Citrus Sinensis ID: 019681

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV
cEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
cEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHcccEEccEEEEEEEcccccc
miafishtknkpkkrkrKRKRKRLLSRCACGFAVLSVFSVSLQIIVtgfpmakdtgvaehgsysakdytdpppeplfdaveLTKWSFYRALIAEFIATLLFLYVTVLTVIGyksqtdpaknvdgcagVGILGIAWAFGGMIFVLVYCTagisgghinpaVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYytryggganeladgystGVGLAAEIIGTFVLVYTVFsatdpkrsardshvpvlaplpiGFAVFMVHLAtipitgtginparslGAAVIYnkdkawddqwlfWVGPFIGAAIAAFYHQFILRAGAVKALgsfrsqsrv
miafishtknkpkkrkrkrkrkrllsrcacgfaVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKsqtdpaknvDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV
MIAFISHTknkpkkrkrkrkrkrLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAtllflyvtvltvIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV
***********************LLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVA****************PLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATD*******SHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG********
**AF********************LSRCACGFAVLSVFSVSLQIIV*****************************LFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR****************
************************LSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV
MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGF****************KDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTD***NVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRS****
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIAFISHTKNKPKKRKRKRKRKRLLSRCACGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9SV31286 Probable aquaporin PIP2-5 yes no 0.848 1.0 0.850 1e-141
Q9ATM6288 Aquaporin PIP2-4 OS=Zea m N/A no 0.842 0.986 0.826 1e-134
Q9ATM7289 Aquaporin PIP2-3 OS=Zea m N/A no 0.818 0.955 0.842 1e-134
Q6K215288 Probable aquaporin PIP2-2 yes no 0.842 0.986 0.809 1e-134
P43287285 Aquaporin PIP2-2 OS=Arabi no no 0.845 1.0 0.815 1e-134
P43286287 Aquaporin PIP2-1 OS=Arabi no no 0.851 1.0 0.804 1e-133
Q9FF53291 Probable aquaporin PIP2-4 no no 0.839 0.972 0.819 1e-133
P30302285 Aquaporin PIP2-3 OS=Arabi no no 0.845 1.0 0.804 1e-131
Q9ZV07289 Probable aquaporin PIP2-6 no no 0.839 0.979 0.802 1e-131
Q84RL7290 Aquaporin PIP2-1 OS=Zea m N/A no 0.845 0.982 0.803 1e-131
>sp|Q9SV31|PIP25_ARATH Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1 Back     alignment and function desciption
 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/287 (85%), Positives = 261/287 (90%), Gaps = 1/287 (0%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           M K+  V +  S+S KDY DPPPEPLFDA EL KWSFYRALIAEFIATLLFLYVT++TVI
Sbjct: 1   MTKEV-VGDKRSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVI 59

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           GYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV
Sbjct: 60  GYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKV 119

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           +LVRAVMYMVAQCLGAI GV LVKAFQ +Y+TRYGGGAN L+DGYS G G+AAEIIGTFV
Sbjct: 120 TLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFV 179

Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
           LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN
Sbjct: 180 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYN 239

Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV 337
           KDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALGSFRSQ  V
Sbjct: 240 KDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRSQPHV 286
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ATM6|PIP24_MAIZE Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9ATM7|PIP23_MAIZE Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q6K215|PIP22_ORYSJ Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|P43287|PIP22_ARATH Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2 Back     alignment and function description
>sp|P43286|PIP21_ARATH Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF53|PIP24_ARATH Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1 Back     alignment and function description
>sp|P30302|PIP23_ARATH Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZV07|PIP26_ARATH Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1 Back     alignment and function description
>sp|Q84RL7|PIP21_MAIZE Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
373501939287 plasma membrane intrinsic protein [Malus 0.851 1.0 0.909 1e-149
13486942287 plasma membrane intrinsic protein 2-2 [P 0.851 1.0 0.909 1e-148
300119934285 aquaporin [Fragaria x ananassa] 0.845 1.0 0.905 1e-146
444300796287 aquaporin protein 4 [Camellia sinensis] 0.851 1.0 0.878 1e-144
224113031285 aquaporin, MIP family, PIP subfamily [Po 0.842 0.996 0.891 1e-143
383479030285 aquaporin PIP2;2 [Quercus petraea] 0.845 1.0 0.873 1e-143
8071620284 putative aquaporin PIP2-1 [Vitis cinerea 0.842 1.0 0.874 1e-142
225449054284 PREDICTED: probable aquaporin PIP2-5 [Vi 0.842 1.0 0.874 1e-142
444300798285 aquaporin protein 5 [Camellia sinensis] 0.845 1.0 0.863 1e-142
111379078284 putative aquaporin [Vitis vinifera] 0.842 1.0 0.874 1e-142
>gi|373501939|gb|AEY75242.1| plasma membrane intrinsic protein [Malus hupehensis] Back     alignment and taxonomy information
 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/287 (90%), Positives = 268/287 (93%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           MAKD  V E GS+SAKDY DPPP PL DA ELTKWSFYRALIAEF+ATLLFLYVTVLTVI
Sbjct: 1   MAKDMEVGERGSFSAKDYQDPPPAPLIDAAELTKWSFYRALIAEFVATLLFLYVTVLTVI 60

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           GYKSQTDPA N D C GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61  GYKSQTDPATNADACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 120

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           SLVRAVMYMVAQ LGAI+GV LVKAFQKSYY +YGGGAN L+DGYSTGVGLAAEIIGTFV
Sbjct: 121 SLVRAVMYMVAQSLGAIAGVALVKAFQKSYYIKYGGGANSLSDGYSTGVGLAAEIIGTFV 180

Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
           LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARSLGAAVIYN
Sbjct: 181 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAVIYN 240

Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV 337
           KDKAWDDQW+FWVGPFIGAAIAAFYHQFILRAGAVKALGSFRS   V
Sbjct: 241 KDKAWDDQWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 287

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|13486942|dbj|BAB40143.1| plasma membrane intrinsic protein 2-2 [Pyrus communis] Back     alignment and taxonomy information
>gi|300119934|gb|ADJ67992.1| aquaporin [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|444300796|gb|AGD98707.1| aquaporin protein 4 [Camellia sinensis] Back     alignment and taxonomy information
>gi|224113031|ref|XP_002316367.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118480985|gb|ABK92446.1| unknown [Populus trichocarpa] gi|222865407|gb|EEF02538.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|383479030|gb|AFH36337.1| aquaporin PIP2;2 [Quercus petraea] Back     alignment and taxonomy information
>gi|8071620|gb|AAF71816.1|AF141642_1 putative aquaporin PIP2-1 [Vitis cinerea var. helleri x Vitis rupestris] Back     alignment and taxonomy information
>gi|225449054|ref|XP_002274555.1| PREDICTED: probable aquaporin PIP2-5 [Vitis vinifera] gi|55982653|gb|AAV69744.1| aquaporin [Vitis vinifera] Back     alignment and taxonomy information
>gi|444300798|gb|AGD98708.1| aquaporin protein 5 [Camellia sinensis] Back     alignment and taxonomy information
>gi|111379078|gb|ABH09326.1| putative aquaporin [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.848 1.0 0.815 7e-125
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.842 0.996 0.784 2.6e-118
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.848 0.996 0.774 5.4e-118
TAIR|locus:2175831291 PIP2;4 "plasma membrane intrin 0.836 0.969 0.792 1.4e-117
TAIR|locus:2061763285 RD28 "RESPONSIVE TO DESICCATIO 0.842 0.996 0.770 3.4e-116
TAIR|locus:2064885289 PIP2E "plasma membrane intrins 0.839 0.979 0.760 1.3e-114
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.813 0.985 0.759 1.1e-110
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.821 0.989 0.748 1.1e-110
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.789 0.926 0.693 5.8e-98
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.786 0.926 0.693 2e-97
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 234/287 (81%), Positives = 249/287 (86%)

Query:    51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
             M K+  V +  S+S KDY DPPPEPLFDA EL KWSFYRALIAEFIA            I
Sbjct:     1 MTKEV-VGDKRSFSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVI 59

Query:   111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
             GYKSQTDPA N D C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKV
Sbjct:    60 GYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKV 119

Query:   171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
             +LVRAVMYMVAQCLGAI GV LVKAFQ +Y+TRYGGGAN L+DGYS G G+AAEIIGTFV
Sbjct:   120 TLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFV 179

Query:   231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
             LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN
Sbjct:   180 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYN 239

Query:   291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV 337
             KDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALGSFRSQ  V
Sbjct:   240 KDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRSQPHV 286
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0006833 "water transport" evidence=RCA;IMP
GO:0006826 "iron ion transport" evidence=RCA
GO:0010106 "cellular response to iron ion starvation" evidence=RCA
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175831 PIP2;4 "plasma membrane intrinsic protein 2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061763 RD28 "RESPONSIVE TO DESICCATION 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064885 PIP2E "plasma membrane intrinsic protein 2E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GRI8PIP25_ORYSJNo assigned EC number0.77350.83380.9929nono
P93004PIP27_ARATHNo assigned EC number0.78670.82190.9892nono
P43287PIP22_ARATHNo assigned EC number0.81530.84561.0nono
P43286PIP21_ARATHNo assigned EC number0.80480.85161.0nono
Q84RL7PIP21_MAIZENo assigned EC number0.80340.84560.9827N/Ano
Q8H5N9PIP21_ORYSJNo assigned EC number0.81580.81600.9482nono
P30302PIP23_ARATHNo assigned EC number0.80480.84561.0nono
Q9AQU5PIP13_MAIZENo assigned EC number0.73150.74480.8595N/Ano
Q8GRT8PIP24_ORYSJNo assigned EC number0.79090.84270.9930nono
Q9AR14PIP15_MAIZENo assigned EC number0.70740.78040.9131N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.78160.83380.9756N/Ano
Q08451PIP1_SOLLCNo assigned EC number0.73150.74480.8776N/Ano
P61838PIP11_VICFANo assigned EC number0.70800.78630.9265N/Ano
P42767PIP1_ATRCANo assigned EC number0.74640.81300.9716N/Ano
Q9ATN0PIP16_MAIZENo assigned EC number0.66310.81300.9256N/Ano
Q9ZV07PIP26_ARATHNo assigned EC number0.80280.83970.9792nono
Q6K215PIP22_ORYSJNo assigned EC number0.80960.84270.9861yesno
Q9SV31PIP25_ARATHNo assigned EC number0.85010.84861.0yesno
Q7XUA6PIP23_ORYSJNo assigned EC number0.82050.80110.9310nono
Q9XF58PIP25_MAIZENo assigned EC number0.79860.83970.9929N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.81970.83970.9725nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.79570.81600.9892nono
Q9ATM4PIP27_MAIZENo assigned EC number0.77770.84270.9895N/Ano
Q9ATM6PIP24_MAIZENo assigned EC number0.82690.84270.9861N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.84220.81890.9550N/Ano
Q9ATM8PIP22_MAIZENo assigned EC number0.80130.84560.9760N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-96
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 6e-77
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 5e-65
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 5e-45
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 3e-39
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-36
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-34
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-29
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 3e-22
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-19
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-18
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 8e-18
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 4e-16
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 0.001
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 0.001
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  283 bits (726), Expect = 6e-96
 Identities = 119/236 (50%), Positives = 148/236 (62%), Gaps = 18/236 (7%)

Query: 81  ELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGM 140
           EL   SF+RA+IAEF+ATLLF++  V + +G K               G+L +A AFG  
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKLYG-----------GLLAVALAFGLA 49

Query: 141 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY 200
           +F LVYCT  ISG H+NPAVTF L + R++SL+RA+ Y++AQ LGAI G  L+K      
Sbjct: 50  LFTLVYCTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNG- 108

Query: 201 YTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 260
             R GG AN LA G + G     EII TF LVYTVF+ TD  R+    HV   APL IGF
Sbjct: 109 LQRAGGFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGF 165

Query: 261 AVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 316
           AVF+ HLA  P TG  +NPARS G AV+  K   WDD W++WVGP IGAA+AA  +
Sbjct: 166 AVFLNHLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.55
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.54
PLN00026 298 aquaporin NIP; Provisional 99.54
PLN00183274 putative aquaporin NIP7; Provisional 99.51
PLN00184 296 aquaporin NIP1; Provisional 99.49
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.46
PLN00166 250 aquaporin TIP2; Provisional 99.45
PLN00167 256 aquaporin TIP5; Provisional 99.41
PLN00027 252 aquaporin TIP; Provisional 99.36
PRK05420 231 aquaporin Z; Provisional 99.32
PTZ00016 294 aquaglyceroporin; Provisional 99.3
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.26
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.01
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 98.94
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 98.89
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.12
PRK10805285 formate transporter; Provisional 90.38
PRK11562268 nitrite transporter NirC; Provisional 86.38
PRK09713282 focB putative formate transporter; Provisional 81.52
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-54  Score=398.41  Aligned_cols=233  Identities=52%  Similarity=0.820  Sum_probs=213.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchh
Q 019681           80 VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA  159 (337)
Q Consensus        80 ~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPA  159 (337)
                      .|..+++++|++++||++|++|+|++|+++..+...         +..++.+.+++++|+++++++|++++|||||+|||
T Consensus         3 ~~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~---------~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPA   73 (238)
T KOG0223|consen    3 GELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKY---------GGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPA   73 (238)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------CCCchhHHHHHHHHHHHHHHHhhhccccccccCHH
Confidence            455678999999999999999999999988866542         34567899999999999999999999999999999


Q ss_pred             hhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccccCCcccchhhHHHHHHHHHHHHHHHHH-h
Q 019681          160 VTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-A  238 (337)
Q Consensus       160 VTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~~~~g~s~~~~f~~E~i~TfvLv~~vl~-~  238 (337)
                      ||+++++.|++++.|+..|+++|++|+++|+++.+.+++.+++..+.+.+.+.++.+.+++++.|++.||+|+++++. +
T Consensus        74 VT~a~~~~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a  153 (238)
T KOG0223|consen   74 VTLAFAVGGKISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATA  153 (238)
T ss_pred             HHHHHHHhCCCcHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEe
Confidence            999999999999999999999999999999999999999876666677788899999999999999999999999998 8


Q ss_pred             ccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcCCCCCCCcceehhhhHHHHHHHHHHHHHH
Q 019681          239 TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF  318 (337)
Q Consensus       239 ~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~~~~~w~~~wvywvgP~iGa~laa~~~~~  318 (337)
                      +|+|++       .++|+.||+++.+.+++++++||++|||||+|||+++++   .|++|||||+||++|+++|+++|++
T Consensus       154 ~d~~~~-------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~  223 (238)
T KOG0223|consen  154 TDPRRS-------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRL  223 (238)
T ss_pred             ecCCCc-------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHH
Confidence            888876       479999999999999999999999999999999999987   4999999999999999999999999


Q ss_pred             HcccchhhhccCc
Q 019681          319 ILRAGAVKALGSF  331 (337)
Q Consensus       319 ~~~~~~~~~~~~~  331 (337)
                      ++.+++.+...+.
T Consensus       224 v~~~~~~~~~~~~  236 (238)
T KOG0223|consen  224 VFIPDESEPTKSA  236 (238)
T ss_pred             hccCccccccCcc
Confidence            9998855544433

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-115
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-115
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-114
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-114
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-114
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 8e-42
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-39
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 5e-34
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 5e-34
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 6e-34
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 6e-33
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-27
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-27
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 5e-27
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-26
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-26
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 3e-17
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 4e-17
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 5e-17
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 1e-16
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 1e-16
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 1e-16
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 9e-16
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-15
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-14
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-14
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 7e-11
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 7e-11
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-10
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 2e-05
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/284 (71%), Positives = 224/284 (78%), Gaps = 6/284 (2%)
Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXI 110
           M+K+           KDY DPPP P FD  EL  WSF+RA IAEFIA            I
Sbjct: 1   MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 60
Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           G+  +T        C  VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 61  GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 114
Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
           SL+RA++YM+AQCLGAI GVGLVKAF K  Y ++GGGAN +A GY+ G  L AEIIGTFV
Sbjct: 115 SLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 174
Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
           LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 175 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 234
Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
            +K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALGSFRS 
Sbjct: 235 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGSFRSN 278
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-144
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-113
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-106
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-105
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-104
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-103
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-103
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-103
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-100
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 1e-100
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 7e-80
2f2b_A 246 Aquaporin AQPM; protein, integral membrane protein 1e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-50
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 1e-48
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  408 bits (1050), Expect = e-144
 Identities = 210/284 (73%), Positives = 233/284 (82%), Gaps = 6/284 (2%)

Query: 51  MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVI 110
           M+K+           KDY DPPP P FD  EL  WSF+RA IAEFIATLLFLY+TV TVI
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 111 GYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 170
           G+  +T        C  VG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV
Sbjct: 84  GHSKETVV------CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 137

Query: 171 SLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFV 230
            L+RA++YM+AQCLGAI GVGLVKAF K  Y ++GGGAN +A GY+ G  L AEIIGTFV
Sbjct: 138 ELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFV 197

Query: 231 LVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN 290
           LVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+N
Sbjct: 198 LVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN 257

Query: 291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQ 334
            +K WDDQW+FWVGPFIGAA+AA YHQ++LRA A+KALG FRS 
Sbjct: 258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSN 301
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.53
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.41
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.22
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.22
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.18
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.16
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.16
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.16
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.14
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.13
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.12
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.06
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.03
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 88.84
3kly_A280 Putative formate transporter 1; membrane protein, 83.56
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=1.1e-65  Score=490.20  Aligned_cols=281  Identities=75%  Similarity=1.253  Sum_probs=217.2

Q ss_pred             cccccccccCCCCCCcCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcch
Q 019681           51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGI  130 (337)
Q Consensus        51 ~~~~~~~e~~~~~~~~~~~~p~~a~~~~~~e~~~~sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~  130 (337)
                      |+||++.++++..+.|||+||||+|.++.+|+++|+++|++++||+||++|+|++++++++...+.+      ++...++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~------~~~~~g~   97 (304)
T 3cn5_A           24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VCGSVGL   97 (304)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS------TTCSCHH
T ss_pred             HHHHhhccccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccC------CCCCCCc
Confidence            7888632211334679999999999999999999999999999999999999999998876543321      1356788


Q ss_pred             hhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHHHhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhcCCCccc
Q 019681          131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANE  210 (337)
Q Consensus       131 l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~~~~~~~  210 (337)
                      +.+++++|+++++++|+++++||||+|||||+++++.|+++|.+++.|++||++||++|++++|.++++.++..+++.+.
T Consensus        98 l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~  177 (304)
T 3cn5_A           98 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS  177 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCC
T ss_pred             eeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888777777777


Q ss_pred             cCCcccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHcC
Q 019681          211 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN  290 (337)
Q Consensus       211 ~~~g~s~~~~f~~E~i~TfvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~~  290 (337)
                      +.++++..++|+.|+++||+|+++++.++|+++..+++|.+.++|+.||++|++++++++++||++|||||||||+++++
T Consensus       178 ~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~  257 (304)
T 3cn5_A          178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFN  257 (304)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHC
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHc
Confidence            77888999999999999999999999999877665555556699999999999999999999999999999999999976


Q ss_pred             CCCCCCcceehhhhHHHHHHHHHHHHHHHcccchhhhccCccCCCCC
Q 019681          291 KDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSQSRV  337 (337)
Q Consensus       291 ~~~~w~~~wvywvgP~iGa~laa~~~~~~~~~~~~~~~~~~~~~~~~  337 (337)
                      ++..|+++|+||+||++|+++|+++|++++++++.+..++||+++++
T Consensus       258 ~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~~~~~~~~~~~~~~~  304 (304)
T 3cn5_A          258 SNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIKALGEFRSNPTN  304 (304)
T ss_dssp             CHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCCC-------------
T ss_pred             cCCCcCceEEEeehHHHHHHHHHHHHHHHhCCCCCCcccccccCCCC
Confidence            66789999999999999999999999999999998989899998864
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 7e-57
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-49
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-41
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-41
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  183 bits (464), Expect = 7e-57
 Identities = 100/242 (41%), Positives = 142/242 (58%), Gaps = 10/242 (4%)

Query: 79  AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFG 138
           A E  K  F+RA++AEF+A +LF+++++ + +G+        N    A    + ++ AFG
Sbjct: 2   ASEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPI--KSNQTTGAVQDNVKVSLAFG 59

Query: 139 GMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK 198
             I  L      ISG H+NPAVT GL L+ ++S++RA+MY++AQC+GAI    ++     
Sbjct: 60  LSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITS 119

Query: 199 SYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPI 258
           S       G N LA G ++G GL  EIIGT  LV  V + TD +R      +    PL I
Sbjct: 120 SLP-DNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAI 174

Query: 259 GFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 318
           GF+V + HL  I  TG GINPARS G++VI +    + D W+FWVGPFIGAA+A   + F
Sbjct: 175 GFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDF 231

Query: 319 IL 320
           IL
Sbjct: 232 IL 233
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.22
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.16
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.14
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.09
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.3e-50  Score=370.25  Aligned_cols=226  Identities=27%  Similarity=0.386  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhheeecccccCCCCCCCCCCCCcchhhHHHHHHHHHHHHhhhhcCcCCcccchhhhHHHH
Q 019681           86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF  165 (337)
Q Consensus        86 sl~r~~iaEfigT~llv~i~~~~vi~~~~~~~~~~~~~~~~~~g~l~ia~a~G~~v~~li~~~~~iSGaHiNPAVTla~~  165 (337)
                      +|.|++++||+||++|+|++++++.......         ...+.+.+++++|+++++++|+++++||||+|||||++++
T Consensus         1 tl~~~~lAEflGT~~lvf~g~g~~~~~~~~~---------~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~   71 (254)
T d1fx8a_           1 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAG---------ASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALW   71 (254)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHhccccC---------CCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHH
Confidence            3678999999999999999988766544331         3456788999999999999999999999999999999999


Q ss_pred             HhcCCchhHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhc-----------------CCCccccCCcccchhhHHHHHHHH
Q 019681          166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRY-----------------GGGANELADGYSTGVGLAAEIIGT  228 (337)
Q Consensus       166 l~g~~s~~~a~~Yi~AQ~lGai~ga~lv~~~~~~~~~~~-----------------~~~~~~~~~g~s~~~~f~~E~i~T  228 (337)
                      +.|+++|.+++.|+++|++|+++|+++++.++++.+...                 +..++.+.++.+..++|+.|+++|
T Consensus        72 i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~T  151 (254)
T d1fx8a_          72 LFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVIT  151 (254)
T ss_dssp             HHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHH
T ss_pred             HcCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999988765332                 112334566788999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchHhhHHHHHHc----------CCCCCCCcc
Q 019681          229 FVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIY----------NKDKAWDDQ  298 (337)
Q Consensus       229 fvLv~~vl~~~~~k~~~~~~~~~~l~pl~IGl~v~~~~~~~~~~TG~~~NPAr~lg~ai~~----------~~~~~w~~~  298 (337)
                      |+|+++++.++|++|+..+   ..+.|+.||+.+.+.+++.+++||++|||||||||+++.          ..+.+|+++
T Consensus       152 f~lv~~il~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~  228 (254)
T d1fx8a_         152 AILMGLILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYF  228 (254)
T ss_dssp             HHHHHHHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTT
T ss_pred             HHHHHHHHHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCee
Confidence            9999999999998876543   457899999999999999999999999999999999984          134689999


Q ss_pred             eehhhhHHHHHHHHHHHHHHHcccc
Q 019681          299 WLFWVGPFIGAAIAAFYHQFILRAG  323 (337)
Q Consensus       299 wvywvgP~iGa~laa~~~~~~~~~~  323 (337)
                      ||||+||++|+++|+++|++++..+
T Consensus       229 wvy~vgP~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         229 LVPLFGPIVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHTGGG
T ss_pred             ehHhHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998654
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure