Citrus Sinensis ID: 019686

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
cccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccEEEEcccccEEEEEcc
ccccccccccccccccccccccccHHcccccHHHcccccccEEEEEccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccHHcccccccccccHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHHHHHHccHHHHHHHHHcHHHHEEEccccccccEEEEEEcccEEEEEEcc
mylsekprpyltekprpidyyKDEAVAAAAAAAAAASSRDMIMEVAAasngelqpqqmiladssggedhevrapkkraeTWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMRekgfdrsptmctDKWRNLLKEFKktkhqdrgsgsakMSYYKEIDEILKERSKNAQYKATsvansankvdtfmqfsdkgfddtsisfgpveatgrptlnlerrldhdghplaITTADAVAaagvppwnwrdpppgnggegqsfggkvisvkcgdytrrigidgtPDAIKEAIKSAFGIRTkrafwledEDQIVRCidrdmpvgnytlhldegkLLHMWFL
mylsekprpyltekprpiDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEvrapkkraetwvqdETRILIAFRREMDGLFNTSKSNKHLWEQISAKmrekgfdrsptmctDKWRNLLKefkktkhqdrgsgsakmsYYKEIDEILKERSKNAqykatsvansankvDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRrigidgtpdaIKEAIKSAFgirtkrafwledEDQIVRCIDRDMPVGNYTlhldegkllhmwfl
MYLSEKPRPYLTEKPRPIDYYKDEavaaaaaaaaaaSSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLaittadavaaaGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
*******************YY**********************************************************TWVQDETRILIAFRREMDGLFNTS***KHLWEQ****************CTDKWRNLL**********************************************************************************RLDHDGHPLAITTADAVAAAGVPPWNWR************FGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWF*
************************************************************************************ETRILIAFRR**************LWEQISAKMREKGFDRSPTMCTDKWRNLLKEFK***************YYKEIDEIL****************************************************************************************************SVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
MYLSEKPRPYLTEKPRPIDYYKDEAV*************DMIMEVAAASNGELQPQQMILAD*****************TWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKK***********KMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
******PRPY*****RPID**K*E***************DMIMEVAAASNGELQPQQ*********************ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRG*GSAKMSYYKEIDEILKERSKNA************************************************LDHDGHPLAITTADAVAAAGVPPWNWRDPP********SFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
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MYLSEKPRPYLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGELQPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEGKLLHMWFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9FX53406 Trihelix transcription fa yes no 0.934 0.775 0.669 1e-130
Q9LU92372 Trihelix transcription fa no no 0.857 0.776 0.693 1e-115
Q9SDW0323 Trihelix transcription fa no no 0.326 0.340 0.327 2e-11
O80450289 Trihelix transcription fa no no 0.272 0.318 0.391 2e-11
Q39117575 Trihelix transcription fa no no 0.270 0.158 0.333 1e-08
Q8H181619 Trihelix transcription fa no no 0.240 0.130 0.344 4e-06
Q9C882 587 Trihelix transcription fa no no 0.201 0.115 0.376 5e-06
Q63HK3 967 Zinc finger protein with yes no 0.252 0.087 0.282 0.0007
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function desciption
 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/345 (66%), Positives = 273/345 (79%), Gaps = 30/345 (8%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGEL---------------- 53
           ++++K RP D+YKD+       ++  +++RDM+++V   +N  +                
Sbjct: 2   FISDKSRPTDFYKDDH----HNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLH 57

Query: 54  --QPQQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWE 111
             QPQQ IL   S GEDHEV+APKKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWE
Sbjct: 58  QSQPQQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWE 117

Query: 112 QISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKN 171
           QIS+KMREKGFDRSPTMCTDKWRNLLKEFKK KH DRG+GSAKMSYYKEI++IL+ERSK 
Sbjct: 118 QISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKK 177

Query: 172 A---QY-KATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHP 227
               QY K+ +   ++ KVD+FMQF+DKGFDDTSISFG VEA GRP LNLERRLDHDGHP
Sbjct: 178 VTPPQYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHP 237

Query: 228 LAITTA-DAVAAAGVPPWNWRDPPPGNGGE--GQSFGGKVISVKCGDYTRRIGIDGTPDA 284
           LAITTA DAVAA GV PWNWR+  PGNG +  GQ FGG+VI+VK GDYTRRIG+DG+ +A
Sbjct: 238 LAITTAVDAVAANGVTPWNWRE-TPGNGDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEA 296

Query: 285 IKEAIKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEG 329
           IKE I+SAFG+RT+RAFWLEDEDQI+RC+DRDMP+GNY L LD+G
Sbjct: 297 IKEVIRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDG 341
Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDW0|TGT3A_ARATH Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1 Back     alignment and function description
>sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1 Back     alignment and function description
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function description
>sp|Q8H181|GTL2_ARATH Trihelix transcription factor GTL2 OS=Arabidopsis thaliana GN=At5g28300 PE=2 SV=1 Back     alignment and function description
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 PE=1 SV=2 Back     alignment and function description
>sp|Q63HK3|ZKSC2_HUMAN Zinc finger protein with KRAB and SCAN domains 2 OS=Homo sapiens GN=ZKSCAN2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
147816769384 hypothetical protein VITISV_030092 [Viti 0.890 0.781 0.772 1e-137
356540183374 PREDICTED: trihelix transcription factor 0.910 0.820 0.745 1e-135
224102349385 predicted protein [Populus trichocarpa] 0.905 0.792 0.753 1e-135
351724533376 GT-1 [Glycine max] gi|161789859|gb|ABX79 0.910 0.816 0.740 1e-135
255547822398 transcription factor, putative [Ricinus 0.913 0.773 0.728 1e-133
224110784384 predicted protein [Populus trichocarpa] 0.905 0.794 0.746 1e-132
359473706348 PREDICTED: trihelix transcription factor 0.827 0.801 0.811 1e-131
30683296406 DNA binding protein GT-1 [Arabidopsis th 0.934 0.775 0.669 1e-129
598073406 GT-1 [Arabidopsis thaliana] 0.934 0.775 0.669 1e-129
449494476382 PREDICTED: trihelix transcription factor 0.890 0.785 0.722 1e-127
>gi|147816769|emb|CAN73236.1| hypothetical protein VITISV_030092 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 248/321 (77%), Positives = 274/321 (85%), Gaps = 21/321 (6%)

Query: 10  YLTEKPRPIDYYKDEAVAAAAAAAAAASSRDMIMEVAAASNGEL--QPQQMILADSSGGE 67
           YL EKPRP+D+YK+E              RDM++EV   SNG L  Q QQMIL DSSG E
Sbjct: 2   YLPEKPRPLDFYKEEE-----------EGRDMMIEVV--SNGGLPHQQQQMILGDSSG-E 47

Query: 68  DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPT 127
           DHE +APKKRAETWVQDETR LIAFRR+MD LFNTSKSNKHLWEQISAKMREKGFDRSPT
Sbjct: 48  DHEPKAPKKRAETWVQDETRSLIAFRRDMDCLFNTSKSNKHLWEQISAKMREKGFDRSPT 107

Query: 128 MCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNAQYKATSVANSANKVD 187
           MCTDKWRNLLKEFKK KHQDRGSGSAKMSYYKEI+EILKERSKNA YK+ +++    KVD
Sbjct: 108 MCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKNAHYKSPTMS----KVD 163

Query: 188 TFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAAAGVPPWNWR 247
            F+QFSDKG DDTSI FGPVEA+GRPTLNLER+LDHDGHPLAIT+ADAV A GVPPWNWR
Sbjct: 164 PFIQFSDKGIDDTSIPFGPVEASGRPTLNLERQLDHDGHPLAITSADAVTANGVPPWNWR 223

Query: 248 DPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDED 307
           +  PG+GGE QS+GG+VISVK GDYTRRIGIDGT DAIKEAIKSAF +RTKR FWLEDED
Sbjct: 224 E-TPGSGGESQSYGGRVISVKWGDYTRRIGIDGTADAIKEAIKSAFRLRTKRGFWLEDED 282

Query: 308 QIVRCIDRDMPVGNYTLHLDE 328
           QI+R +DRDMP+G+Y+LHLDE
Sbjct: 283 QIIRTLDRDMPLGSYSLHLDE 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356540183|ref|XP_003538569.1| PREDICTED: trihelix transcription factor GT-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224102349|ref|XP_002312646.1| predicted protein [Populus trichocarpa] gi|222852466|gb|EEE90013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351724533|ref|NP_001236549.1| GT-1 [Glycine max] gi|161789859|gb|ABX79677.1| GT-1 [Glycine max] Back     alignment and taxonomy information
>gi|255547822|ref|XP_002514968.1| transcription factor, putative [Ricinus communis] gi|223546019|gb|EEF47522.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224110784|ref|XP_002315635.1| predicted protein [Populus trichocarpa] gi|222864675|gb|EEF01806.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473706|ref|XP_002270945.2| PREDICTED: trihelix transcription factor GT-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30683296|ref|NP_172802.2| DNA binding protein GT-1 [Arabidopsis thaliana] gi|75334447|sp|Q9FX53.1|TGT1_ARATH RecName: Full=Trihelix transcription factor GT-1; AltName: Full=Trihelix DNA-binding protein GT-1 gi|9958053|gb|AAG09542.1|AC011810_1 DNA binding protein GT-1 [Arabidopsis thaliana] gi|110736565|dbj|BAF00248.1| hypothetical protein [Arabidopsis thaliana] gi|332190897|gb|AEE29018.1| DNA binding protein GT-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|598073|gb|AAA66473.1| GT-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449494476|ref|XP_004159556.1| PREDICTED: trihelix transcription factor GT-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2009897406 GT-1 "GT-1" [Arabidopsis thali 0.946 0.785 0.648 3.2e-113
TAIR|locus:2092130372 AT3G25990 [Arabidopsis thalian 0.857 0.776 0.68 4e-106
TAIR|locus:2179192323 AT5G01380 [Arabidopsis thalian 0.326 0.340 0.342 1.4e-12
TAIR|locus:2042847289 AT2G38250 [Arabidopsis thalian 0.272 0.318 0.391 7.8e-12
TAIR|locus:2036267603 AT1G76880 [Arabidopsis thalian 0.367 0.205 0.317 6.1e-11
TAIR|locus:2036272575 GT2 [Arabidopsis thaliana (tax 0.347 0.203 0.307 5e-09
TAIR|locus:2167336911 emb2746 "embryo defective 2746 0.480 0.177 0.238 3.6e-08
TAIR|locus:2185319619 AT5G28300 [Arabidopsis thalian 0.385 0.210 0.300 4.6e-08
TAIR|locus:2169013398 AT5G47660 [Arabidopsis thalian 0.275 0.233 0.288 8.3e-07
TAIR|locus:2100148 481 EDA31 "embryo sac development 0.270 0.189 0.315 4.1e-05
TAIR|locus:2009897 GT-1 "GT-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
 Identities = 221/341 (64%), Positives = 255/341 (74%)

Query:    10 YLTEKPRPIDYYKDEXXXXXXXXXXXXSSRDMIM----EVAAAS-------NGEL---QP 55
             ++++K RP D+YKD+               D++      V   S       N  L   QP
Sbjct:     2 FISDKSRPTDFYKDDHHNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLHQSQP 61

Query:    56 QQMILADSSGGEDHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISA 115
             QQ IL   S GEDHEV+APKKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+
Sbjct:    62 QQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS 121

Query:   116 KMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAKMSYYKEIDEILKERSKNA--- 172
             KMREKGFDRSPTMCTDKWRNLLKEFKK KH DRG+GSAKMSYYKEI++IL+ERSK     
Sbjct:   122 KMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKVTPP 181

Query:   173 QY-KATSVANSANKVDTFMQFSDKGFDDTSISFGPVEATGRPTLNLERRLDHDGHPLXXX 231
             QY K+ +   ++ KVD+FMQF+DKGFDDTSISFG VEA GRP LNLERRLDHDGHPL   
Sbjct:   182 QYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHPLAIT 241

Query:   232 XXXXXXXX-GVPPWNWRDPPPGNGGE--GQSFGGKVISVKCGDYTRRIGIDGTPDAIKEA 288
                      GV PWNWR+ P GNG +  GQ FGG+VI+VK GDYTRRIG+DG+ +AIKE 
Sbjct:   242 TAVDAVAANGVTPWNWRETP-GNGDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEAIKEV 300

Query:   289 IKSAFGIRTKRAFWLEDEDQIVRCIDRDMPVGNYTLHLDEG 329
             I+SAFG+RT+RAFWLEDEDQI+RC+DRDMP+GNY L LD+G
Sbjct:   301 IRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDG 341
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0042802 "identical protein binding" evidence=IPI
GO:0043565 "sequence-specific DNA binding" evidence=IDA
TAIR|locus:2092130 AT3G25990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179192 AT5G01380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042847 AT2G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036267 AT1G76880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036272 GT2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167336 emb2746 "embryo defective 2746" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185319 AT5G28300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169013 AT5G47660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100148 EDA31 "embryo sac development arrest 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FX53TGT1_ARATHNo assigned EC number0.66950.93470.7758yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 4e-29
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 2e-23
pfam1387378 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-bindi 7e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 0.001
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 0.002
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 0.004
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information 
 Score =  106 bits (266), Expect = 4e-29
 Identities = 34/66 (51%), Positives = 45/66 (68%)

Query: 79  ETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLK 138
           + W ++ET  LI  RREM+  F  +KS K LWE+I+AKMRE G++RS   C +KW NL K
Sbjct: 1   KRWPREETLSLIRLRREMESRFQETKSKKALWEEIAAKMRELGYNRSAKQCKEKWENLNK 60

Query: 139 EFKKTK 144
            +KK K
Sbjct: 61  YYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|222429 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
KOG4282345 consensus Transcription factor GT-2 and related pr 99.9
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.86
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.55
smart0059589 MADF subfamily of SANT domain. 98.38
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.25
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.08
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.7
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.51
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.42
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.25
PLN03212249 Transcription repressor MYB5; Provisional 95.19
PLN03091 459 hypothetical protein; Provisional 94.08
PLN03091 459 hypothetical protein; Provisional 93.56
PLN03212249 Transcription repressor MYB5; Provisional 92.74
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 85.34
KOG0051607 consensus RNA polymerase I termination factor, Myb 85.0
KOG1279506 consensus Chromatin remodeling factor subunit and 84.41
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 82.21
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=99.90  E-value=7.6e-23  Score=197.59  Aligned_cols=226  Identities=24%  Similarity=0.369  Sum_probs=159.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCCCC-CCCCCc
Q 019686           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS-GSAKMS  156 (337)
Q Consensus        78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~kGs-g~~kWp  156 (337)
                      ...|+.+||++||.+|++++..|..++.|..+|++||++|.+.||.||+.||+.||+||+++||+.+....+. +...|+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~  133 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK  133 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence            6999999999999999999999999999999999999999999999999999999999999999999887643 557899


Q ss_pred             cHHHHHHHHc-ccccccc-cccc-ccCCC-ccchhhhhcccCCCCCCCCCCCCCccCCCCC-ccccccccCCCCCCcccc
Q 019686          157 YYKEIDEILK-ERSKNAQ-YKAT-SVANS-ANKVDTFMQFSDKGFDDTSISFGPVEATGRP-TLNLERRLDHDGHPLAIT  231 (337)
Q Consensus       157 YFdeMDeILg-~rp~~~~-~ksp-s~s~S-~~ki~s~~~~s~~~~~dts~~fgpve~~gr~-~~n~e~~ld~d~h~l~~~  231 (337)
                      ||.+||.++. ..+.... ...+ ...++ +..+.+-.+|+....... ..+.-.+..+.+ .++.+-.....+.+.+..
T Consensus       134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  212 (345)
T KOG4282|consen  134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQ-FDGSSLEDSSQPSGLNEDNSNSSSPEPVAGS  212 (345)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccc-cCCCcCCCCCcccccCccccccCCCCCCCcc
Confidence            9999999997 2221111 1110 00000 111222133332222222 222223333333 344444444455665544


Q ss_pred             hhHHHHhcCCCCCCCCCCCCCCCCCCCcccceEEEEecCcceeeecccCCHHHHHHHHHHhhcccccceeeccccchhhh
Q 019686          232 TADAVAAAGVPPWNWRDPPPGNGGEGQSFGGKVISVKCGDYTRRIGIDGTPDAIKEAIKSAFGIRTKRAFWLEDEDQIVR  311 (337)
Q Consensus       232 ~a~a~aa~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (337)
                      .++..+    .+++++++ +..++.           +.+.+.++++++|+.+.+++.++..++...+...|++.-.+ .+
T Consensus       213 ~~~~~~----~s~~~~~s-~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~  275 (345)
T KOG4282|consen  213 LSNDTS----SSSSPDDS-ADSEGG-----------KSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEE-KK  275 (345)
T ss_pred             hhhccc----cccchhcc-cccccC-----------CCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhc-cc
Confidence            444433    78999999 433332           56788999999999999999999999999999999988776 66


Q ss_pred             hcccCCCccc
Q 019686          312 CIDRDMPVGN  321 (337)
Q Consensus       312 ~~~~~~~~~~  321 (337)
                      .+.|-++...
T Consensus       276 ~~~~~~~~e~  285 (345)
T KOG4282|consen  276 EQERMSEEEK  285 (345)
T ss_pred             hHhhhhHHHH
Confidence            6666555443

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2jmw_A86 Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 2e-41
2ebi_A86 Arabidopsis Gt-1 Dna-Binding Domain With T133d Phos 9e-41
>pdb|2JMW|A Chain A, Structure Of Dna-Binding Domain Of Arabidopsis Gt-1 Length = 86 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 81/86 (94%)
Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSPTMCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWR 60
Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>pdb|2EBI|A Chain A, Arabidopsis Gt-1 Dna-Binding Domain With T133d Phosphomimetic Mutation Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 2e-32
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score =  115 bits (289), Expect = 2e-32
 Identities = 78/86 (90%), Positives = 80/86 (93%)

Query: 75  KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWR 134
           KKRAETWVQDETR LI FRR MDGLFNTSKSNKHLWEQIS+KMREKGFDRSP MCTDKWR
Sbjct: 1   KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60

Query: 135 NLLKEFKKTKHQDRGSGSAKMSYYKE 160
           NLLKEFKK KH DRG+GSAKMSYYKE
Sbjct: 61  NLLKEFKKAKHHDRGNGSAKMSYYKE 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.91
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.08
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.84
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.76
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.47
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.46
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.45
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.43
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.35
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.31
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.25
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.23
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.16
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.14
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.13
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.11
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.1
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.06
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 96.98
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.84
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.74
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.73
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.7
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.59
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.45
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.42
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.13
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.99
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 94.89
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.86
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.78
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.71
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.54
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.85
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.58
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.17
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 93.4
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 92.12
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 91.83
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 91.31
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 89.87
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 89.44
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 87.94
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.91  E-value=7.7e-25  Score=172.94  Aligned_cols=86  Identities=91%  Similarity=1.401  Sum_probs=81.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 019686           75 KKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGSGSAK  154 (337)
Q Consensus        75 ~~R~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiKd~~kGsg~~k  154 (337)
                      ++|..+||++||++||++|.+++..|..++++..+|++||+.|.++||+||+.||+.||+||++.|++++++++.+|+.+
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~   80 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAK   80 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence            46899999999999999999999999998899999999999999999999999999999999999999999987667779


Q ss_pred             CccHHH
Q 019686          155 MSYYKE  160 (337)
Q Consensus       155 WpYFde  160 (337)
                      |+||++
T Consensus        81 ~~yf~e   86 (86)
T 2ebi_A           81 MSYYKE   86 (86)
T ss_dssp             CCCCCC
T ss_pred             CCCCCc
Confidence            999974
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 0.001
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 0.002
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 0.002
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 68  DHEVRAPKKRAETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPT 127
           + +V +  ++   W ++  R+++   +E         +  H +  IS ++     +++P 
Sbjct: 23  NSKVSSTGEKVVLWTREADRVILTMCQEQG-------AQPHTFSVISQQLG----NKTPV 71

Query: 128 MCTDKWRNLLKEFKKTKHQDRGSG 151
             + ++R L++ F         SG
Sbjct: 72  EVSHRFRELMQLFHTACESGPSSG 95
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.91
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.85
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.76
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.66
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.42
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.3
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.17
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.17
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.06
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 96.98
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.73
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.56
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 95.97
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.66
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 93.76
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.91  E-value=1.5e-05  Score=57.74  Aligned_cols=57  Identities=14%  Similarity=0.371  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhcccCCchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhh
Q 019686           78 AETWVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTK  144 (337)
Q Consensus        78 ~~~WT~eETklLI~Lr~E~~~~F~~skrnk~lWEeIS~kM~ekGy~RTaeQCr~KWKNLKk~YKKiK  144 (337)
                      +..||.+|-..|+++...+    .  .....-|..||..|.    .||+.||+.+|+.|....+.+.
T Consensus         1 G~~WT~eEd~~L~~~v~~~----~--~~~~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVY----D--KDTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHS----C--TTCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHH----C--CCCchHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccc
Confidence            4689999999999998643    2  223356999999986    4999999999999998888765
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure