCCCCCCCHHHHHHHH--Hhh--cccceEeeeccccEEEeccCCHHHHHHHHHHhCCCEeCC
Confidence            569999999999888755521  111  15778888899999999999977766665   4555543

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.00047  Score=50.74  Aligned_cols=63  Identities=14%  Similarity=-0.030  Sum_probs=40.5

Q ss_pred             cCCcccccccccCCccch-hhhhhccCCceeEEe------c---CCcccchhhhhhhHhhHHHHh---hhhc-cCCcccC
Q 019677          225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------I---GQSFRFSAIEARREEQIKAAH---DEAM-FGASAVP  290 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------I---nqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv  290 (337)
                      |||||||+.++++.|.+. ...-     +|..|.      .   ..+++||||+|.+.+.+..|+   ++.. .|.++.|
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G-----~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V   75 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVG-----AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV   75 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhC-----CccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            689999999999887662 1111     122222      1   135789999999977766654   4545 5556666


Q ss_pred             CC
Q 019677          291 PS  292 (337)
Q Consensus       291 ~~  292 (337)
                      .-
T Consensus        76 ~~   77 (85)
T d2cpfa1          76 RI   77 (85)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.00046  Score=51.02  Aligned_cols=66  Identities=6%  Similarity=-0.033  Sum_probs=44.6

Q ss_pred             ccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      .+.|||||||+.++++.|.+..  ...  -++..+.+...++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         8 ~k~l~V~nLp~~~te~~l~~~F--~~~--g~i~~~~~~~~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~   77 (86)
T d2cpda1           8 VKILYVRNLMLSTSEEMIEKEF--NNI--KPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT   77 (86)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHH--HTT--STTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred             CCEEEEcCCCCCCCHHHHHHhh--ccc--ceeeeEEEccccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            3569999999999998766521  111  12344567788999999999977766554   4444 45555554

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0002  Score=53.39  Aligned_cols=63  Identities=8%  Similarity=-0.196  Sum_probs=41.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE-----ecCCcccchhhhhhhHhhHHHHhh--hhcc-CCcccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK-----HIGQSFRFSAIEARREEQIKAAHD--EAMF-GASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~-----qInqsk~fA~vEFKseetvalA~D--gi~f-G~ptvv  290 (337)
                      +.|||+|||+.++++.|.+- ...-     ++..|     ..+..++||||+|.+++.+..|+.  +..| |.++.|
T Consensus         7 rtvfV~nlp~~~te~~l~~~F~~~G-----~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~~~~~~~~g~~l~v   78 (85)
T d1zh5a2           7 RSVYIKGFPTDATLDDIKEWLEDKG-----QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLI   78 (85)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHTTSC-----CEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHTCCCCEETTEECEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhc-----ccccceeeeeccCCcceEEEEEEcCHHHHHHHHHHCCCEECCEEEEE
Confidence            46999999999999887662 1110     12222     245678899999999777766654  4443 344444

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.00028  Score=51.48  Aligned_cols=62  Identities=8%  Similarity=-0.027  Sum_probs=40.7

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE------ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK------HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~------qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      .|||||||+.++++.|.+. ...    | +|..|      ..+..++||||+|.+.+.+..|+   ++..| |.++.|
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~~~----G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v   76 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFGSI----G-EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV   76 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTT----S-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHh----C-CcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            4899999999999886662 111    0 12222      24678889999999987776665   45554 444433

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.71  E-value=0.00024  Score=52.61  Aligned_cols=58  Identities=10%  Similarity=0.000  Sum_probs=37.7

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeE--EecCCcccchhhhhhhHhhHHHHhh
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV--KHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~--~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ...|||+|||+.++++.|.+. ..+-.+. +.-+.  ...+++++||||+|.+.+.+..|+.
T Consensus         6 ~t~lfV~nlp~~~te~~l~~~F~~~G~i~-~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~   66 (85)
T d1b7fa2           6 DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAIS   66 (85)
T ss_dssp             TCEEEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHhhCCEe-eeeeecccccccCceeEEEEECCHHHHHHHHH
Confidence            345999999999999987662 1111010 01111  1356788999999999877776654

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.00099  Score=51.10  Aligned_cols=65  Identities=8%  Similarity=-0.110  Sum_probs=47.5

Q ss_pred             ccccCCcccccccccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh-----hhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD-----EAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D-----gi~-fG~ptvv~  291 (337)
                      ...|||+|||+.++++.|++.. ..     -+|..+.+...+++|||||.+.+.+..|++     ++. .|.++.|.
T Consensus        15 s~~l~v~nlp~~~te~~l~~~F~~f-----G~I~~~~~~~~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~   86 (104)
T d1wexa_          15 SPVVHVRGLCESVVEADLVEALEKF-----GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN   86 (104)
T ss_dssp             CSEEEEESCCSSCCHHHHHHHHTTT-----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHhhhhc-----ccceEEEEEecceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEE
Confidence            3458999999999988766521 11     256777788899999999999887777764     333 45677665

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.00029  Score=51.82  Aligned_cols=66  Identities=8%  Similarity=-0.082  Sum_probs=44.5

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hh-h-ccCCcccCCCCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DE-A-MFGASAVPPSVS  294 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dg-i-~fG~ptvv~~t~  294 (337)
                      .|||||||+.++++.|.+. ...-     +++.+.+...++||||+|.+.+.+..|+   .| . +.|.++.|....
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G-----~i~~~~~~~~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~   74 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRK-----LPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV   74 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTT-----CCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC-----cEEEeEEecccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcC
Confidence            5899999999998876662 1111     2233345567899999999977766554   45 3 456777776544

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0017  Score=48.92  Aligned_cols=69  Identities=9%  Similarity=-0.096  Sum_probs=45.2

Q ss_pred             cccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+. ..+..+.. .-......+..++||||+|.+.+.+..|+   ++..| |-++.|.
T Consensus        19 ~tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~   93 (102)
T d2cpxa1          19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE   93 (102)
T ss_dssp             SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEE
Confidence            45999999999999887762 22211222 12222346789999999999977766664   45554 5566554

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.00041  Score=51.83  Aligned_cols=63  Identities=11%  Similarity=0.004  Sum_probs=42.3

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHhh---hhccC-CcccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAHD---EAMFG-ASAVPP  291 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~D---gi~fG-~ptvv~  291 (337)
                      .|||+|||+.++++.|.+. ...     -+|..|.    .+.+++||||+|.+.+.+..|++   +..++ -++.|.
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~~-----G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~   81 (89)
T d1cvja2          10 NIFIKNLDKSIDNKALYDTFSAF-----GNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG   81 (89)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTT-----SCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhc-----CCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            4899999999999887662 111     1233333    34568899999999888777764   55544 455554

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.00046  Score=50.41  Aligned_cols=62  Identities=11%  Similarity=0.013  Sum_probs=40.4

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEe-----cCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-----IGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-----Inqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      +|||+|||+.++++.|.+. ...-     +|..|.     .+++++||||+|.+.+.+..|+   ++..| |-++.|
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~~~G-----~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V   73 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFAEFG-----TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI   73 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHS-----CEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhC-----CCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            4899999999999987762 1111     222222     4567889999999977665554   45554 444433

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.00032  Score=53.00  Aligned_cols=64  Identities=9%  Similarity=-0.097  Sum_probs=42.1

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||||||+.++++.|.+. ...    | +|..+.      .+..++||||+|.+.+.+..|+   ++.. .|-++.|.
T Consensus         8 ~tlfV~nlp~~~te~~l~~~F~~~----G-~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~   82 (93)
T d1h2vz_           8 CTLYVGNLSFYTTEEQIYELFSKS----G-DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD   82 (93)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHGGG----S-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHH----C-CcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            46899999999998876652 111    1 233333      4567889999999977766665   4444 55565554

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.00077  Score=52.04  Aligned_cols=65  Identities=6%  Similarity=-0.163  Sum_probs=43.9

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe---cCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH---IGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q---Inqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      .+.|||||||+.++++.|.+. ...-     +|..|.   ...+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         7 ~r~l~V~nLp~~~te~~l~~~F~~~G-----~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~   79 (114)
T d2f9da1           7 NRILYIRNLPYKITAEEMYDIFGKYG-----PIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVL   79 (114)
T ss_dssp             CSEEEEESCCTTCCHHHHHHHHHTTS-----CEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcC-----CeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            456999999999998887662 1111     233333   4567899999999977766664   4555 45566664

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.43  E-value=0.0005  Score=51.31  Aligned_cols=62  Identities=16%  Similarity=0.003  Sum_probs=39.1

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      ..|||+|||+.++++.|.+. ...-.+.. .-+..  .+++.++||||+|.+.+.+..|+   ++..++
T Consensus         8 ~~l~V~nL~~~~t~~~l~~~F~~~G~i~~-v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~   75 (88)
T d1rk8a_           8 WILFVTSIHEEAQEDEIQEKFCDYGEIKN-IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM   75 (88)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHGGGSCEEE-EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCCccc-ccccccccccccccceeEEECCHHHHHHHHHHcCCCEEC
Confidence            45899999999999887662 11110100 11111  25678899999999977766664   455444

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.00044  Score=56.52  Aligned_cols=58  Identities=16%  Similarity=0.060  Sum_probs=40.0

Q ss_pred             cccCCcccccccccCCccch-hhh-hhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      +.|||||||+.++++.|.+- ..+ .+...+.+...+++..++||||+|.+.+.+..|+.
T Consensus         7 r~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~   66 (183)
T d1u1qa_           7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN   66 (183)
T ss_dssp             HEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHH
Confidence            56999999999999987772 121 11111222223467889999999999888877765

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0012  Score=48.90  Aligned_cols=68  Identities=6%  Similarity=-0.193  Sum_probs=47.0

Q ss_pred             ccccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh-----hhc-cCCcccCC
Q 019677          220 NKDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD-----EAM-FGASAVPP  291 (337)
Q Consensus       220 ~adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D-----gi~-fG~ptvv~  291 (337)
                      ...+.|||||||+.++++.|.+.-  .  +--.|..+.+...+++|||+|.+.+.+..|+.     ++. .|-++.|.
T Consensus         6 ~Ps~~l~V~nLp~~~t~~~L~~~f--~--~~G~i~~v~~~~~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~   79 (88)
T d2cq1a1           6 APSRVLHIRKLPGEVTETEVIALG--L--PFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ   79 (88)
T ss_dssp             SCCSEEEEESCCTTCCHHHHHHTT--T--TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHH--h--cccccccccccccceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEE
Confidence            344569999999999988876621  1  11246667778889999999999777666654     333 45566554

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.00075  Score=50.50  Aligned_cols=64  Identities=11%  Similarity=-0.099  Sum_probs=44.5

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+.-  ... +  +..+.+...++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         6 ~~i~V~nLp~~~t~~~l~~lF--~~~-G--~~~~~~~~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~   73 (88)
T d1wg1a_           6 SGILVKNLPQDSNCQEVHDLL--KDY-D--LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ   73 (88)
T ss_dssp             CCEEEESCCSSCCHHHHHHHT--CSS-C--CCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             CEEEEeCCCCccChHHHHHHH--Hhc-C--ceeeeeeccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            468999999999988766621  111 1  345678889999999999977766664   4544 45566554

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.29  E-value=0.00053  Score=54.89  Aligned_cols=69  Identities=10%  Similarity=-0.017  Sum_probs=43.4

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ..|||||||+.++++.|.+. ..+-.+. +..|..  .++..++||||+|.+.+.+..|+   ++.. .|-++.|.-
T Consensus        43 ~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~  118 (139)
T d1u6fa1          43 RNLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL  118 (139)
T ss_dssp             SEEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhcccc-ccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            35999999999999877662 1111010 011111  24678899999999977766554   4555 455666654

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.00079  Score=51.59  Aligned_cols=69  Identities=14%  Similarity=0.030  Sum_probs=42.0

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccC-CceeEEecCCcccchhhhhhhHhhHHHHh--hhhccC-CcccC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAED-DAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFG-ASAVP  290 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~-Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG-~ptvv  290 (337)
                      +..++|+||||.++++.|.+- .++..+.. -.++....++.++||||+|.+.+.+..|+  ++..|+ -.+.|
T Consensus        15 ~~~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~~~~~~i~gR~i~V   88 (104)
T d1wg5a_          15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI   88 (104)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHhhCCCEEcceEEEE
Confidence            334889999999999987761 11111110 01111125678899999999977766554  455554 35544

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.00075  Score=49.70  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=40.4

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMFG  285 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~fG  285 (337)
                      .|+|+|||+.++++.+.+- .....+ .+.++..  ..++.++||||+|.+.+.+..|+   ++..++
T Consensus        11 ~l~v~nLp~~~~~~di~~~F~~~~~~-~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~   77 (86)
T d2cqpa1          11 IIKVQNMPFTVSIDEILDFFYGYQVI-PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG   77 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCCC-TTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcccc-eeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEEC
Confidence            4899999999999987772 111111 2222222  36788999999999977766664   444443

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0013  Score=49.36  Aligned_cols=65  Identities=9%  Similarity=-0.029  Sum_probs=42.5

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe----cCCcccchhhhhhhHhhHHHHh---hhhccC-CcccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH----IGQSFRFSAIEARREEQIKAAH---DEAMFG-ASAVPP  291 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q----Inqsk~fA~vEFKseetvalA~---Dgi~fG-~ptvv~  291 (337)
                      ...|||||||+.++++.|.+. ..+-     +|..|.    .+..++||||+|.+.+.+..|+   ++..|+ .++.|.
T Consensus        11 ~~~l~v~nLp~~~t~~~L~~~F~~~G-----~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~   84 (93)
T d2cq3a1          11 PKRLHVSNIPFRFRDPDLRQMFGQFG-----KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN   84 (93)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHGGGTS-----CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHhhcc-----eeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            345999999999998876662 1111     233333    3456889999999977776664   455554 444443

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.00098  Score=50.72  Aligned_cols=70  Identities=9%  Similarity=-0.024  Sum_probs=41.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeE-EecCCcccchhhhhhhHhhHHHH--hhhhcc-CCcccCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALV-KHIGQSFRFSAIEARREEQIKAA--HDEAMF-GASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~-~qInqsk~fA~vEFKseetvalA--~Dgi~f-G~ptvv~~  292 (337)
                      ..|||+|||+.++++.|.+. ..+..+....+.. ....+.++||||+|.+.+.+..|  +++..| |-++.|..
T Consensus        16 ~~v~V~nLp~~~te~~l~~~f~~~g~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~~~~~~~~~gr~l~V~~   90 (104)
T d1wi8a_          16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV   90 (104)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhccccceeeeeeccCCCcceeeeEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence            45899999999999987762 1221110000100 12456788999999996555443  455554 44665543

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.00057  Score=50.16  Aligned_cols=59  Identities=8%  Similarity=-0.088  Sum_probs=39.6

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEe------cCCcccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH------IGQSFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q------Inqsk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ..|||+|||+.++++.|.+. ...-     +|..|.      .++.++||||+|.+.+.+..|+   ++..|++
T Consensus        10 ~~l~V~nL~~~~te~~l~~~F~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g   78 (83)
T d2cqca1          10 CCLGVFGLSLYTTERDLREVFSKYG-----PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG   78 (83)
T ss_dssp             GCEEEESCCSSCCHHHHHHHHHTTS-----CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHhC-----CCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECC
Confidence            46999999999999886662 1111     222222      4677889999999977665554   4555543

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0025  Score=47.30  Aligned_cols=66  Identities=8%  Similarity=-0.054  Sum_probs=45.1

Q ss_pred             ccccCCcccccccccCCccch-hhhhhccCCceeEEe-cCCcccchhhhhhhHhhHHHHhh--hhccCCcccCCC
Q 019677          222 DETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKH-IGQSFRFSAIEARREEQIKAAHD--EAMFGASAVPPS  292 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~q-Inqsk~fA~vEFKseetvalA~D--gi~fG~ptvv~~  292 (337)
                      ...|||||||+.++++.|.+. ...    + +|+.|. +...++||||+|.+.+.+..|+.  ..+.|.++.|..
T Consensus         5 s~~lfV~nLp~~~te~~L~~~F~~~----G-~v~~v~~~~~~~gfafV~f~~~~~a~~a~~~~~~i~g~~l~v~~   74 (88)
T d1wf0a_           5 SSGVFVGRCTGDMTEDELREFFSQY----G-DVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISN   74 (88)
T ss_dssp             CCEEEEESCCSSSCHHHHHHHSTTT----S-CCCEEECCSSCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEEC
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHc----C-CceEEEEeeccCceEEEEECCHHHHHHHHhCCCEECCEEeEEEe
Confidence            346899999999998876652 111    1 334444 45678999999999887777764  334666666654

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.0011  Score=48.19  Aligned_cols=67  Identities=15%  Similarity=0.067  Sum_probs=38.2

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCce-eEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAA-LVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVP  290 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpv-l~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv  290 (337)
                      .|||+|||+.++++.+.+. ...-.+...-+ ...+.+..++||||+|.+.+....|+   ++..| |-++.|
T Consensus         3 tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V   75 (81)
T d2ghpa1           3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT   75 (81)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred             EEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence            5899999999999987772 12211111111 11236788999999999976665554   45554 445444

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0025  Score=47.04  Aligned_cols=54  Identities=9%  Similarity=-0.098  Sum_probs=36.6

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCce-eEEecCCcccchhhhhhhHhhHHHHh
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAA-LVKHIGQSFRFSAIEARREEQIKAAH  279 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpv-l~~qInqsk~fA~vEFKseetvalA~  279 (337)
                      ..|||||||+.++++.+.+.-  ... +..+ +.......++||||+|.+.+.+..|+
T Consensus        11 ~tL~V~NLp~~~te~~l~~~F--~~~-G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~   65 (88)
T d2adca2          11 ATLHLSNIPPSVSEEDLKVLF--SSN-GGVVKGFKFFQKDRKMALIQMGSVEEAVQAL   65 (88)
T ss_dssp             SEEEEECCCTTCCHHHHHHHH--HTT-SCCEEEEEECSSSTTCEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHh--hcc-CCEEEEEEeeecccceeEEEECCHHHHHHHH
Confidence            459999999999998866521  110 1111 22345678999999999977766665

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.0017  Score=48.31  Aligned_cols=65  Identities=14%  Similarity=-0.063  Sum_probs=43.7

Q ss_pred             cccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||||||+.++++.|.+..  ..  --+|..+.+..+++||||+|.+.+.+..|+   ++.. .|.++.|.
T Consensus         9 ~~l~V~nLp~~~~~~~l~~~F--~~--~G~i~~i~~~~~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~   77 (86)
T d2cpja1           9 SRLFVGNLPPDITEEEMRKLF--EK--YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR   77 (86)
T ss_dssp             TEEEEESCCTTCCHHHHHHHT--ST--TCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHH--HH--hCCceEeeeecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            459999999999988765521  11  124667777788999999999966655553   4555 44444433

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=94.97  E-value=0.00079  Score=50.87  Aligned_cols=64  Identities=20%  Similarity=0.078  Sum_probs=42.9

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCcee-EEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAAL-VKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl-~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~  291 (337)
                      ..|||||||+.++++.|.+. ..+-     ++. ....+.+++||||+|.+.+.+..|+   ++.. .|-++.|.
T Consensus        17 ~~l~V~nL~~~~te~~l~~~F~~~g-----~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~   86 (96)
T d1fjca_          17 RTLLAKNLSFNITEDELKEVFEDAL-----EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY   86 (96)
T ss_dssp             GEEEEESCCSSCCHHHHHHHHCSEE-----EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcc-----cceeeeecCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEE
Confidence            56999999999999876662 1111     122 2346788999999999977766664   4444 45555554

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0034  Score=48.16  Aligned_cols=53  Identities=6%  Similarity=-0.211  Sum_probs=36.8

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEEec--CCcccchhhhhhhHhhHHHHhh
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVKHI--GQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~qI--nqsk~fA~vEFKseetvalA~D  280 (337)
                      ..|+|+|||+.++++.|.+.- ..    | +|..|.|  ...++||||+|.+.+.+..|++
T Consensus         8 ~~v~V~NL~~~vte~~L~~~F~~~----G-~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~   63 (108)
T d2adba1           8 LRIIVENLFYPVTLDVLHQIFSKF----G-TVLKIITFTKNNQFQALLQYADPVSAQHAKL   63 (108)
T ss_dssp             EEEESCSCCSTTHHHHHHHHHTTT----S-CEEEEEEEEETTEEEEEEEESCHHHHHHHHH
T ss_pred             EEEEEeCcCCCCCHHHHHHHHccC----C-cEEEEEEEeeCCCCeEEEEECCHHHHHHHHH
Confidence            357899999999998766621 11    1 2333333  3567899999999888777754

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0032  Score=47.22  Aligned_cols=66  Identities=12%  Similarity=0.065  Sum_probs=41.9

Q ss_pred             ccCCcccccccccCCccch-hhh-hhccCCceeEE----ecCCcccchhhhhhhHhhHHHHhhh-----hcc-CCcccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVK----HIGQSFRFSAIEARREEQIKAAHDE-----AMF-GASAVPP  291 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~----qInqsk~fA~vEFKseetvalA~Dg-----i~f-G~ptvv~  291 (337)
                      .|||||||+.++++.|.+. ... ..+.  .|...    ..+.+++||||+|.+.+.+..|+..     +.+ |-++.|.
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~--~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~   80 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVL--DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD   80 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEE--EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcce--EEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEE
Confidence            5899999999999887662 111 1010  11111    1356888999999998888877642     333 4456554

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.001  Score=49.64  Aligned_cols=68  Identities=16%  Similarity=-0.003  Sum_probs=41.8

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||+|||+.++++.|.+. ..+-.+. ...+..  ++++.++||||+|.+.+.+..|+   ++..| |.++.|.
T Consensus         9 ~~i~V~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~   83 (90)
T d2cq0a1           9 ATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE   83 (90)
T ss_dssp             EEEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHhcccc-cccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            35899999999999987662 1111000 111222  25678889999999976666554   45444 4455443

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.0017  Score=47.10  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=37.8

Q ss_pred             ccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhccCC
Q 019677          224 TKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFGA  286 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG~  286 (337)
                      .++|+|+|+.++++.|.+- ...-.+. +.-+...-+..++||||+|.+++.+..|+  ++..|++
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~-~v~~~~~~~~~~~~afV~F~~~~~a~~Al~~~~~~i~g   66 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPII-HVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQ   66 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEE-EEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceE-EEEEEeeccccceEEEEEEcchHHhHHHHHhcCcEECC
Confidence            3689999999999887662 1111010 11112223456679999999977765554  5556554

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0035  Score=47.71  Aligned_cols=66  Identities=12%  Similarity=-0.066  Sum_probs=43.8

Q ss_pred             cccccCCcccccc-cccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh-----hhc-cCCcccCC
Q 019677          221 KDETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD-----EAM-FGASAVPP  291 (337)
Q Consensus       221 adr~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D-----gi~-fG~ptvv~  291 (337)
                      ....|||+|||.. ++++.|.+.- ..    | +|..+.+..++++|||+|.+.+.+..|++     ++. .|-++-|.
T Consensus        17 ~~~~l~v~nLp~~~~te~~l~~~F~~f----G-~V~~v~~~~~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~   90 (99)
T d1x4fa1          17 LGRVIHLSNLPHSGYSDSAVLKLAEPY----G-KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD   90 (99)
T ss_dssp             CCCEEEEESCCCSSCCSHHHHTTTTTT----S-CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred             CCCEEEEeCCcCCccCHHHHHhhhccc----c-ceeEEEEeecCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEE
Confidence            3456999999985 7777655521 11    1 46666777889999999999777665543     444 44455544

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0026  Score=47.75  Aligned_cols=68  Identities=13%  Similarity=-0.106  Sum_probs=42.9

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~  292 (337)
                      ..|||+|||+.++++.|.+. ...-.+  .-+........++||||+|.+.+.+..|+   ++.. .|.++.|.-
T Consensus        15 ~~l~V~nLp~~~t~~~l~~~F~~~G~v--~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~   87 (95)
T d1x4aa1          15 CRIYVGNLPPDIRTKDIEDVFYKYGAI--RDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF   87 (95)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHGGGSCE--EEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHhcCCce--EEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence            45999999999999887662 111100  01222223567899999999977766554   5555 455665543

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.0021  Score=47.60  Aligned_cols=64  Identities=6%  Similarity=-0.062  Sum_probs=37.5

Q ss_pred             ccccCCcccccccccCC-ccch-hhhhhccCCceeEE-------ecCCcccchhhhhhhHhhHHHHh--hhhccCC-ccc
Q 019677          222 DETKGSGWERFEFDKDA-PLDD-EEIEAAEDDAALVK-------HIGQSFRFSAIEARREEQIKAAH--DEAMFGA-SAV  289 (337)
Q Consensus       222 dr~L~VGnipf~~tEea-lldN-~~Leaie~Dpvl~~-------qInqsk~fA~vEFKseetvalA~--Dgi~fG~-ptv  289 (337)
                      .+.|||+|||+.++.+. |.+. ...-     +|..|       +.++.++||||+|.+.+.+..|+  ++..|++ ++.
T Consensus         4 ~~~l~V~nLp~~~t~ed~l~~~F~~~G-----~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~~n~~~~~gr~l~   78 (86)
T d2ghpa3           4 GREIMIRNLSTELLDENLLRESFEGFG-----SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREIS   78 (86)
T ss_dssp             TTEEEEEEECTTTCCHHHHHHHHGGGS-----CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEE
T ss_pred             CCEEEEECCCCCcccHHHHHHHHHhhh-----hccceeeecccCCccccceeeeEEECCHHHHHHHHhcCCCEECCEEEE
Confidence            35689999999987554 3331 1111     12222       35577889999999977766664  4555443 443


Q ss_pred             C
Q 019677          290 P  290 (337)
Q Consensus       290 v  290 (337)
                      |
T Consensus        79 V   79 (86)
T d2ghpa3          79 V   79 (86)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.03  E-value=0.004  Score=47.41  Aligned_cols=63  Identities=13%  Similarity=0.015  Sum_probs=41.6

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhcc-CCcc
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAMF-GASA  288 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~f-G~pt  288 (337)
                      ....|+|+|||+.++++.|.+.  +..  --.|..|.|. .++||||+|.+.+.+..|+   ++..| |..+
T Consensus        14 ~~~~i~V~Nlp~~~~~~~L~~~--F~~--~G~v~~~~i~-~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i   80 (98)
T d1wg4a_          14 SDFRVLVSGLPPSGSWQDLKDH--MRE--AGDVCYADVQ-KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEG   80 (98)
T ss_dssp             CSCEEEEECCCSSCCHHHHHHH--HTT--SSCEEEEEEE-TTTEEEEEESSHHHHHHHHHHHSSEEEECTTS
T ss_pred             CCCEEEEECCCCCCCHHHHHHH--HHh--hccccccccc-ccceEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence            3456999999999998875551  111  1135566664 4689999999977766664   45555 4444

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.0049  Score=45.81  Aligned_cols=67  Identities=10%  Similarity=-0.109  Sum_probs=42.9

Q ss_pred             cccCCcccccccccCCccch-hhh-hhccCCceeEEec---CCcccchhhhhhhHhhHHHHh---hhhcc-CCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEI-EAAEDDAALVKHI---GQSFRFSAIEARREEQIKAAH---DEAMF-GASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~L-eaie~Dpvl~~qI---nqsk~fA~vEFKseetvalA~---Dgi~f-G~ptvv~  291 (337)
                      ..|||||||+.++++.+.+. ..+ ... | +|+.|.+   ++.++||||+|.+.+.+..|+   .+..| |.++.|.
T Consensus         4 ~tl~V~nLp~~~t~~dl~~~l~~~f~~~-G-~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~   79 (91)
T d1nu4a_           4 HTIYINNLNEKIKKDELKKSLHAIFSRF-G-QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ   79 (91)
T ss_dssp             SEEEEESCCTTSCHHHHHHHHHHHHGGG-S-CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhccc-c-cccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence            56999999999998876551 111 111 1 3444544   456899999999977665554   45544 4455554

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.0059  Score=47.48  Aligned_cols=43  Identities=9%  Similarity=-0.197  Sum_probs=34.1

Q ss_pred             cCCcccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhH
Q 019677          225 KGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARRE  272 (337)
Q Consensus       225 L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKse  272 (337)
                      +||||+|+.++++.|.+. ..+     =+|..|.|...++||||.|.+.
T Consensus        14 ~fvgnL~~~~tee~Lk~~F~~f-----G~V~~v~i~~~kg~gfV~F~~~   57 (113)
T d1owxa_          14 KFSGDLDDQTCREDLHILFSNH-----GEIKWIDFVRGAKEGIILFKEK   57 (113)
T ss_dssp             EEEESCCSSCCHHHHHHHTCSS-----CCEEEEECCTTCSEEEEEESSC
T ss_pred             EEECCCCCCCCHHHHHHHHHhc-----CChheEEEecCCceEEEEecCc
Confidence            479999999999987662 122     2578888999999999999885

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.0056  Score=45.51  Aligned_cols=61  Identities=15%  Similarity=-0.006  Sum_probs=42.8

Q ss_pred             ccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh--hhhccCCccc
Q 019677          224 TKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH--DEAMFGASAV  289 (337)
Q Consensus       224 ~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~--Dgi~fG~ptv  289 (337)
                      -++|+.+|+..+++ ++.  -+...  =+++.+.++..++|+||+|.+.+.+..|+  +|..|++.++
T Consensus         6 wV~V~G~p~~~~~~-il~--~F~~~--G~I~~~~~~~~~~~~fV~f~~~~~A~~Al~~nG~~~~g~~~   68 (81)
T d1wwha1           6 WVTVFGFPQASASY-ILL--QFAQY--GNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIM   68 (81)
T ss_dssp             EEEEECCCGGGHHH-HHH--HHHTT--SCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTEE
T ss_pred             EEEEECCChHHHHH-HHH--HHHhh--hhhheEEecCCCCEEEEEEcccHHHHHHHhcCCCeECCcEE
Confidence            35688888877643 444  12211  14778889999999999999977766665  5888887653

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.014  Score=44.14  Aligned_cols=65  Identities=8%  Similarity=-0.174  Sum_probs=41.8

Q ss_pred             cccCCcccccc-cccCCccchh-hhhhccCCceeEEecC-CcccchhhhhhhHhhHHHHhh---hhc-cCCcccCCC
Q 019677          223 ETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHIG-QSFRFSAIEARREEQIKAAHD---EAM-FGASAVPPS  292 (337)
Q Consensus       223 r~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qIn-qsk~fA~vEFKseetvalA~D---gi~-fG~ptvv~~  292 (337)
                      ..|+|+||++. ++++.|.+.. ..-     +|..|.|- ..++||||+|.+.+.+..|++   +.. .|.++.|.-
T Consensus         3 ~~l~V~nL~p~~~te~~L~~~F~~fG-----~I~~v~i~~~~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~   74 (109)
T d2adca1           3 SVLLVSNLNPERVTPQSLFILFGVYG-----DVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL   74 (109)
T ss_dssp             SEEEEESCCTTTCCHHHHHHHHHHHT-----CEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred             CEEEEeCCCcccCCHHHHHHHHhhcc-----ccceEEEEecccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence            35899999764 7777766621 111     35555543 346799999999877776654   444 556665553

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.0068  Score=46.75  Aligned_cols=66  Identities=11%  Similarity=-0.052  Sum_probs=43.9

Q ss_pred             cccCCccccccc-ccCCccc-hhh-hhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh---hhc-cCCcccC
Q 019677          223 ETKGSGWERFEF-DKDAPLD-DEE-IEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD---EAM-FGASAVP  290 (337)
Q Consensus       223 r~L~VGnipf~~-tEealld-N~~-Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D---gi~-fG~ptvv  290 (337)
                      ..|||+||...+ +++.+.+ ... +.  .--+|+.+++.+++++|||+|.+.+....|+.   +.. .|-++.|
T Consensus         6 ~~L~v~nl~~~v~~~d~~k~~l~~lF~--~~G~i~~~~~~k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v   78 (104)
T d1weya_           6 SGLIACVANDDVFSESETRAKFESLFR--TYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL   78 (104)
T ss_dssp             CEEEEECCCGGGGSTTTHHHHHHHHHH--TTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred             ceEEEEeCCchhcCcHHHHHHHHHHhc--ccccceEEEEecCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEE
Confidence            459999999987 4444333 111 11  12456778888999999999999777666654   544 4555544

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.25  E-value=0.0075  Score=44.01  Aligned_cols=57  Identities=11%  Similarity=-0.140  Sum_probs=39.5

Q ss_pred             cccCCcccccccccCCccch-hhhhhccCCceeEEec-CCcccchhhhhhhHhhHHHHh---hhhcc
Q 019677          223 ETKGSGWERFEFDKDAPLDD-EEIEAAEDDAALVKHI-GQSFRFSAIEARREEQIKAAH---DEAMF  284 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN-~~Leaie~Dpvl~~qI-nqsk~fA~vEFKseetvalA~---Dgi~f  284 (337)
                      ..|+|+|||+.++++.|.+. ...     -+|..+.+ ...++||||+|.+.+.+..|+   ++..|
T Consensus         9 ~tl~V~nLp~~~t~~~l~~~f~~~-----G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~   70 (83)
T d2b0ga1           9 QILFLTNLPEETNEMMLSMLFNQF-----PGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKI   70 (83)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHTTS-----TTEEEEEECTTTCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred             CEEEEECCCCCCCHHHHHhhhccC-----ccEEEeeeecccceeEEEecCCHHHHHHHHHHhCCcEe
Confidence            46899999999988876552 111     14566654 345689999999977776664   45444

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.17  E-value=0.0078  Score=44.92  Aligned_cols=67  Identities=16%  Similarity=-0.049  Sum_probs=46.4

Q ss_pred             cccccCCcccccc-cccCCccchh-hhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh-----hhc-cCCcccCCC
Q 019677          221 KDETKGSGWERFE-FDKDAPLDDE-EIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD-----EAM-FGASAVPPS  292 (337)
Q Consensus       221 adr~L~VGnipf~-~tEealldN~-~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D-----gi~-fG~ptvv~~  292 (337)
                      ..+.+||+|+|.+ ++++.|++.. .+-     .|..+.+..++++|||+|.+.+....|++     ++. .|-|+.|.-
T Consensus         7 ~sr~v~v~nl~~~~~t~~eL~~lF~~fG-----~I~~i~i~~~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~   81 (89)
T d1x4da1           7 TRRVVHIMDFQRGKNLRYQLLQLVEPFG-----VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL   81 (89)
T ss_dssp             CCCEEEEESCCCSSSHHHHHHTTTGGGS-----CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred             CCcEEEEECCCCCcCCHHHHHHHHHhhC-----CeEEEEeeccceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEE
Confidence            3456899999987 5677766632 221     36677788899999999999777766654     333 455666653

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=0.011  Score=43.80  Aligned_cols=63  Identities=10%  Similarity=-0.090  Sum_probs=38.1

Q ss_pred             ccccCCcccccccccCCccchhh-hhhccCCceeEEec------CC---cccchhhhhhhHhhHHHHh---hhhccCC
Q 019677          222 DETKGSGWERFEFDKDAPLDDEE-IEAAEDDAALVKHI------GQ---SFRFSAIEARREEQIKAAH---DEAMFGA  286 (337)
Q Consensus       222 dr~L~VGnipf~~tEealldN~~-Leaie~Dpvl~~qI------nq---sk~fA~vEFKseetvalA~---Dgi~fG~  286 (337)
                      ...+||||||+.++++.++...+ +...  -+|..|.|      +.   ..+||||+|.+.+.+..|+   ++..|++
T Consensus         8 ~n~vyV~nLp~~~t~~~l~~~~e~F~~~--G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~g   83 (89)
T d2cpia1           8 KNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG   83 (89)
T ss_dssp             SSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred             cCEEEEECCCCccCHHHHHHHHHHhccc--CCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECC
Confidence            34589999999999988743211 1100  12333322      22   3378999999977766554   5666554

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.01  Score=42.96  Aligned_cols=64  Identities=8%  Similarity=-0.088  Sum_probs=40.1

Q ss_pred             cccccCCcccccccccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHH---hhhhc-cCCcccC
Q 019677          221 KDETKGSGWERFEFDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAA---HDEAM-FGASAVP  290 (337)
Q Consensus       221 adr~L~VGnipf~~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA---~Dgi~-fG~ptvv  290 (337)
                      +...|||+|++  ++++.|.+.  +... | .|+.+.+...++||||+|.+.+.+..|   +++.. .|.++.|
T Consensus         4 ~~~ti~V~~~~--~te~~L~~~--F~~~-G-~I~~v~~~~~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V   71 (79)
T d2bz2a1           4 KGNTLYVYGED--MTPTLLRGA--FSPF-G-NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV   71 (79)
T ss_dssp             CCCEEEEECSS--CCHHHHHHH--HSTT-C-CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred             CCCEEEEECCC--CCHHHHHHH--Hhcc-C-ccceeeeccCCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEE
Confidence            34568999975  565554441  1111 1 356677888999999999997766555   45555 4445444

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.015  Score=44.11  Aligned_cols=65  Identities=14%  Similarity=-0.039  Sum_probs=39.6

Q ss_pred             cccCCcccccc-cccCCccchhhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHh---hhhc-cCCcccCCCC
Q 019677          223 ETKGSGWERFE-FDKDAPLDDEEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAH---DEAM-FGASAVPPSV  293 (337)
Q Consensus       223 r~L~VGnipf~-~tEealldN~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~---Dgi~-fG~ptvv~~t  293 (337)
                      ..||||||++. ++++.|.+.  +.  .-=+|+.+.|  .++||||+|.+.+.+..|+   ++.. .|.++.|...
T Consensus        16 ~~lfV~nL~~~~~~~~~L~~~--F~--~~G~i~~~~i--~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a   85 (98)
T d1wf2a_          16 SRVFIGNLNTLVVKKSDVEAI--FS--KYGKIVGCSV--HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLA   85 (98)
T ss_dssp             CCEEEEEECTTTCCHHHHHHS--ST--TSSCEEEEEE--ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEET
T ss_pred             cEEEEeCCCcccCCHHHHHHH--Hh--hcCCEEEEEE--eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            45999999754 444433221  01  1124666666  5799999999977776664   4544 5556666543

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.75  E-value=0.027  Score=42.94  Aligned_cols=54  Identities=15%  Similarity=-0.018  Sum_probs=39.4

Q ss_pred             ccccCC--cccccccccCCccch-hhhhhccCCceeEEecCCcccchhhhhhhHhhHHHHhh
Q 019677          222 DETKGS--GWERFEFDKDAPLDD-EEIEAAEDDAALVKHIGQSFRFSAIEARREEQIKAAHD  280 (337)
Q Consensus       222 dr~L~V--Gnipf~~tEealldN-~~Leaie~Dpvl~~qInqsk~fA~vEFKseetvalA~D  280 (337)
                      ...|+|  |+||+.++++.|.+. ...-     ++..+.+..+++||||+|.+.+....|+.
T Consensus        18 t~~l~V~ng~L~~~vte~~L~~~F~~~G-----~i~~i~~~~~k~~aFV~f~~~e~A~~A~~   74 (101)
T d2cq2a1          18 TQSLVVANGGLGNGVSRNQLLPVLEKCG-----LVDALLMPPNKPYSFARYRTTEESKRAYV   74 (101)
T ss_dssp             CSEEEEETCTGGGTCCHHHHHHHHHHHS-----CEEEEECCTTCSCEEEEESSHHHHHHHHH
T ss_pred             CceEEEECCCCCCCCCHHHHHHHHHhhC-----cccEEeeccCccEEEEEECCHHHHHHHHH
Confidence            345666  569999999987662 1221     45666788899999999999887777764

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.011  Score=47.89  Aligned_cols=68  Identities=9%  Similarity=0.009  Sum_probs=42.8

Q ss_pred             cccCCcccccccccCCccchh-hhhhccCCceeEE--ecCCcccchhhhhhhHhhHHHHhh---hhccCCcccCC
Q 019677          223 ETKGSGWERFEFDKDAPLDDE-EIEAAEDDAALVK--HIGQSFRFSAIEARREEQIKAAHD---EAMFGASAVPP  291 (337)
Q Consensus       223 r~L~VGnipf~~tEealldN~-~Leaie~Dpvl~~--qInqsk~fA~vEFKseetvalA~D---gi~fG~ptvv~  291 (337)
                      ..|+|+|||+.++++.|.+.. ..-.+. +..+..  ..+..++||||+|.+.+.+..|+.   ..+.|.++.|.
T Consensus        98 ~~i~V~~lp~~~te~~L~~~f~~~G~v~-~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~~~~~~~~G~~i~V~  171 (183)
T d1u1qa_          98 KKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR  171 (183)
T ss_dssp             SEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHTSSCEEETTEEEEEE
T ss_pred             ceeEEccCCCcCCHHHHhhhhccCCcee-eeeeecccccCccceeEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence            458999999999988776621 110000 111111  246788999999999887777763   34456666554