Citrus Sinensis ID: 019694

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccEEEcccHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEHHHcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcHHcccccccccccccccHHHHHHHHHHHcccccccEcccccccccccccEEEEEccccccccHHHHccccccEEEccccHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
MDKLVVHITKnfmslpnikvplilgiwggkgqgksFQCELVFAKMginpimmsagelesgnagepAKLIRQRYREAADIIKKGKMCCLMINDLdagagrmggttqYTVNNQMVNATLmniadnptcvqlpgmynkeenprvpiivtgndfstlyaplirdgrmekfywaptredrigvckgifrndnvadddIVKLvdtfpgqsidfFGALRARVYDDEVRKWISGVGVgsigkslvnskeaaptfeqprMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAlgeanedaiqsgnfygkaaqqmnvpvpegctdptaenfdptarsddgscqytl
Flexible Loop (DISEMBL)
MDKLVVHITknfmslpniKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISgvgvgsigkslvnskeaaptfeqpRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTaenfdptarsddgscqytl
Low Complexity Region (SEG)
MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWisgvgvgsigKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL
Disordered region (IsUnstruct)
***LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS*************KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV*****************KLLEYGNMIVQEQENVKRVQLADKYLSEA******************************************************
Disordered Region (DISOPRED)
*DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA****************NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV************************************************************************************************************
Disordered Region (DISEMBL)
MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPT************
Disordered Region (DISPRO)
MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q7X9A0	476	Ribulose bisphosphate car	N/A	no	1.0	0.707	0.893	1e-180
P93431	466	Ribulose bisphosphate car	yes	no	1.0	0.723	0.866	1e-178
P10896	474	Ribulose bisphosphate car	yes	no	1.0	0.710	0.857	1e-175
Q40073	464	Ribulose bisphosphate car	N/A	no	1.0	0.726	0.836	1e-175
P10871	472	Ribulose bisphosphate car	N/A	no	1.0	0.713	0.818	1e-170
Q40281	437	Ribulose bisphosphate car	N/A	no	0.890	0.686	0.91	1e-163
Q7X999	435	Ribulose bisphosphate car	N/A	no	0.884	0.685	0.902	1e-162
O98997	439	Ribulose bisphosphate car	N/A	no	0.887	0.681	0.882	1e-160
Q42450	425	Ribulose bisphosphate car	N/A	no	0.890	0.705	0.873	1e-158
Q9ZT00	433	Ribulose bisphosphate car	N/A	no	0.887	0.690	0.862	1e-157

>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1

 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/339 (89%), Positives = 318/339 (93%), Gaps = 2/339 (0%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVRKW+S VGV +IGK LVNSK
Sbjct: 318 GIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY- 299
           E  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY 
Sbjct: 378 EGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

Query: 300 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y  
Sbjct: 438 GQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.
Larrea tridentata (taxid: 66636)

>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2

 Score =  623 bits (1607), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 293/338 (86%), Positives = 319/338 (94%), Gaps = 1/338 (0%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 129 MDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 189 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCK
Sbjct: 249 ADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCK 308

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S  GV +IGK LVNS+
Sbjct: 309 GIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSR 368

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct: 369 EGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428

Query: 301 KAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           + AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT 
Sbjct: 429 QGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYTF 466

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/337 (85%), Positives = 306/337 (90%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK++  +GV  IGK LVNS+
Sbjct: 318 GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSR 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYG
Sbjct: 378 EGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           K AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y  
Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 282/337 (83%), Positives = 315/337 (93%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 128 MDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 187

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 188 NAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 247

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           AD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCK
Sbjct: 248 ADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCK 307

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+   G+ +IGK LVNS+
Sbjct: 308 GIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSR 367

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           +   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct: 368 DGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           K AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT 
Sbjct: 428 KGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Hordeum vulgare (taxid: 4513)

>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2

 Score =  599 bits (1544), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 276/337 (81%), Positives = 308/337 (91%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESG
Sbjct: 136 MDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESG 195

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 196 NAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNI 255

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 256 ADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 315

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW++ VGV ++GK LVNSK
Sbjct: 316 GIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSK 375

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           +  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+G
Sbjct: 376 DGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct: 436 KAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Spinacia oleracea (taxid: 3562)

>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1

 Score =  574 bits (1480), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/300 (91%), Positives = 287/300 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCI 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI+GVGV SIGK LVNSK
Sbjct: 318 GIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Malus domestica (taxid: 3750)

>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/298 (90%), Positives = 286/298 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVRKW+S VGV +IGK LVNSK
Sbjct: 318 GIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 298
           E  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct: 378 EGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Larrea tridentata (taxid: 66636)

>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2

 Score =  563 bits (1450), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 264/299 (88%), Positives = 284/299 (94%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           +DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 140 LDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 199

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 200 NAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 259

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCK
Sbjct: 260 ADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCK 319

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGV + GK LVNSK
Sbjct: 320 GIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSK 379

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
           E  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct: 380 EGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Vigna radiata var. radiata (taxid: 3916)

>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1

 Score =  556 bits (1434), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/301 (87%), Positives = 284/301 (94%), Gaps = 1/301 (0%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 126 MDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 185

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           N GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 186 N-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 244

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           AD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 245 ADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 304

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+  +GV +I K LVNS+
Sbjct: 305 GIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSR 364

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct: 365 EGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

Query: 301 K 301
           K
Sbjct: 425 K 425

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Hordeum vulgare (taxid: 4513)

>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3

 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 258/299 (86%), Positives = 283/299 (94%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESG
Sbjct: 134 MDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESG 193

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 194 NAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 253

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 254 ADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 313

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+S  GV +I + LVNSK
Sbjct: 314 GIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSK 373

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 299
           E  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct: 374 EGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

Activation of RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase; EC 4.1.1.39) involves the ATP-dependent carboxylation of the epsilon-amino group of lysine leading to a carbamate structure.

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
115334977	474	chloroplast ribulose-1,5-bisphosphate ca	1.0	0.710	0.913	0.0
115334981	474	chloroplast ribulose-1,5-bisphosphate ca	1.0	0.710	0.910	0.0
255566442	473	Ribulose bisphosphate carboxylase/oxygen	1.0	0.712	0.905	0.0
147856329	472	hypothetical protein VITISV_039112 [Viti	0.994	0.709	0.910	0.0
225434859	472	PREDICTED: ribulose bisphosphate carboxy	0.994	0.709	0.910	0.0
359481752	474	PREDICTED: ribulose bisphosphate carboxy	1.0	0.710	0.896	0.0
12620883	435	ribulose-1,5-bisphosphate carboxylase/ox	1.0	0.774	0.905	0.0
357492323	476	Ribulose-1 5-bisphosphate carboxylase/ox	1.0	0.707	0.881	0.0
449441384	474	PREDICTED: ribulose bisphosphate carboxy	1.0	0.710	0.893	0.0
307136240	474	ribulose bisphosphate carboxylase/oxygen	1.0	0.710	0.890	1e-180

>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase large protein isoform [Acer rubrum]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/337 (91%), Positives = 325/337 (96%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFMSLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNVAD +++KLVDTFPGQSIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK
Sbjct: 318 GIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
              PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYG
Sbjct: 378 NGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+NVPVPEGCTD  A N+DPTARSDDGSCQYTL
Sbjct: 438 KAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474

Source: Acer rubrum

Species: Acer rubrum

Genus: Acer

Family: Aceraceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase large protein isoform [Acer rubrum]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/337 (91%), Positives = 325/337 (96%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           M KLVVHITKNFMSLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESG
Sbjct: 138 MGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 258 ADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNVAD++++KLVDTFPGQSIDFFGALRARVYDDEVRKWISG+GV SIGK+LVNSK
Sbjct: 318 GIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGIGVDSIGKNLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
              PTFEQP+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DAI+ G+FYG
Sbjct: 378 NGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANDDAIKRGSFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+NVPVPEGCTD  A N+DPTARSDDGSCQYTL
Sbjct: 438 KAAQQVNVPVPEGCTDRNAANYDPTARSDDGSCQYTL 474

Source: Acer rubrum

Species: Acer rubrum

Genus: Acer

Family: Aceraceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis] gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/337 (90%), Positives = 321/337 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 137 MDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 197 NAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 257 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 316

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIF+ D VA +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI GVGV  IGKSLVNSK
Sbjct: 317 GIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGGVGVEKIGKSLVNSK 376

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKY+SEAALGEAN+D+I+ G FYG
Sbjct: 377 EGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSEAALGEANQDSIERGTFYG 436

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+N+PVPEGCTDPTA+NFDPTARSDDGSC Y  
Sbjct: 437 KAAQQVNIPVPEGCTDPTAQNFDPTARSDDGSCTYKF 473

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/335 (91%), Positives = 320/335 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP REDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNV DDDIVK+VDTFPGQSIDFFGALRARVYDDEVRKWISGVGV  IGK LVNSK
Sbjct: 318 GIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAALG+AN D+I+ G FYG
Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 335
           KAAQQ+ VPVPEGCTDP+A NFDPTARSD+GSCQY
Sbjct: 438 KAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic isoform 1 [Vitis vinifera] gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/335 (91%), Positives = 320/335 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF+KMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFSKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP REDRIGVCK
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPNREDRIGVCK 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNV DDDIVK+VDTFPGQSIDFFGALRARVYDDEVRKWISGVGV  IGK LVNSK
Sbjct: 318 GIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDFIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAALG+AN D+I+ G FYG
Sbjct: 378 EGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSEAALGDANVDSIERGTFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 335
           KAAQQ+ VPVPEGCTDP+A NFDPTARSD+GSCQY
Sbjct: 438 KAAQQVGVPVPEGCTDPSAANFDPTARSDNGSCQY 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like [Vitis vinifera] gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/337 (89%), Positives = 323/337 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DN+  +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKW++ VGV  IGK LVNSK
Sbjct: 318 GIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRKWVASVGVEGIGKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFE+P+MT++KLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ANEDAI+SG+FYG
Sbjct: 378 EGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKSGSFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+N+PVPEGCTDP+A NFDPTARSDDGSC Y +
Sbjct: 438 KAAQQVNLPVPEGCTDPSANNFDPTARSDDGSCLYQI 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 [Gossypium hirsutum]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/337 (90%), Positives = 317/337 (94%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHI+KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 99  MDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 158

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 159 NAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 218

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCK
Sbjct: 219 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCK 278

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR D V D+DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS VGV S+GK LVNS+
Sbjct: 279 GIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSR 338

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+V EQENVKRVQLADKYLSEAALGEANED+I  G FYG
Sbjct: 339 EGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYG 398

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+ VPVPEGCTDP A+NFDPTARSDDG+C Y  
Sbjct: 399 KAAQQVGVPVPEGCTDPNADNFDPTARSDDGTCTYKF 435

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago truncatula] gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago truncatula]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/337 (88%), Positives = 323/337 (95%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQ ELVFAKMGINPIMMSAGELESG
Sbjct: 139 MDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESG 198

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREA+DII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 199 NAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 258

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct: 259 ADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 318

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DNV ++D+VK+VDTFPGQSIDFFGALRARVYDDEVRKWI+GVG+ +IGK LVNSK
Sbjct: 319 GIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSK 378

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTF+QP+M++EKLLEYGNM+VQEQENVKRVQLADKYL  AALG+AN+DAI+SG+FYG
Sbjct: 379 EGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSFYG 438

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+N+P+PEGCTDP A+NFDPTARSDDG+C YT 
Sbjct: 439 KAAQQVNIPIPEGCTDPNAKNFDPTARSDDGTCLYTF 475

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like [Cucumis sativus]

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/337 (89%), Positives = 318/337 (94%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHI+KNFM LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DN+  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W+  VGV +I K LVNSK
Sbjct: 318 GIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWVCSVGVENIAKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ANEDAI+SG FYG
Sbjct: 378 EGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKSGTFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+++P+PEGCTDP A+NFDPTARSDDGSC Y L
Sbjct: 438 KAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVL 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis melo subsp. melo]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 300/337 (89%), Positives = 316/337 (93%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNFM LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG
Sbjct: 138 MDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 197

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAADIIKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNI
Sbjct: 198 NAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNI 257

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 258 ADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCS 317

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR+DN+  +DI+KLVDTFPGQSIDFFGALRARVYDDEVRKW S VGV +I K LVNSK
Sbjct: 318 GIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKWASSVGVENIAKKLVNSK 377

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
           E  PT EQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+ANEDAI+ G FYG
Sbjct: 378 EGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTFYG 437

Query: 301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 337
           KAAQQ+++P+PEGCTDP A+NFDPTARSDDGSC Y  
Sbjct: 438 KAAQQVSLPIPEGCTDPNADNFDPTARSDDGSCNYVF 474

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2063922	474	RCA "rubisco activase" [Arabid	0.994	0.706	0.850	1.9e-154
TAIR|locus:2032687	432	AT1G73110 [Arabidopsis thalian	0.827	0.645	0.524	1.5e-76
ZFIN|ZDB-GENE-030131-304	389	psmc6 "proteasome (prosome, ma	0.492	0.426	0.252	5.6e-05
RGD|1308825	381	Psmc6 "proteasome (prosome, ma	0.492	0.435	0.258	7e-05
UNIPROTKB|Q5ZKX2	389	PSMC6 "Uncharacterized protein	0.492	0.426	0.258	7.3e-05
UNIPROTKB|F1MLV1	389	PSMC6 "26S protease regulatory	0.492	0.426	0.258	7.3e-05
UNIPROTKB|Q2KIW6	389	PSMC6 "26S protease regulatory	0.492	0.426	0.258	7.3e-05
UNIPROTKB|P62333	389	PSMC6 "26S protease regulatory	0.492	0.426	0.258	7.3e-05
UNIPROTKB|P62335	389	PSMC6 "26S protease regulatory	0.492	0.426	0.258	7.3e-05
MGI|MGI:1914339	389	Psmc6 "proteasome (prosome, ma	0.492	0.426	0.258	7.3e-05

TAIR|locus:2063922 RCA "rubisco activase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 285/335 (85%), Positives = 300/335 (89%)

Query:     1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
             MDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAGELESG
Sbjct:   138 MDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESG 197

Query:    61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
             NAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct:   198 NAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 257

Query:   121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
             ADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK
Sbjct:   258 ADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 317

Query:   181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSK 240
             GIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+
Sbjct:   318 GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSR 377

Query:   241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 300
             E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYG
Sbjct:   378 EGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

Query:   301 KAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 335
             K AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:   438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA;NAS

GO:0030234 "enzyme regulator activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0046863 "ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2032687 AT1G73110 [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 150/286 (52%), Positives = 200/286 (69%)

Query:     1 MDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 59
             +DK+ VHI KN+++   NIK+PLILGIWGGKGQGK+FQ EL+F  MG+ P++MSAGELES
Sbjct:   143 LDKVAVHIVKNYLAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELES 202

Query:    60 GNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 118
               AGEP +LIR RYR A+ +I+ +GKM  LMIND+DAG GR G  TQ TVNNQ+V  TLM
Sbjct:   203 DRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLM 261

Query:   119 NIADNPTCVQLPGMYNKEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 177
             N+ADNPT V +   + + +   RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + 
Sbjct:   262 NLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVN 321

Query:   178 VCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXX-KSL 236
             +   ++  D ++  D++ +VD FP Q++DF+GALR+R YD  + KW           K L
Sbjct:   322 IVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVL 381

Query:   237 VNSKEA--APTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYL 280
             +  K+    P F  P  T+E LLE G  ++ EQ+ +   +L+ +Y+
Sbjct:   382 LRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 427

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016887 "ATPase activity" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-030131-304 psmc6 "proteasome (prosome, macropain) 26S subunit, ATPase, 6" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 47/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR+++      P  + R+ + K   G I ++ ++  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

RGD|1308825 Psmc6 "proteasome (prosome, macropain) 26S subunit, ATPase, 6" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 269

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329

Query:   200 FPGQSI 205
             F G  +
Sbjct:   330 FNGADL 335

GO:0000502 "proteasome complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0022624 "proteasome accessory complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5ZKX2 PSMC6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IEA

UNIPROTKB|F1MLV1 PSMC6 "26S protease regulatory subunit 10B" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0022624 "proteasome accessory complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|Q2KIW6 PSMC6 "26S protease regulatory subunit 10B" [Bos taurus (taxid:9913)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|P62333 PSMC6 "26S protease regulatory subunit 10B" [Homo sapiens (taxid:9606)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0005524 "ATP binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IC

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P62335 PSMC6 "26S protease regulatory subunit 10B" [Spermophilus tridecemlineatus (taxid:43179)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0022624 "proteasome accessory complex" evidence=ISS

MGI|MGI:1914339 Psmc6 "proteasome (prosome, macropain) 26S subunit, ATPase, 6" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 48/186 (25%), Positives = 90/186 (48%)

Query:    26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
             ++G  G GK+     V +++  N + + +  +     GE A+LIR+ +  A D     + 
Sbjct:   172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227

Query:    86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             C + ++++DA  GR    ++ T  ++ +  TLM + +     Q+ G    +   RV +I+
Sbjct:   228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277

Query:   146 TGNDFSTLYAPLIRDGRME-KFYW-APTREDRIGVCK---G-IFRNDNVADDDIVKLVDT 199
               N   TL   L+R GR++ K +   P  + R+ + K   G I ++  +  + IVKL D 
Sbjct:   278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337

Query:   200 FPGQSI 205
             F G  +
Sbjct:   338 FNGADL 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O98997	RCA_VIGRR	No assigned EC number	0.8829	0.8872	0.6810	N/A	no
Q40073	RCAA_HORVU	No assigned EC number	0.8367	1.0	0.7262	N/A	no
P23489	RCA_CHLRE	No assigned EC number	0.7386	0.8367	0.6911	N/A	no
Q40565	RCA2_TOBAC	No assigned EC number	0.8590	0.8842	0.6788	N/A	no
Q7X999	RCA2_LARTR	No assigned EC number	0.9026	0.8842	0.6850	N/A	no
Q40281	RCA_MALDO	No assigned EC number	0.91	0.8902	0.6864	N/A	no
Q01587	RCA_CUCSA	No assigned EC number	0.8876	0.8189	0.6682	N/A	no
O49074	RCA_SOLPN	No assigned EC number	0.8614	0.8783	0.6448	N/A	no
P10896	RCA_ARATH	No assigned EC number	0.8575	1.0	0.7109	yes	no
Q40460	RCA1_TOBAC	No assigned EC number	0.8662	0.8872	0.6764	N/A	no
P10871	RCA_SPIOL	No assigned EC number	0.8189	1.0	0.7139	N/A	no
O64981	RCA_PHAVU	No assigned EC number	0.8695	0.8872	0.6780	N/A	no
Q7X9A0	RCA1_LARTR	No assigned EC number	0.8938	1.0	0.7079	N/A	no
Q9ZT00	RCA_MAIZE	No assigned EC number	0.8628	0.8872	0.6905	N/A	no
P58555	RCA_NOSS1	No assigned EC number	0.625	0.8278	0.6739	yes	no
P93431	RCA_ORYSJ	No assigned EC number	0.8668	1.0	0.7231	yes	no
Q42450	RCAB_HORVU	No assigned EC number	0.8737	0.8902	0.7058	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
PLN00020	413	PLN00020, PLN00020, ribulose bisphosphate carboxyl	0.0
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	1e-17
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	5e-06
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	0.002

>gnl|CDD|215031 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

 Score =  600 bits (1550), Expect = 0.0
 Identities = 235/287 (81%), Positives = 255/287 (88%), Gaps = 3/287 (1%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDK+ VHI KNF++LPNIKVPLILGIWGGKGQGKSFQCELVF KMGI PI+MSAGELES 
Sbjct: 128 MDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187

Query: 61  NAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 119
           NAGEP KLIRQRYREAADII KKGKM CL INDLDAGAGR G TTQYTVNNQMVN TLMN
Sbjct: 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMVNGTLMN 246

Query: 120 IADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 178
           IADNPT V L G +  KEE PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV
Sbjct: 247 IADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 306

Query: 179 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN 238
             GIFR+D V+ +D+VKLVDTFPGQ +DFFGALRARVYDDEVRKWI+ VGV ++GK LVN
Sbjct: 307 VHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVN 366

Query: 239 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 285
           SK+  PTFE P+MT+EKLLEYGNM+V+EQENVKRVQL+D+YL  AAL
Sbjct: 367 SKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKRVQLSDEYLKNAAL 413

Length = 413

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 26  IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
           ++G  G GK+   + V  ++G   I +S  EL S   GE  K +R+ +  A    KK   
Sbjct: 3   LYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAA----KKLAP 58

Query: 86  CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
           C + I+++DA AG  G         + V   L+   D  T              +V +I 
Sbjct: 59  CVIFIDEIDALAGSRGSGGDSES--RRVVNQLLTELDGFT----------SSLSKVIVIA 106

Query: 146 TGNDFSTLYAPLIRDGRMEKFYWAP 170
             N    L   L+R GR ++    P
Sbjct: 107 ATNRPDKLDPALLR-GRFDRIIEFP 130

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 18/168 (10%)

Query: 26  IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
           ++G  G GK+   + V  + G N I +   E+ S   GE  K IR+ +R+A    ++   
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 547

Query: 86  CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             +  +++DA A   G     +V +++VN  L          ++ G+   +E   V +I 
Sbjct: 548 AIIFFDEIDAIAPARGARFDTSVTDRIVNQLL---------TEMDGI---QELSNVVVIA 595

Query: 146 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD 191
             N    L   L+R GR ++      P  E R  + K   R+  +A+D
Sbjct: 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED 643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 17  NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 76
            ++ P  + ++G  G GK+   + V  +     I +   EL S   GE  K IR+ + +A
Sbjct: 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA 331

Query: 77  ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 122
               +K     + I+++D+ A   G +     + + V   L+   D
Sbjct: 332 ----RKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELD 371

Length = 494

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	100.0
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0736	953	consensus Peroxisome assembly factor 2 containing	100.0
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	100.0
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	100.0
CHL00195	489	ycf46 Ycf46; Provisional	100.0
CHL00206	2281	ycf2 Ycf2; Provisional	100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	100.0
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	100.0
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	100.0
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	100.0
CHL00176	638	ftsH cell division protein; Validated	99.98
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.98
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.98
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.98
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.97
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.97
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.97
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.96
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.96
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.95
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.95
PF00004	132	AAA: ATPase family associated with various cellula	99.91
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.89
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.84
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.83
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.82
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.81
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.77
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.75
CHL00181	287	cbbX CbbX; Provisional	99.73
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.72
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.72
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.71
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.7
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.66
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.65
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.59
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.58
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.56
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.56
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.56
PRK10865	857	protein disaggregation chaperone; Provisional	99.56
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.56
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.54
CHL00095	821	clpC Clp protease ATP binding subunit	99.53
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.53
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.5
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.49
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.47
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.47
PRK04195	482	replication factor C large subunit; Provisional	99.46
PRK13342	413	recombination factor protein RarA; Reviewed	99.44
PHA02544	316	44 clamp loader, small subunit; Provisional	99.44
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.43
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.43
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.43
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.41
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.4
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.4
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.4
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.39
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.38
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.38
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.38
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.37
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.36
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.36
PLN03025	319	replication factor C subunit; Provisional	99.36
PRK06893	229	DNA replication initiation factor; Validated	99.35
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.34
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.34
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.33
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.32
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.32
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.32
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.32
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.3
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.29
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.29
PRK12422	445	chromosomal replication initiation protein; Provis	99.29
PRK12402	337	replication factor C small subunit 2; Reviewed	99.28
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.28
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.28
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.28
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.28
smart00382	148	AAA ATPases associated with a variety of cellular	99.27
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.27
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.26
PRK13341	725	recombination factor protein RarA/unknown domain f	99.26
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.25
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	99.25
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.25
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.24
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.23
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.23
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.23
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.22
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.22
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.22
COG0714	329	MoxR-like ATPases [General function prediction onl	99.21
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.21
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.2
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.2
PRK05642	234	DNA replication initiation factor; Validated	99.19
PRK08084	235	DNA replication initiation factor; Provisional	99.19
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.19
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.18
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.17
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.17
PRK10865	857	protein disaggregation chaperone; Provisional	99.16
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.16
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.16
KOG2028	554	consensus ATPase related to the helicase subunit o	99.15
CHL00095	821	clpC Clp protease ATP binding subunit	99.15
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.15
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.14
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.13
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.13
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.13
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.12
PRK08727	233	hypothetical protein; Validated	99.12
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.12
PHA02244	383	ATPase-like protein	99.12
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.11
PRK06620	214	hypothetical protein; Validated	99.1
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.1
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.08
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.07
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.06
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.06
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.06
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.05
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.05
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.02
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.01
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.99
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.98
PRK08116	268	hypothetical protein; Validated	98.96
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.94
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	98.93
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.92
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.91
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.89
PRK09087	226	hypothetical protein; Validated	98.89
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.89
smart00350	509	MCM minichromosome maintenance proteins.	98.86
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	98.85
PRK12377	248	putative replication protein; Provisional	98.84
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	98.83
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.83
PF07726	131	AAA_3: ATPase family associated with various cellu	98.83
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.83
PRK04132	846	replication factor C small subunit; Provisional	98.82
PRK08181	269	transposase; Validated	98.8
PRK07952	244	DNA replication protein DnaC; Validated	98.8
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	98.8
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.77
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.76
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.75
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.75
PRK06526	254	transposase; Provisional	98.74
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.74
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.71
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.7
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.69
PRK08939	306	primosomal protein DnaI; Reviewed	98.69
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	98.68
PRK06921	266	hypothetical protein; Provisional	98.67
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.67
PRK06835	329	DNA replication protein DnaC; Validated	98.67
PRK13531	498	regulatory ATPase RavA; Provisional	98.66
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.66
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.65
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.64
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.63
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.62
PRK11608	326	pspF phage shock protein operon transcriptional ac	98.61
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.58
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.57
PRK09183	259	transposase/IS protein; Provisional	98.57
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.56
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	98.51
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.51
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.5
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	98.49
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.49
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	98.48
PRK15424	538	propionate catabolism operon regulatory protein Pr	98.44
PF13173	128	AAA_14: AAA domain	98.44
PRK05022	509	anaerobic nitric oxide reductase transcription reg	98.44
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.43
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.41
PF05729	166	NACHT: NACHT domain	98.4
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.39
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	98.38
KOG1514	767	consensus Origin recognition complex, subunit 1, a	98.38
COG1221	403	PspF Transcriptional regulators containing an AAA-	98.38
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.36
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	98.35
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	98.35
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	98.33
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	98.32
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.32
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.32
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.3
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	98.28
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.26
PRK09862	506	putative ATP-dependent protease; Provisional	98.25
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	98.25
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.23
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.23
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.23
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.22
PRK15115	444	response regulator GlrR; Provisional	98.18
PHA02624	647	large T antigen; Provisional	98.18
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.18
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.13
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.12
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.12
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.12
PHA02774	613	E1; Provisional	98.11
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.08
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	98.08
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.08
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	98.06
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	98.05
PHA00729	226	NTP-binding motif containing protein	98.03
PRK00131	175	aroK shikimate kinase; Reviewed	98.02
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	97.99
PRK09376	416	rho transcription termination factor Rho; Provisio	97.99
COG2204	464	AtoC Response regulator containing CheY-like recei	97.98
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.96
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	97.96
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	97.96
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.95
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	97.94
PRK08118	167	topology modulation protein; Reviewed	97.94
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.93
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.93
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.9
cd01128	249	rho_factor Transcription termination factor rho is	97.89
PRK07261	171	topology modulation protein; Provisional	97.89
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	97.89
PRK11823	446	DNA repair protein RadA; Provisional	97.88
PRK05917	290	DNA polymerase III subunit delta'; Validated	97.88
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.88
COG1485	367	Predicted ATPase [General function prediction only	97.87
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	97.86
PRK13947	171	shikimate kinase; Provisional	97.84
PRK06762	166	hypothetical protein; Provisional	97.83
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.81
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.8
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	97.79
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.78
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.78
PRK03839	180	putative kinase; Provisional	97.77
PRK06067	234	flagellar accessory protein FlaH; Validated	97.77
PRK07132	299	DNA polymerase III subunit delta'; Validated	97.75
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.75
PLN02200	234	adenylate kinase family protein	97.74
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.74
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	97.73
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.71
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.7
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.7
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.69
PRK00625	173	shikimate kinase; Provisional	97.69
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.69
PRK08233	182	hypothetical protein; Provisional	97.69
PRK10365	441	transcriptional regulatory protein ZraR; Provision	97.68
PRK14531	183	adenylate kinase; Provisional	97.67
PRK13695	174	putative NTPase; Provisional	97.67
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.67
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.66
PRK14532	188	adenylate kinase; Provisional	97.65
PHA02530	300	pseT polynucleotide kinase; Provisional	97.65
PRK06696	223	uridine kinase; Validated	97.65
PRK09354	349	recA recombinase A; Provisional	97.64
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.63
PRK07276	290	DNA polymerase III subunit delta'; Validated	97.63
PRK15455	644	PrkA family serine protein kinase; Provisional	97.62
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.62
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.6
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.6
PRK13948	182	shikimate kinase; Provisional	97.59
PRK14527	191	adenylate kinase; Provisional	97.59
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.59
PRK13949	169	shikimate kinase; Provisional	97.57
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	97.57
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.57
PTZ00088	229	adenylate kinase 1; Provisional	97.57
PRK05818	261	DNA polymerase III subunit delta'; Validated	97.56
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.56
PRK06547	172	hypothetical protein; Provisional	97.56
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.55
PRK06217	183	hypothetical protein; Validated	97.55
PRK04040	188	adenylate kinase; Provisional	97.54
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.53
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.53
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.53
COG1241	682	MCM2 Predicted ATPase involved in replication cont	97.52
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.52
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.51
PRK14530	215	adenylate kinase; Provisional	97.5
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.49
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.49
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.49
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.48
PRK04296	190	thymidine kinase; Provisional	97.48
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.47
TIGR00767	415	rho transcription termination factor Rho. Members	97.46
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.45
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.45
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.45
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.44
PRK14528	186	adenylate kinase; Provisional	97.43
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.43
PRK02496	184	adk adenylate kinase; Provisional	97.42
PRK05973	237	replicative DNA helicase; Provisional	97.42
PRK13946	184	shikimate kinase; Provisional	97.42
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.42
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.42
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.42
PRK03731	171	aroL shikimate kinase II; Reviewed	97.41
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.4
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.4
PRK00279	215	adk adenylate kinase; Reviewed	97.39
PRK12608	380	transcription termination factor Rho; Provisional	97.39
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.39
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.39
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.38
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.37
PRK01184	184	hypothetical protein; Provisional	97.37
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.36
PF13245	76	AAA_19: Part of AAA domain	97.35
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.34
PRK05057	172	aroK shikimate kinase I; Reviewed	97.34
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.34
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.33
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.33
KOG2383	467	consensus Predicted ATPase [General function predi	97.31
PLN02674	244	adenylate kinase	97.31
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	97.3
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.3
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.29
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.29
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.29
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.28
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	97.28
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	97.28
PRK04182	180	cytidylate kinase; Provisional	97.27
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.27
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.27
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.25
PRK05541	176	adenylylsulfate kinase; Provisional	97.23
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.22
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.22
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.22
PRK12339	197	2-phosphoglycerate kinase; Provisional	97.22
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.22
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.22
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.22
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.21
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.19
PRK14526	211	adenylate kinase; Provisional	97.19
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.19
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	97.19
PRK13764	602	ATPase; Provisional	97.16
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.15
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.15
PRK00889	175	adenylylsulfate kinase; Provisional	97.14
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.14
PRK14974	336	cell division protein FtsY; Provisional	97.13
COG4650	531	RtcR Sigma54-dependent transcription regulator con	97.13
PRK12338	319	hypothetical protein; Provisional	97.12
PRK03846	198	adenylylsulfate kinase; Provisional	97.12
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.1
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.09
PRK05480	209	uridine/cytidine kinase; Provisional	97.08
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.07
PRK04328	249	hypothetical protein; Provisional	97.07
PLN02459	261	probable adenylate kinase	97.07
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.06
PF14516	331	AAA_35: AAA-like domain	97.06
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.06
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.04
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.02
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.02
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.02
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.01
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	97.01
PRK09302	509	circadian clock protein KaiC; Reviewed	97.01
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	97.0
PRK14529	223	adenylate kinase; Provisional	97.0
PRK04841	903	transcriptional regulator MalT; Provisional	96.99
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.98
PTZ00202	550	tuzin; Provisional	96.98
PTZ00035	337	Rad51 protein; Provisional	96.98
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.97
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	96.97
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.97
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.96
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.96
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.96
PRK05439	311	pantothenate kinase; Provisional	96.95
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.94
PRK10867	433	signal recognition particle protein; Provisional	96.92
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	96.92
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.92
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	96.91
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.91
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	96.91
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.9
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.9
cd03239	178	ABC_SMC_head The structural maintenance of chromos	96.89
PRK07667	193	uridine kinase; Provisional	96.89
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.89
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.88
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	96.88
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	96.88
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	96.87
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.87
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	96.86
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	96.85
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.84
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.83
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.83
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.83
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.83
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	96.82
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.81
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.81
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	96.81
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.81
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.8
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.79
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.79
PLN02165	334	adenylate isopentenyltransferase	96.78
PRK13808	333	adenylate kinase; Provisional	96.78
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.78
PRK13851	344	type IV secretion system protein VirB11; Provision	96.78
PRK00300	205	gmk guanylate kinase; Provisional	96.78
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.77
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.77
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.76
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.76
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.75
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	96.75
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.75
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.74
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.73
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.73
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	96.73
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.72
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	96.71
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	96.71
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	96.71
COG0645	170	Predicted kinase [General function prediction only	96.71
PRK14730	195	coaE dephospho-CoA kinase; Provisional	96.71
PRK08356	195	hypothetical protein; Provisional	96.7
PRK13975	196	thymidylate kinase; Provisional	96.7
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.69
PRK14733	204	coaE dephospho-CoA kinase; Provisional	96.69
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.68
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.68
PRK14737	186	gmk guanylate kinase; Provisional	96.68
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.66
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.66
PRK10416	318	signal recognition particle-docking protein FtsY;	96.66
PRK00023	225	cmk cytidylate kinase; Provisional	96.65
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.64
PLN02199	303	shikimate kinase	96.63
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.62
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.62
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.61
PF02456	369	Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR	96.59
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.59
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	96.59
PRK06761	282	hypothetical protein; Provisional	96.58
COG0606	490	Predicted ATPase with chaperone activity [Posttran	96.57
PRK09825	176	idnK D-gluconate kinase; Provisional	96.56

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=100.00  E-value=4.7e-73  Score=541.21  Aligned_cols=284  Identities=83%  Similarity=1.307  Sum_probs=274.2

Q ss_pred             CchhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694            1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus         1 ~~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      |||+++||+|||+.++|+++|+|+|||||||||||++|+++|+++|++++.+++++|.++|+|+++++||++|+.|.+++
T Consensus       128 ~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a  207 (413)
T PLN00020        128 MDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADII  207 (413)
T ss_pred             HHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999997777


Q ss_pred             -HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-ccCCCCCceEEEEeCCCCCCcchhc
Q 019694           81 -KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLI  158 (337)
Q Consensus        81 -~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-~~~~~~~V~vI~TTN~~~~ld~aLl  158 (337)
                       ++++||||||||||+++++++ +++.+++++++.++||+++|+|++++++|.| ......+|+||+|||+|+.|||||+
T Consensus       208 ~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl  286 (413)
T PLN00020        208 KKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI  286 (413)
T ss_pred             hccCCCeEEEEehhhhcCCCCC-CCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence             478999999999999999887 6788899999999999999999999999998 5566789999999999999999999


Q ss_pred             cCCCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhc
Q 019694          159 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVN  238 (337)
Q Consensus       159 R~gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~  238 (337)
                      |+||||+++|+|+.++|.+|++.+++..+++..++.++++.|+||+||||||+|+++|+++|++||.++|.+++++.+++
T Consensus       287 RpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~  366 (413)
T PLN00020        287 RDGRMEKFYWAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVN  366 (413)
T ss_pred             CCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhchhcc
Q 019694          239 SKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL  285 (337)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~~~~~  285 (337)
                      +++++|.|++|.++++.|+++|++|++||++|.+++|+++||+++++
T Consensus       367 ~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~~~l~~~y~~~~~~  413 (413)
T PLN00020        367 SKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKRVQLSDEYLKNAAL  413 (413)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999653

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-50  Score=371.25  Aligned_cols=240  Identities=28%  Similarity=0.422  Sum_probs=209.3

Q ss_pred             CchhHHHHHhhhhcCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            1 MDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         1 ~~k~~~~i~k~~l~~~-g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +|++.+|+.+|+|..+ |+++|+|+|||||||||||++|++||..+|++|+.++.+.+.++|+||++++||++|..|   
T Consensus       145 re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA---  221 (388)
T KOG0651|consen  145 REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA---  221 (388)
T ss_pred             HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH---
Confidence            5899999999999976 999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                       +...|||||+||||++.+++.  ++.++++++++.|||++++     +|+|+   ...++|++|+|||+|+.|||||+|
T Consensus       222 -~~~~pciifmdeiDAigGRr~--se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlR  290 (388)
T KOG0651|consen  222 -REVIPCIIFMDEIDAIGGRRF--SEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLR  290 (388)
T ss_pred             -hhhCceEEeehhhhhhccEEe--ccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcC
Confidence             999999999999999999984  8899999999999999999     66666   888999999999999999999999


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhh
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLV  237 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~  237 (337)
                      |||+|+++|+  |+...|..|++                   |.++.|+|+|+++    ++++.+|.+..+...+-   .
T Consensus       291 pGRldrk~~iPlpne~~r~~I~K-------------------ih~~~i~~~Geid----~eaivK~~d~f~gad~r---n  344 (388)
T KOG0651|consen  291 PGRLDRKVEIPLPNEQARLGILK-------------------IHVQPIDFHGEID----DEAILKLVDGFNGADLR---N  344 (388)
T ss_pred             CccccceeccCCcchhhceeeEe-------------------ecccccccccccc----HHHHHHHHhccChHHHh---h
Confidence            9999999999  88888888664                   4445555555555    44555555554433311   1


Q ss_pred             cCcCCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhc
Q 019694          238 NSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS  281 (337)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~  281 (337)
                      ... ..|.|..+..+-+.++|++..+++||.++++.+++.+|++
T Consensus       345 ~~t-Eag~Fa~~~~~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~  387 (388)
T KOG0651|consen  345 VCT-EAGMFAIPEERDEVLHEDFMKLVRKQADAKKLELSLDYKK  387 (388)
T ss_pred             hcc-cccccccchhhHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            111 2357899999999999999999999999999999999984

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-48  Score=363.93  Aligned_cols=178  Identities=24%  Similarity=0.338  Sum_probs=167.8

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|++||||||||||||||||+||||||++.++.|+.+.+|+|..+|+|++++++|++|..|    +..+||||||||||
T Consensus       179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEID  254 (406)
T COG1222         179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEID  254 (406)
T ss_pred             HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechh
Confidence            56999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++++|.  ...+...+.++.|+|+|+.     +|+|+   .+..+|-||++||+++.||||||||||||+.|++  |+.
T Consensus       255 AIg~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~  324 (406)
T COG1222         255 AIGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE  324 (406)
T ss_pred             hhhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence            9998886  3345578899999999999     99999   8899999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhH
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~  206 (337)
                      +.|.+|++.|.++.    +++.+.++++++||+||+|.
T Consensus       325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk  362 (406)
T COG1222         325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK  362 (406)
T ss_pred             HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH
Confidence            99999999999876    55669999999999999986

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-43  Score=351.24  Aligned_cols=238  Identities=24%  Similarity=0.341  Sum_probs=190.4

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      ++..|+..|.|||||||||||||.||||+|++.|++|+.|.+.+|.++|+||+++.||++|.+|    +.++||||||||
T Consensus       537 ~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRA----R~saPCVIFFDE  612 (802)
T KOG0733|consen  537 FKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRA----RASAPCVIFFDE  612 (802)
T ss_pred             HHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHh----hcCCCeEEEecc
Confidence            3467999999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      ||+++++|+ .....+..+.++++|.         .|+|.   ..+.+|.||++||+|+.||||+|||||||+..++  |
T Consensus       613 iDaL~p~R~-~~~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP  679 (802)
T KOG0733|consen  613 IDALVPRRS-DEGSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP  679 (802)
T ss_pred             hhhcCcccC-CCCchhHHHHHHHHHH---------Hhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence            999999997 3446677778877763         44466   8889999999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccC------CCCCHHHHHHHhc--CCCchhhHhHHHHHhhhhHHHHHHHHHhhcCc--cchhhhhcCc
Q 019694          171 TREDRIGVCKGIFRN------DNVADDDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISGVGVG--SIGKSLVNSK  240 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~------~~l~~~~la~l~~--gf~gadl~~~~alra~~~~~~i~~~i~~~~~~--~~~~~~~~~~  240 (337)
                      +.++|.+|++.+++.      ..++.+.|++.+.  ||+|+||..   |.....-.++++-+.++...  .+..+     
T Consensus       680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa---LvreAsi~AL~~~~~~~~~~~~~~~~~-----  751 (802)
T KOG0733|consen  680 NAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA---LVREASILALRESLFEIDSSEDDVTVR-----  751 (802)
T ss_pred             CHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH---HHHHHHHHHHHHHHhhccccCccccee-----
Confidence            999999999999983      3566799999887  999999962   22222222344444433221  11110     


Q ss_pred             CCCCCCCCCcccHHHHHHHHHHH---HHHHhhhhhhhhHHHHh
Q 019694          241 EAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKYL  280 (337)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~g~~l---~~eq~~~~~~~l~~~~l  280 (337)
                           ..+..++..++-++...+   +.+++...+.+|.+.|=
T Consensus       752 -----~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~  789 (802)
T KOG0733|consen  752 -----SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS  789 (802)
T ss_pred             -----eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence                 012245556777776655   67888877878776654

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-44  Score=348.67  Aligned_cols=252  Identities=21%  Similarity=0.271  Sum_probs=197.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      .+|-+.||||||+||||||||+||||+|.+.+++|+..+++++...|+|...+.||++|..|    ++.+||||||||||
T Consensus       331 rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiD  406 (752)
T KOG0734|consen  331 RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEID  406 (752)
T ss_pred             hccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechh
Confidence            45889999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++.++|....+. ..+|.++|+|         +.|+|+   ..+.+|+||++||.|+.||+||+||||||+.+.+  |+.
T Consensus       407 avG~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv  473 (752)
T KOG0734|consen  407 AVGGKRNPSDQH-YAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV  473 (752)
T ss_pred             hhcccCCccHHH-HHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence            999888744433 5666777666         467788   7778999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccC----CCCCHHHHHHHhcCCCchhhHhHH---HHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCC
Q 019694          173 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFG---ALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT  245 (337)
Q Consensus       173 ~~R~~Il~~~~~~----~~l~~~~la~l~~gf~gadl~~~~---alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~  245 (337)
                      ..|.+|++.|+.+    .++|+.-||+-+.||+|+||++..   |++|++-.+.   -+.-...|..-.+++-..+....
T Consensus       474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~---~VtM~~LE~akDrIlMG~ERks~  550 (752)
T KOG0734|consen  474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE---MVTMKHLEFAKDRILMGPERKSM  550 (752)
T ss_pred             ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc---cccHHHHhhhhhheeeccccccc
Confidence            9999999988865    477889999999999999998652   2222211110   00001112222233322222333


Q ss_pred             C-CCCcccHHHHHHHHHHHHHH-HhhhhhhhhHHHHhchhccC
Q 019694          246 F-EQPRMTMEKLLEYGNMIVQE-QENVKRVQLADKYLSEAALG  286 (337)
Q Consensus       246 ~-~~~~~~~~~l~~~g~~l~~e-q~~~~~~~l~~~~l~~~~~~  286 (337)
                      + .....++.++||.||+++.- -+.....-.+....+|++||
T Consensus       551 ~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG  593 (752)
T KOG0734|consen  551 VIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLG  593 (752)
T ss_pred             ccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCcccc
Confidence            4 34467789999999998654 33334555567777887776

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-44  Score=347.66  Aligned_cols=305  Identities=18%  Similarity=0.296  Sum_probs=246.4

Q ss_pred             CchhHHHHHhhhhc----------CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCCccccCCCCChHHHH
Q 019694            1 MDKLVVHITKNFMS----------LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLI   69 (337)
Q Consensus         1 ~~k~~~~i~k~~l~----------~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s~l~~~~~Ge~~~~i   69 (337)
                      +|+=..+|.+..+.          ..|++..||||||||||||||.+||.|.+.++. +.-.+++.++.++|+|+++.+|
T Consensus       226 Ld~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~Nv  305 (744)
T KOG0741|consen  226 LDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENV  305 (744)
T ss_pred             chHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHH
Confidence            46667777777665          359999999999999999999999999999986 6889999999999999999999


Q ss_pred             HHHHHHHHHHHH----hcCceEEEecccccccccCCCCc-ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEE
Q 019694           70 RQRYREAADIIK----KGKMCCLMINDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII  144 (337)
Q Consensus        70 r~~f~~A~~~~~----~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI  144 (337)
                      |.+|..|.+.-+    ...-.||+|||||++|.+|+... ...+..+.++|+|.         .|+|.   +...+|+||
T Consensus       306 R~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVI  373 (744)
T KOG0741|consen  306 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVI  373 (744)
T ss_pred             HHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEE
Confidence            999999976666    44568999999999998776322 24566677776662         44465   778999999


Q ss_pred             EEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccC--------CCCCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694          145 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN--------DNVADDDIVKLVDTFPGQSIDFFGALRAR  214 (337)
Q Consensus       145 ~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~--------~~l~~~~la~l~~gf~gadl~~~~alra~  214 (337)
                      +.|||.+.||.||||||||+..+++  |+++.|++|++.|++.        .+++.++|+.+|..|+|++|+  |.+|++
T Consensus       374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA  451 (744)
T KOG0741|consen  374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSA  451 (744)
T ss_pred             eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHH
Confidence            9999999999999999999999999  9999999999888863        478889999999999999998  667766


Q ss_pred             hhHHHHHHHHHhh-----cCccchhhhhcC-------cCCCCCCCCCccc---------------HHHHHHHHHHHHHHH
Q 019694          215 VYDDEVRKWISGV-----GVGSIGKSLVNS-------KEAAPTFEQPRMT---------------MEKLLEYGNMIVQEQ  267 (337)
Q Consensus       215 ~~~~~i~~~i~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~---------------~~~l~~~g~~l~~eq  267 (337)
                      ..-+ +.+.++.-     ..+++...-+++       .+..|.|...+..               ...+++.|..++++-
T Consensus       452 ~S~A-~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qv  530 (744)
T KOG0741|consen  452 QSFA-MNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQV  530 (744)
T ss_pred             HHHH-HHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHh
Confidence            5543 33333332     122222222222       2346777665443               566778899999999


Q ss_pred             hhhhhhhhHHHHhchhccCCchhHHhhhcchhhhhhhhcCCCCCcCCCCccccCCCCCcc
Q 019694          268 ENVKRVQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR  327 (337)
Q Consensus       268 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (337)
                      ++..+..|+..++.|++..  |++||+     +++|..|+|||+|+|+|.+-.-|..+|+
T Consensus       531 k~s~~s~lvSvLl~Gp~~s--GKTaLA-----A~iA~~S~FPFvKiiSpe~miG~sEsaK  583 (744)
T KOG0741|consen  531 KNSERSPLVSVLLEGPPGS--GKTALA-----AKIALSSDFPFVKIISPEDMIGLSESAK  583 (744)
T ss_pred             hccccCcceEEEEecCCCC--ChHHHH-----HHHHhhcCCCeEEEeChHHccCccHHHH
Confidence            9999999999999999877  999999     9999999999999999998877766654

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-42  Score=342.26  Aligned_cols=175  Identities=25%  Similarity=0.428  Sum_probs=158.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+.+|||||||||||||||++||++|++++++|+.+++.+|.++|+|++++.|+++|++|    +..+||||||||||
T Consensus       462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA----R~~aP~IiFfDEiD  537 (693)
T KOG0730|consen  462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA----RQVAPCIIFFDEID  537 (693)
T ss_pred             HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH----hhcCCeEEehhhHH
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++++.|+|+.. .+..+.+++.| +.+|        |+   +...+|+||++||+|+.||+||+||||||+.+++  |+.
T Consensus       538 si~~~R~g~~~-~v~~RVlsqLL-tEmD--------G~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~  604 (693)
T KOG0730|consen  538 ALAGSRGGSSS-GVTDRVLSQLL-TEMD--------GL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL  604 (693)
T ss_pred             hHhhccCCCcc-chHHHHHHHHH-HHcc--------cc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence            99998874333 66666666544 3444        77   7778999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694          173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~  206 (337)
                      +.|.+|++.++++.+    ++.+.|++.|+||||++|.
T Consensus       605 ~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~  642 (693)
T KOG0730|consen  605 EARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV  642 (693)
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH
Confidence            999999999998764    4558999999999999985

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-41  Score=333.55  Aligned_cols=197  Identities=23%  Similarity=0.334  Sum_probs=166.8

Q ss_pred             hhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694           12 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        12 ~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      .+...|+.||+|||||||||||||+||+|+|.+++++|+.+++.++.+++.|++++.||++|++|    +..+|||||||
T Consensus       214 ~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A----~~~aPcivFiD  289 (802)
T KOG0733|consen  214 VFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA----KSNAPCIVFID  289 (802)
T ss_pred             hHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH----hccCCeEEEee
Confidence            34467999999999999999999999999999999999999999999999999999999999999    99999999999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      |||++.++|. ..+.....++|. .|++.+|        +..... ....|+||+|||+|+.|||||+|+||||+.|.+ 
T Consensus       290 eIDAI~pkRe-~aqreMErRiVa-QLlt~mD--------~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~  359 (802)
T KOG0733|consen  290 EIDAITPKRE-EAQREMERRIVA-QLLTSMD--------ELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLG  359 (802)
T ss_pred             cccccccchh-hHHHHHHHHHHH-HHHHhhh--------cccccccCCCCeEEEecCCCCcccCHHHhccccccceeeec
Confidence            9999999987 355555555554 5556666        332222 246799999999999999999999999999998 


Q ss_pred             -CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694          170 -PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS  225 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~  225 (337)
                       |+..+|.+|++.+.++.    +++...||++|.||+|+||.   ||......-+|++.+.
T Consensus       360 vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld  417 (802)
T KOG0733|consen  360 VPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILD  417 (802)
T ss_pred             CCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhh
Confidence             99999999999988754    56679999999999999996   4444333344665554

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-40  Score=334.21  Aligned_cols=240  Identities=21%  Similarity=0.332  Sum_probs=196.8

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++..|||||||||||||.+|||||.++.++|++|.+.+|.++|+|+++.++|++|++|    +..+||||||||+|
T Consensus       699 ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerA----R~A~PCVIFFDELD  774 (953)
T KOG0736|consen  699 SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERA----RSAAPCVIFFDELD  774 (953)
T ss_pred             hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHh----hccCCeEEEecccc
Confidence            45889999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCC-CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-C--
Q 019694           95 AGAGRMGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-P--  170 (337)
Q Consensus        95 ~l~~~~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P--  170 (337)
                      ++++.||. +..+.+..+.|.|.|.+         +||+.+. ....|+||++||||+.|||||+||||||+.+|+ |  
T Consensus       775 SlAP~RG~sGDSGGVMDRVVSQLLAE---------LDgls~~-~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~  844 (953)
T KOG0736|consen  775 SLAPNRGRSGDSGGVMDRVVSQLLAE---------LDGLSDS-SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE  844 (953)
T ss_pred             ccCccCCCCCCccccHHHHHHHHHHH---------hhcccCC-CCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Confidence            99988863 45577888888877743         3466332 678899999999999999999999999999999 4  


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHh-cCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCC
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLV-DTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPT  245 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~-~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~  245 (337)
                      +.+.+..|+++.+++.    +++..+|++.+ ..|+|||+   .++++.++-.++++-++.+....+..     .  .-.
T Consensus       845 d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~l~AikR~i~~ie~g~~~~-----~--e~~  914 (953)
T KOG0736|consen  845 DAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAMLAAIKRTIHDIESGTISE-----E--EQE  914 (953)
T ss_pred             cHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHHHHHHHHHHHHhhhccccc-----c--ccC
Confidence            5566889999888765    55557888776 58999997   58888888888888888876554443     0  011


Q ss_pred             CCCCcccHHHHHHHHHHH---HHHHhhhhhhhhHHH
Q 019694          246 FEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADK  278 (337)
Q Consensus       246 ~~~~~~~~~~l~~~g~~l---~~eq~~~~~~~l~~~  278 (337)
                      -....++.++++++...+   +.|||...+..+..+
T Consensus       915 ~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~  950 (953)
T KOG0736|consen  915 SSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQ  950 (953)
T ss_pred             CceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHh
Confidence            123467789999998876   566666655554443

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-39  Score=322.71  Aligned_cols=258  Identities=21%  Similarity=0.239  Sum_probs=204.3

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.+.|+|+||+||||||||+||+++|.+.++||+.+|+|++...++|-+.+.+|++|.+|    ++.+||||||||||
T Consensus       177 ~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiD  252 (596)
T COG0465         177 ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEID  252 (596)
T ss_pred             hcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhh
Confidence            34779999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++...|+-+  ....+....|+|-+++     ++|+|+   ..+..|+||++||+++-+|+||+||||||+.+.+  |+.
T Consensus       253 AvGr~Rg~g--~GggnderEQTLNQlL-----vEmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi  322 (596)
T COG0465         253 AVGRQRGAG--LGGGNDEREQTLNQLL-----VEMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDI  322 (596)
T ss_pred             hcccccCCC--CCCCchHHHHHHHHHH-----hhhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcch
Confidence            998777511  1222334444443333     478888   5678999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCC-CCC
Q 019694          173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFE  247 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~~~  247 (337)
                      ..|.+|++.|.+...    ++...+++.+.||+|+|+.......+......-+.|+...+++....+++....+.+ .+.
T Consensus       323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vis  402 (596)
T COG0465         323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVIS  402 (596)
T ss_pred             hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccC
Confidence            999999999987664    456889999999999999865332222222222345555566655566665555444 477


Q ss_pred             CCcccHHHHHHHHHHHHHHHhhh-hhhhhHHHHhchhccC
Q 019694          248 QPRMTMEKLLEYGNMIVQEQENV-KRVQLADKYLSEAALG  286 (337)
Q Consensus       248 ~~~~~~~~l~~~g~~l~~eq~~~-~~~~l~~~~l~~~~~~  286 (337)
                      ..+....++||+||+++..--.- ..+..+....+|.+||
T Consensus       403 e~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG  442 (596)
T COG0465         403 EAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALG  442 (596)
T ss_pred             hhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhc
Confidence            78889999999999998764333 3456667777776665

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-39  Score=328.14  Aligned_cols=251  Identities=20%  Similarity=0.263  Sum_probs=188.8

Q ss_pred             HHHHhhhhc--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694            6 VHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus         6 ~~i~k~~l~--~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      ++.+||..+  ..|+++|+|+||+||||||||+||||+|.+.|+||+.++++++...++|....++|++|..|    +..
T Consensus       327 V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~a----r~~  402 (774)
T KOG0731|consen  327 VKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLA----RKN  402 (774)
T ss_pred             HHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHh----hcc
Confidence            344455433  67999999999999999999999999999999999999999999999999999999999999    999


Q ss_pred             CceEEEecccccccccCCCC---cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           84 KMCCLMINDLDAGAGRMGGT---TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~---~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      +||||||||||+++..++|.   ...+...+.++|.|         ++|||+   .....|+|+++||+++.||+||+||
T Consensus       403 aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll---------~emDgf---~~~~~vi~~a~tnr~d~ld~allrp  470 (774)
T KOG0731|consen  403 APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL---------VEMDGF---ETSKGVIVLAATNRPDILDPALLRP  470 (774)
T ss_pred             CCeEEEecccccccccccccccCCCChHHHHHHHHHH---------HHhcCC---cCCCcEEEEeccCCccccCHHhcCC
Confidence            99999999999999887421   12222333444444         477788   6668899999999999999999999


Q ss_pred             CCceEEEeC--CCHHHHHHHHHHhccCCCCC-----HHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh---cCc
Q 019694          161 GRMEKFYWA--PTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV---GVG  230 (337)
Q Consensus       161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~-----~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~---~~~  230 (337)
                      ||||+.+.+  |+..+|.+|++.|.++.+++     ...|+.+|.||+|+||.+.-.-.+.   .+.|+-.+.+   .++
T Consensus       471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~---~a~r~~~~~i~~~~~~  547 (774)
T KOG0731|consen  471 GRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL---LAARKGLREIGTKDLE  547 (774)
T ss_pred             CccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH---HHHHhccCccchhhHH
Confidence            999999999  99999999999999877663     3569999999999999864221111   1122222222   223


Q ss_pred             cchhhhhcCcCCCCCC-CCCcccHHHHHHHHHHHHH----HHhhhhhhhh
Q 019694          231 SIGKSLVNSKEAAPTF-EQPRMTMEKLLEYGNMIVQ----EQENVKRVQL  275 (337)
Q Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~l~~----eq~~~~~~~l  275 (337)
                      ...++++......+.. ...+...-+.||+||++++    .++++.++.+
T Consensus       548 ~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsI  597 (774)
T KOG0731|consen  548 YAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSI  597 (774)
T ss_pred             HHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEe
Confidence            3333333333333322 3335567799999999877    3444444444

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-37  Score=306.65  Aligned_cols=200  Identities=20%  Similarity=0.312  Sum_probs=175.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ...++.+.|||||||||||||.||.++|..+++.|+.+.+.+|.++|+|.++..+|.+|.+|    +..+||||||||+|
T Consensus       695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfd  770 (952)
T KOG0735|consen  695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFD  770 (952)
T ss_pred             hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccc
Confidence            34788999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++++|| .....+..+.++|+|.         +|+|.   +...+|.|+++|.||+.|||||+||||+|+.++.  |+.
T Consensus       771 SiAPkRG-hDsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~  837 (952)
T KOG0735|consen  771 SIAPKRG-HDSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE  837 (952)
T ss_pred             ccCcccC-CCCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence            9999997 5666788888888773         44465   6678999999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhcc----CCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchh
Q 019694          173 EDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK  234 (337)
Q Consensus       173 ~~R~~Il~~~~~----~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~  234 (337)
                      .+|.+|++.+..    ...++.+.++..|+||+|+||.   ++.-...-.++++|+.+.+.+....
T Consensus       838 ~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~p  900 (952)
T KOG0735|consen  838 PERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVVP  900 (952)
T ss_pred             HHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccCC
Confidence            999999887764    4477789999999999999996   4444444566889999888665544

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-37  Score=279.65  Aligned_cols=179  Identities=24%  Similarity=0.339  Sum_probs=160.3

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      +..|+.||+|+|||||||||||+||+|+|++....|+.+.+|++..+|.|+..+.+|++|+.|    +.++|+|||||||
T Consensus       182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei  257 (408)
T KOG0727|consen  182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI  257 (408)
T ss_pred             HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence            356999999999999999999999999999999999999999999999999999999999999    9999999999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      |+++.+|-  ...+...+.++..|+++++     +|+|+   ....+|-||++||+.+.|||||+||||+|+.|++  |+
T Consensus       258 daiatkrf--daqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd  327 (408)
T KOG0727|consen  258 DAIATKRF--DAQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD  327 (408)
T ss_pred             hhHhhhhc--cccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence            99997765  2345567788889999998     88898   7778999999999999999999999999999999  88


Q ss_pred             HHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhH
Q 019694          172 REDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~  206 (337)
                      +.++.-++..+..+.++    +.+++...-+..+|++|.
T Consensus       328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~  366 (408)
T KOG0727|consen  328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN  366 (408)
T ss_pred             hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH
Confidence            88888888777776655    456777777889999885

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-36  Score=286.05  Aligned_cols=198  Identities=23%  Similarity=0.302  Sum_probs=164.1

Q ss_pred             CCCCC-cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           17 NIKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        17 g~~~p-~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      |++.| ||||++||||||||+||+|||.+++..||.|+.+.+.++|-|+++++||-+|+.|    +..+|++|||||||+
T Consensus       240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemA----RfyAPStIFiDEIDs  315 (491)
T KOG0738|consen  240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMA----RFYAPSTIFIDEIDS  315 (491)
T ss_pred             hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHH----HHhCCceeehhhHHH
Confidence            66555 9999999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCC-CCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~-~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++++|++++++ ..++.+.+-|+..+|        |.-.... ...|+|+++||.|+.||.||+|  ||++.|++  |+.
T Consensus       316 lcs~RG~s~EH-EaSRRvKsELLvQmD--------G~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~  384 (491)
T KOG0738|consen  316 LCSQRGGSSEH-EASRRVKSELLVQMD--------GVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA  384 (491)
T ss_pred             HHhcCCCccch-hHHHHHHHHHHHHhh--------ccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence            99999855444 445556666655555        6633333 3558999999999999999999  99999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccc
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI  232 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~  232 (337)
                      +.|..+++..++..    .++.++|+..++||+|+||..   ++.......+|+.+..+..+.+
T Consensus       385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n---vCreAsm~~mRR~i~g~~~~ei  445 (491)
T KOG0738|consen  385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN---VCREASMMAMRRKIAGLTPREI  445 (491)
T ss_pred             HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHH---HHHHHHHHHHHHHHhcCCcHHh
Confidence            99999999888754    556699999999999999964   3333333456777666554433

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-36  Score=273.58  Aligned_cols=180  Identities=20%  Similarity=0.312  Sum_probs=161.5

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      +...|+..|+|+|||||||||||.||+++|.+..+.|+.+|+++|..+|+|+..+.+|++|-.|    +.++|+|||+||
T Consensus       173 F~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmde  248 (404)
T KOG0728|consen  173 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDE  248 (404)
T ss_pred             HHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeec
Confidence            3467999999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      ||++.+.|.+++  ......++.+.+++++     +++|+   +...++-||++||+.+-|||||+||||+|+.|++  |
T Consensus       249 idsigs~r~e~~--~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p  318 (404)
T KOG0728|consen  249 IDSIGSSRVESG--SGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP  318 (404)
T ss_pred             ccccccccccCC--CCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence            999997765222  1234567777778877     77798   8889999999999999999999999999999999  8


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhH
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~  206 (337)
                      +.+.|.+|++.|.++.    +++...++....|.+|+++.
T Consensus       319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk  358 (404)
T KOG0728|consen  319 NEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK  358 (404)
T ss_pred             CHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh
Confidence            9999999999998876    56678999999999998875

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=276.76  Aligned_cols=179  Identities=23%  Similarity=0.342  Sum_probs=163.1

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ...|++||+|+|+|||||||||++|||+|.+.+..|+.+.+..|...|+|+..+++|+.|.-|    +..+|+||||||+
T Consensus       198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDEl  273 (424)
T KOG0652|consen  198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDEL  273 (424)
T ss_pred             HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEech
Confidence            357999999999999999999999999999999999999999999999999999999999999    9999999999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      |++..+|.++  .....+.++.+++++++     +++|+   .+..+|-||++||+.+.|||||+|.||+|+.|++  |+
T Consensus       274 DAIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn  343 (424)
T KOG0652|consen  274 DAIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN  343 (424)
T ss_pred             hhhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence            9999877632  33456778888888888     78898   7888999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhH
Q 019694          172 REDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~  206 (337)
                      .+.|..|++.|.++.++    +.+++++-+++|.|+...
T Consensus       344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK  382 (424)
T KOG0652|consen  344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK  382 (424)
T ss_pred             hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence            99999999999987654    569999999999997754

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=277.35  Aligned_cols=178  Identities=22%  Similarity=0.329  Sum_probs=159.5

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      .+|+.||+|||||||||||||.+|+|+|+..+..|+.+-+|+|..+|+|+..+.+|++|+.|    +..+-|||||||||
T Consensus       205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeid  280 (435)
T KOG0729|consen  205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID  280 (435)
T ss_pred             hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeeccc
Confidence            46999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++.+.|-+..  ....-.++.++++++.     +++|+   ..++++-|+++||+|+.|||||+||||+|+.+++  |+.
T Consensus       281 aiggarfddg--~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl  350 (435)
T KOG0729|consen  281 AIGGARFDDG--AGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL  350 (435)
T ss_pred             cccCccccCC--CCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence            9987664211  1123356677777777     77798   8899999999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694          173 EDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID  206 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~  206 (337)
                      +.|..|++.|.+...+.    .+-+++++..-+|++|.
T Consensus       351 egrt~i~kihaksmsverdir~ellarlcpnstgaeir  388 (435)
T KOG0729|consen  351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR  388 (435)
T ss_pred             cccceeEEEeccccccccchhHHHHHhhCCCCcchHHH
Confidence            99999999999877554    48899999999999885

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-36  Score=280.01  Aligned_cols=179  Identities=21%  Similarity=0.322  Sum_probs=162.5

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+||+|||+||||||.||+|+|++..+.|+.+-+++|..+|.|+..+++|++|+.|    ...+|+|+||||||
T Consensus       213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId  288 (440)
T KOG0726|consen  213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID  288 (440)
T ss_pred             HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++..+|.++  .+...+.++++++++++     +++|+   ..++.|-||++||+.+.|||||+||||+|+.|++  |+.
T Consensus       289 AiGtKRyds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe  358 (440)
T KOG0726|consen  289 AIGTKRYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE  358 (440)
T ss_pred             hhccccccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence            999887632  33456788888889988     88899   7789999999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      ..+..|+..|....    .++.+.+...-+.|+|+||..
T Consensus       359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA  397 (440)
T KOG0726|consen  359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA  397 (440)
T ss_pred             hhhceeEEEeecccchhccccHHHHhhcccccccccHHH
Confidence            99999998888765    555678877889999999963

>CHL00195 ycf46 Ycf46; Provisional

Probab=100.00  E-value=3e-34  Score=288.34  Aligned_cols=175  Identities=22%  Similarity=0.345  Sum_probs=150.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+++|++++.+++.++.+.+.++|+|++++.++++|..|    +..+||||||||||
T Consensus       253 ~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID  328 (489)
T CHL00195        253 NYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEID  328 (489)
T ss_pred             hcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhh
Confidence            35889999999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++.++.+.......++.+.. ++..++             ....+|+||+|||+++.||++++|+||||+.+++  |+.
T Consensus       329 ~~~~~~~~~~d~~~~~rvl~~-lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~  394 (489)
T CHL00195        329 KAFSNSESKGDSGTTNRVLAT-FITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL  394 (489)
T ss_pred             hhhccccCCCCchHHHHHHHH-HHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence            998654322333344455543 334444             2346799999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC------CCCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~------~l~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.++.+.      +.+.+.+++.++||+|+||+.
T Consensus       395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~  435 (489)
T CHL00195        395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ  435 (489)
T ss_pred             HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence            99999999998764      445689999999999999973

>CHL00206 ycf2 Ycf2; Provisional

Probab=100.00  E-value=3.3e-34  Score=312.28  Aligned_cols=176  Identities=9%  Similarity=0.037  Sum_probs=139.8

Q ss_pred             hhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCC----------CC------------------
Q 019694           12 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG------------------   63 (337)
Q Consensus        12 ~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~----------~G------------------   63 (337)
                      +....|+++|+||||+||||||||+||+|+|.+++++|+.++++++.+++          +|                  
T Consensus      1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206       1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred             HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence            33456899999999999999999999999999999999999999998654          12                  


Q ss_pred             -------------ChH--HHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCcccc
Q 019694           64 -------------EPA--KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ  128 (337)
Q Consensus        64 -------------e~~--~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~  128 (337)
                                   ..+  ..|+.+|+.|    ++.+||||||||||+++.+..   .     ......|++.+|      
T Consensus      1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds---~-----~ltL~qLLneLD------ 1762 (2281)
T CHL00206       1701 LLTMMNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES---N-----YLSLGLLVNSLS------ 1762 (2281)
T ss_pred             hhhhcchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc---c-----eehHHHHHHHhc------
Confidence                         222  2378889999    999999999999999986521   1     111234445555      


Q ss_pred             CCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc-------cCCCCCHHHHHHHhcC
Q 019694          129 LPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF-------RNDNVADDDIVKLVDT  199 (337)
Q Consensus       129 ~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~-------~~~~l~~~~la~l~~g  199 (337)
                        |........+|+||||||+|+.|||||+||||||+.|++  |+..+|.+++..+.       ....++.+.+|+.|.|
T Consensus      1763 --g~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206       1763 --RDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred             --cccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence              442223457899999999999999999999999999999  89989988876432       2223567899999999


Q ss_pred             CCchhhHh
Q 019694          200 FPGQSIDF  207 (337)
Q Consensus       200 f~gadl~~  207 (337)
                      |+||||..
T Consensus      1841 fSGADLan 1848 (2281)
T CHL00206       1841 SNARDLVA 1848 (2281)
T ss_pred             CCHHHHHH
Confidence            99999974

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-33  Score=285.43  Aligned_cols=175  Identities=24%  Similarity=0.398  Sum_probs=152.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      |+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++|+.+|..|    ++.+||||||||+|++
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs~  347 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDSL  347 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhhh
Confidence            789999999999999999999999999999999999999999999999999999999999    8999999999999999


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED  174 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~  174 (337)
                      +..++++. .....+.++ .|+..+|        |.   +...+|+||+|||+++.+|+|++||||||+.+++  |+.++
T Consensus       348 ~~~r~~~~-~~~~~r~~~-~lL~~~d--------~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~  414 (494)
T COG0464         348 ASGRGPSE-DGSGRRVVG-QLLTELD--------GI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE  414 (494)
T ss_pred             hccCCCCC-chHHHHHHH-HHHHHhc--------CC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence            98876322 222234444 4444444        44   6677899999999999999999999999999999  99999


Q ss_pred             HHHHHHHhccCC------CCCHHHHHHHhcCCCchhhHhH
Q 019694          175 RIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       175 R~~Il~~~~~~~------~l~~~~la~l~~gf~gadl~~~  208 (337)
                      |.+|++.++...      .++...+++++++|+|+||...
T Consensus       415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i  454 (494)
T COG0464         415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL  454 (494)
T ss_pred             HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence            999999999843      4566899999999999999743

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=100.00  E-value=6.6e-33  Score=292.64  Aligned_cols=177  Identities=26%  Similarity=0.396  Sum_probs=154.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|    +...||||||||||
T Consensus       481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid  556 (733)
T TIGR01243       481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID  556 (733)
T ss_pred             hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence            45889999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      ++++.+++........+.++++| ..+|        |.   ....+|+||+|||+++.||+|++||||||+.+++  |+.
T Consensus       557 ~l~~~r~~~~~~~~~~~~~~~lL-~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~  624 (733)
T TIGR01243       557 AIAPARGARFDTSVTDRIVNQLL-TEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE  624 (733)
T ss_pred             hhhccCCCCCCccHHHHHHHHHH-HHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence            99987763333334445555444 4444        44   4567899999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.+.+..+    ++.+.+++.++||+|+||..
T Consensus       625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~  663 (733)
T TIGR01243       625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA  663 (733)
T ss_pred             HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence            999999998887654    45689999999999999963

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-34  Score=265.41  Aligned_cols=173  Identities=21%  Similarity=0.295  Sum_probs=149.4

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      +.+|=+|||||||||||||.||+|+|.+.+-.|+++|.|+|.++|.|+++++++++|+.|    +.++|+||||||||++
T Consensus       162 kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDsl  237 (439)
T KOG0739|consen  162 KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSL  237 (439)
T ss_pred             CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhh
Confidence            555669999999999999999999999999999999999999999999999999999999    9999999999999999


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED  174 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~  174 (337)
                      +++++++ +.....++-..+|         |||.|.  .....+|+|+++||-|+.||.|++|  ||++.||+  |....
T Consensus       238 cg~r~en-EseasRRIKTEfL---------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~A  303 (439)
T KOG0739|consen  238 CGSRSEN-ESEASRRIKTEFL---------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA  303 (439)
T ss_pred             ccCCCCC-chHHHHHHHHHHH---------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHH
Confidence            9988733 2233334444444         466665  2456789999999999999999999  99999999  99999


Q ss_pred             HHHHHHHhccCCCC-----CHHHHHHHhcCCCchhhHh
Q 019694          175 RIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       175 R~~Il~~~~~~~~l-----~~~~la~l~~gf~gadl~~  207 (337)
                      |..+++.++.+...     +...+++.|+||+|+||..
T Consensus       304 R~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisi  341 (439)
T KOG0739|consen  304 RARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISI  341 (439)
T ss_pred             hhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEE
Confidence            99999999987633     3478999999999999964

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-33  Score=262.77  Aligned_cols=227  Identities=21%  Similarity=0.337  Sum_probs=173.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      -.++|+|||||||||||||++|+++|++.|..|+.++.+.+.++|.|+.+++++.+|..|    .+-+||||||||+|++
T Consensus       123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~  198 (386)
T KOG0737|consen  123 LLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSF  198 (386)
T ss_pred             cccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhh----hhcCcceeehhhHHHH
Confidence            357999999999999999999999999999999999999999999999999999999999    8999999999999999


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED  174 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~  174 (337)
                      ++.|+ ++++... .+...-+|.+.|        |.. .....+|+|+++||+|.+||.|++|  ||-+.+++  |+.++
T Consensus       199 L~~R~-s~dHEa~-a~mK~eFM~~WD--------Gl~-s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~q  265 (386)
T KOG0737|consen  199 LGQRR-STDHEAT-AMMKNEFMALWD--------GLS-SKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQ  265 (386)
T ss_pred             Hhhcc-cchHHHH-HHHHHHHHHHhc--------ccc-CCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhh
Confidence            98774 4554444 444445555666        552 2334569999999999999999999  99999998  99999


Q ss_pred             HHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh-cCccchhhhhcCcCCCC---CC
Q 019694          175 RIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-GVGSIGKSLVNSKEAAP---TF  246 (337)
Q Consensus       175 R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~-~~~~~~~~~~~~~~~~~---~~  246 (337)
                      |.+|++.+++..++    +...++++|+||+|+||...  .|.+.+ ..+|.++..- +.....+.+......++   ..
T Consensus       266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkel--C~~Aa~-~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~  342 (386)
T KOG0737|consen  266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKEL--CRLAAL-RPIRELLVSETGLLDLDKAIADLKPTQAAASSC  342 (386)
T ss_pred             HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHH--HHHHhH-hHHHHHHHhcccchhhhhhhhhccCCccccccc
Confidence            99999999987655    56999999999999999743  222222 2356666552 21111111111111111   12


Q ss_pred             CCCcccHHHHHHHHHHH
Q 019694          247 EQPRMTMEKLLEYGNMI  263 (337)
Q Consensus       247 ~~~~~~~~~l~~~g~~l  263 (337)
                      .-..+..++|+.+-+.+
T Consensus       343 ~~r~l~~eDf~~a~~~v  359 (386)
T KOG0737|consen  343 LLRPLEQEDFPKAINRV  359 (386)
T ss_pred             ccCcccHHHHHHHHHhh
Confidence            23467788888887644

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=270.75  Aligned_cols=181  Identities=21%  Similarity=0.310  Sum_probs=151.0

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      +...|+.+|+|+|||||||||||++|+++|++++.+++.+.++++.++|+|++++.++++|..|    +..+|+||||||
T Consensus       171 ~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A----~~~~P~ILfIDE  246 (398)
T PTZ00454        171 YEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLA----RENAPSIIFIDE  246 (398)
T ss_pred             HHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHH----HhcCCeEEEEEC
Confidence            3456899999999999999999999999999999999999999999999999999999999999    889999999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      ||+++.++.+...  .....+...+++++.     .+++.   ....++.||+|||+++.||++++|+||||+.|++  |
T Consensus       247 ID~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P  316 (398)
T PTZ00454        247 VDSIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP  316 (398)
T ss_pred             HhhhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence            9999876542111  111223334444443     23344   3456899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++...+    ++...+++.++||+|+||..
T Consensus       317 ~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~  357 (398)
T PTZ00454        317 DRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA  357 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence            99999999999987654    45689999999999999863

>TIGR03689 pup_AAA proteasome ATPase

Probab=100.00  E-value=9.9e-32  Score=270.33  Aligned_cols=251  Identities=18%  Similarity=0.238  Sum_probs=182.3

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC----------cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~----------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      ...|+++|+|+|||||||||||++|+++|++++.+          |+.++++++.++|+|++++.++.+|..|.+.+..+
T Consensus       209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g  288 (512)
T TIGR03689       209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDG  288 (512)
T ss_pred             HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcC
Confidence            35689999999999999999999999999998654          66788889999999999999999999997666677


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      .|+||||||+|+++.+++.+.........++ .|++.+|        |.   ...++|+||+|||+++.||+||+|||||
T Consensus       289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~-~LL~~LD--------gl---~~~~~ViVI~ATN~~d~LDpALlRpGRf  356 (512)
T TIGR03689       289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVP-QLLSELD--------GV---ESLDNVIVIGASNREDMIDPAILRPGRL  356 (512)
T ss_pred             CCceEEEehhhhhhcccCCCccchHHHHHHH-HHHHHhc--------cc---ccCCceEEEeccCChhhCCHhhcCcccc
Confidence            8999999999999977653222233334443 4445555        54   4457899999999999999999999999


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccCC-CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHH-----HHHHHHh---------
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDFFGALRARVYDDE-----VRKWISG---------  226 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~~-~l~~~~la~l~~gf~gadl~~~~alra~~~~~~-----i~~~i~~---------  226 (337)
                      |+.|++  |+.++|.+|++.++... .+ ..++ ....|++++++..+   ....++..     .+.+++.         
T Consensus       357 D~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l-~~~~g~~~a~~~al---~~~av~~~~a~~~~~~~l~~~~~~g~~~~  431 (512)
T TIGR03689       357 DVKIRIERPDAEAAADIFSKYLTDSLPL-DADL-AEFDGDREATAAAL---IQRAVDHLYATSEENRYVEVTYANGSTEV  431 (512)
T ss_pred             ceEEEeCCCCHHHHHHHHHHHhhccCCc-hHHH-HHhcCCCHHHHHHH---HHHHHHHHhhhhcccceeEEEecCCceee
Confidence            999999  99999999999998653 33 3444 44689999888633   22222111     1111111         


Q ss_pred             -----hcCccchhhhhcCcCC--C---CCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHHHHhc
Q 019694          227 -----VGVGSIGKSLVNSKEA--A---PTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLS  281 (337)
Q Consensus       227 -----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~~~l~  281 (337)
                           .-++.+.+.+|.+...  .   -.-....+++++|+.+...-..|.+......-.++|.+
T Consensus       432 l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~  496 (512)
T TIGR03689       432 LYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWAR  496 (512)
T ss_pred             EeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhh
Confidence                 1122333333333210  0   01123477889999998888888888888888888855

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>CHL00176 ftsH cell division protein; Validated

Probab=99.98  E-value=1.9e-32  Score=283.05  Aligned_cols=236  Identities=21%  Similarity=0.296  Sum_probs=169.8

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+|+||+||||||||++|+++|.+++.+++.++++++.+.+.|.....++.+|..|    +...||||||||||
T Consensus       210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID  285 (638)
T CHL00176        210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEID  285 (638)
T ss_pred             hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecch
Confidence            34788999999999999999999999999999999999999999999998888999999999    88999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++.+++.+...  .+....++|..++.     .+++.   ....+|+||+|||+++.+|++|+||||||+.+.+  |+.
T Consensus       286 ~l~~~r~~~~~~--~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~  355 (638)
T CHL00176        286 AVGRQRGAGIGG--GNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR  355 (638)
T ss_pred             hhhhcccCCCCC--CcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence            998665421111  11122233333333     23354   4457899999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccch---hhhhcCcCCCCC
Q 019694          173 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIG---KSLVNSKEAAPT  245 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~  245 (337)
                      ++|.+|++.+++...+    +...+++.+.||+|+||....  +.+... +.++--+.+..+.+.   .+++......+.
T Consensus       356 ~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv--neAal~-a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~  432 (638)
T CHL00176        356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL--NEAAIL-TARRKKATITMKEIDTAIDRVIAGLEGTPL  432 (638)
T ss_pred             HHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH--HHHHHH-HHHhCCCCcCHHHHHHHHHHHHhhhccCcc
Confidence            9999999999876543    347889999999999997431  111100 011100111111111   222211122222


Q ss_pred             CCCCcccHHHHHHHHHHHHHHH
Q 019694          246 FEQPRMTMEKLLEYGNMIVQEQ  267 (337)
Q Consensus       246 ~~~~~~~~~~l~~~g~~l~~eq  267 (337)
                      .........++||+||+++...
T Consensus       433 ~~~~~~~~vA~hEaGhA~v~~~  454 (638)
T CHL00176        433 EDSKNKRLIAYHEVGHAIVGTL  454 (638)
T ss_pred             ccHHHHHHHHHHhhhhHHHHhh
Confidence            2334566789999999998753

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.98  E-value=4.7e-32  Score=266.83  Aligned_cols=180  Identities=23%  Similarity=0.360  Sum_probs=152.5

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ...|+.+|+|||||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|    +...|+|||||||
T Consensus       158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEi  233 (389)
T PRK03992        158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEI  233 (389)
T ss_pred             HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEech
Confidence            356899999999999999999999999999999999999999999999999999999999999    8889999999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      |+++..+++..  ......+..+++.++.     .+++.   ....++.||+|||+++.+|++++||||||+.+++  |+
T Consensus       234 D~l~~~r~~~~--~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~  303 (389)
T PRK03992        234 DAIAAKRTDSG--TSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD  303 (389)
T ss_pred             hhhhcccccCC--CCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence            99987765221  1112233444555544     23343   4456899999999999999999999999999998  99


Q ss_pred             HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      .++|.+|++.++...    +++...++..++||+|+||..
T Consensus       304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~  343 (389)
T PRK03992        304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKA  343 (389)
T ss_pred             HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence            999999999998764    356689999999999999974

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.98  E-value=2.4e-32  Score=248.80  Aligned_cols=186  Identities=22%  Similarity=0.277  Sum_probs=155.0

Q ss_pred             hhHHHHHhhhhcCC---CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            3 KLVVHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         3 k~~~~i~k~~l~~~---g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      |..+.++..||..|   |-=.|+.||+|||||||||++|+|+|+++..+++.+++.+|.++++|+..+.|+++|.+|   
T Consensus       130 K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA---  206 (368)
T COG1223         130 KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA---  206 (368)
T ss_pred             HHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH---
Confidence            33455666777754   444699999999999999999999999999999999999999999999999999999999   


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                       ++.+|||+||||+|+++-.|.-.+-..-.+..++++| .-+|        |.   ..+.+|+.|++||+++.||+|+..
T Consensus       207 -~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALL-TelD--------gi---~eneGVvtIaaTN~p~~LD~aiRs  273 (368)
T COG1223         207 -RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALL-TELD--------GI---KENEGVVTIAATNRPELLDPAIRS  273 (368)
T ss_pred             -HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH-Hhcc--------Cc---ccCCceEEEeecCChhhcCHHHHh
Confidence             9999999999999999844321122223344555444 3333        55   678899999999999999999865


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID  206 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~  206 (337)
                        ||+..|++  |+.++|.+|++.+.++.++.    ...+++.+.||||.||.
T Consensus       274 --RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik  324 (368)
T COG1223         274 --RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK  324 (368)
T ss_pred             --hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence              99999988  99999999999999887554    48999999999999985

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.98  E-value=2.9e-32  Score=276.11  Aligned_cols=178  Identities=23%  Similarity=0.317  Sum_probs=149.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+|+|||||||||||++|+++|++++.+++.++++++.+.+.|..++.++.+|..|    +..+||||||||||
T Consensus        82 ~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid  157 (495)
T TIGR01241        82 KLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEID  157 (495)
T ss_pred             hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechh
Confidence            45789999999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++..++..  .......+.++++| ..+|        +.   ....+|+||+|||+++.||++++||||||+.+++  |
T Consensus       158 ~l~~~r~~~~~~~~~~~~~~~~~lL-~~~d--------~~---~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P  225 (495)
T TIGR01241       158 AVGRQRGAGLGGGNDEREQTLNQLL-VEMD--------GF---GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP  225 (495)
T ss_pred             hhhhccccCcCCccHHHHHHHHHHH-hhhc--------cc---cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence            998766421  11112233444333 3333        44   4456799999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhH
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~  208 (337)
                      +.++|.+|++.++....    ++...++..+.||+|+||...
T Consensus       226 d~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l  267 (495)
T TIGR01241       226 DIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL  267 (495)
T ss_pred             CHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence            99999999999987654    445899999999999999743

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.1e-31  Score=263.71  Aligned_cols=173  Identities=24%  Similarity=0.354  Sum_probs=156.1

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC-ceEEEeccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL   93 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~-p~Il~IDEi   93 (337)
                      ..|+++|+|+|+|||||||||+++++||++.++.++.++++++.+++.|++++++|..|++|    .+.+ |+|||||||
T Consensus       212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl  287 (693)
T KOG0730|consen  212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL  287 (693)
T ss_pred             hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence            46999999999999999999999999999999999999999999999999999999999999    8888 999999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      |++++++.+ ...  ....+.+.|+.++|        |+   ....+++||+|||+++.||+++.| ||||+.+.+  |+
T Consensus       288 d~l~p~r~~-~~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~  352 (693)
T KOG0730|consen  288 DALCPKREG-ADD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG  352 (693)
T ss_pred             hhhCCcccc-cch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence            999988863 222  34555667778888        55   467899999999999999999999 999999999  99


Q ss_pred             HHHHHHHHHHhccCCCCC----HHHHHHHhcCCCchhhH
Q 019694          172 REDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID  206 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l~----~~~la~l~~gf~gadl~  206 (337)
                      ..+|.+|++.+++..+..    ..+++..++||+|+||.
T Consensus       353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~  391 (693)
T KOG0730|consen  353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA  391 (693)
T ss_pred             chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH
Confidence            999999999999877554    48899999999999995

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.97  E-value=4.5e-31  Score=261.99  Aligned_cols=179  Identities=21%  Similarity=0.319  Sum_probs=149.6

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|.|+.++.++.+|..|    +...|+||||||||
T Consensus       211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID  286 (438)
T PTZ00361        211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID  286 (438)
T ss_pred             hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++.++.+...  ...+.+..++++++.     .++++   ....++.||+|||+++.||++++|+||||+.|++  |+.
T Consensus       287 ~l~~kR~~~~s--gg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~  356 (438)
T PTZ00361        287 AIGTKRYDATS--GGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE  356 (438)
T ss_pred             HHhccCCCCCC--cccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence            99876642111  111222333334433     22344   3456799999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.++...    +++.+.++..++||+|++|..
T Consensus       357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~  395 (438)
T PTZ00361        357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA  395 (438)
T ss_pred             HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence            99999999988655    456689999999999999864

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.97  E-value=2.1e-30  Score=269.54  Aligned_cols=178  Identities=22%  Similarity=0.291  Sum_probs=150.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..+.+.|+||||+||||||||++++++|++++.+|+.++++++.+.+.|.....++..|..|    +...||||||||||
T Consensus       179 ~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD  254 (644)
T PRK10733        179 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID  254 (644)
T ss_pred             hcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHh
Confidence            34678899999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++.+++...  ......+.++++| ..+|        ++   ....+|+||+|||+++.||++++||||||+.+++  |
T Consensus       255 ~l~~~r~~~~~g~~~~~~~~ln~lL-~~md--------g~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P  322 (644)
T PRK10733        255 AVGRQRGAGLGGGHDEREQTLNQML-VEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  322 (644)
T ss_pred             hhhhccCCCCCCCchHHHHHHHHHH-Hhhh--------cc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence            9987665211  1222234444444 2233        55   4457899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhH
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~  208 (337)
                      +.++|.+|++.+++...    ++...+++.+.||+|+||...
T Consensus       323 d~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l  364 (644)
T PRK10733        323 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL  364 (644)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence            99999999999997654    455789999999999999753

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.96  E-value=8.8e-30  Score=248.67  Aligned_cols=179  Identities=25%  Similarity=0.348  Sum_probs=148.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+.+|+|+|||||||||||++|+++|++++.+++.+.++++...+.|+....++..|..|    +...|+||||||+|
T Consensus       150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEiD  225 (364)
T TIGR01242       150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEID  225 (364)
T ss_pred             hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhhh
Confidence            56889999999999999999999999999999999999999999999999999999999988    88899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .++.++.+..  ......++.++++++.     .+++.   ...+++.||+|||+++.+|++++|+||||+.+++  |+.
T Consensus       226 ~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~  295 (364)
T TIGR01242       226 AIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF  295 (364)
T ss_pred             hhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence            9986654211  1112233344444443     22233   3456899999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.++....    ++...+++.++||+|+||..
T Consensus       296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~  334 (364)
T TIGR01242       296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA  334 (364)
T ss_pred             HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence            999999999886543    56789999999999999963

Many proteins may score above the trusted cutoff because an internal

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3e-29  Score=245.13  Aligned_cols=172  Identities=20%  Similarity=0.278  Sum_probs=149.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ..+++|+||.||||+|||+|+++||.|.++.|+.++++.|.++|+|+++++||.+|.-|    +..+|+|+||||||+++
T Consensus       183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vA----r~~qPsvifidEidsll  258 (428)
T KOG0740|consen  183 REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVA----RSLQPSVIFIDEIDSLL  258 (428)
T ss_pred             ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHH----HhcCCeEEEechhHHHH
Confidence            35779999999999999999999999999999999999999999999999999999999    99999999999999999


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHH
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR  175 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R  175 (337)
                      ..|. ........++-..+|+...-         . ......+|+||+|||+|+.+|.+++|  ||-+++++  |+.+.|
T Consensus       259 s~Rs-~~e~e~srr~ktefLiq~~~---------~-~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr  325 (428)
T KOG0740|consen  259 SKRS-DNEHESSRRLKTEFLLQFDG---------K-NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETR  325 (428)
T ss_pred             hhcC-CcccccchhhhhHHHhhhcc---------c-cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHH
Confidence            8876 34445555666666654322         2 12345699999999999999999999  99999999  999999


Q ss_pred             HHHHHHhccCCCC-----CHHHHHHHhcCCCchhhH
Q 019694          176 IGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       176 ~~Il~~~~~~~~l-----~~~~la~l~~gf~gadl~  206 (337)
                      ..++..+++..+.     +.+.++++++||+|.||.
T Consensus       326 ~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~  361 (428)
T KOG0740|consen  326 SLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT  361 (428)
T ss_pred             HHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence            9999999877632     238899999999999996

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.8e-28  Score=256.80  Aligned_cols=177  Identities=20%  Similarity=0.272  Sum_probs=155.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM   89 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~   89 (337)
                      ..++.+|+|||+|||||||||+.|+++|..+     .+.|+.-++.+..++|+|+.++.++.+|++|    ++.+|+|||
T Consensus       293 ~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA----~k~qPSIIf  368 (1080)
T KOG0732|consen  293 NFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEA----QKTQPSIIF  368 (1080)
T ss_pred             hcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHH----hccCceEEe
Confidence            3489999999999999999999999999987     3678899999999999999999999999999    999999999


Q ss_pred             ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694           90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA  169 (337)
Q Consensus        90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~  169 (337)
                      +||||-++..++ +.+... ...+.++|+.++|        |+   ..++.|+||+|||+++.+||||+||||||+.+|+
T Consensus       369 fdeIdGlapvrS-skqEqi-h~SIvSTLLaLmd--------Gl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f  435 (1080)
T KOG0732|consen  369 FDEIDGLAPVRS-SKQEQI-HASIVSTLLALMD--------GL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYF  435 (1080)
T ss_pred             cccccccccccc-chHHHh-hhhHHHHHHHhcc--------CC---CCCCceEEEcccCCccccchhhcCCcccceeEee
Confidence            999999998775 333333 3345578888888        77   7889999999999999999999999999999999


Q ss_pred             --CCHHHHHHHHHHhccCCC--CCH---HHHHHHhcCCCchhhHhH
Q 019694          170 --PTREDRIGVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       170 --P~~~~R~~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~~  208 (337)
                        |+.+.|..|+..+..+..  +..   ..+++.+.||.|+||.+.
T Consensus       436 ~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL  481 (1080)
T KOG0732|consen  436 PLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL  481 (1080)
T ss_pred             eCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence              999999999999988764  332   789999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.95  E-value=5.8e-27  Score=247.53  Aligned_cols=176  Identities=24%  Similarity=0.328  Sum_probs=151.0

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+.+|+|+|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..|    ....|+||||||||
T Consensus       206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a----~~~~p~il~iDEid  281 (733)
T TIGR01243       206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEA----EENAPSIIFIDEID  281 (733)
T ss_pred             hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHH----HhcCCcEEEeehhh
Confidence            56889999999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .++..++ ........ .+...|+++++        +.   ....+++||+|||+++.||++++|+|||++.+++  |+.
T Consensus       282 ~l~~~r~-~~~~~~~~-~~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~  348 (733)
T TIGR01243       282 AIAPKRE-EVTGEVEK-RVVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK  348 (733)
T ss_pred             hhccccc-CCcchHHH-HHHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence            9987764 22222223 34455666666        33   3456789999999999999999999999999998  999


Q ss_pred             HHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.++....+    +.+.+++.++||+|+++..
T Consensus       349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~  387 (733)
T TIGR01243       349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA  387 (733)
T ss_pred             HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence            9999999988876544    5688999999999999864

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.91  E-value=3.3e-24  Score=177.58  Aligned_cols=130  Identities=27%  Similarity=0.404  Sum_probs=110.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC-ceEEEecccccccccCCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG  102 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~-p~Il~IDEiD~l~~~~~~  102 (337)
                      |||+||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++..|..+    +... |+||||||+|.+..... 
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~~-   75 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKSQ-   75 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHCS-
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhcccccc-
Confidence            79999999999999999999999999999999999999999999999999999    7666 99999999999986652 


Q ss_pred             CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCC
Q 019694          103 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP  170 (337)
Q Consensus       103 ~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P  170 (337)
                       .......+.+.+.|++.+++..          ...++++||+|||+++.++++++| +||++.+++|
T Consensus        76 -~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~  131 (132)
T PF00004_consen   76 -PSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP  131 (132)
T ss_dssp             -TSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred             -cccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence             2334455566667777777221          224679999999999999999999 9999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.1e-22  Score=196.24  Aligned_cols=176  Identities=18%  Similarity=0.215  Sum_probs=131.4

Q ss_pred             hhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694           10 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM   89 (337)
Q Consensus        10 k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~   89 (337)
                      |.|++..|....+|-|||||||||||++..|+|+.|+..++.++.++...     ... ++.+...+      ...+||+
T Consensus       224 k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~LL~~t------~~kSIiv  291 (457)
T KOG0743|consen  224 KDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRHLLLAT------PNKSILL  291 (457)
T ss_pred             chHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHHHHHhC------CCCcEEE
Confidence            45666789999999999999999999999999999999999998876543     222 45554443      5678999


Q ss_pred             ecccccccccCC--CCc--ccc-hhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694           90 INDLDAGAGRMG--GTT--QYT-VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME  164 (337)
Q Consensus        90 IDEiD~l~~~~~--~~~--~~~-~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d  164 (337)
                      |.|||..+.-++  ...  ... ..+....+-|+|.+|        |.|......+ +||+|||+.+.|||||+||||||
T Consensus       292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~ER-IivFTTNh~EkLDPALlRpGRmD  362 (457)
T KOG0743|consen  292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDER-IIVFTTNHKEKLDPALLRPGRMD  362 (457)
T ss_pred             EeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCce-EEEEecCChhhcCHhhcCCCcce
Confidence            999998763221  110  011 122344455667777        8876665444 69999999999999999999999


Q ss_pred             EEEeC--CCHHHHHHHHHHhccCCC-CC-HHHHHHHhcCCCchhhH
Q 019694          165 KFYWA--PTREDRIGVCKGIFRNDN-VA-DDDIVKLVDTFPGQSID  206 (337)
Q Consensus       165 ~~i~~--P~~~~R~~Il~~~~~~~~-l~-~~~la~l~~gf~gadl~  206 (337)
                      .+|++  =+.++-..+++.++.-.. .. .++++++.++-.-.+.+
T Consensus       363 mhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~  408 (457)
T KOG0743|consen  363 MHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQ  408 (457)
T ss_pred             eEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHH
Confidence            99999  788888999999997753 22 37888888777444443

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.8e-21  Score=181.12  Aligned_cols=153  Identities=21%  Similarity=0.357  Sum_probs=126.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceE
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCC   87 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~I   87 (337)
                      +..-+-||||||||||||+|||++|+++.+         ..+.+++..+.++|.+|++++|..+|+...+++. .+...+
T Consensus       174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf  253 (423)
T KOG0744|consen  174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF  253 (423)
T ss_pred             eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence            345688999999999999999999999853         4678999999999999999999999999999998 677889


Q ss_pred             EEecccccccccCC---CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694           88 LMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME  164 (337)
Q Consensus        88 l~IDEiD~l~~~~~---~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d  164 (337)
                      ++|||+++++..|.   ..++.+-.-+.++..| ..+|        ..   ...++|++.+|+|-.+.||.||.-  |-|
T Consensus       254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalL-TQlD--------rl---K~~~NvliL~TSNl~~siD~AfVD--RAD  319 (423)
T KOG0744|consen  254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALL-TQLD--------RL---KRYPNVLILATSNLTDSIDVAFVD--RAD  319 (423)
T ss_pred             EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHH-HHHH--------Hh---ccCCCEEEEeccchHHHHHHHhhh--Hhh
Confidence            99999999984442   1233333445555444 4444        23   667999999999999999999985  899


Q ss_pred             EEEeC--CCHHHHHHHHHHhcc
Q 019694          165 KFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       165 ~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      ...++  |+.+.|.+|++.++.
T Consensus       320 i~~yVG~Pt~~ai~~Ilkscie  341 (423)
T KOG0744|consen  320 IVFYVGPPTAEAIYEILKSCIE  341 (423)
T ss_pred             heeecCCccHHHHHHHHHHHHH
Confidence            99999  999999999887763

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=4.8e-20  Score=187.52  Aligned_cols=147  Identities=21%  Similarity=0.300  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC---------CCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~---------~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      .+++|+||||+|||+|+++||+.++..|+.++.+.+.+.         |+|.....|-+...+|    +...| +++|||
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NP-v~LLDE  425 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNP-VFLLDE  425 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCC-eEEeec
Confidence            489999999999999999999999999999999877543         8888766666777777    55555 889999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC--CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~--~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      ||++.....|.         -.+.|++++|+.+|..+...|-..  +.++|++|+|+|..+.||.||+-  ||+. |.+ 
T Consensus       426 IDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~ls  493 (782)
T COG0466         426 IDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLS  493 (782)
T ss_pred             hhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceee-eeec
Confidence            99998665432         246788999999999998888765  47899999999999999999985  8987 455 


Q ss_pred             -CCHHHHHHHHHHhccC
Q 019694          170 -PTREDRIGVCKGIFRN  185 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~~  185 (337)
                       .+.++..+|.+.|+-.
T Consensus       494 gYt~~EKl~IAk~~LiP  510 (782)
T COG0466         494 GYTEDEKLEIAKRHLIP  510 (782)
T ss_pred             CCChHHHHHHHHHhcch
Confidence             9999999999988843

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.7e-19  Score=182.93  Aligned_cols=189  Identities=17%  Similarity=0.232  Sum_probs=140.0

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKM   85 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p   85 (337)
                      +.|--.-++++|+||||+|||+++++||+.+|..|+.+|.+.+.+         -|+|.....+-+..+..    +...|
T Consensus       432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v----~t~NP  507 (906)
T KOG2004|consen  432 LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV----KTENP  507 (906)
T ss_pred             hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh----CCCCc
Confidence            345555689999999999999999999999999999999887643         38887655555666665    44444


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC--CCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~--~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                       +++|||||++.....|         --.+.|++++|+.+|..+-..|...  +.++|++|||+|..+.||+||+-  ||
T Consensus       508 -liLiDEvDKlG~g~qG---------DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM  575 (906)
T KOG2004|consen  508 -LILIDEVDKLGSGHQG---------DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM  575 (906)
T ss_pred             -eEEeehhhhhCCCCCC---------ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh
Confidence             8999999999843322         1246788999999999988877664  57899999999999999999985  88


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccC-----CCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhh
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRN-----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSL  236 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~-----~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~  236 (337)
                      +. |.+  ...++...|.+.|+-.     .++..+.+            +    +-.......|.+|+++.|..++-+.+
T Consensus       576 Ev-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v------------~----is~~al~~lI~~YcrEaGVRnLqk~i  638 (906)
T KOG2004|consen  576 EV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV------------K----ISDDALLALIERYCREAGVRNLQKQI  638 (906)
T ss_pred             he-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc------------C----ccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            87 556  8899999999999843     24443322            1    00111233466677777777666544

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.7e-19  Score=173.54  Aligned_cols=167  Identities=17%  Similarity=0.231  Sum_probs=127.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh-cCceEEEecccccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG   98 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~-~~p~Il~IDEiD~l~~   98 (337)
                      +=+.||+|||||||||++|+.+|.+.|+.+-.+.++++.- .-.+....|+++|..|    ++ .+.-+|||||.|+++.
T Consensus       383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWa----kkS~rGLllFIDEADAFLc  457 (630)
T KOG0742|consen  383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWA----KKSRRGLLLFIDEADAFLC  457 (630)
T ss_pred             hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHH----hhcccceEEEehhhHHHHH
Confidence            3488999999999999999999999999999999987642 2224456789999999    74 4556899999999987


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                      .|...--..-....++.+|              +........++++.+||+|..+|.|+--  |+|..+++  |..++|.
T Consensus       458 eRnktymSEaqRsaLNAlL--------------fRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERf  521 (630)
T KOG0742|consen  458 ERNKTYMSEAQRSALNALL--------------FRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERF  521 (630)
T ss_pred             HhchhhhcHHHHHHHHHHH--------------HHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHH
Confidence            7652211222233455555              2222455778999999999999999974  99999998  9999999


Q ss_pred             HHHHHhccCC-------C-----------------C---C----HHHHHHHhcCCCchhhHh
Q 019694          177 GVCKGIFRND-------N-----------------V---A----DDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       177 ~Il~~~~~~~-------~-----------------l---~----~~~la~l~~gf~gadl~~  207 (337)
                      .++..|+.+.       +                 +   +    +.+.++.|+||+|..|.-
T Consensus       522 kll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak  583 (630)
T KOG0742|consen  522 KLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK  583 (630)
T ss_pred             HHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence            9977766311       1                 1   1    167899999999999863

>TIGR00763 lon ATP-dependent protease La

Probab=99.77  E-value=1.2e-17  Score=177.65  Aligned_cols=164  Identities=20%  Similarity=0.295  Sum_probs=119.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc---------cCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      ..+||+||||||||++|+++|+.++.+++.++.+.+.         ..|+|.....+.+.|..+    ....| ||||||
T Consensus       348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE  422 (775)
T TIGR00763       348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE  422 (775)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence            4799999999999999999999999999998766542         357777766777777776    55455 899999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc--cCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~--~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      ||++.....+.         ..+.|++++|+.++..+...+.  ..+.+++++|+|||..+.|+++|++  ||+ .+.+ 
T Consensus       423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~  490 (775)
T TIGR00763       423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELS  490 (775)
T ss_pred             hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecC
Confidence            99997543211         2346777887544333322221  1245789999999999999999997  886 4566 


Q ss_pred             -CCHHHHHHHHHHhcc-----C-------CCCCHHHHHHHhcCCCc
Q 019694          170 -PTREDRIGVCKGIFR-----N-------DNVADDDIVKLVDTFPG  202 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~-----~-------~~l~~~~la~l~~gf~g  202 (337)
                       |+.+++.+|++.++.     .       ..++.+.+..++.+|+.
T Consensus       491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~  536 (775)
T TIGR00763       491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR  536 (775)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence             899999999887751     1       13455777777776663

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.75  E-value=1.5e-17  Score=155.51  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---C----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      +..++|+||||||||++|+++|+.+   +    .+++.++++++.+.++|+.+..+++.|+.|       .++||||||+
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~  114 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEA  114 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEech
Confidence            3568999999999999999999874   2    367888999999999999988888888887       4689999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceEEEe
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~~i~  168 (337)
                      |.+....  .  ... ......+|+..++             ....++.+|++++..+     .++|+|.+  ||...+.
T Consensus       115 ~~L~~~~--~--~~~-~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~  174 (261)
T TIGR02881       115 YSLARGG--E--KDF-GKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID  174 (261)
T ss_pred             hhhccCC--c--cch-HHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence            9986311  1  111 1223345555555             2234556666654322     36788886  8877777


Q ss_pred             C--CCHHHHHHHHHHhccCCC--CCHHHH
Q 019694          169 A--PTREDRIGVCKGIFRNDN--VADDDI  193 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~~~--l~~~~l  193 (337)
                      +  ++.+++.+|++.++...+  ++.+.+
T Consensus       175 f~~~~~~el~~Il~~~~~~~~~~l~~~a~  203 (261)
T TIGR02881       175 FPDYTVEELMEIAERMVKEREYKLTEEAK  203 (261)
T ss_pred             ECCCCHHHHHHHHHHHHHHcCCccCHHHH
Confidence            7  688999999998887554  444433

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00181 cbbX CbbX; Provisional

Probab=99.73  E-value=7.6e-17  Score=152.87  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=110.2

Q ss_pred             CCCCCC---cEEEEEcCCCchHHHHHHHHHHHh---C----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694           16 PNIKVP---LILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM   85 (337)
Q Consensus        16 ~g~~~p---~giLL~GpPGtGKT~lA~aiA~~l---~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p   85 (337)
                      .|..+|   ..+||+||||||||++|+++|+.+   |    .+++.++.+++.+.|+|+.+..++.+|+.|       .+
T Consensus        51 ~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~g  123 (287)
T CHL00181         51 LGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MG  123 (287)
T ss_pred             cCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cC
Confidence            455443   458999999999999999998875   2    258899999999999999887777777777       56


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD  160 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~  160 (337)
                      +||||||+|.+...++ ..   .....+..+|+.+++             ....++.||++++...     .++|+|.| 
T Consensus       124 gVLfIDE~~~l~~~~~-~~---~~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s-  185 (287)
T CHL00181        124 GVLFIDEAYYLYKPDN-ER---DYGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS-  185 (287)
T ss_pred             CEEEEEccchhccCCC-cc---chHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH-
Confidence            8999999999864332 11   122345556767666             2235677888776422     23588887 


Q ss_pred             CCceEEEeC--CCHHHHHHHHHHhccCCC--CCHH
Q 019694          161 GRMEKFYWA--PTREDRIGVCKGIFRNDN--VADD  191 (337)
Q Consensus       161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~  191 (337)
                       ||+..+.+  ++.+++.+|+..++...+  ++.+
T Consensus       186 -R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~  219 (287)
T CHL00181        186 -RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE  219 (287)
T ss_pred             -hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence             89988888  899999999999987543  4443

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.6e-17  Score=164.61  Aligned_cols=179  Identities=18%  Similarity=0.204  Sum_probs=144.1

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      ++.+ .+-.|||+||+|||||.|++++++++.    +++..++++.+.........+.++..|.+|    -+.+|+||++
T Consensus       426 spv~-~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvL  500 (952)
T KOG0735|consen  426 SPVF-RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVL  500 (952)
T ss_pred             cccc-ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEE
Confidence            4433 356899999999999999999999874    567788999887665555566777788888    9999999999


Q ss_pred             cccccccccC-CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694           91 NDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA  169 (337)
Q Consensus        91 DEiD~l~~~~-~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~  169 (337)
                      |++|.+++.. ..+++..+..+++..+|.+++.        .+  ...+..+.||+|.+....|.+-|..|++|+..+.+
T Consensus       501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~--------~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L  570 (952)
T KOG0735|consen  501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIK--------IY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL  570 (952)
T ss_pred             cchhhhhccCcccCCcchHHHHHHHHHHHHHHH--------HH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence            9999999733 2356677777778777766655        11  13345689999999999999999999999999998


Q ss_pred             --CCHHHHHHHHHHhccCCCCCH-----HHHHHHhcCCCchhhHhH
Q 019694          170 --PTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       170 --P~~~~R~~Il~~~~~~~~l~~-----~~la~l~~gf~gadl~~~  208 (337)
                        |+..+|.+|++..+.+...+.     +-++..|+||...|+..|
T Consensus       571 ~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if  616 (952)
T KOG0735|consen  571 PAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF  616 (952)
T ss_pred             CCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence              999999999999987765332     458899999999999865

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.72  E-value=1.3e-16  Score=151.05  Aligned_cols=147  Identities=11%  Similarity=0.093  Sum_probs=109.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC-------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~-------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ..++||+||||||||++|+++|+.+.       .+++.++++++.+.+.|+++..+++.|+.|       .+++|||||+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi  130 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEA  130 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEech
Confidence            45899999999999999999988762       268899999999999999888888888877       5689999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC--C---CCcchhccCCCceEEEe
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF--S---TLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~--~---~ld~aLlR~gR~d~~i~  168 (337)
                      |.+...+.+    ......+...|+++++             ....++.||++++..  +   .++|+|.+  ||+..+.
T Consensus       131 ~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~  191 (284)
T TIGR02880       131 YYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVD  191 (284)
T ss_pred             hhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEE
Confidence            988643321    1122344556667766             223567788887642  2   24788988  8988888


Q ss_pred             C--CCHHHHHHHHHHhccCC--CCCHHHH
Q 019694          169 A--PTREDRIGVCKGIFRND--NVADDDI  193 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~~--~l~~~~l  193 (337)
                      +  ++.+++.+|++.++...  .++.+.+
T Consensus       192 fp~l~~edl~~I~~~~l~~~~~~l~~~a~  220 (284)
T TIGR02880       192 FPDYSEAELLVIAGLMLKEQQYRFSAEAE  220 (284)
T ss_pred             eCCcCHHHHHHHHHHHHHHhccccCHHHH
Confidence            8  78999999999998765  3444433

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.7e-16  Score=159.48  Aligned_cols=175  Identities=21%  Similarity=0.249  Sum_probs=147.6

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..++.+|++++++||||||||++++++|.. +..++.+++.+..+++.|+++..++..|..|    +...|+++++||+|
T Consensus        12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~   86 (494)
T COG0464          12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEID   86 (494)
T ss_pred             HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhh
Confidence            568899999999999999999999999999 7777889999999999999999999999999    88899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .+...+.. ....+....+ ..|...++        +..   ... +.+++.||++..+++++.|++||++.+.+  |+.
T Consensus        87 ~~~~~~~~-~~~~~~~~v~-~~l~~~~d--------~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  152 (494)
T COG0464          87 ALAPKRSS-DQGEVERRVV-AQLLALMD--------GLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE  152 (494)
T ss_pred             hcccCccc-cccchhhHHH-HHHHHhcc--------ccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence            99988763 3333444444 44445555        442   344 88999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhH
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~  208 (337)
                      ..+.+|+..+....    ..+...++..+.||.++++..+
T Consensus       153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l  192 (494)
T COG0464         153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL  192 (494)
T ss_pred             HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence            99999987776544    3456899999999999999754

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.7e-16  Score=159.88  Aligned_cols=175  Identities=15%  Similarity=0.154  Sum_probs=141.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      +.+.-..+||+|+||||||++++++|.++|++++.+++.++.+...+..+..+...|.+|    +...|+|||+-++|.+
T Consensus       427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl  502 (953)
T KOG0736|consen  427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVL  502 (953)
T ss_pred             ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEecccee
Confidence            345566899999999999999999999999999999999999999999999999999999    9999999999999998


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCHHHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI  176 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~~~R~  176 (337)
                      .....|+... ...+.+ +.++. .          ....-..++++||+||+..+.|++.+.+..+++..+..|+.++|.
T Consensus       503 ~id~dgged~-rl~~~i-~~~ls-~----------e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl  569 (953)
T KOG0736|consen  503 GIDQDGGEDA-RLLKVI-RHLLS-N----------EDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL  569 (953)
T ss_pred             eecCCCchhH-HHHHHH-HHHHh-c----------ccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence            8544421111 111111 12211 1          111235688999999999999999999888877777779999999


Q ss_pred             HHHHHhccCCCCCH----HHHHHHhcCCCchhhHhH
Q 019694          177 GVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       177 ~Il~~~~~~~~l~~----~~la~l~~gf~gadl~~~  208 (337)
                      +|++.++....++.    ..++..+.||+-++++-+
T Consensus       570 ~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l  605 (953)
T KOG0736|consen  570 EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL  605 (953)
T ss_pred             HHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence            99999998776663    789999999999999743

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.66  E-value=6.3e-16  Score=163.68  Aligned_cols=158  Identities=16%  Similarity=0.177  Sum_probs=115.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +....++|+||||||||++|+++|+.+          +..++.++.+.+.  .+|.|+.+..++.+|+++    ++..++
T Consensus       201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~  276 (731)
T TIGR02639       201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNA  276 (731)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCe
Confidence            345678999999999999999999987          6778888888886  578999999999999998    767899


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g  161 (337)
                      ||||||||.+.+..+. .....   .....|...+               ..+.+.+|++||..+     .+|+||.|  
T Consensus       277 ILfiDEih~l~~~g~~-~~~~~---~~~~~L~~~l---------------~~g~i~~IgaTt~~e~~~~~~~d~al~r--  335 (731)
T TIGR02639       277 ILFIDEIHTIVGAGAT-SGGSM---DASNLLKPAL---------------SSGKLRCIGSTTYEEYKNHFEKDRALSR--  335 (731)
T ss_pred             EEEEecHHHHhccCCC-CCccH---HHHHHHHHHH---------------hCCCeEEEEecCHHHHHHHhhhhHHHHH--
Confidence            9999999999854321 11111   1222332222               246789999999733     57999998  


Q ss_pred             CceEEEeC--CCHHHHHHHHHHhccC----C--CCCH---HHHHHHhcCCCc
Q 019694          162 RMEKFYWA--PTREDRIGVCKGIFRN----D--NVAD---DDIVKLVDTFPG  202 (337)
Q Consensus       162 R~d~~i~~--P~~~~R~~Il~~~~~~----~--~l~~---~~la~l~~gf~g  202 (337)
                      ||.. +.+  |+.+++.+|++.+...    .  .++.   ..++.++..|-+
T Consensus       336 Rf~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~  386 (731)
T TIGR02639       336 RFQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN  386 (731)
T ss_pred             hCce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence            8875 566  9999999998865532    2  3454   445666666543

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.65  E-value=3.5e-15  Score=158.38  Aligned_cols=163  Identities=20%  Similarity=0.296  Sum_probs=119.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      ..++|+||||||||++++.+|+.++.+++.++.+...+         .|.|.....+.+.+..+    ... ..||||||
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~-~~villDE  424 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVK-NPLFLLDE  424 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCC-CCEEEEEC
Confidence            46999999999999999999999999999888776432         35665544555555555    333 34899999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc--CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~--~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      ||++.....+         .....|++++|+.++..+...|..  .+.++|++|+|||... |++||+.  ||+.+.+. 
T Consensus       425 idk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~--R~~ii~~~~  492 (784)
T PRK10787        425 IDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLD--RMEVIRLSG  492 (784)
T ss_pred             hhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhc--ceeeeecCC
Confidence            9998654321         124678889998777776655543  3578999999999984 9999985  99764444 


Q ss_pred             CCHHHHHHHHHHhccC------------CCCCHHHHHHHhcCCC
Q 019694          170 PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFP  201 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~------------~~l~~~~la~l~~gf~  201 (337)
                      ++.++..+|++.++..            ..++.+.+..++++|+
T Consensus       493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt  536 (784)
T PRK10787        493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT  536 (784)
T ss_pred             CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence            8999999998888731            1234466666666665

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.59  E-value=1.4e-14  Score=131.51  Aligned_cols=145  Identities=15%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ...-.+|||||||+|||+||+.||++++.++...+++.+..     . .-+..++..      -....|||||||..+- 
T Consensus        48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~-~dl~~il~~------l~~~~ILFIDEIHRln-  114 (233)
T PF05496_consen   48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----A-GDLAAILTN------LKEGDILFIDEIHRLN-  114 (233)
T ss_dssp             S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----C-HHHHHHHHT--------TT-EEEECTCCC---
T ss_pred             CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----H-HHHHHHHHh------cCCCcEEEEechhhcc-
Confidence            34568999999999999999999999999999998864321     2 222222222      2356799999998652 


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-----ccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-----NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-----~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                                  ..++..|+..+++-...-+-|.-     .....++.-+|++|++...|.+||.-  ||-....+  .+
T Consensus       115 ------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~  180 (233)
T PF05496_consen  115 ------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS  180 (233)
T ss_dssp             ------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred             ------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence                        23445565555543221111110     01124567899999999999999975  77776655  99


Q ss_pred             HHHHHHHHHHhccCCCCCH
Q 019694          172 REDRIGVCKGIFRNDNVAD  190 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l~~  190 (337)
                      .++...|++......+++.
T Consensus       181 ~~el~~Iv~r~a~~l~i~i  199 (233)
T PF05496_consen  181 EEELAKIVKRSARILNIEI  199 (233)
T ss_dssp             HHHHHHHHHHCCHCTT-EE
T ss_pred             HHHHHHHHHHHHHHhCCCc
Confidence            9999999988777665553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.58  E-value=3.1e-14  Score=141.12  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCChH-HHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~~-~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ...+||+||||||||++|+++|+.++.+|+.++++.+. .+|+|... ..+..++..+...+....++||||||||++..
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~  187 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR  187 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence            47899999999999999999999999999999998875 57888753 34455555443334456889999999999986


Q ss_pred             cCCC-CcccchhhHhHHHHHHhhhCC
Q 019694           99 RMGG-TTQYTVNNQMVNATLMNIADN  123 (337)
Q Consensus        99 ~~~~-~~~~~~~~~~v~~~Ll~lld~  123 (337)
                      +..+ +....+....+++.|+.+++.
T Consensus       188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg  213 (412)
T PRK05342        188 KSENPSITRDVSGEGVQQALLKILEG  213 (412)
T ss_pred             ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence            5321 112233444678888899973

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.56  E-value=1.2e-14  Score=153.44  Aligned_cols=139  Identities=14%  Similarity=0.151  Sum_probs=102.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      .+..+||+||||||||++|+++|...          +..++.++.+.+.  .+|.|+.+..++.+|..+    +...++|
T Consensus       206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~I  281 (758)
T PRK11034        206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI  281 (758)
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCE
Confidence            45667999999999999999999874          4455666655555  457888888888888887    6778999


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCC
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR  162 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR  162 (337)
                      |||||||.+++..+.. ..   ...+.++|..++.               .+++.+|++||..+     ..|++|.|  |
T Consensus       282 LfIDEIh~L~g~g~~~-~g---~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--R  340 (758)
T PRK11034        282 LFIDEIHTIIGAGAAS-GG---QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R  340 (758)
T ss_pred             EEeccHHHHhccCCCC-Cc---HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--h
Confidence            9999999998654311 11   1112223332322               46789999999865     57999998  8


Q ss_pred             ceEEEeC--CCHHHHHHHHHHhcc
Q 019694          163 MEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       163 ~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      |+. +.+  |+.+++.+|++.+..
T Consensus       341 Fq~-I~v~ePs~~~~~~IL~~~~~  363 (758)
T PRK11034        341 FQK-IDITEPSIEETVQIINGLKP  363 (758)
T ss_pred             CcE-EEeCCCCHHHHHHHHHHHHH
Confidence            874 666  999999999887653

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.56  E-value=2.9e-14  Score=140.13  Aligned_cols=154  Identities=21%  Similarity=0.255  Sum_probs=119.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCC-ChHHHHHHHHHHHHHH------------------
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADI------------------   79 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~G-e~~~~ir~~f~~A~~~------------------   79 (337)
                      .|+.|||+||||||||++|+++|+.++.+|+.++++++.. +|+| +.+..++.+|..|..+                  
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e  128 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE  128 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999999998875 7999 5578888888888200                  


Q ss_pred             --------------------------------------------------------------------------------
Q 019694           80 --------------------------------------------------------------------------------   79 (337)
Q Consensus        80 --------------------------------------------------------------------------------   79 (337)
                                                                                                      
T Consensus       129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (443)
T PRK05201        129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP  208 (443)
T ss_pred             HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence                                                                                            


Q ss_pred             -----------------------------------HH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCC
Q 019694           80 -----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN  123 (337)
Q Consensus        80 -----------------------------------~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~  123 (337)
                                                         +. .....||||||||+++.+.++ ....+...-|++.|+.+++.
T Consensus       209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG  287 (443)
T PRK05201        209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEG  287 (443)
T ss_pred             CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhccccccccc
Confidence                                               01 124579999999999976542 33456667788888888884


Q ss_pred             CccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHHHHHHHH
Q 019694          124 PTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC  179 (337)
Q Consensus       124 ~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il  179 (337)
                      .+...   .+......+|++||+.-    .|+.|-|.|+  |||-....+  ++.++...||
T Consensus       288 ~~v~~---k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL  344 (443)
T PRK05201        288 STVST---KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL  344 (443)
T ss_pred             ceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence            33221   23346678899998754    4667778887  899999998  8999988886

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.56  E-value=2.4e-14  Score=140.60  Aligned_cols=154  Identities=19%  Similarity=0.215  Sum_probs=119.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCC-ChHHHHHHHHHHHHHHH-----------------
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII-----------------   80 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~G-e~~~~ir~~f~~A~~~~-----------------   80 (337)
                      .|++|||+||||||||++|+++|+.++.+|+.++.+.+. .+|+| +.+..++.+|..|...+                 
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae  125 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE  125 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            579999999999999999999999999999999999886 48999 57788888888772100                 


Q ss_pred             --------------------------------------------------------------------------------
Q 019694           81 --------------------------------------------------------------------------------   80 (337)
Q Consensus        81 --------------------------------------------------------------------------------   80 (337)
                                                                                                      
T Consensus       126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (441)
T TIGR00390       126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG  205 (441)
T ss_pred             HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence                                                                                            


Q ss_pred             --------------------------------------HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhC
Q 019694           81 --------------------------------------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD  122 (337)
Q Consensus        81 --------------------------------------~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld  122 (337)
                                                            +.....||||||||+++.+.+ +....+...-|++.|+.++.
T Consensus       206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilE  284 (441)
T TIGR00390       206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVE  284 (441)
T ss_pred             CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhcccccccc
Confidence                                                  012457999999999996653 23445666778888888888


Q ss_pred             CCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHHHHHHHH
Q 019694          123 NPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC  179 (337)
Q Consensus       123 ~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il  179 (337)
                      ..+...   .+......+|++||+.-    .|+.|=|.|.  |||-....+  ++.++-..||
T Consensus       285 Gt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL  342 (441)
T TIGR00390       285 GSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL  342 (441)
T ss_pred             Cceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence            433221   23346678899998764    5667777887  899999998  8999988886

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.56  E-value=2.2e-14  Score=153.99  Aligned_cols=141  Identities=20%  Similarity=0.229  Sum_probs=105.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +....++|+||||||||++|+.+|..+          +.+++.++.+.+.  .+|.|+.+..++.+|.+..   +...++
T Consensus       197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~  273 (857)
T PRK10865        197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNV  273 (857)
T ss_pred             CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCe
Confidence            344578899999999999999999987          6788888888775  4588999889999998751   346789


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g  161 (337)
                      |||||||+.+.+..+.  .....   ....|..            .   -.++.+.+|+||+..+     .+|+||.|  
T Consensus       274 ILfIDEih~l~~~~~~--~~~~d---~~~~lkp------------~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--  331 (857)
T PRK10865        274 ILFIDELHTMVGAGKA--DGAMD---AGNMLKP------------A---LARGELHCVGATTLDEYRQYIEKDAALER--  331 (857)
T ss_pred             EEEEecHHHhccCCCC--ccchh---HHHHhcc------------h---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--
Confidence            9999999999865431  11111   1112211            1   2357889999999877     48999999  


Q ss_pred             CceEEEeC-CCHHHHHHHHHHhcc
Q 019694          162 RMEKFYWA-PTREDRIGVCKGIFR  184 (337)
Q Consensus       162 R~d~~i~~-P~~~~R~~Il~~~~~  184 (337)
                      ||+.++.. |+.+++..|++.+..
T Consensus       332 Rf~~i~v~eP~~~~~~~iL~~l~~  355 (857)
T PRK10865        332 RFQKVFVAEPSVEDTIAILRGLKE  355 (857)
T ss_pred             hCCEEEeCCCCHHHHHHHHHHHhh
Confidence            88764433 999999999887754

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.56  E-value=4.5e-14  Score=136.15  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=100.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .++..+|||||||||||++|+++|++++..+..++++.+..      ...+...+..      ...++||||||||.+..
T Consensus        49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~  116 (328)
T PRK00080         49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP  116 (328)
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence            45778999999999999999999999999888777654321      1222233322      24678999999998742


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~----~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      ..             ...|...+++.. .+.++.....    ...+.+.+|++||++..++++|..  ||...+.+  |+
T Consensus       117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~  181 (328)
T PRK00080        117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT  181 (328)
T ss_pred             HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence            11             111222222110 0111111000    123457899999999999999875  77776776  99


Q ss_pred             HHHHHHHHHHhccCCCC--CHH---HHHHHhcCCC
Q 019694          172 REDRIGVCKGIFRNDNV--ADD---DIVKLVDTFP  201 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l--~~~---~la~l~~gf~  201 (337)
                      .+++.+|++......++  +++   .|++.+.|.+
T Consensus       182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p  216 (328)
T PRK00080        182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGTP  216 (328)
T ss_pred             HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence            99999999888766544  444   4444444444

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.54  E-value=8.6e-14  Score=137.64  Aligned_cols=128  Identities=18%  Similarity=0.227  Sum_probs=86.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      +..+||+||||||||++|+++|+.++++|..++++.+. .+|+|.. +..+...+..+...+....++||||||||++..
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~  195 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR  195 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence            36899999999999999999999999999999988875 4688875 344555554432333456789999999999986


Q ss_pred             cCCC-CcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeCC
Q 019694           99 RMGG-TTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGND  149 (337)
Q Consensus        99 ~~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN~  149 (337)
                      ++.+ +....+....+++.|+.+++. ..+.++ ..-...+..+.++|.|+|-
T Consensus       196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~~~~~i~i~TsNi  247 (413)
T TIGR00382       196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHPYQEFIQIDTSNI  247 (413)
T ss_pred             hhccccccccccchhHHHHHHHHhhc-cceecccCCCccccCCCeEEEEcCCc
Confidence            5431 112233344677888888862 222211 1111223455677888775

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.53  E-value=9.8e-14  Score=148.72  Aligned_cols=166  Identities=18%  Similarity=0.215  Sum_probs=119.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      ..+.+..++|+||||||||++|+.+|..+          +..++.++.+.+.  .+|.|+.+..++.+|+++    +...
T Consensus       196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~  271 (821)
T CHL00095        196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENN  271 (821)
T ss_pred             cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcC
Confidence            44567789999999999999999999986          3678899988876  578899999999999998    6678


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR  159 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR  159 (337)
                      ++|||||||+.+.+..+.  ....   .+...|...               -.++.+.+|++|+..+     ..|++|.|
T Consensus       272 ~~ILfiDEih~l~~~g~~--~g~~---~~a~lLkp~---------------l~rg~l~~IgaTt~~ey~~~ie~D~aL~r  331 (821)
T CHL00095        272 NIILVIDEVHTLIGAGAA--EGAI---DAANILKPA---------------LARGELQCIGATTLDEYRKHIEKDPALER  331 (821)
T ss_pred             CeEEEEecHHHHhcCCCC--CCcc---cHHHHhHHH---------------HhCCCcEEEEeCCHHHHHHHHhcCHHHHh
Confidence            999999999998865431  1111   122222211               1246789999999764     47899998


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhcc------CCCCCH---HHHHHHhcCCCc------hhhHhHH
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFR------NDNVAD---DDIVKLVDTFPG------QSIDFFG  209 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~------~~~l~~---~~la~l~~gf~g------adl~~~~  209 (337)
                        ||.. +.+  |+.++...|++....      ...++.   ..++.++.+|-+      ..|+++.
T Consensus       332 --Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld  395 (821)
T CHL00095        332 --RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD  395 (821)
T ss_pred             --cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence              8876 455  999999888765431      223554   456677777654      3566543

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.53  E-value=7.7e-14  Score=149.57  Aligned_cols=163  Identities=17%  Similarity=0.189  Sum_probs=114.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC----------CCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM   85 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~----------~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p   85 (337)
                      +....++|+||||||||++|+.+|+.+.          ..++.++.+.+.  .++.|+.+..++.++.++    + ...+
T Consensus       206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~  281 (852)
T TIGR03345       206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQP  281 (852)
T ss_pred             CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCC
Confidence            3345789999999999999999999862          456777777765  368899999999999988    5 3578


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRD  160 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~  160 (337)
                      +|||||||+.+.+..+...+..     ...+|...               -.++.+.+|+||+..+     .+|+||.| 
T Consensus       282 ~ILfIDEih~l~~~g~~~~~~d-----~~n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r-  340 (852)
T TIGR03345       282 IILFIDEAHTLIGAGGQAGQGD-----AANLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR-  340 (852)
T ss_pred             eEEEEeChHHhccCCCcccccc-----HHHHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH-
Confidence            9999999999986543111111     11122211               2356789999999643     48999999 


Q ss_pred             CCceEEEeC--CCHHHHHHHHHHhccC----CC--CCH---HHHHHHhcCCC------chhhHhH
Q 019694          161 GRMEKFYWA--PTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFP------GQSIDFF  208 (337)
Q Consensus       161 gR~d~~i~~--P~~~~R~~Il~~~~~~----~~--l~~---~~la~l~~gf~------gadl~~~  208 (337)
                       ||. .+.+  |+.+++..|++.+...    .+  ++.   ..++.++++|.      +..||..
T Consensus       341 -Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll  403 (852)
T TIGR03345       341 -RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL  403 (852)
T ss_pred             -hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence             886 4666  9999999997655532    23  344   45667776664      4456554

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.50  E-value=1.6e-13  Score=147.66  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=112.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHh-cC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GK   84 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~-~~   84 (337)
                      .+....++|+||||||||++++.+|..+          +.+++.++.+.+.  .+|.|+.++.++.+|..+    .. ..
T Consensus       191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~  266 (852)
T TIGR03346       191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEG  266 (852)
T ss_pred             cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCC
Confidence            3445677899999999999999999986          6678888877765  468888888888998887    43 46


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR  159 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR  159 (337)
                      ++|||||||+.+.+..+  .+...   .....|...               ...+.+.+|++||..+     .+|++|.|
T Consensus       267 ~~ILfIDEih~l~~~g~--~~~~~---d~~~~Lk~~---------------l~~g~i~~IgaTt~~e~r~~~~~d~al~r  326 (852)
T TIGR03346       267 QIILFIDELHTLVGAGK--AEGAM---DAGNMLKPA---------------LARGELHCIGATTLDEYRKYIEKDAALER  326 (852)
T ss_pred             CeEEEeccHHHhhcCCC--Ccchh---HHHHHhchh---------------hhcCceEEEEeCcHHHHHHHhhcCHHHHh
Confidence            99999999999875432  11111   111222111               2356789999999764     58999999


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCC----C--CCH---HHHHHHhcCCCch
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRND----N--VAD---DDIVKLVDTFPGQ  203 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~----~--l~~---~~la~l~~gf~ga  203 (337)
                        ||.. +.+  |+.+++..|++.+....    +  +..   ...+.++.+|-..
T Consensus       327 --Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~  378 (852)
T TIGR03346       327 --RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITD  378 (852)
T ss_pred             --cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccc
Confidence              8876 455  99999999987764332    2  333   4456777776543

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.49  E-value=3.1e-13  Score=128.49  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=97.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ..+..++||||||||||++|+++|++++..+..+.++.+..     . ..+...+..      ...+.+|||||++.+..
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~-~~l~~~l~~------~~~~~vl~iDEi~~l~~   95 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----P-GDLAAILTN------LEEGDVLFIDEIHRLSP   95 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----c-hhHHHHHHh------cccCCEEEEehHhhhCH
Confidence            44667999999999999999999999998877666543221     1 111222211      24678999999997643


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~----~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      ..             ...|.+++++-. .+.++..+..    ...+.+.+|++||++..++++++.  ||...+.+  |+
T Consensus        96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~  160 (305)
T TIGR00635        96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT  160 (305)
T ss_pred             HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence            21             112333332111 0111111000    123457899999999999999876  77766666  99


Q ss_pred             HHHHHHHHHHhccCC--CCCHHH---HHHHhcCCC
Q 019694          172 REDRIGVCKGIFRND--NVADDD---IVKLVDTFP  201 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~--~l~~~~---la~l~~gf~  201 (337)
                      .+++.+|++......  .++.+.   +++.+.|.+
T Consensus       161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p  195 (305)
T TIGR00635       161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP  195 (305)
T ss_pred             HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence            999999988877644  445544   444444544

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.47  E-value=4.3e-13  Score=129.69  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM  100 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~  100 (337)
                      .-.++||||||||||++|+.||...+.+|..+|+..       .+-+-+|+++++|......++..|||||||..+-.. 
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-  119 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-  119 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-
Confidence            346789999999999999999999999999999852       345778999999966666778899999999754221 


Q ss_pred             CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-CC-CCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694          101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-ND-FSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus       101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-N~-~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                          +        +.+|+-.               .+.+.|++|++| -+ .-.|.+||+.+.|   ++.+  .+.++..
T Consensus       120 ----Q--------QD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~  169 (436)
T COG2256         120 ----Q--------QDALLPH---------------VENGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIK  169 (436)
T ss_pred             ----h--------hhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHH
Confidence                1        1222222               234667777754 33 4478999987555   3334  6888888


Q ss_pred             HHHHH
Q 019694          177 GVCKG  181 (337)
Q Consensus       177 ~Il~~  181 (337)
                      .+++.
T Consensus       170 ~~l~r  174 (436)
T COG2256         170 KLLKR  174 (436)
T ss_pred             HHHHH
Confidence            88776

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.47  E-value=1e-12  Score=123.05  Aligned_cols=146  Identities=16%  Similarity=0.251  Sum_probs=91.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc------cccCCCCChHHHHHHHHHHH--------------HHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADII   80 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~------l~~~~~Ge~~~~ir~~f~~A--------------~~~~   80 (337)
                      ...|||+||||||||++|+++|+.+|.+++.+++..      +.+.+.|.....+...|...              .-+.
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  100 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT  100 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence            356899999999999999999999999999887654      33333322212111111100              0000


Q ss_pred             H-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc----CCCCCceEEEEeCCC-----
Q 019694           81 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDF-----  150 (337)
Q Consensus        81 ~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~----~~~~~V~vI~TTN~~-----  150 (337)
                      . ...+.+|+|||||.+-.             .+...|+.+++.. .+.+++....    ...+...||+|+|..     
T Consensus       101 ~A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~~-~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~  166 (262)
T TIGR02640       101 LAVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEEG-VLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV  166 (262)
T ss_pred             HHHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcCC-eEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence            0 12456999999986421             2455666777632 2233322111    123466799999975     


Q ss_pred             CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          151 STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       151 ~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                      ..++++|++  ||- .+++  |+.++-.+|++.++
T Consensus       167 ~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       167 HETQDALLD--RLI-TIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             ecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence            357889987  664 4555  99999999998876

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK04195 replication factor C large subunit; Provisional

Probab=99.46  E-value=1.2e-12  Score=132.69  Aligned_cols=151  Identities=19%  Similarity=0.229  Sum_probs=101.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-h-cCceEEEecccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDAG   96 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~-~~p~Il~IDEiD~l   96 (337)
                      .+++.+|||||||||||++|+++|++++.+++.+++++...      ...++.....+..... . ..+.||+|||+|.+
T Consensus        37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L  110 (482)
T PRK04195         37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI  110 (482)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence            44889999999999999999999999999999999876432      2344444444422111 1 25789999999987


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc-hhccCCCceEEEeC--CCHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~-aLlR~gR~d~~i~~--P~~~  173 (337)
                      .+...    ..    .+ ..|++++.               ..+.++|++||++..+++ .|.+  |+. .+.+  |+.+
T Consensus       111 ~~~~d----~~----~~-~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~-~I~f~~~~~~  163 (482)
T PRK04195        111 HGNED----RG----GA-RAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACL-MIEFKRLSTR  163 (482)
T ss_pred             ccccc----hh----HH-HHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cce-EEEecCCCHH
Confidence            64211    00    11 22333333               234579999999998887 5544  333 3444  8999


Q ss_pred             HHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694          174 DRIGVCKGIFRNDN--VADDDIVKLVDTFPG  202 (337)
Q Consensus       174 ~R~~Il~~~~~~~~--l~~~~la~l~~gf~g  202 (337)
                      +...+++.++...+  ++.+.+..+++...|
T Consensus       164 ~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G  194 (482)
T PRK04195        164 SIVPVLKRICRKEGIECDDEALKEIAERSGG  194 (482)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            99999998886665  455666666665443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.44  E-value=3e-12  Score=127.36  Aligned_cols=141  Identities=17%  Similarity=0.208  Sum_probs=94.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM  100 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~  100 (337)
                      +..++||||||||||++|+++|+.++..++.++.+.       .....++..++.+......+...||||||+|.+... 
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-  107 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-  107 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence            347899999999999999999999999999988753       223456777777744434557899999999975321 


Q ss_pred             CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694          101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus       101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                                  ....|+..++               ...+++|++|  |....++++|++  |+ ..+.+  |+.++..
T Consensus       108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~  157 (413)
T PRK13342        108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIE  157 (413)
T ss_pred             ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHH
Confidence                        1223333333               1345666654  334578999987  55 33445  8888988


Q ss_pred             HHHHHhccC----C-CCCHHHHHHHhcC
Q 019694          177 GVCKGIFRN----D-NVADDDIVKLVDT  199 (337)
Q Consensus       177 ~Il~~~~~~----~-~l~~~~la~l~~g  199 (337)
                      .+++..+..    . .++.+.+..+...
T Consensus       158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~  185 (413)
T PRK13342        158 QLLKRALEDKERGLVELDDEALDALARL  185 (413)
T ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHh
Confidence            888776643    1 4555544444443

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.44  E-value=4.5e-12  Score=121.10  Aligned_cols=150  Identities=18%  Similarity=0.292  Sum_probs=97.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAG   96 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l   96 (337)
                      -+.|..+||+||||+|||++|++++++++.+++.+++++  .    . ...++........... ...+.||+|||+|.+
T Consensus        40 ~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l  112 (316)
T PHA02544         40 GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRL  112 (316)
T ss_pred             CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c----c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccc
Confidence            356788888999999999999999999999999988875  1    1 1223332222211111 246789999999976


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe-CCCHHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR  175 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~-~P~~~~R  175 (337)
                      ...            ..+..|..+++             ....++.+|+|||.++.+++++.+  |+..+.. .|+.+++
T Consensus       113 ~~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~  165 (316)
T PHA02544        113 GLA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQ  165 (316)
T ss_pred             cCH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHH
Confidence            211            11233334444             223567899999999999999987  6655444 3999999


Q ss_pred             HHHHHHh-------ccCC--CCCHHHHHHHhcCCC
Q 019694          176 IGVCKGI-------FRND--NVADDDIVKLVDTFP  201 (337)
Q Consensus       176 ~~Il~~~-------~~~~--~l~~~~la~l~~gf~  201 (337)
                      .++++.+       +...  .++.+.+..++....
T Consensus       166 ~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~  200 (316)
T PHA02544        166 IEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF  200 (316)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence            8775443       2222  444455555555433

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.43  E-value=1.7e-12  Score=128.11  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=101.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc-----------------------EEecCCccccCCCCChHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~-----------------------i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      +.+.|.++||+||||+|||++|+++|+.+....                       ..+...   ...  -....||+++
T Consensus        32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~~--i~i~~iR~l~  106 (394)
T PRK07940         32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GLS--IGVDEVRELV  106 (394)
T ss_pred             CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence            345789999999999999999999999875431                       111110   011  1223467777


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      +.+...-..+...|+||||+|.+...            . ...|+..++             ++..++++|.+|++++.|
T Consensus       107 ~~~~~~p~~~~~kViiIDead~m~~~------------a-anaLLk~LE-------------ep~~~~~fIL~a~~~~~l  160 (394)
T PRK07940        107 TIAARRPSTGRWRIVVIEDADRLTER------------A-ANALLKAVE-------------EPPPRTVWLLCAPSPEDV  160 (394)
T ss_pred             HHHHhCcccCCcEEEEEechhhcCHH------------H-HHHHHHHhh-------------cCCCCCeEEEEECChHHC
Confidence            77622112456679999999987321            1 133444555             344556777777779999


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHhH
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~~  208 (337)
                      .|++++  |+- .+.+  |+.++..+++....   +++.+   .++.++.|.++..+.+.
T Consensus       161 lpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        161 LPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             hHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence            999987  553 4555  88888887776322   45553   67778888888777654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.43  E-value=2.3e-12  Score=134.07  Aligned_cols=164  Identities=12%  Similarity=0.172  Sum_probs=104.4

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCC
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA   62 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~   62 (337)
                      ..+++++.  +-+.+..+||+||+|||||++++.+|+.+++.                        ++.++.+      .
T Consensus        26 ~~L~~aL~--~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa------s   97 (830)
T PRK07003         26 RALTHALD--GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA------S   97 (830)
T ss_pred             HHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc------c
Confidence            34445544  33678899999999999999999999998752                        2222221      1


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694           63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP  142 (337)
Q Consensus        63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~  142 (337)
                      ..+...++++.+.+...-..++..|+||||+|.+...            ..+ .|+..++             +...++.
T Consensus        98 ~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~------------A~N-ALLKtLE-------------EPP~~v~  151 (830)
T PRK07003         98 NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH------------AFN-AMLKTLE-------------EPPPHVK  151 (830)
T ss_pred             cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH------------HHH-HHHHHHH-------------hcCCCeE
Confidence            1223345666655521112455689999999976321            122 3333444             4456789


Q ss_pred             EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHH---HHHhcCCCchhhH
Q 019694          143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDI---VKLVDTFPGQSID  206 (337)
Q Consensus       143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~l---a~l~~gf~gadl~  206 (337)
                      +|++||+++.|.+.++.  |+-++.+- ++.++..++++.++..+++.  .+.+   ++.++|--...|.
T Consensus       152 FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALs  219 (830)
T PRK07003        152 FILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALS  219 (830)
T ss_pred             EEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            99999999999999876  66544333 78888899998888776654  4434   4444443333333

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.43  E-value=1.6e-12  Score=130.18  Aligned_cols=136  Identities=15%  Similarity=0.248  Sum_probs=90.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+||+||||||||++|+.+|+.++..                        ++.++++      .......+|++.+
T Consensus        38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e  111 (484)
T PRK14956         38 KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRD  111 (484)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh------hcccHHHHHHHHH
Confidence            467789999999999999999999998763                        2222221      0112344566555


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..++..|+||||+|.+...            ..+ .|+..++             ++...+++|++|+.++.|.
T Consensus       112 ~l~~~p~~g~~KV~IIDEah~Ls~~------------A~N-ALLKtLE-------------EPp~~viFILaTte~~kI~  165 (484)
T PRK14956        112 NVKFAPMGGKYKVYIIDEVHMLTDQ------------SFN-ALLKTLE-------------EPPAHIVFILATTEFHKIP  165 (484)
T ss_pred             HHHhhhhcCCCEEEEEechhhcCHH------------HHH-HHHHHhh-------------cCCCceEEEeecCChhhcc
Confidence            5422223456789999999976321            222 3333334             4456788999999999999


Q ss_pred             chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC
Q 019694          155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l  188 (337)
                      ++++.  |+-.+... ++.++..+.++.++...++
T Consensus       166 ~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi  198 (484)
T PRK14956        166 ETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENV  198 (484)
T ss_pred             HHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence            99986  66554444 7777777777777665555

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.41  E-value=1.3e-13  Score=121.24  Aligned_cols=127  Identities=12%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      |-..+||.||+|||||.+|+++|+.+..    +++.++++++....  +....+...+..+...+......||||||||+
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            4456889999999999999999999996    99999999887611  11122233333332222222334999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      ...+.  +....+....+.+.|+.+++.-+...  +........++++|+|+|--..
T Consensus        80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d--~~g~~vd~~n~ifI~Tsn~~~~  132 (171)
T PF07724_consen   80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTD--SYGRTVDTSNIIFIMTSNFGAE  132 (171)
T ss_dssp             CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEE--TTCCEEEGTTEEEEEEESSSTH
T ss_pred             ccccc--cccchhhHHHHHHHHHHHhcccceec--ccceEEEeCCceEEEecccccc
Confidence            98763  34456777788899999998433221  1112345788999999997553

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.40  E-value=5e-12  Score=127.52  Aligned_cols=148  Identities=12%  Similarity=0.152  Sum_probs=96.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|.++|||||||||||++|+++|+.++.                        .++.++++.      ..+...+|.+..
T Consensus        34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~  107 (472)
T PRK14962         34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD  107 (472)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence            56888999999999999999999999865                        233443321      122345566555


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..+...||||||+|.+..             .....|+..++             ...+.+.+|++||.++.++
T Consensus       108 ~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~  161 (472)
T PRK14962        108 AVGYRPMEGKYKVYIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSHVVFVLATTNLEKVP  161 (472)
T ss_pred             HHhhChhcCCeEEEEEEChHHhHH-------------HHHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence            542111134567999999987631             11223444444             2334577787888888999


Q ss_pred             chhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCC
Q 019694          155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFP  201 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~  201 (337)
                      ++++.  |+. .+.+  |+.++...+++..+...  .++.+.+..++....
T Consensus       162 ~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~  209 (472)
T PRK14962        162 PTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS  209 (472)
T ss_pred             HHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence            99987  554 3444  88889888888887654  455566665555433

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.40  E-value=1.5e-12  Score=137.78  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=95.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-----CCCCChHHHH----HHHHHHHHHHHHhcCceEEEecc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-----~~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      ..+||+||||||||++|+++|+.++.+++.++++++..     .++|.+...+    ...+..+   ++....+||||||
T Consensus       489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE  565 (758)
T PRK11034        489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE  565 (758)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence            46899999999999999999999999999999887643     2223221111    1122222   2455669999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----------------------
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----------------------  150 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~----------------------  150 (337)
                      ||++..             .+.+.|++++|+-....-.|  ......+++||+|||.-                      
T Consensus       566 ieka~~-------------~v~~~LLq~ld~G~ltd~~g--~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~  630 (758)
T PRK11034        566 IEKAHP-------------DVFNLLLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME  630 (758)
T ss_pred             HhhhhH-------------HHHHHHHHHHhcCeeecCCC--ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence            998631             35667778887432221111  12345788999999932                      


Q ss_pred             ---CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          151 ---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       151 ---~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                         ..+.|.|+.  |+|.++.+  .+.++..+|+...+
T Consensus       631 ~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l  666 (758)
T PRK11034        631 EIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI  666 (758)
T ss_pred             HHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence               125577764  89988877  67788888876554

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.40  E-value=2.4e-12  Score=132.35  Aligned_cols=164  Identities=13%  Similarity=0.185  Sum_probs=104.9

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCCccc
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGELE   58 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s~l~   58 (337)
                      .+++++.  .-+.+..+||+||+|||||++|+.+|+.+...                             ++.++.+   
T Consensus        27 ~L~~al~--~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa---  101 (700)
T PRK12323         27 ALTHALE--QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA---  101 (700)
T ss_pred             HHHHHHH--hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc---
Confidence            4444444  33678899999999999999999999998761                             2222221   


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC
Q 019694           59 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN  138 (337)
Q Consensus        59 ~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~  138 (337)
                         .......+|++.+.+...-..++..|+||||+|.+...            ..+ .|+..++             +..
T Consensus       102 ---s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------AaN-ALLKTLE-------------EPP  152 (700)
T PRK12323        102 ---SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------AFN-AMLKTLE-------------EPP  152 (700)
T ss_pred             ---ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------HHH-HHHHhhc-------------cCC
Confidence               01123445666655422223556789999999976321            223 3434444             456


Q ss_pred             CCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--H---HHHHHhcCCCchhhHh
Q 019694          139 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--D---DIVKLVDTFPGQSIDF  207 (337)
Q Consensus       139 ~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~---~la~l~~gf~gadl~~  207 (337)
                      .++.+|++||+++.|.+.++.  |+-.+..- ++.++..+.++.++...++..  +   .|++.++|-....+.+
T Consensus       153 ~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsL  225 (700)
T PRK12323        153 EHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSL  225 (700)
T ss_pred             CCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            788999999999999999886  55443333 888888888888776665543  3   3444555544444433

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.39  E-value=1e-12  Score=131.99  Aligned_cols=178  Identities=19%  Similarity=0.243  Sum_probs=107.6

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~   78 (337)
                      .+...++.+...++ .....++||||||||||+|++++++++     +..++.+++.++.+.+...........|..   
T Consensus       132 ~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~---  207 (450)
T PRK00149        132 LAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKE---  207 (450)
T ss_pred             HHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHH---
Confidence            34455555555444 223569999999999999999999987     556778887766543322110000111221   


Q ss_pred             HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Cc
Q 019694           79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LY  154 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld  154 (337)
                        +-..+.+|+|||||.+.++..       .    ...|+.+++        ..   ...++ .+|+|+|. |..   ++
T Consensus       208 --~~~~~dlLiiDDi~~l~~~~~-------~----~~~l~~~~n--------~l---~~~~~-~iiits~~~p~~l~~l~  262 (450)
T PRK00149        208 --KYRSVDVLLIDDIQFLAGKER-------T----QEEFFHTFN--------AL---HEAGK-QIVLTSDRPPKELPGLE  262 (450)
T ss_pred             --HHhcCCEEEEehhhhhcCCHH-------H----HHHHHHHHH--------HH---HHCCC-cEEEECCCCHHHHHHHH
Confidence              122578999999998754321       1    112222222        11   01122 35556654 344   66


Q ss_pred             chhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694          155 APLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       155 ~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      +.|..  ||.  ..+.+  |+.++|.+|++..+...  .++.+.+..+++.+.+.--+..+++.
T Consensus       263 ~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~  324 (450)
T PRK00149        263 ERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN  324 (450)
T ss_pred             HHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence            77664  665  45555  99999999999988754  56778888888888875444445544

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.38  E-value=7.2e-12  Score=128.32  Aligned_cols=164  Identities=19%  Similarity=0.314  Sum_probs=103.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH----hcCceEEEecc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMIND   92 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~----~~~p~Il~IDE   92 (337)
                      +-++.|++||+||||-||||||+.||+++|+.++.|++|+-      .+...++.....|..+-.    ..+|.||+|||
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDE  395 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDE  395 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEec
Confidence            44555899999999999999999999999999999999963      234455555555532222    37899999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhC--CCccccCCCc-c--ccC---CCCCceEEEEeCCCCCCcchhccCCC-c
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIAD--NPTCVQLPGM-Y--NKE---ENPRVPIIVTGNDFSTLYAPLIRDGR-M  163 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld--~~~~~~~~g~-~--~~~---~~~~V~vI~TTN~~~~ld~aLlR~gR-~  163 (337)
                      ||...             .....+++.++.  +++..--.+. .  ...   ..-..||||.+|+   |+.+-||+-| +
T Consensus       396 IDGa~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~  459 (877)
T KOG1969|consen  396 IDGAP-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPF  459 (877)
T ss_pred             ccCCc-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccc
Confidence            99421             111222333332  2211111110 0  000   1124599999998   6666677666 5


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG  202 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g  202 (337)
                      -.++.+  |......+-++.+...++  .+...|..+++-+.+
T Consensus       460 A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~  502 (877)
T KOG1969|consen  460 AEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN  502 (877)
T ss_pred             eEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence            566666  555555666777766554  455677777765544

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.38  E-value=8.6e-12  Score=116.01  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=103.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ...=.+|||||||.||||||+.+|+++|.++-..++..+..     +..+ -.++.      .-....|||||||..+..
T Consensus        50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-----~gDl-aaiLt------~Le~~DVLFIDEIHrl~~  117 (332)
T COG2255          50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-----PGDL-AAILT------NLEEGDVLFIDEIHRLSP  117 (332)
T ss_pred             CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-----hhhH-HHHHh------cCCcCCeEEEehhhhcCh
Confidence            45678999999999999999999999999999988875532     2111 11111      223557999999987643


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-----ccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-----NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-----~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      .             +...|.-.+++-..--+-|.-     ..-+.+..-+|++|.+...|..||.-  ||-....+  .+
T Consensus       118 ~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~  182 (332)
T COG2255         118 A-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYT  182 (332)
T ss_pred             h-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCC
Confidence            2             222333233321111111110     01234556799999999999999975  66655555  99


Q ss_pred             HHHHHHHHHHhccCCCCC--H---HHHHHHhcCCCc
Q 019694          172 REDRIGVCKGIFRNDNVA--D---DDIVKLVDTFPG  202 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l~--~---~~la~l~~gf~g  202 (337)
                      .++..+|+.......++.  .   .+|++.+.|-+-
T Consensus       183 ~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR  218 (332)
T COG2255         183 VEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR  218 (332)
T ss_pred             HHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence            999999988777655444  3   566666666664

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.38  E-value=1.4e-12  Score=129.26  Aligned_cols=177  Identities=18%  Similarity=0.238  Sum_probs=104.3

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +...++.+...++ .....++||||||+|||+|++++++++     +..++.+++.++...+.......-...|...   
T Consensus       121 a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~---  196 (405)
T TIGR00362       121 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEK---  196 (405)
T ss_pred             HHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHH---
Confidence            4455555555444 234579999999999999999999987     5678888877654332211000000112111   


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Ccc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYA  155 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~  155 (337)
                        -..+.+|+|||||.+.++..  .         ...|+.+++        ..   ...++ .+|+|+|. |+.   +++
T Consensus       197 --~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n--------~~---~~~~~-~iiits~~~p~~l~~l~~  251 (405)
T TIGR00362       197 --YRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN--------AL---HENGK-QIVLTSDRPPKELPGLEE  251 (405)
T ss_pred             --HHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH--------HH---HHCCC-CEEEecCCCHHHHhhhhh
Confidence              12367999999998754321  1         112233333        11   01122 35555554 443   556


Q ss_pred             hhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694          156 PLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       156 aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      .+..  ||.  ..+.+  |+.++|.+|++..+...  .++.+.+..+++.+.+.--+..+++.
T Consensus       252 ~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~  312 (405)
T TIGR00362       252 RLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALN  312 (405)
T ss_pred             hhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence            6664  665  34555  99999999999888654  45667777777777764333334443

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.37  E-value=2.5e-12  Score=123.25  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=98.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC--CCCChHHH----------HHHHHHHHHHHHHhcCc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKL----------IRQRYREAADIIKKGKM   85 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~--~~Ge~~~~----------ir~~f~~A~~~~~~~~p   85 (337)
                      +...+.|||.||||||||++++.+|+.++++++.++++...+.  ++|.....          ....+-.|     ...+
T Consensus        61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g  135 (327)
T TIGR01650        61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHN  135 (327)
T ss_pred             HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCC
Confidence            3446779999999999999999999999999999988776554  45543211          11222333     2467


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCC------------C
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------------T  152 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~------------~  152 (337)
                      ++|++||||..-.             .+...|..+++....+.+++.... ...+...||+|+|...            .
T Consensus       136 ~illlDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~  202 (327)
T TIGR01650       136 VALCFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQ  202 (327)
T ss_pred             eEEEechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeec
Confidence            8999999996421             123344455564323333332112 2445778999999754            4


Q ss_pred             CcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                      +++|++-  ||-..+.+  |+.++-.+|+....
T Consensus       203 l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       203 INQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA  233 (327)
T ss_pred             CCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence            5788875  88777766  99999999987664

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.36  E-value=2.2e-12  Score=108.67  Aligned_cols=120  Identities=18%  Similarity=0.181  Sum_probs=73.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc------CCC---CChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------GNA---GEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~------~~~---Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .|+|+||||||||++|+.+|+.++.+++.++.+....      .+.   +.. ......+-+|     ...+++++||||
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~-~~~~~~l~~a-----~~~~~il~lDEi   74 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF-EFKDGPLVRA-----MRKGGILVLDEI   74 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT-CEEE-CCCTT-----HHEEEEEEESSC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc-cccccccccc-----ccceeEEEECCc
Confidence            4899999999999999999999999998887775321      111   000 0000000111     126899999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC------CceEEEEeCCCC----CCcchhccCCCc
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIRDGRM  163 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~------~V~vI~TTN~~~----~ld~aLlR~gR~  163 (337)
                      +..-             ..+.+.|+.++++-......+........      +..+|+|+|..+    .+++||+|  ||
T Consensus        75 n~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf  139 (139)
T PF07728_consen   75 NRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF  139 (139)
T ss_dssp             GG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred             ccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence            8532             23455666777754433222221111122      489999999999    99999998  54

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.36  E-value=9.1e-12  Score=128.37  Aligned_cols=156  Identities=13%  Similarity=0.170  Sum_probs=100.5

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN   61 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~   61 (337)
                      ...+++++.  +-+.+.++||+||||||||++|+++|+.++..                        ++.+++++     
T Consensus        24 v~~L~~aI~--~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-----   96 (702)
T PRK14960         24 SRALSSALE--RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-----   96 (702)
T ss_pred             HHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-----
Confidence            334445444  33668899999999999999999999998752                        23333221     


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694           62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV  141 (337)
Q Consensus        62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V  141 (337)
                       ......+|++...+...-..++..|+||||+|.+...            . ...|+..++             .....+
T Consensus        97 -~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~------------A-~NALLKtLE-------------EPP~~v  149 (702)
T PRK14960         97 -RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH------------S-FNALLKTLE-------------EPPEHV  149 (702)
T ss_pred             -cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH------------H-HHHHHHHHh-------------cCCCCc
Confidence             1123445665555422112456789999999976321            1 223444544             334667


Q ss_pred             eEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHh
Q 019694          142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLV  197 (337)
Q Consensus       142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~  197 (337)
                      .+|++|+++..++++++.  |+.++-.- ++.++..+.++.++...++.  .+.+..++
T Consensus       150 ~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA  206 (702)
T PRK14960        150 KFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA  206 (702)
T ss_pred             EEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            889999999999988875  66543333 88889888888888766544  44444343

>PLN03025 replication factor C subunit; Provisional

Probab=99.36  E-value=4.1e-12  Score=122.15  Aligned_cols=145  Identities=12%  Similarity=0.173  Sum_probs=92.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHH---HHhcCceEEEecccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLMINDLD   94 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~---~~~~~p~Il~IDEiD   94 (337)
                      .+|||||||||||++|+++|+++.     ..++.++.++..+      ...+++..+.....   ...+...|++|||+|
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d  109 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD  109 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence            489999999999999999999973     2345555543211      12344433322110   012457899999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .+....             .+.|...++             .......+|++||..+.+.++|..  |+. .+.+  |+.
T Consensus       110 ~lt~~a-------------q~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~  160 (319)
T PLN03025        110 SMTSGA-------------QQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSD  160 (319)
T ss_pred             hcCHHH-------------HHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhh-cccCCCCCH
Confidence            864211             223333333             122345688899999999999886  443 3444  889


Q ss_pred             HHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694          173 EDRIGVCKGIFRNDN--VADDDIVKLVDTFPG  202 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g  202 (337)
                      ++...+++.++...+  ++.+.+..++....|
T Consensus       161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g  192 (319)
T PLN03025        161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADG  192 (319)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            999999888887665  456777777665544

>PRK06893 DNA replication initiation factor; Validated

Probab=99.35  E-value=4.5e-12  Score=116.39  Aligned_cols=145  Identities=17%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      .++||||||||||+|++++|+++   +.....++.....        ......++..      .+..+|+||||+.+.+.
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~------~~~dlLilDDi~~~~~~  106 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL------EQQDLVCLDDLQAVIGN  106 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc------ccCCEEEEeChhhhcCC
Confidence            58999999999999999999986   3333444432110        0111122222      34579999999987543


Q ss_pred             CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCCCc---chhccCCCceEEEeC--CCHH
Q 019694          100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus       100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~ld---~aLlR~gR~d~~i~~--P~~~  173 (337)
                      ..           ....|.++++        ..   ...++.++|.|+| .|..++   +.|..+.+....+.+  |+.+
T Consensus       107 ~~-----------~~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e  164 (229)
T PRK06893        107 EE-----------WELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE  164 (229)
T ss_pred             hH-----------HHHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence            21           0112333333        11   1123334455555 466554   788876666677777  9999


Q ss_pred             HHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694          174 DRIGVCKGIFRND--NVADDDIVKLVDTFPGQ  203 (337)
Q Consensus       174 ~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga  203 (337)
                      +|.+|++......  .++.+.+.-++..+++.
T Consensus       165 ~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d  196 (229)
T PRK06893        165 QKIIVLQRNAYQRGIELSDEVANFLLKRLDRD  196 (229)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence            9999998777544  45667777777777754

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=4.2e-12  Score=119.63  Aligned_cols=102  Identities=19%  Similarity=0.266  Sum_probs=80.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc-ccCCCCChHHHHH-HHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIR-QRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l-~~~~~Ge~~~~ir-~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      ..|||.||.|||||+||+.+|+.+++||-.-++..| ..+|+|+.-.+|- .+...|.--+.+....||+|||||+++.+
T Consensus        98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark  177 (408)
T COG1219          98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK  177 (408)
T ss_pred             ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence            569999999999999999999999999999999998 6789999765543 34444422233557789999999999876


Q ss_pred             CCC-CcccchhhHhHHHHHHhhhCC
Q 019694          100 MGG-TTQYTVNNQMVNATLMNIADN  123 (337)
Q Consensus       100 ~~~-~~~~~~~~~~v~~~Ll~lld~  123 (337)
                      ..+ +-...+...-++|.|+.++..
T Consensus       178 SeN~SITRDVSGEGVQQALLKiiEG  202 (408)
T COG1219         178 SENPSITRDVSGEGVQQALLKIIEG  202 (408)
T ss_pred             CCCCCcccccCchHHHHHHHHHHcC
Confidence            542 233556777899999999984

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.34  E-value=1.6e-11  Score=130.32  Aligned_cols=140  Identities=16%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             CcE-EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694           21 PLI-LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        21 p~g-iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      |.| +||+||||||||++|+++|+.++.+++.++++++.++            |+|...   ...+.++   ++....+|
T Consensus       483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~---~~~l~~~---~~~~p~~V  556 (731)
T TIGR02639       483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ---GGLLTEA---VRKHPHCV  556 (731)
T ss_pred             CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch---hhHHHHH---HHhCCCeE
Confidence            554 7899999999999999999999999999998886432            333211   0112222   24556789


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----------------
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----------------  151 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----------------  151 (337)
                      |||||||++..             .+...|++++|+-...  ++.....+..+++||+|||.-.                
T Consensus       557 vllDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~  621 (731)
T TIGR02639       557 LLLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVE  621 (731)
T ss_pred             EEEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence            99999997532             2456777888843211  1111223456789999998742                


Q ss_pred             ---------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          152 ---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       152 ---------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                               .+.|+|+  +|+|.++.+  .+.++..+|+...+
T Consensus       622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L  662 (731)
T TIGR02639       622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFV  662 (731)
T ss_pred             HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHH
Confidence                     2456665  589888877  78888888876655

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.33  E-value=1.2e-11  Score=116.14  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=104.3

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAA   77 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~   77 (337)
                      .++++++|-+...+   --.+|||||||||||+.|+++|+++..+      +...+.|+..+..++.. +.  .-|..-.
T Consensus        43 ~vV~~L~~a~~~~~---lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~-Ki--k~fakl~  116 (346)
T KOG0989|consen   43 HVVQVLKNALLRRI---LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE-KI--KNFAKLT  116 (346)
T ss_pred             HHHHHHHHHHhhcC---CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh-hh--cCHHHHh
Confidence            46667777766622   2368999999999999999999998762      23334443332222111 10  2233321


Q ss_pred             HHHH-----hcCc-eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           78 DIIK-----KGKM-CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        78 ~~~~-----~~~p-~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      ...+     ...| -|++|||.|.+...             ..++|...++             .....+.+|..||..+
T Consensus       117 ~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcnyls  170 (346)
T KOG0989|consen  117 VLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICNYLS  170 (346)
T ss_pred             hccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcCChh
Confidence            1111     1122 69999999987432             2345555555             3345678999999999


Q ss_pred             CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCchhh
Q 019694          152 TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSI  205 (337)
Q Consensus       152 ~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~gadl  205 (337)
                      .|+.++..  |+-++.+- ...+.....++.+..+++++. ++.-++.-..++.||
T Consensus       171 rii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL  224 (346)
T KOG0989|consen  171 RIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL  224 (346)
T ss_pred             hCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence            99999986  88886666 444556677788887777765 333334444455444

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.32  E-value=4.3e-11  Score=116.43  Aligned_cols=144  Identities=15%  Similarity=0.213  Sum_probs=87.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCccccC----------CC--CC----hHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------NA--GE----PAKLIRQRY   73 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~~----------~~--Ge----~~~~ir~~f   73 (337)
                      ..|..++|+||||||||++++++++++.         +.++.+++....+.          ..  |.    ......+.|
T Consensus        38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  117 (365)
T TIGR02928        38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF  117 (365)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence            4466799999999999999999998753         45777777543221          00  10    000011222


Q ss_pred             HHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-
Q 019694           74 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-  151 (337)
Q Consensus        74 ~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-  151 (337)
                      ....+.+. ...+.||+|||+|.+.+...         ..+. .|+.+.+          +......++.+|++||+++ 
T Consensus       118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~---------~~L~-~l~~~~~----------~~~~~~~~v~lI~i~n~~~~  177 (365)
T TIGR02928       118 RRLYKELNERGDSLIIVLDEIDYLVGDDD---------DLLY-QLSRARS----------NGDLDNAKVGVIGISNDLKF  177 (365)
T ss_pred             HHHHHHHHhcCCeEEEEECchhhhccCCc---------HHHH-hHhcccc----------ccCCCCCeEEEEEEECCcch
Confidence            22222223 45688999999999872211         1121 2222211          1112346789999999986 


Q ss_pred             --CCcchhccCCCce-EEEeC--CCHHHHHHHHHHhcc
Q 019694          152 --TLYAPLIRDGRME-KFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       152 --~ld~aLlR~gR~d-~~i~~--P~~~~R~~Il~~~~~  184 (337)
                        .+++.+.+  ||. ..+.+  ++.++..+|++..+.
T Consensus       178 ~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       178 RENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE  213 (365)
T ss_pred             HhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence              47777765  443 34555  889999999887764

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.32  E-value=1.4e-11  Score=101.66  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      ..+.++|+||||||||++++.+++.+   +.+++.++..+.............. .+...........+.+|+|||++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~   96 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL   96 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence            45789999999999999999999998   8888888887654432221110000 0111111224567899999999875


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccCCCceEEEeC
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWA  169 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~gR~d~~i~~  169 (337)
                      ...             ....++.++..       .........++.+|++||...  .+++.+..  |++..+.+
T Consensus        97 ~~~-------------~~~~~~~~i~~-------~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~  149 (151)
T cd00009          97 SRG-------------AQNALLRVLET-------LNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVI  149 (151)
T ss_pred             hHH-------------HHHHHHHHHHh-------cCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeec
Confidence            110             01122222220       000001246789999999887  67777664  88776665

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.32  E-value=8.7e-12  Score=125.00  Aligned_cols=177  Identities=15%  Similarity=0.230  Sum_probs=101.8

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChH-HHHHHHHHHHHHH
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPA-KLIRQRYREAADI   79 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A~~~   79 (337)
                      ...++.+...++.  ...++||||||+|||+|++++++++     +..++.+++.++...+..... ..+ .-|...   
T Consensus       117 ~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~---  190 (440)
T PRK14088        117 YHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREK---  190 (440)
T ss_pred             HHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHH---
Confidence            3444444444443  3459999999999999999999986     456777777665433211000 000 112221   


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-CCCCC---Ccc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-NDFST---LYA  155 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-N~~~~---ld~  155 (337)
                       ....+.+|+|||++.+.+..+  .     ...+..++-.+.+               ..+ .+|+|| +.|..   +.+
T Consensus       191 -~~~~~dvLlIDDi~~l~~~~~--~-----q~elf~~~n~l~~---------------~~k-~iIitsd~~p~~l~~l~~  246 (440)
T PRK14088        191 -YRKKVDVLLIDDVQFLIGKTG--V-----QTELFHTFNELHD---------------SGK-QIVICSDREPQKLSEFQD  246 (440)
T ss_pred             -HHhcCCEEEEechhhhcCcHH--H-----HHHHHHHHHHHHH---------------cCC-eEEEECCCCHHHHHHHHH
Confidence             123688999999998754322  1     1112222211212               122 455555 45554   445


Q ss_pred             hhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhHhHHHHH
Q 019694          156 PLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      .+..+......+.+  |+.+.|.+|++......  .++.+.+..+++.+++.--+..+++.
T Consensus       247 rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~  307 (440)
T PRK14088        247 RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII  307 (440)
T ss_pred             HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence            56542233345555  99999999999887644  56667777888887764333334443

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.32  E-value=1.5e-11  Score=126.43  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=101.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      .++|||++|+|||+|++++++++     +..++.++..++.+.+.........+.|.+-     -....+|+||||+.+.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~  390 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLE  390 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhcccc
Confidence            48999999999999999999986     4677888887765543321111011223321     2356899999999876


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----CCCcchhccCCCceEEEeC--CC
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----STLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~----~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      ++..  .     ...    |.++++        ..    ...+..||+|+|.+    ..+++.|..+...-..+.+  |+
T Consensus       391 gke~--t-----qee----LF~l~N--------~l----~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD  447 (617)
T PRK14086        391 DKES--T-----QEE----FFHTFN--------TL----HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPE  447 (617)
T ss_pred             CCHH--H-----HHH----HHHHHH--------HH----HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCC
Confidence            4332  1     112    223333        11    01223577788874    3577888764444566666  99


Q ss_pred             HHHHHHHHHHhccCCCC--CHHHHHHHhcCCCchhhHhHHHHH
Q 019694          172 REDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l--~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      .+.|.+|++..+...++  +.+.+.-++..++..--+..+++.
T Consensus       448 ~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~  490 (617)
T PRK14086        448 LETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI  490 (617)
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence            99999999998876654  457777777777764333334433

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.30  E-value=3.9e-11  Score=127.03  Aligned_cols=166  Identities=13%  Similarity=0.120  Sum_probs=100.3

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE------Ee--cCCccccC-------CCC---ChHHHH
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI------MM--SAGELESG-------NAG---EPAKLI   69 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i------~v--s~s~l~~~-------~~G---e~~~~i   69 (337)
                      .+++++..  -+.|..+||+||||||||++|+++|+.++..-.      ..  ++-.+..+       +-+   .....+
T Consensus        27 ~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI  104 (944)
T PRK14949         27 ALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT  104 (944)
T ss_pred             HHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH
Confidence            34555443  367889999999999999999999999876411      00  00000000       001   122345


Q ss_pred             HHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694           70 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND  149 (337)
Q Consensus        70 r~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~  149 (337)
                      |++...+...-..+...|+||||+|.+..             .....|+..+.             +....+.+|++|+.
T Consensus       105 ReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE-------------EPP~~vrFILaTTe  158 (944)
T PRK14949        105 RELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE-------------EPPEHVKFLLATTD  158 (944)
T ss_pred             HHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-------------ccCCCeEEEEECCC
Confidence            66555542222245678999999997631             11234444444             44567788888999


Q ss_pred             CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-----HHHHHHhcCCCchh
Q 019694          150 FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-----DDIVKLVDTFPGQS  204 (337)
Q Consensus       150 ~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-----~~la~l~~gf~gad  204 (337)
                      +..|.+.++.  |+-+ +.+  ++.++..+.++.++...++..     ..|++.+.|-.+..
T Consensus       159 ~~kLl~TIlS--RCq~-f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~A  217 (944)
T PRK14949        159 PQKLPVTVLS--RCLQ-FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA  217 (944)
T ss_pred             chhchHHHHH--hheE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999988876  5543 444  778888888877776555443     33444455444433

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.29  E-value=4.5e-11  Score=124.12  Aligned_cols=165  Identities=15%  Similarity=0.192  Sum_probs=102.1

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-------------ecCC---ccc--cCCCCChHH
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAG---ELE--SGNAGEPAK   67 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-------------vs~s---~l~--~~~~Ge~~~   67 (337)
                      +..+++++..  -+.|.++||+||||||||++|+++|+.++..-..             +..+   ++.  +...+.+..
T Consensus        25 v~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd  102 (709)
T PRK08691         25 VKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID  102 (709)
T ss_pred             HHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH
Confidence            3445555553  3678999999999999999999999997653110             0001   010  001122334


Q ss_pred             HHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe
Q 019694           68 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG  147 (337)
Q Consensus        68 ~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT  147 (337)
                      .|+++...+...-..+...||||||+|.+..            ...+ .|+..++             +....+.+|++|
T Consensus       103 ~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A~N-ALLKtLE-------------EPp~~v~fILaT  156 (709)
T PRK08691        103 NIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SAFN-AMLKTLE-------------EPPEHVKFILAT  156 (709)
T ss_pred             HHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HHHH-HHHHHHH-------------hCCCCcEEEEEe
Confidence            5677766552111235668999999986531            1122 3444444             334667899999


Q ss_pred             CCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHhcCC
Q 019694          148 NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTF  200 (337)
Q Consensus       148 N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~~gf  200 (337)
                      |+++.+.+.++  +|+-.+-.- ++.++...+++.++...++.  ...+..++...
T Consensus       157 td~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A  210 (709)
T PRK08691        157 TDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA  210 (709)
T ss_pred             CCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence            99999999987  466443322 88899899998888877654  44444444433

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.29  E-value=2.5e-11  Score=118.79  Aligned_cols=148  Identities=12%  Similarity=0.155  Sum_probs=89.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe--------cC--------Cccc--cCCCCChHHHHHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--------SA--------GELE--SGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v--------s~--------s~l~--~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      +.|..+||+||||+|||++|+++|+++.......        ++        .++.  +.........++++...+...-
T Consensus        36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p  115 (363)
T PRK14961         36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSP  115 (363)
T ss_pred             CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCc
Confidence            5788899999999999999999999986421100        00        0111  0000012233455544431000


Q ss_pred             HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      ..+...|++|||+|.+..            ...+ .|+..++             +....+.+|++|++++.+.+++.. 
T Consensus       116 ~~~~~kviIIDEa~~l~~------------~a~n-aLLk~lE-------------e~~~~~~fIl~t~~~~~l~~tI~S-  168 (363)
T PRK14961        116 SKSRFKVYLIDEVHMLSR------------HSFN-ALLKTLE-------------EPPQHIKFILATTDVEKIPKTILS-  168 (363)
T ss_pred             ccCCceEEEEEChhhcCH------------HHHH-HHHHHHh-------------cCCCCeEEEEEcCChHhhhHHHHh-
Confidence            123457999999997631            1112 2333344             234567788888889999999875 


Q ss_pred             CCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHH
Q 019694          161 GRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVK  195 (337)
Q Consensus       161 gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~  195 (337)
                       |+- .+.+  |+.++..++++..+...+  ++.+.+..
T Consensus       169 -Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~  205 (363)
T PRK14961        169 -RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKL  205 (363)
T ss_pred             -hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence             553 3455  889999999988887665  45544433

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.29  E-value=2.8e-11  Score=121.36  Aligned_cols=164  Identities=15%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      -..++||||||+|||+|++++++++   +..++.++..++...+.......-.+.|...     -....+|+||||+.+.
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~  215 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFS  215 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhc
Confidence            3579999999999999999999976   5777888776543321100000000122221     2467799999999875


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC----CCCcchhccCCCce--EEEeC--
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYWA--  169 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~----~~ld~aLlR~gR~d--~~i~~--  169 (337)
                      ++..  .     .+.+..++-.+.+                .+..+|+|||.+    ..+++.|..  ||.  ..+.+  
T Consensus       216 ~k~~--~-----qeelf~l~N~l~~----------------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~  270 (445)
T PRK12422        216 GKGA--T-----QEEFFHTFNSLHT----------------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHP  270 (445)
T ss_pred             CChh--h-----HHHHHHHHHHHHH----------------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCC
Confidence            4321  1     1122222211111                123677777763    356778876  664  66666  


Q ss_pred             CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694          170 PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALRAR  214 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl~~~~alra~  214 (337)
                      |+.++|.+|++......+  ++.+.+.-++..+++.--+..+++...
T Consensus       271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l  317 (445)
T PRK12422        271 LTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLL  317 (445)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999999988876654  566777778888886544444555443

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.28  E-value=3.1e-11  Score=115.84  Aligned_cols=153  Identities=16%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCC-------------CCC-------hHHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA   77 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~-------------~Ge-------~~~~ir~~f~~A~   77 (337)
                      .+||+||||||||++|+++++++.     .+++.++++++....             .+.       ....++.+.+...
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA  117 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence            689999999999999999999874     346777776653221             011       0112222222221


Q ss_pred             HHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694           78 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP  156 (337)
Q Consensus        78 ~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a  156 (337)
                      .... ...+.+|+|||+|.+...             ..+.|..++++             ......+|++|+.+..+.++
T Consensus       118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~~~~  171 (337)
T PRK12402        118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIMEQ-------------YSRTCRFIIATRQPSKLIPP  171 (337)
T ss_pred             hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHHh-------------ccCCCeEEEEeCChhhCchh
Confidence            1111 134569999999976321             11234344441             12234567777777788888


Q ss_pred             hccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhh
Q 019694          157 LIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI  205 (337)
Q Consensus       157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl  205 (337)
                      |..  |+.. +.+  |+.++...+++.++...+  ++.+.+..++... +.++
T Consensus       172 L~s--r~~~-v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdl  220 (337)
T PRK12402        172 IRS--RCLP-LFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDL  220 (337)
T ss_pred             hcC--CceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCH
Confidence            865  4433 333  889999999988877665  4556666666655 3344

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=7.1e-11  Score=125.98  Aligned_cols=147  Identities=12%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------------------------cEEecCCccccC
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESG   60 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------------------------~i~vs~s~l~~~   60 (337)
                      ..+++++.  .-+.+..+||+||+|||||++|+.+|+.+.+.                          ++.+++..    
T Consensus        25 ~~L~~~i~--~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas----   98 (824)
T PRK07764         25 EPLSTALD--SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS----   98 (824)
T ss_pred             HHHHHHHH--hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc----
Confidence            33444444  33678899999999999999999999998642                          12222110    


Q ss_pred             CCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCC
Q 019694           61 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR  140 (337)
Q Consensus        61 ~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~  140 (337)
                        ......||++-+.+...-......|+||||+|.+..             .....|+.+++             +....
T Consensus        99 --~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LE-------------EpP~~  150 (824)
T PRK07764         99 --HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVE-------------EPPEH  150 (824)
T ss_pred             --cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHh-------------CCCCC
Confidence              011234454433331111245678999999998732             11234555655             34456


Q ss_pred             ceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694          141 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       141 V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~  189 (337)
                      +.+|++|+.++.|.+.|+.  |+-.+-+. ++.++..+++..++...++.
T Consensus       151 ~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~  198 (824)
T PRK07764        151 LKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP  198 (824)
T ss_pred             eEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            7888888889999988875  44333222 78888888888888766663

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=6.6e-11  Score=120.18  Aligned_cols=152  Identities=14%  Similarity=0.182  Sum_probs=96.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe------------cCC--------ccc--cCCCCChHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM------------SAG--------ELE--SGNAGEPAKLIRQRYRE   75 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v------------s~s--------~l~--~~~~Ge~~~~ir~~f~~   75 (337)
                      -+.|.++||+||||||||++|+++|+.++..--..            ++.        ++.  +.....+...++++.+.
T Consensus        40 ~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~  119 (507)
T PRK06645         40 DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIES  119 (507)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHH
Confidence            36788999999999999999999999986531100            000        110  00011233456777766


Q ss_pred             HHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694           76 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA  155 (337)
Q Consensus        76 A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~  155 (337)
                      +...--.+...|++|||+|.+..            ...+ .|+..++             +....+.+|++|+.++.+++
T Consensus       120 a~~~P~~~~~KVvIIDEa~~Ls~------------~a~n-aLLk~LE-------------epp~~~vfI~aTte~~kI~~  173 (507)
T PRK06645        120 AEYKPLQGKHKIFIIDEVHMLSK------------GAFN-ALLKTLE-------------EPPPHIIFIFATTEVQKIPA  173 (507)
T ss_pred             HHhccccCCcEEEEEEChhhcCH------------HHHH-HHHHHHh-------------hcCCCEEEEEEeCChHHhhH
Confidence            62221245667999999987631            1122 3333334             34566788888889999999


Q ss_pred             hhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhc
Q 019694          156 PLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVD  198 (337)
Q Consensus       156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~  198 (337)
                      +++.  |+- .+.+  ++.++...+++.+++..++  +.+.+..++.
T Consensus       174 tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~  217 (507)
T PRK06645        174 TIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY  217 (507)
T ss_pred             HHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9876  443 3444  8999999999988877665  4444444433

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.28  E-value=2.7e-11  Score=109.88  Aligned_cols=162  Identities=16%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK   81 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~   81 (337)
                      +...++.+..   ...+..++|+||||||||++|+++++++   +.+++.++++++....        ...+...     
T Consensus        25 ~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~-----   88 (226)
T TIGR03420        25 LLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL-----   88 (226)
T ss_pred             HHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc-----
Confidence            3344444433   3457889999999999999999999876   4677888877654321        1222211     


Q ss_pred             hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCCCc---chh
Q 019694           82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APL  157 (337)
Q Consensus        82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~ld---~aL  157 (337)
                       ....+|+|||+|.+.....      .     ...|..+++        ..   .. .+..+|+|||. +..++   +.|
T Consensus        89 -~~~~lLvIDdi~~l~~~~~------~-----~~~L~~~l~--------~~---~~-~~~~iIits~~~~~~~~~~~~~L  144 (226)
T TIGR03420        89 -EQADLVCLDDVEAIAGQPE------W-----QEALFHLYN--------RV---RE-AGGRLLIAGRAAPAQLPLRLPDL  144 (226)
T ss_pred             -ccCCEEEEeChhhhcCChH------H-----HHHHHHHHH--------HH---HH-cCCeEEEECCCChHHCCcccHHH
Confidence             2346999999997643211      0     112222222        00   01 11256666664 33332   556


Q ss_pred             ccCCCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694          158 IRDGRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       158 lR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~  206 (337)
                      .++..+...+.+  |+.+++..+++.+....  .++.+.+..+...++|.-.+
T Consensus       145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~  197 (226)
T TIGR03420       145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGS  197 (226)
T ss_pred             HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence            643333466777  78899999988776543  56677788888876665443

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.28  E-value=4.8e-11  Score=123.84  Aligned_cols=153  Identities=12%  Similarity=0.156  Sum_probs=98.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.+..+||+||||||||++|+.+|+.++..                        ++.++++.      ......+|++.+
T Consensus        36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~  109 (647)
T PRK07994         36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLD  109 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHH
Confidence            578889999999999999999999998763                        12222211      012234565555


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..+...|+||||+|.+...            .. ..|+..++             ++...+.+|++|++++.|.
T Consensus       110 ~~~~~p~~g~~KV~IIDEah~Ls~~------------a~-NALLKtLE-------------EPp~~v~FIL~Tt~~~kLl  163 (647)
T PRK07994        110 NVQYAPARGRFKVYLIDEVHMLSRH------------SF-NALLKTLE-------------EPPEHVKFLLATTDPQKLP  163 (647)
T ss_pred             HHHhhhhcCCCEEEEEechHhCCHH------------HH-HHHHHHHH-------------cCCCCeEEEEecCCccccc
Confidence            5422112456789999999976321            12 23444444             4556788888899999999


Q ss_pred             chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH--H---HHHHHhcCCCchhhH
Q 019694          155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD--D---DIVKLVDTFPGQSID  206 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~--~---~la~l~~gf~gadl~  206 (337)
                      +.++.  |+- .+.+  ++.++..+.++.++...++..  .   .|++.++|-.+..+.
T Consensus       164 ~TI~S--RC~-~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~  219 (647)
T PRK07994        164 VTILS--RCL-QFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALS  219 (647)
T ss_pred             hHHHh--hhe-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence            98875  653 3445  888888888888876555543  2   345555554444333

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.27  E-value=4.5e-11  Score=97.49  Aligned_cols=126  Identities=17%  Similarity=0.190  Sum_probs=78.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccC--------------CCCChHHHHHHHHHHHHHHHHhc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~--------------~~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      +..++|+||||||||++++.+|..+...   ++.++.+.....              ........++..+..|    +..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL   77 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence            4679999999999999999999999875   777777654322              2223344555556666    766


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      .+.+|||||++.+.....    .    .......    .      ...........+..+|+|+|......+..+++ |+
T Consensus        78 ~~~viiiDei~~~~~~~~----~----~~~~~~~----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~  138 (148)
T smart00382       78 KPDVLILDEITSLLDAEQ----E----ALLLLLE----E------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF  138 (148)
T ss_pred             CCCEEEEECCcccCCHHH----H----HHHHhhh----h------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence            789999999998764322    0    0000000    0      00000113346678999999734444444444 77


Q ss_pred             eEEEeC
Q 019694          164 EKFYWA  169 (337)
Q Consensus       164 d~~i~~  169 (337)
                      +..+.+
T Consensus       139 ~~~~~~  144 (148)
T smart00382      139 DRRIVL  144 (148)
T ss_pred             ceEEEe
Confidence            777665

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.27  E-value=7.8e-11  Score=115.87  Aligned_cols=143  Identities=15%  Similarity=0.242  Sum_probs=86.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCcccc----------CCCC----ChHHHHHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAG----EPAKLIRQRYREAADII   80 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~----------~~~G----e~~~~ir~~f~~A~~~~   80 (337)
                      .|..++||||||||||++++.+++++     ++.++.+++....+          ...+    .......+.+....+.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l  133 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL  133 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence            45568999999999999999999887     56788887764321          1111    00011223333333333


Q ss_pred             H-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcch
Q 019694           81 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAP  156 (337)
Q Consensus        81 ~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~a  156 (337)
                      + ...+.||+|||+|.+..+.+        ...+ ..|+.+++            .....++.+|+++|..+   .+++.
T Consensus       134 ~~~~~~~viviDE~d~l~~~~~--------~~~l-~~l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~~  192 (394)
T PRK00411        134 DERDRVLIVALDDINYLFEKEG--------NDVL-YSLLRAHE------------EYPGARIGVIGISSDLTFLYILDPR  192 (394)
T ss_pred             HhcCCEEEEEECCHhHhhccCC--------chHH-HHHHHhhh------------ccCCCeEEEEEEECCcchhhhcCHH
Confidence            4 45678999999998872221        0122 22323322            11233788999999875   45666


Q ss_pred             hccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          157 LIRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      +..+.+. ..+.+  ++.++..+|++..+.
T Consensus       193 ~~s~~~~-~~i~f~py~~~e~~~il~~r~~  221 (394)
T PRK00411        193 VKSVFRP-EEIYFPPYTADEIFDILKDRVE  221 (394)
T ss_pred             HHhcCCc-ceeecCCCCHHHHHHHHHHHHH
Confidence            5442222 33445  788999999887764

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.26  E-value=1.4e-10  Score=121.80  Aligned_cols=141  Identities=16%  Similarity=0.190  Sum_probs=87.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCC----------------CC-ChHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------------AG-EPAKLIRQR   72 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~----------------~G-e~~~~ir~~   72 (337)
                      +...++|+|+||||||+.++.|.+++          .+.++.+++..+...+                .| .....+..+
T Consensus       780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL  859 (1164)
T PTZ00112        780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL  859 (1164)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence            33456799999999999999998776          2456788885533221                01 112233344


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC---
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND---  149 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~---  149 (337)
                      |....  -......||+|||||.+..+.             +..|.++++-          ......++.||+++|.   
T Consensus       860 F~~L~--k~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR~----------~~~s~SKLiLIGISNdlDL  914 (1164)
T PTZ00112        860 FNQNK--KDNRNVSILIIDEIDYLITKT-------------QKVLFTLFDW----------PTKINSKLVLIAISNTMDL  914 (1164)
T ss_pred             Hhhhh--cccccceEEEeehHhhhCccH-------------HHHHHHHHHH----------hhccCCeEEEEEecCchhc
Confidence            44320  013346799999999886431             1234444441          1123467899999997   


Q ss_pred             CCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccC
Q 019694          150 FSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRN  185 (337)
Q Consensus       150 ~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~  185 (337)
                      ++.|++.+..+....++.+- ++.+++.+|++..+..
T Consensus       915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~  951 (1164)
T PTZ00112        915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN  951 (1164)
T ss_pred             chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence            44566777654444333333 8999999998877753

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.26  E-value=7.4e-11  Score=124.40  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=94.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccccccC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM  100 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~~~  100 (337)
                      ..++||||||||||++|+++|+.++.+++.+++..       ...+.+++.+..+.+.+. .....+|||||||.+... 
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~-------~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-  124 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL-------AGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-  124 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh-------hhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence            36899999999999999999999999998887652       112334556666533333 346789999999875321 


Q ss_pred             CCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694          101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus       101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                                  ....|+..++               ...+.+|++|  |....++++++.+++   .+.+  ++.+++.
T Consensus       125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR~~---v~~l~pLs~edi~  174 (725)
T PRK13341        125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSRSR---LFRLKSLSDEDLH  174 (725)
T ss_pred             ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcccc---ceecCCCCHHHHH
Confidence                        1223333333               2346666655  333568899886443   3555  8889999


Q ss_pred             HHHHHhcc-------C--CCCCHHHHHHHhcCCCc
Q 019694          177 GVCKGIFR-------N--DNVADDDIVKLVDTFPG  202 (337)
Q Consensus       177 ~Il~~~~~-------~--~~l~~~~la~l~~gf~g  202 (337)
                      .|++.++.       .  ..++.+.+..++...+|
T Consensus       175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G  209 (725)
T PRK13341        175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG  209 (725)
T ss_pred             HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence            99888775       2  24566667766665544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.25  E-value=1.7e-10  Score=123.96  Aligned_cols=111  Identities=16%  Similarity=0.199  Sum_probs=71.9

Q ss_pred             CCCcE-EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 019694           19 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus        19 ~~p~g-iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      ..|.| +||+||||+|||.+|+++|+.+   ...++.++++++.+.            |+|..+.   ..+..+   +++
T Consensus       593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~~---v~~  666 (852)
T TIGR03345       593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTEA---VRR  666 (852)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHHH---HHh
Confidence            34666 7999999999999999999998   456788888776322            3432210   122222   356


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ...+||+|||||+.-.             .+...|++++|+-....  +.-......+.+||+|||..
T Consensus       667 ~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d--~~Gr~vd~~n~iiI~TSNlg  719 (852)
T TIGR03345       667 KPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMED--GEGREIDFKNTVILLTSNAG  719 (852)
T ss_pred             CCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeec--CCCcEEeccccEEEEeCCCc
Confidence            6789999999986421             34456777877432111  11112345788999999963

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.8e-11  Score=117.99  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=101.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc-ccCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l-~~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      ..|||.||.|+|||+||+.+|+-+++||...++..| ..+|+|+. +..|..++..|.-.+.+.+..||||||+|++...
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~  306 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK  306 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence            468999999999999999999999999999999998 57899986 4566777877755556778899999999999844


Q ss_pred             CCC-CcccchhhHhHHHHHHhhhCCCccccCCCccc-cCCCCCceEEEEeC-------CCCCCcchhccCCCce-EEEeC
Q 019694          100 MGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRME-KFYWA  169 (337)
Q Consensus       100 ~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-~~~~~~V~vI~TTN-------~~~~ld~aLlR~gR~d-~~i~~  169 (337)
                      ..+ +....+...-+++.|+.++.. +.|.+++... ...+...+.|=|||       -+..||.-+-|  |++ +.+-+
T Consensus       307 ~~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF  383 (564)
T KOG0745|consen  307 AESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF  383 (564)
T ss_pred             CccccccccccchhHHHHHHHHhcc-cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence            332 233567778899999999983 3444433211 11223333333333       34557776666  444 33334

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.25  E-value=4.5e-11  Score=121.73  Aligned_cols=157  Identities=15%  Similarity=0.212  Sum_probs=97.5

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCC
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNA   62 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~   62 (337)
                      ..+++++..  -+.|..+||+||||||||++|+++|+.++..                        ++.++++.      
T Consensus        26 ~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------   97 (509)
T PRK14958         26 RALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------   97 (509)
T ss_pred             HHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------
Confidence            344555543  3568899999999999999999999998653                        23333221      


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694           63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP  142 (337)
Q Consensus        63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~  142 (337)
                      ......+|++.+.+.-.-..++..|+||||+|.+...            .. +.|+..++             +....+.
T Consensus        98 ~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~------------a~-naLLk~LE-------------epp~~~~  151 (509)
T PRK14958         98 RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH------------SF-NALLKTLE-------------EPPSHVK  151 (509)
T ss_pred             cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH------------HH-HHHHHHHh-------------ccCCCeE
Confidence            1223345555554411112455679999999976421            12 23444444             3445678


Q ss_pred             EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHhcC
Q 019694          143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVDT  199 (337)
Q Consensus       143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~~g  199 (337)
                      +|++|++++.+.+.++.  |+-.+-.- ++.++....++.++...++.  .+.+..++..
T Consensus       152 fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~  209 (509)
T PRK14958        152 FILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA  209 (509)
T ss_pred             EEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            88888999999999775  54333222 67777777777777666554  4444444433

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.24  E-value=1.4e-10  Score=118.08  Aligned_cols=137  Identities=12%  Similarity=0.188  Sum_probs=89.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      -+.|..+|||||||||||++|+++|+.+...                       ++.++.+      .......+|++..
T Consensus        33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~  106 (504)
T PRK14963         33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLRE  106 (504)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHH
Confidence            3578889999999999999999999988531                       2233322      1122345566544


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...--...+.||||||+|.+..            ...+ .|+..++             .....+.+|++||.++.++
T Consensus       107 ~~~~~p~~~~~kVVIIDEad~ls~------------~a~n-aLLk~LE-------------ep~~~t~~Il~t~~~~kl~  160 (504)
T PRK14963        107 KVLLAPLRGGRKVYILDEAHMMSK------------SAFN-ALLKTLE-------------EPPEHVIFILATTEPEKMP  160 (504)
T ss_pred             HHhhccccCCCeEEEEECccccCH------------HHHH-HHHHHHH-------------hCCCCEEEEEEcCChhhCC
Confidence            442211245678999999986421            1122 2333333             2345677888889999999


Q ss_pred             chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694          155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~  189 (337)
                      +++..  |+.. +.+  |+.++..++++.++...++.
T Consensus       161 ~~I~S--Rc~~-~~f~~ls~~el~~~L~~i~~~egi~  194 (504)
T PRK14963        161 PTILS--RTQH-FRFRRLTEEEIAGKLRRLLEAEGRE  194 (504)
T ss_pred             hHHhc--ceEE-EEecCCCHHHHHHHHHHHHHHcCCC
Confidence            99876  5544 444  89999999988888766653

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.23  E-value=1.1e-10  Score=103.65  Aligned_cols=142  Identities=11%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+|||||||+|||++|+.+++.+...                        +..+...   ...  -....++++.+
T Consensus        12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~   86 (188)
T TIGR00678        12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE   86 (188)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence            678899999999999999999999987432                        1111111   001  11234555555


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..+...||+|||+|.+...            . ...|+..++             .......+|++||+++.++
T Consensus        87 ~~~~~~~~~~~kviiide~~~l~~~------------~-~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~  140 (188)
T TIGR00678        87 FLSRTPQESGRRVVIIEDAERMNEA------------A-ANALLKTLE-------------EPPPNTLFILITPSPEKLL  140 (188)
T ss_pred             HHccCcccCCeEEEEEechhhhCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence            5522212456789999999876321            1 123444444             2334567888888889999


Q ss_pred             chhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhc
Q 019694          155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVD  198 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~  198 (337)
                      +++..  |+. .+.+  |+.++..+++...    +++.+.+..+..
T Consensus       141 ~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~  179 (188)
T TIGR00678       141 PTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GISEEAAELLLA  179 (188)
T ss_pred             HHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHH
Confidence            99987  443 4555  8899998888776    466554444333

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.23  E-value=1.2e-10  Score=119.92  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=95.2

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAG   63 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~G   63 (337)
                      .+++.+..  -+.+..+||+||+|||||++|+.+|+.+..                        .++.++++      .+
T Consensus        27 ~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa------s~   98 (559)
T PRK05563         27 TLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA------SN   98 (559)
T ss_pred             HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc------cc
Confidence            34444443  356889999999999999999999998753                        22333322      12


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                      .+...+|++...+...-..+...|++|||+|.+...            .. ..|+..++             ++...+.+
T Consensus        99 ~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~------------a~-naLLKtLE-------------epp~~~if  152 (559)
T PRK05563         99 NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG------------AF-NALLKTLE-------------EPPAHVIF  152 (559)
T ss_pred             CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH------------HH-HHHHHHhc-------------CCCCCeEE
Confidence            334556777666522112456789999999976321            12 23334444             33456778


Q ss_pred             EEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC
Q 019694          144 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l  188 (337)
                      |++|+.++.|++.++.  |+.++-.- |+.++...+++.++...++
T Consensus       153 Ilatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi  196 (559)
T PRK05563        153 ILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGI  196 (559)
T ss_pred             EEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            8888889999999875  55443333 8888988888888876654

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.23  E-value=9.8e-11  Score=120.03  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=91.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcc-------ccCCCCChHHHH---HHHHHHH--
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA--   76 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l-------~~~~~Ge~~~~i---r~~f~~A--   76 (337)
                      +.|..+||+||||||||++|+++.+.+          +.+|+.++++..       .+...|.....+   ...|..+  
T Consensus        84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~  163 (531)
T TIGR02902        84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI  163 (531)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence            346789999999999999999997653          357888887632       111111100000   0011100  


Q ss_pred             ----HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc----------------C
Q 019694           77 ----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----------------E  136 (337)
Q Consensus        77 ----~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~----------------~  136 (337)
                          .+.+......+|||||||.+..             ..+..|+.++++....-..+.+..                .
T Consensus       164 ~~~~~G~l~~a~gG~L~IdEI~~L~~-------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (531)
T TIGR02902       164 PQPKPGAVTRAHGGVLFIDEIGELHP-------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL  230 (531)
T ss_pred             ccccCchhhccCCcEEEEechhhCCH-------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence                0111233568999999997642             123344444442111100011110                1


Q ss_pred             CCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHH
Q 019694          137 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIV  194 (337)
Q Consensus       137 ~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la  194 (337)
                      +..-.+|++|||+++.|++++++  |+..+... ++.+++.+|++..++..++  +.+.+.
T Consensus       231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~  289 (531)
T TIGR02902       231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE  289 (531)
T ss_pred             ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence            11223566778889999999987  67654444 7889999999988876654  444444

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.22  E-value=1.5e-10  Score=118.34  Aligned_cols=145  Identities=14%  Similarity=0.201  Sum_probs=91.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+||+||||+|||++|+.+|+.+...                        ++.+++.    ...  ....++++.+
T Consensus        36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa----s~~--gvd~ir~ii~  109 (546)
T PRK14957         36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA----SRT--GVEETKEILD  109 (546)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc----ccc--CHHHHHHHHH
Confidence            678889999999999999999999988641                        2222211    111  1234455655


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..+...|+||||+|.+...             ....|+..++             +....+.+|++|++++.+.
T Consensus       110 ~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil  163 (546)
T PRK14957        110 NIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLE-------------EPPEYVKFILATTDYHKIP  163 (546)
T ss_pred             HHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence            5532223556789999999875321             1234444544             3345677888888899999


Q ss_pred             chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHHHHh
Q 019694          155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIVKLV  197 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la~l~  197 (337)
                      ++++.  |+..+-.- ++.++....++..+...++  +...+..++
T Consensus       164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia  207 (546)
T PRK14957        164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA  207 (546)
T ss_pred             hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            88765  55433333 7888888888887766554  344344333

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.22  E-value=1.5e-10  Score=113.28  Aligned_cols=151  Identities=14%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-------ccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-------ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-------~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      +.|..+|||||||+|||++|+++|+.+..........       ++ +.........++.++..+...-..+.+.||+||
T Consensus        37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID  115 (367)
T PRK14970         37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIID  115 (367)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence            5688999999999999999999999876421110000       01 111112234566667665211113456799999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--  169 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--  169 (337)
                      |+|.+...            .. ..|+..++             .......+|++||..+.+.+++.++++   .+.+  
T Consensus       116 E~~~l~~~------------~~-~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~  166 (367)
T PRK14970        116 EVHMLSSA------------AF-NAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILSRCQ---IFDFKR  166 (367)
T ss_pred             ChhhcCHH------------HH-HHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHhcce---eEecCC
Confidence            99865321            12 23333344             223345677778888999999886444   3455  


Q ss_pred             CCHHHHHHHHHHhccCCC--CCHHHHHHHhcC
Q 019694          170 PTREDRIGVCKGIFRNDN--VADDDIVKLVDT  199 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~~--l~~~~la~l~~g  199 (337)
                      |+.++...++...+...+  ++.+.+..++..
T Consensus       167 ~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~  198 (367)
T PRK14970        167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK  198 (367)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            788888888888777665  455555555544

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.22  E-value=1.1e-10  Score=112.98  Aligned_cols=148  Identities=16%  Similarity=0.214  Sum_probs=94.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      -+.|..+|||||||+|||++|+++|+.+...                        ++.++++      .......+++++
T Consensus        33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~  106 (355)
T TIGR02397        33 GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREIL  106 (355)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHH
Confidence            3567889999999999999999999987532                        2222221      112233466677


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      ..+...-..+...||+|||+|.+...            ..+ .|+..++             .....+.+|++||+++.+
T Consensus       107 ~~~~~~p~~~~~~vviidea~~l~~~------------~~~-~Ll~~le-------------~~~~~~~lIl~~~~~~~l  160 (355)
T TIGR02397       107 DNVKYAPSSGKYKVYIIDEVHMLSKS------------AFN-ALLKTLE-------------EPPEHVVFILATTEPHKI  160 (355)
T ss_pred             HHHhcCcccCCceEEEEeChhhcCHH------------HHH-HHHHHHh-------------CCccceeEEEEeCCHHHH
Confidence            66521111345579999999876321            122 2333334             233567788888999988


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCC
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTF  200 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf  200 (337)
                      .+++..  |+.. +.+  |+.++..++++.+++..+  ++.+.+..+++..
T Consensus       161 ~~~l~s--r~~~-~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~  208 (355)
T TIGR02397       161 PATILS--RCQR-FDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA  208 (355)
T ss_pred             HHHHHh--heeE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence            888876  5544 444  889999999988887665  5555554444433

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.21  E-value=8.6e-11  Score=113.46  Aligned_cols=146  Identities=16%  Similarity=0.188  Sum_probs=89.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC--CCCChHHHHH----HHHHHHHH-HHHhcCceEEEeccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLIR----QRYREAAD-IIKKGKMCCLMINDL   93 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~--~~Ge~~~~ir----~~f~~A~~-~~~~~~p~Il~IDEi   93 (337)
                      -+.+||.||||||||++|+++|+.++.+|+.+.+......  ..|...-..+    ..|..-.. +..... +|+|+|||
T Consensus        43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEI  121 (329)
T COG0714          43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEI  121 (329)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEecc
Confidence            4569999999999999999999999999999988754322  2233211110    00000000 000111 59999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-----CCCCCcchhccCCCceEEEe
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-----~~~~ld~aLlR~gR~d~~i~  168 (337)
                      +....             .+...|+..++. ..+.+++..........+||+|+|     ....+++|+++  ||...++
T Consensus       122 nra~p-------------~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~  185 (329)
T COG0714         122 NRAPP-------------EVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY  185 (329)
T ss_pred             ccCCH-------------HHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence            86321             445566666662 123333332122346678888889     77889999997  8877778


Q ss_pred             C--C-CHHHHHHHHHHhc
Q 019694          169 A--P-TREDRIGVCKGIF  183 (337)
Q Consensus       169 ~--P-~~~~R~~Il~~~~  183 (337)
                      +  | ..++...++....
T Consensus       186 v~yp~~~~e~~~i~~~~~  203 (329)
T COG0714         186 VDYPDSEEEERIILARVG  203 (329)
T ss_pred             cCCCCchHHHHHHHHhCc
Confidence            7  7 4555555544444

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.21  E-value=4.4e-10  Score=115.89  Aligned_cols=146  Identities=10%  Similarity=0.095  Sum_probs=93.1

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------------------------cEEecCCcccc
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELES   59 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------------------------~i~vs~s~l~~   59 (337)
                      ...+++++..  -+.|..+||+||+|||||++|+++|+.+...                          ++.++++.   
T Consensus        22 ~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas---   96 (584)
T PRK14952         22 TEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS---   96 (584)
T ss_pred             HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEecccc---
Confidence            3344555543  3678899999999999999999999987642                          11222110   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC
Q 019694           60 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP  139 (337)
Q Consensus        60 ~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~  139 (337)
                         ..+...+|++-..+...-..+...|+||||+|.+...            . ...|+..+.             +...
T Consensus        97 ---~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~------------A-~NALLK~LE-------------Epp~  147 (584)
T PRK14952         97 ---HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA------------G-FNALLKIVE-------------EPPE  147 (584)
T ss_pred             ---ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH------------H-HHHHHHHHh-------------cCCC
Confidence               0123345554444411112456679999999876321            1 223444444             4456


Q ss_pred             CceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694          140 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       140 ~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l  188 (337)
                      .+.+|++|+.++.|.++++.  |+-. +.+  ++.++..+++..++...++
T Consensus       148 ~~~fIL~tte~~kll~TI~S--Rc~~-~~F~~l~~~~i~~~L~~i~~~egi  195 (584)
T PRK14952        148 HLIFIFATTEPEKVLPTIRS--RTHH-YPFRLLPPRTMRALIARICEQEGV  195 (584)
T ss_pred             CeEEEEEeCChHhhHHHHHH--hceE-EEeeCCCHHHHHHHHHHHHHHcCC
Confidence            77888888999999999875  4433 333  7788888888888776654

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=2.2e-10  Score=115.75  Aligned_cols=158  Identities=15%  Similarity=0.272  Sum_probs=101.3

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGN   61 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~   61 (337)
                      +..+++.+..  -+.|..+||+||||+|||++|+.+|+.+..                        .++.+++++     
T Consensus        22 v~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----   94 (491)
T PRK14964         22 VRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----   94 (491)
T ss_pred             HHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-----
Confidence            3344444443  366899999999999999999999997642                        234444431     


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694           62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV  141 (337)
Q Consensus        62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V  141 (337)
                       ..+...+|++.+.+...--.+...|++|||+|.+..            ... ..|+..++             ++.+.+
T Consensus        95 -~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~-NaLLK~LE-------------ePp~~v  147 (491)
T PRK14964         95 -NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAF-NALLKTLE-------------EPAPHV  147 (491)
T ss_pred             -CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHH-HHHHHHHh-------------CCCCCe
Confidence             123345666666652221245678999999986632            112 23444444             344667


Q ss_pred             eEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhcCC
Q 019694          142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTF  200 (337)
Q Consensus       142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~gf  200 (337)
                      .+|++|+.++.|++.++.  |+-. +.+  ++.++..+++..++...++  +.+.+..++...
T Consensus       148 ~fIlatte~~Kl~~tI~S--Rc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s  207 (491)
T PRK14964        148 KFILATTEVKKIPVTIIS--RCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS  207 (491)
T ss_pred             EEEEEeCChHHHHHHHHH--hhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence            888888999999999876  4444 344  7888888888888876654  444444444433

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.20  E-value=1.2e-10  Score=106.18  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=91.8

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      ...++++..  +...+..++|+||||||||+||+++++++   +.+++.+++.++..            .+.      ..
T Consensus        29 ~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~------~~   88 (227)
T PRK08903         29 VARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD------FD   88 (227)
T ss_pred             HHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh------hc
Confidence            344444443  34556789999999999999999999875   56777777764321            111      12


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcchhcc
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIR  159 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR  159 (337)
                      ....+|+|||+|.+...    .         ...|..+++        ..   ......++|.|++.+.   .+.+.|..
T Consensus        89 ~~~~~liiDdi~~l~~~----~---------~~~L~~~~~--------~~---~~~~~~~vl~~~~~~~~~~~l~~~L~s  144 (227)
T PRK08903         89 PEAELYAVDDVERLDDA----Q---------QIALFNLFN--------RV---RAHGQGALLVAGPAAPLALPLREDLRT  144 (227)
T ss_pred             ccCCEEEEeChhhcCch----H---------HHHHHHHHH--------HH---HHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence            34679999999975321    1         112223332        11   1123334555555432   23455553


Q ss_pred             CCCc--eEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694          160 DGRM--EKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       160 ~gR~--d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~  206 (337)
                        |+  ...+.+  |+.+++..++..+....  .++.+.+..+...++|.-.+
T Consensus       145 --r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~  195 (227)
T PRK08903        145 --RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS  195 (227)
T ss_pred             --HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence              44  356666  77777888887766544  55667777777766664433

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.20  E-value=1.9e-10  Score=119.14  Aligned_cols=159  Identities=13%  Similarity=0.185  Sum_probs=98.9

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCC
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAG   55 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s   55 (337)
                      ++..+++++..  -+.|..+|||||+|||||++|+++|+.+...                             ++.++++
T Consensus        24 vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa  101 (618)
T PRK14951         24 VVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA  101 (618)
T ss_pred             HHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc
Confidence            34455555553  3668899999999999999999999998652                             1122111


Q ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc
Q 019694           56 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK  135 (337)
Q Consensus        56 ~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~  135 (337)
                            .......+|++.+.+...-..++-.|++|||+|.+...            ..+ .|+..++             
T Consensus       102 ------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a~N-aLLKtLE-------------  149 (618)
T PRK14951        102 ------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------AFN-AMLKTLE-------------  149 (618)
T ss_pred             ------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------HHH-HHHHhcc-------------
Confidence                  01122345665555411111344579999999976421            122 2333333             


Q ss_pred             CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC--HHHHHHHhcCC
Q 019694          136 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTF  200 (337)
Q Consensus       136 ~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~--~~~la~l~~gf  200 (337)
                      +....+.+|++|++++.+.+.++.  |+.. +.+  ++.++..+.++.++...++.  .+.+..++...
T Consensus       150 EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~-~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s  215 (618)
T PRK14951        150 EPPEYLKFVLATTDPQKVPVTVLS--RCLQ-FNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA  215 (618)
T ss_pred             cCCCCeEEEEEECCchhhhHHHHH--hcee-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence            345667788888899999988775  5543 444  78888888888888766554  44444444433

>PRK05642 DNA replication initiation factor; Validated

Probab=99.19  E-value=1.4e-10  Score=106.94  Aligned_cols=160  Identities=13%  Similarity=0.206  Sum_probs=92.7

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK   81 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~   81 (337)
                      +.+.++++....+-.....++||||+|+|||+|++++++++   +..++.++..++...    .    ....+..    +
T Consensus        29 a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----~----~~~~~~~----~   96 (234)
T PRK05642         29 ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----G----PELLDNL----E   96 (234)
T ss_pred             HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----h----HHHHHhh----h
Confidence            34445544332222234678999999999999999998764   567777777665432    1    1111111    2


Q ss_pred             hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCCC---cchh
Q 019694           82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTL---YAPL  157 (337)
Q Consensus        82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~l---d~aL  157 (337)
                        ...+|+|||++.+.++..           ....|..+++        ..   ...++ .+|+|++ .|..+   .+.|
T Consensus        97 --~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n--------~~---~~~g~-~ilits~~~p~~l~~~~~~L  151 (234)
T PRK05642         97 --QYELVCLDDLDVIAGKAD-----------WEEALFHLFN--------RL---RDSGR-RLLLAASKSPRELPIKLPDL  151 (234)
T ss_pred             --hCCEEEEechhhhcCChH-----------HHHHHHHHHH--------HH---HhcCC-EEEEeCCCCHHHcCccCccH
Confidence              225899999997654321           0122333333        11   11223 4555555 44433   5667


Q ss_pred             ccCCCc--eEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694          158 IRDGRM--EKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ  203 (337)
Q Consensus       158 lR~gR~--d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga  203 (337)
                      ..  |+  -..+.+  |+.++|.+|++......  .++.+.+..++..+.+.
T Consensus       152 ~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d  201 (234)
T PRK05642        152 KS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS  201 (234)
T ss_pred             HH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence            65  55  345555  89999999988554433  55667777777666653

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.19  E-value=3.5e-10  Score=104.27  Aligned_cols=144  Identities=14%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ..++||||||||||+|++++++++.   ..+..++......        ...+..+..    .  +-.+|+||||+.+.+
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~----~--~~dlliiDdi~~~~~  111 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM----E--QLSLVCIDNIECIAG  111 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh----h--hCCEEEEeChhhhcC
Confidence            4799999999999999999998764   3344444432111        011111111    1  125899999997643


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---CcchhccCCCce--EEEeC--C
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--P  170 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLlR~gR~d--~~i~~--P  170 (337)
                      ...       ..+.+...+..+.               +.+++.+|+||+. |..   +.+.|..  |+.  ..+.+  |
T Consensus       112 ~~~-------~~~~lf~l~n~~~---------------e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~  167 (235)
T PRK08084        112 DEL-------WEMAIFDLYNRIL---------------ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL  167 (235)
T ss_pred             CHH-------HHHHHHHHHHHHH---------------HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence            221       1112222221111               1233445666654 444   5678875  664  55666  8


Q ss_pred             CHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCch
Q 019694          171 TREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ  203 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~ga  203 (337)
                      +.+++.++++......  .++++.+.-++..+.+.
T Consensus       168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d  202 (235)
T PRK08084        168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE  202 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence            9999999998765544  56667777777777664

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.19  E-value=3.1e-10  Score=117.15  Aligned_cols=153  Identities=8%  Similarity=0.100  Sum_probs=95.2

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN   61 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~   61 (337)
                      ...+++++...  +.+..+||+||||||||++|+.+|+.+...                        ++.+++..     
T Consensus        25 ~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----   97 (624)
T PRK14959         25 KAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----   97 (624)
T ss_pred             HHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----
Confidence            34445555432  556799999999999999999999998753                        22232210     


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCc
Q 019694           62 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV  141 (337)
Q Consensus        62 ~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V  141 (337)
                       ......++.+-+.+...-..+...||||||+|.+...            . ...|+..++             +....+
T Consensus        98 -~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~------------a-~naLLk~LE-------------EP~~~~  150 (624)
T PRK14959         98 -NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE------------A-FNALLKTLE-------------EPPARV  150 (624)
T ss_pred             -ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH------------H-HHHHHHHhh-------------ccCCCE
Confidence             1112234443333211112456689999999976311            1 233444444             334568


Q ss_pred             eEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHH
Q 019694          142 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVK  195 (337)
Q Consensus       142 ~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~  195 (337)
                      .+|++||.++.+.+.++.  |+.. +.+  ++.++...+++.++...+  ++.+.+..
T Consensus       151 ifILaTt~~~kll~TI~S--Rcq~-i~F~pLs~~eL~~~L~~il~~egi~id~eal~l  205 (624)
T PRK14959        151 TFVLATTEPHKFPVTIVS--RCQH-FTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRL  205 (624)
T ss_pred             EEEEecCChhhhhHHHHh--hhhc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            889999999999988775  5433 444  788888888888776655  45544433

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.18  E-value=1.5e-10  Score=118.50  Aligned_cols=137  Identities=13%  Similarity=0.214  Sum_probs=89.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc------------------------EEecCCccccCCCCChHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~------------------------i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      -+.+..+||+||||+|||++|+.+|+.+....                        +.++++      .......+|++.
T Consensus        35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~------~~~~vd~ir~l~  108 (527)
T PRK14969         35 QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA------SNTQVDAMRELL  108 (527)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc------ccCCHHHHHHHH
Confidence            46788999999999999999999999986531                        111111      011234466666


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      ..+...-..+...|+||||+|.+...            ..+ .|+..++             +....+.+|++|++++.+
T Consensus       109 ~~~~~~p~~~~~kVvIIDEad~ls~~------------a~n-aLLK~LE-------------epp~~~~fIL~t~d~~ki  162 (527)
T PRK14969        109 DNAQYAPTRGRFKVYIIDEVHMLSKS------------AFN-AMLKTLE-------------EPPEHVKFILATTDPQKI  162 (527)
T ss_pred             HHHhhCcccCCceEEEEcCcccCCHH------------HHH-HHHHHHh-------------CCCCCEEEEEEeCChhhC
Confidence            65521111455679999999976321            122 3334444             344667888888999999


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~  189 (337)
                      .+.++.  |+-. +.+  |+.++..+.+..++...++.
T Consensus       163 l~tI~S--Rc~~-~~f~~l~~~~i~~~L~~il~~egi~  197 (527)
T PRK14969        163 PVTVLS--RCLQ-FNLKQMPPPLIVSHLQHILEQENIP  197 (527)
T ss_pred             chhHHH--HHHH-HhcCCCCHHHHHHHHHHHHHHcCCC
Confidence            988764  5433 344  88888888888887666553

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.17  E-value=2.3e-10  Score=117.62  Aligned_cols=145  Identities=17%  Similarity=0.215  Sum_probs=93.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------------------------CcEEecCCccccCCCCChHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQR   72 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------------------------~~i~vs~s~l~~~~~Ge~~~~ir~~   72 (337)
                      +-+.|.++||+||||+|||++|+++|+.+..                        .++.++++.      ......+|.+
T Consensus        34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReI  107 (605)
T PRK05896         34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNI  107 (605)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHH
Confidence            3467899999999999999999999998753                        112222210      1122345666


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      ...+...--.+...|++|||+|.+...             ....|+..++             ++...+.+|++|+.++.
T Consensus       108 i~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~K  161 (605)
T PRK05896        108 IDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQK  161 (605)
T ss_pred             HHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHh
Confidence            555421111344579999999976311             1234545555             34456788888889999


Q ss_pred             CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694          153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL  196 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l  196 (337)
                      |.+++++  |+.. +.+  |+.++...+++..+...+  ++.+.+..+
T Consensus       162 Ll~TI~S--Rcq~-ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L  206 (605)
T PRK05896        162 IPLTIIS--RCQR-YNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI  206 (605)
T ss_pred             hhHHHHh--hhhh-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            9999886  4443 444  888888888888776654  555544443

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.17  E-value=2.5e-10  Score=118.10  Aligned_cols=146  Identities=12%  Similarity=0.195  Sum_probs=93.0

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG   63 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~G   63 (337)
                      .+++++..  -+.|..+|||||||+|||++|+++|+.+...                        ++.+++.      ..
T Consensus        27 ~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~------s~   98 (576)
T PRK14965         27 TLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA------SN   98 (576)
T ss_pred             HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc------Cc
Confidence            34444433  3678999999999999999999999998642                        1222211      11


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                      .....++++...+...-......|++|||+|.+...            . ...|+..++             ++...+.+
T Consensus        99 ~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~------------a-~naLLk~LE-------------epp~~~~f  152 (576)
T PRK14965         99 TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN------------A-FNALLKTLE-------------EPPPHVKF  152 (576)
T ss_pred             cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH------------H-HHHHHHHHH-------------cCCCCeEE
Confidence            223456666655511111345579999999876321            1 234444555             44567888


Q ss_pred             EEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694          144 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~  189 (337)
                      |++||.++.|++.++.  |+..+-+- ++.++....+..+++..++.
T Consensus       153 Il~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~  197 (576)
T PRK14965        153 IFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS  197 (576)
T ss_pred             EEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            8999999999999875  44332222 77888888887777666543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.16  E-value=4.6e-10  Score=120.89  Aligned_cols=141  Identities=15%  Similarity=0.207  Sum_probs=87.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceEEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~I   90 (337)
                      .+||+||||||||++|+++|+.+   +.+++.++++++...     .+|.+...+    ...+..+   ++....+||||
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~---v~~~p~~vLll  676 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEA---VRRRPYSVILL  676 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHH---HHhCCCCeEEE
Confidence            58999999999999999999987   456888888766332     112110000    0112222   23444589999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------------
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------------  151 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------------  151 (337)
                      ||+|++-             ..+...|++++++....  ++.-......+.+||+|||...                   
T Consensus       677 DEieka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~  741 (857)
T PRK10865        677 DEVEKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELV  741 (857)
T ss_pred             eehhhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHH
Confidence            9998642             13456677777632211  1111123345678999999731                   


Q ss_pred             ------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          152 ------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       152 ------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                            .+.|+|+.  |+|.++.+  ++.++...|++.++
T Consensus       742 ~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L  779 (857)
T PRK10865        742 LGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL  779 (857)
T ss_pred             HHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence                  24467774  89877776  77888778766555

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.16  E-value=1.3e-10  Score=115.52  Aligned_cols=138  Identities=16%  Similarity=0.117  Sum_probs=76.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCC-------cEEec----CCccccCCC--CChHHHHHHHHHHHHHHHHh--cC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMS----AGELESGNA--GEPAKLIRQRYREAADIIKK--GK   84 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~i~vs----~s~l~~~~~--Ge~~~~ir~~f~~A~~~~~~--~~   84 (337)
                      ..+.++|+||||||||++|+.+|..+...       .+.++    ..++..++.  +..-......|.++...++.  ..
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~  272 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK  272 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence            35789999999999999999999988532       12222    112222221  11111112344433333342  46


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc---cccCCCccc------cCCCCCceEEEEeCCCC----
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---CVQLPGMYN------KEENPRVPIIVTGNDFS----  151 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~---~~~~~g~~~------~~~~~~V~vI~TTN~~~----  151 (337)
                      |++|||||||..-..            .+.+.++.++++..   ...++-.+.      -....++.||+|+|..+    
T Consensus       273 ~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~  340 (459)
T PRK11331        273 KYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA  340 (459)
T ss_pred             CcEEEEehhhccCHH------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence            899999999864311            11122233333210   001110000      12357899999999988    


Q ss_pred             CCcchhccCCCceEEEeC-CCH
Q 019694          152 TLYAPLIRDGRMEKFYWA-PTR  172 (337)
Q Consensus       152 ~ld~aLlR~gR~d~~i~~-P~~  172 (337)
                      .+|.||+|  ||.. +.+ |+.
T Consensus       341 ~lD~AlrR--RF~f-i~i~p~~  359 (459)
T PRK11331        341 VVDYALRR--RFSF-IDIEPGF  359 (459)
T ss_pred             hccHHHHh--hhhe-EEecCCC
Confidence            89999999  5533 445 643

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4e-10  Score=118.13  Aligned_cols=112  Identities=17%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CCc-EEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCce
Q 019694           20 VPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMC   86 (337)
Q Consensus        20 ~p~-giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~   86 (337)
                      -|. ..||.||+|+|||.||+++|..+.   -.++.+++|++..+     .+|.+..+|    -..+.+|   +++...|
T Consensus       519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa---VRr~PyS  595 (786)
T COG0542         519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA---VRRKPYS  595 (786)
T ss_pred             CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHh---hhcCCCe
Confidence            454 556799999999999999999997   78999999998543     333322221    1223333   3556679


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND  149 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~  149 (337)
                      ||+||||++-        +.     -+...|++++|+-....  +.-......+.+||+|||-
T Consensus       596 ViLlDEIEKA--------Hp-----dV~nilLQVlDdGrLTD--~~Gr~VdFrNtiIImTSN~  643 (786)
T COG0542         596 VILLDEIEKA--------HP-----DVFNLLLQVLDDGRLTD--GQGRTVDFRNTIIIMTSNA  643 (786)
T ss_pred             EEEechhhhc--------CH-----HHHHHHHHHhcCCeeec--CCCCEEecceeEEEEeccc
Confidence            9999999862        22     45567888888432221  1112345678899999994

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.15  E-value=2.5e-10  Score=109.49  Aligned_cols=122  Identities=19%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAG   98 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~   98 (337)
                      .++||||||||||+||+.|+....-+   |+.+++..       ...+-+|++|+.+..... ..+..|||||||..+-.
T Consensus       164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk  236 (554)
T KOG2028|consen  164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK  236 (554)
T ss_pred             ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence            46789999999999999999987665   77776652       234678999999954433 56789999999975421


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCC-CCcchhccCCCceEEEeC-CCHHHH
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFS-TLYAPLIRDGRMEKFYWA-PTREDR  175 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~-~ld~aLlR~gR~d~~i~~-P~~~~R  175 (337)
                      .    .|.         +               +....+.+.|.+|++|. +|+ .|..||+.++|  .++.- .+.++-
T Consensus       237 s----QQD---------~---------------fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~--VfvLekL~~n~v  286 (554)
T KOG2028|consen  237 S----QQD---------T---------------FLPHVENGDITLIGATTENPSFQLNAALLSRCR--VFVLEKLPVNAV  286 (554)
T ss_pred             h----hhh---------c---------------ccceeccCceEEEecccCCCccchhHHHHhccc--eeEeccCCHHHH
Confidence            1    111         1               11124567788887653 343 68889997555  33222 566666


Q ss_pred             HHHHHH
Q 019694          176 IGVCKG  181 (337)
Q Consensus       176 ~~Il~~  181 (337)
                      ..|+..
T Consensus       287 ~~iL~r  292 (554)
T KOG2028|consen  287 VTILMR  292 (554)
T ss_pred             HHHHHH
Confidence            666554

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.15  E-value=2.8e-10  Score=122.32  Aligned_cols=113  Identities=18%  Similarity=0.198  Sum_probs=70.4

Q ss_pred             CCcE-EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH-----HHHHHHHHHHHHhcCc
Q 019694           20 VPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKM   85 (337)
Q Consensus        20 ~p~g-iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i-----r~~f~~A~~~~~~~~p   85 (337)
                      .|.+ +||+||||||||++|+++|+.+   +.+++.++.+++.+.     .+|.+...+     ..+...    ++....
T Consensus       537 ~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~----~~~~p~  612 (821)
T CHL00095        537 RPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEA----VRKKPY  612 (821)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHH----HHhCCC
Confidence            3544 7899999999999999999987   357888888776321     222211110     112222    244555


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      +||+|||+|+.-.             .+...|+.+++......-.|  ......+.++|+|||...
T Consensus       613 ~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g--~~v~~~~~i~I~Tsn~g~  663 (821)
T CHL00095        613 TVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKG--RTIDFKNTLIIMTSNLGS  663 (821)
T ss_pred             eEEEECChhhCCH-------------HHHHHHHHHhccCceecCCC--cEEecCceEEEEeCCcch
Confidence            8999999997521             34556777777432221111  123457889999999643

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.15  E-value=1.3e-09  Score=117.63  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCC   87 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~I   87 (337)
                      |...+||+||||||||++|+++|+.+   +.+++.++++++.+.     .+|.+...+    ...+..+   ++....+|
T Consensus       594 p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~---v~~~p~~v  670 (852)
T TIGR03346       594 PIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA---VRRKPYSV  670 (852)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH---HHcCCCcE
Confidence            34568899999999999999999987   457888888775332     222211100    0112222   24455579


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC---------------
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---------------  152 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~---------------  152 (337)
                      |||||||++-             ..+...|++++++....  ++.-......+.+||+|||....               
T Consensus       671 lllDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~  735 (852)
T TIGR03346       671 VLFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMR  735 (852)
T ss_pred             EEEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHH
Confidence            9999999652             13456677777743211  11111233567899999997321               


Q ss_pred             ----------CcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          153 ----------LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       153 ----------ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                                +.|.|+  +|+|.++.+  ++.++..+|+...+
T Consensus       736 ~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L  776 (852)
T TIGR03346       736 EAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL  776 (852)
T ss_pred             HHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence                      335566  489887777  78888888865554

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.14  E-value=7e-10  Score=116.14  Aligned_cols=142  Identities=11%  Similarity=0.196  Sum_probs=91.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe---cC----------Cccc--cCCCCChHHHHHHHHHHHHHHHHhc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA----------GELE--SGNAGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v---s~----------s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      +.+.++||+||||+|||++|+++|+.+...--..   .+          .++.  +.....+...||++.+.+...-..+
T Consensus        38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g  117 (725)
T PRK07133         38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS  117 (725)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence            6788999999999999999999999876521000   00          0000  0000122344677766652222246


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      ...|++|||+|.+...            . ...|+..++             ++...+.+|++|+.++.|++.++.  |+
T Consensus       118 ~~KV~IIDEa~~LT~~------------A-~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc  169 (725)
T PRK07133        118 KYKIYIIDEVHMLSKS------------A-FNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV  169 (725)
T ss_pred             CCEEEEEEChhhCCHH------------H-HHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence            6789999999976321            1 234444444             345667888888899999999876  55


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~~~l~  189 (337)
                      .+ +.+  |+.++..++++..+...++.
T Consensus       170 q~-ieF~~L~~eeI~~~L~~il~kegI~  196 (725)
T PRK07133        170 QR-FNFRRISEDEIVSRLEFILEKENIS  196 (725)
T ss_pred             ee-EEccCCCHHHHHHHHHHHHHHcCCC
Confidence            43 444  78899888888877666554

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.13  E-value=8.7e-10  Score=114.72  Aligned_cols=151  Identities=13%  Similarity=0.202  Sum_probs=92.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----ecCC--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----vs~s--------------~l--~~~~~Ge~~~~ir~~f~~A~~   78 (337)
                      +.+.++||+||||+|||++|+++|+.+......    ..++              ++  .+...+.....||++...+..
T Consensus        36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~  115 (620)
T PRK14948         36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF  115 (620)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence            456789999999999999999999998753110    0000              01  011122334567777766621


Q ss_pred             HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhc
Q 019694           79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI  158 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLl  158 (337)
                      .-..+...|+||||+|.+..            ... ..|+..++             +....+++|++|++++.+.+.++
T Consensus       116 ~p~~~~~KViIIDEad~Lt~------------~a~-naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr  169 (620)
T PRK14948        116 APVQARWKVYVIDECHMLST------------AAF-NALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII  169 (620)
T ss_pred             ChhcCCceEEEEECccccCH------------HHH-HHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence            11134567999999997632            112 23444444             34456788888889999999887


Q ss_pred             cCCCceEEEeC-CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694          159 RDGRMEKFYWA-PTREDRIGVCKGIFRNDN--VADDDIVKLV  197 (337)
Q Consensus       159 R~gR~d~~i~~-P~~~~R~~Il~~~~~~~~--l~~~~la~l~  197 (337)
                      .  |+..+.+- ++.++....+..++...+  ++.+.+..++
T Consensus       170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La  209 (620)
T PRK14948        170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA  209 (620)
T ss_pred             h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            5  55444333 777777777766665543  4444443333

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.13  E-value=6.3e-10  Score=112.83  Aligned_cols=153  Identities=16%  Similarity=0.240  Sum_probs=91.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------c------EEecCC---ccc--cCCCCChHHHHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------P------IMMSAG---ELE--SGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~------i~vs~s---~l~--~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      -+.+..+|||||||+|||++|+.+|+.+...       +      ..+..+   ++.  +.-.......+|.+...+...
T Consensus        35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~  114 (486)
T PRK14953         35 QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT  114 (486)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC
Confidence            3567889999999999999999999987631       0      000010   010  000111223345554444111


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                      -..+...|++|||+|.+...            .. ..|+..++             .+...+++|++|+.++.+++++.+
T Consensus       115 P~~~~~KVvIIDEad~Lt~~------------a~-naLLk~LE-------------epp~~~v~Il~tt~~~kl~~tI~S  168 (486)
T PRK14953        115 PIKGKYKVYIIDEAHMLTKE------------AF-NALLKTLE-------------EPPPRTIFILCTTEYDKIPPTILS  168 (486)
T ss_pred             cccCCeeEEEEEChhhcCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEECCHHHHHHHHHH
Confidence            12456789999999976321            11 23333444             234456777777888889998876


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCCCCCH--HHHHHHhcC
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD--DDIVKLVDT  199 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~--~~la~l~~g  199 (337)
                        |+.. +.+  |+.++...++..+++..++..  +.+..+++.
T Consensus       169 --Rc~~-i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~  209 (486)
T PRK14953        169 --RCQR-FIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA  209 (486)
T ss_pred             --hceE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence              4443 444  889999999988887766543  544444443

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.13  E-value=4.9e-10  Score=112.67  Aligned_cols=179  Identities=15%  Similarity=0.147  Sum_probs=105.3

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +...++.+...+|. ....++|||++|+|||+|++++++++     +..++.+++.++...+...-... ...+...  .
T Consensus       126 A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~-~~~~~~~--~  201 (450)
T PRK14087        126 AFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKT-HKEIEQF--K  201 (450)
T ss_pred             HHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHh-hhHHHHH--H
Confidence            33444555444443 23469999999999999999999965     45677788776654332211100 0111111  0


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYA  155 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~  155 (337)
                      -+-....+|+|||++.+.++..       ....+..++-.+.+                .+-.+|+|+|.+-    .+++
T Consensus       202 ~~~~~~dvLiIDDiq~l~~k~~-------~~e~lf~l~N~~~~----------------~~k~iIltsd~~P~~l~~l~~  258 (450)
T PRK14087        202 NEICQNDVLIIDDVQFLSYKEK-------TNEIFFTIFNNFIE----------------NDKQLFFSSDKSPELLNGFDN  258 (450)
T ss_pred             HHhccCCEEEEeccccccCCHH-------HHHHHHHHHHHHHH----------------cCCcEEEECCCCHHHHhhccH
Confidence            0124567999999997754321       11122222211111                1225788887642    3456


Q ss_pred             hhccCCCce--EEEeC--CCHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHhHHHHH
Q 019694          156 PLIRDGRME--KFYWA--PTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       156 aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      .|..  ||.  ..+.+  |+.++|.+|++..+...+    ++.+.+.-++..+.|..-...+++.
T Consensus       259 rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~  321 (450)
T PRK14087        259 RLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS  321 (450)
T ss_pred             HHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence            6665  554  44445  999999999998887644    6667777777777775555555544

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.12  E-value=9.2e-10  Score=101.34  Aligned_cols=155  Identities=15%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694            2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus         2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~   78 (337)
                      |+.-..+.+|......-.+...+||||++|||||++++++.++.   |+.++.+...++.+         +-.++...  
T Consensus        33 e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l--  101 (249)
T PF05673_consen   33 ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLL--  101 (249)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHH--
Confidence            44445566676664444578899999999999999999998865   67778877665432         23344333  


Q ss_pred             HHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           79 IIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        79 ~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                        + ...+-|||+||+.  +...  ...        -..|..+++        |. ......+|+|.+|+|+.+.++.-+
T Consensus       102 --~~~~~kFIlf~DDLs--Fe~~--d~~--------yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~  158 (249)
T PF05673_consen  102 --RDRPYKFILFCDDLS--FEEG--DTE--------YKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESF  158 (249)
T ss_pred             --hcCCCCEEEEecCCC--CCCC--cHH--------HHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhh
Confidence              3 4567899999863  2111  111        134555556        43 234567999999999988776654


Q ss_pred             cc-C--------------------CCceEEEeC--CCHHHHHHHHHHhccCCCCCH
Q 019694          158 IR-D--------------------GRMEKFYWA--PTREDRIGVCKGIFRNDNVAD  190 (337)
Q Consensus       158 lR-~--------------------gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~  190 (337)
                      .- .                    .||-..+.+  |+.++=++|++.++...+++.
T Consensus       159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~  214 (249)
T PF05673_consen  159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL  214 (249)
T ss_pred             hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            32 1                    356666666  888888888888886555443

>PRK08727 hypothetical protein; Validated

Probab=99.12  E-value=1e-09  Score=101.12  Aligned_cols=143  Identities=14%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ...++||||+|||||+|++++++++   +...+.++..++.        ..+...++.      -.+..+|+|||++.+.
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~  106 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIA  106 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCccccc
Confidence            3459999999999999999997764   4455555543321        112222222      2345699999999775


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCCC---cchhccCCCc--eEEEeC--
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YAPLIRDGRM--EKFYWA--  169 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~l---d~aLlR~gR~--d~~i~~--  169 (337)
                      +...  .         ...+.++++        ..    ...+..||+|+|. |..+   +++|.+  ||  -..+.+  
T Consensus       107 ~~~~--~---------~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~  161 (233)
T PRK08727        107 GQRE--D---------EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPV  161 (233)
T ss_pred             CChH--H---------HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecC
Confidence            4322  0         112223333        11    1124557777774 5544   678876  54  334555  


Q ss_pred             CCHHHHHHHHHHhccC--CCCCHHHHHHHhcCCCc
Q 019694          170 PTREDRIGVCKGIFRN--DNVADDDIVKLVDTFPG  202 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~--~~l~~~~la~l~~gf~g  202 (337)
                      |+.+++.+|++.+...  ..++.+.+..+++.+.|
T Consensus       162 ~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r  196 (233)
T PRK08727        162 LDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER  196 (233)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence            9999999999876643  46667777777777664

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.12  E-value=1.8e-09  Score=102.77  Aligned_cols=155  Identities=17%  Similarity=0.204  Sum_probs=92.2

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK   81 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~   81 (337)
                      +.++.++.....  | .++||||||||||++++++++++.     ..++.++.++-      .....++..+........
T Consensus        27 ~~l~~~i~~~~~--~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~------~~~~~~~~~i~~~~~~~~   97 (319)
T PRK00440         27 ERLKSYVKEKNM--P-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE------RGIDVIRNKIKEFARTAP   97 (319)
T ss_pred             HHHHHHHhCCCC--C-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc------cchHHHHHHHHHHHhcCC
Confidence            344455543322  2 479999999999999999999873     23444443321      111223333333211111


Q ss_pred             --hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           82 --KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        82 --~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                        ...+.+|+|||+|.+...             ....|..+++             .......+|+++|.+..+.+++.+
T Consensus        98 ~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s  151 (319)
T PRK00440         98 VGGAPFKIIFLDEADNLTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS  151 (319)
T ss_pred             CCCCCceEEEEeCcccCCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH
Confidence              134679999999876321             1123444444             122345678888888888888876


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcC
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDT  199 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~g  199 (337)
                        |+.. +.+  |+.++...+++.++...+  ++.+.+..++..
T Consensus       152 --r~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~  192 (319)
T PRK00440        152 --RCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV  192 (319)
T ss_pred             --Hhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence              4443 344  888998899888887665  455666655544

>PHA02244 ATPase-like protein

Probab=99.12  E-value=3.8e-10  Score=109.72  Aligned_cols=135  Identities=16%  Similarity=0.154  Sum_probs=79.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---CCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ...|||+||||||||++|+++|+.++.+++.++...-..   +++..........|-+|     .....+|+|||+|.+.
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~  193 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI  193 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence            445999999999999999999999999999887431111   11122112212233333     2356799999998643


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----------CCCcchhccCCCceEE
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF  166 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----------~~ld~aLlR~gR~d~~  166 (337)
                      .             .+...|..++++.. ....+.. .....+..+|+|+|.+           ..+++|++.  ||-. 
T Consensus       194 p-------------~vq~~L~~lLd~r~-l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~-  255 (383)
T PHA02244        194 P-------------EALIIINSAIANKF-FDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP-  255 (383)
T ss_pred             H-------------HHHHHHHHHhccCe-EEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE-
Confidence            2             11223333333211 1111110 1134678999999973           678999986  7764 


Q ss_pred             EeC--CCHHHHHHHH
Q 019694          167 YWA--PTREDRIGVC  179 (337)
Q Consensus       167 i~~--P~~~~R~~Il  179 (337)
                      +++  |+ +....|.
T Consensus       256 I~~dyp~-~~E~~i~  269 (383)
T PHA02244        256 IEFDYDE-KIEHLIS  269 (383)
T ss_pred             eeCCCCc-HHHHHHh
Confidence            455  66 3334444

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.11  E-value=2.3e-09  Score=111.64  Aligned_cols=166  Identities=15%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcccc-------CCCCChHHHHHHHHHHHHH---
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES-------GNAGEPAKLIRQRYREAAD---   78 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~-------~~~Ge~~~~ir~~f~~A~~---   78 (337)
                      ..|..++|+||||||||++|+++++..          +.+|+.+++..+..       .+.|....   ..+..+..   
T Consensus       173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~  249 (615)
T TIGR02903       173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLA  249 (615)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHH
Confidence            346679999999999999999998755          35688888876521       11221100   11111111   


Q ss_pred             ----------HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc--------------
Q 019694           79 ----------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--------------  134 (337)
Q Consensus        79 ----------~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~--------------  134 (337)
                                .+......+|||||++.+-.             .....|+.++++....-..+.|.              
T Consensus       250 ~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~  316 (615)
T TIGR02903       250 ETGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLF  316 (615)
T ss_pred             HcCCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhc
Confidence                      11123467999999986532             12234444444322111111111              


Q ss_pred             -cCCCCCceEEE-EeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCc
Q 019694          135 -KEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPG  202 (337)
Q Consensus       135 -~~~~~~V~vI~-TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~g  202 (337)
                       ......+++|+ ||++++.++++|+.  ||..+... ++.++..+|++..+...++.. +++.++...|+.
T Consensus       317 ~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~  386 (615)
T TIGR02903       317 EEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI  386 (615)
T ss_pred             ccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC
Confidence             01122344444 66778899999875  78765544 788999999988877654322 334444444443

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06620 hypothetical protein; Validated

Probab=99.10  E-value=6.6e-10  Score=101.20  Aligned_cols=149  Identities=16%  Similarity=0.138  Sum_probs=87.1

Q ss_pred             hHHHHHhhhhcCCCCCC-CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694            4 LVVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~-p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      .+.+.++.+-...+..+ -..++||||||||||+|++++++..+..++  +....           ....+         
T Consensus        26 ~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~---------   83 (214)
T PRK06620         26 QAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL---------   83 (214)
T ss_pred             HHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH---------
Confidence            34455555544334332 167999999999999999999998875322  21100           00111         


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC--CcchhccC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST--LYAPLIRD  160 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~--ld~aLlR~  160 (337)
                      ....+|+|||||.+    .    .    .    .|..+++        ..   .+.++.++|.++..|..  + ++|+. 
T Consensus        84 ~~~d~lliDdi~~~----~----~----~----~lf~l~N--------~~---~e~g~~ilits~~~p~~l~l-~~L~S-  134 (214)
T PRK06620         84 EKYNAFIIEDIENW----Q----E----P----ALLHIFN--------II---NEKQKYLLLTSSDKSRNFTL-PDLSS-  134 (214)
T ss_pred             hcCCEEEEeccccc----h----H----H----HHHHHHH--------HH---HhcCCEEEEEcCCCccccch-HHHHH-
Confidence            13368999999832    1    0    1    2222222        01   12234455555555554  4 56654 


Q ss_pred             CCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCchh
Q 019694          161 GRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQS  204 (337)
Q Consensus       161 gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gad  204 (337)
                       |+.  ..+.+  |+.+.+..+++..+...  .++.+.+.-++..+++.-
T Consensus       135 -Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~  183 (214)
T PRK06620        135 -RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREY  183 (214)
T ss_pred             -HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCH
Confidence             665  23444  99999999998887644  466677777777776543

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.10  E-value=1.2e-09  Score=109.95  Aligned_cols=145  Identities=12%  Similarity=0.158  Sum_probs=91.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCCChHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQR   72 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~Ge~~~~ir~~   72 (337)
                      -+.|..+|||||||+|||++|+++|+.+...                         ++.+++..    .  .+...++++
T Consensus        36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~----~--~gid~ir~i  109 (451)
T PRK06305         36 NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS----H--RGIEDIRQI  109 (451)
T ss_pred             CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc----c--CCHHHHHHH
Confidence            3678899999999999999999999987542                         12222110    1  112334443


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      -+...-.-......||||||+|.+...             ....|+..++             .....+.+|++||.++.
T Consensus       110 ~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lE-------------ep~~~~~~Il~t~~~~k  163 (451)
T PRK06305        110 NETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLE-------------EPPQHVKFFLATTEIHK  163 (451)
T ss_pred             HHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhh-------------cCCCCceEEEEeCChHh
Confidence            332211112457789999999876321             1234445555             33456788888899999


Q ss_pred             CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694          153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV  197 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~  197 (337)
                      |.+++..  |+.. +.+  ++.++...++...++..+  ++.+.+..++
T Consensus       164 l~~tI~s--Rc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~  209 (451)
T PRK06305        164 IPGTILS--RCQK-MHLKRIPEETIIDKLALIAKQEGIETSREALLPIA  209 (451)
T ss_pred             cchHHHH--hceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            9999876  5544 444  888888888888776655  4444444443

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=4e-10  Score=112.22  Aligned_cols=138  Identities=13%  Similarity=0.136  Sum_probs=91.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH--HHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA--KLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~--~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ...+-..+||+||||+|||.||-.+|...+.||+.+-..+-..++ .|++  ..|+..|+.|    .+...+||++|+|+
T Consensus       534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DA----YkS~lsiivvDdiE  608 (744)
T KOG0741|consen  534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDA----YKSPLSIIVVDDIE  608 (744)
T ss_pred             ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHh----hcCcceEEEEcchh
Confidence            344557899999999999999999999999999977555422221 1233  3688899999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch-hccCCCceEEEeCCCHH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTRE  173 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a-LlR~gR~d~~i~~P~~~  173 (337)
                      .+..-..  -.... +-.+.|+|+-++..        .  .....+.+|++||.+.+.|-.- ++-  -|+..+.+|+..
T Consensus       609 rLiD~vp--IGPRf-SN~vlQaL~VllK~--------~--ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~  673 (744)
T KOG0741|consen  609 RLLDYVP--IGPRF-SNLVLQALLVLLKK--------Q--PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT  673 (744)
T ss_pred             hhhcccc--cCchh-hHHHHHHHHHHhcc--------C--CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence            8762110  00111 12556777777661        1  1224577888888876633221 221  367778887654


Q ss_pred             H
Q 019694          174 D  174 (337)
Q Consensus       174 ~  174 (337)
                      .
T Consensus       674 ~  674 (744)
T KOG0741|consen  674 T  674 (744)
T ss_pred             c
Confidence            3

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.2e-09  Score=102.12  Aligned_cols=90  Identities=22%  Similarity=0.249  Sum_probs=65.0

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhcc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIR  159 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR  159 (337)
                      +..||||||||+++.+.+ .....+..+-++.-|+-+....+...   .|+......+++|++.-    .|++|=|.|. 
T Consensus       250 ~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~T---KyG~VkTdHILFIasGAFh~sKPSDLiPELQ-  324 (444)
T COG1220         250 QNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVST---KYGPVKTDHILFIASGAFHVAKPSDLIPELQ-  324 (444)
T ss_pred             hcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceeec---cccccccceEEEEecCceecCChhhcChhhc-
Confidence            468999999999997654 22235666777777777777443332   23446677888998754    6888888886 


Q ss_pred             CCCceEEEeC--CCHHHHHHHH
Q 019694          160 DGRMEKFYWA--PTREDRIGVC  179 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il  179 (337)
                       |||-..+++  .+.++-..|+
T Consensus       325 -GRfPIRVEL~~Lt~~Df~rIL  345 (444)
T COG1220         325 -GRFPIRVELDALTKEDFERIL  345 (444)
T ss_pred             -CCCceEEEcccCCHHHHHHHH
Confidence             899999998  7888877774

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.06  E-value=2.8e-09  Score=103.08  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=100.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCC--ChHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG--EPAKLIRQ   71 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~G--e~~~~ir~   71 (337)
                      -+.|.++||+||+|+|||++|+++|+.+...                        ++.+..     ...+  -....||+
T Consensus        19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~-----~~~~~~i~id~iR~   93 (328)
T PRK05707         19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP-----EEADKTIKVDQVRE   93 (328)
T ss_pred             CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-----cCCCCCCCHHHHHH
Confidence            4678999999999999999999999987542                        111111     0001  12345666


Q ss_pred             HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      +-+.+...-..+...|++||++|++...            .. ..|+..++             ++..++.+|.+|++++
T Consensus        94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~------------aa-NaLLK~LE-------------EPp~~~~fiL~t~~~~  147 (328)
T PRK05707         94 LVSFVVQTAQLGGRKVVLIEPAEAMNRN------------AA-NALLKSLE-------------EPSGDTVLLLISHQPS  147 (328)
T ss_pred             HHHHHhhccccCCCeEEEECChhhCCHH------------HH-HHHHHHHh-------------CCCCCeEEEEEECChh
Confidence            6555522223556779999999976321            22 23334444             4557789999999999


Q ss_pred             CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH---HHHHHHhcCCCchhhHh
Q 019694          152 TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       152 ~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~---~~la~l~~gf~gadl~~  207 (337)
                      .|.|.++.  |+-.+... |+.++-.+.+.....  ..+.   ..+..++.|-++..+++
T Consensus       148 ~ll~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        148 RLLPTIKS--RCQQQACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             hCcHHHHh--hceeeeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHHHHHHH
Confidence            99999875  66553333 888888888776542  2233   34556666666655544

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.06  E-value=6.1e-10  Score=101.72  Aligned_cols=168  Identities=20%  Similarity=0.254  Sum_probs=94.9

Q ss_pred             hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChH-HHHHHHHHHH
Q 019694            3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPA-KLIRQRYREA   76 (337)
Q Consensus         3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A   76 (337)
                      +.+.+.++.....++.. -..++||||+|+|||+|.+|+++++     +..++.+++.++...+..... ..+ ..|.. 
T Consensus        17 ~~a~~~~~~ia~~~~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~-~~~~~-   93 (219)
T PF00308_consen   17 ELAYAAAKAIAENPGER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI-EEFKD-   93 (219)
T ss_dssp             HHHHHHHHHHHHSTTTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH-HHHHH-
T ss_pred             HHHHHHHHHHHhcCCCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc-hhhhh-
Confidence            45566666666655542 2348999999999999999998874     456777777655432110000 000 11111 


Q ss_pred             HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC-CCCC---
Q 019694           77 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFST---  152 (337)
Q Consensus        77 ~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN-~~~~---  152 (337)
                          +-....+|+|||++.+.++.           .....|..+++        ..   .. .+..+|+|++ .|..   
T Consensus        94 ----~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n--------~~---~~-~~k~li~ts~~~P~~l~~  146 (219)
T PF00308_consen   94 ----RLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN--------RL---IE-SGKQLILTSDRPPSELSG  146 (219)
T ss_dssp             ----HHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH--------HH---HH-TTSEEEEEESS-TTTTTT
T ss_pred             ----hhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH--------HH---Hh-hCCeEEEEeCCCCccccc
Confidence                12356799999999875431           12233444444        11   11 2335666664 4454   


Q ss_pred             CcchhccCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694          153 LYAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG  202 (337)
Q Consensus       153 ld~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g  202 (337)
                      +++.|..  ||.  ..+.+  |+.+.|.+|++......  .++.+.+.-+...+++
T Consensus       147 ~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~  200 (219)
T PF00308_consen  147 LLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR  200 (219)
T ss_dssp             S-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred             cChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence            4555543  443  34555  99999999998887655  4555666666666654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.06  E-value=1.3e-09  Score=107.96  Aligned_cols=148  Identities=16%  Similarity=0.168  Sum_probs=85.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------ecCCc------------c-ccCCCC---ChHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGE------------L-ESGNAG---EPAKLIRQ   71 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------vs~s~------------l-~~~~~G---e~~~~ir~   71 (337)
                      -+.|..+|||||||+|||++|+++|+.+...-..          -.++.            + ...+.|   .....|++
T Consensus        35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~  114 (397)
T PRK14955         35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRL  114 (397)
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH
Confidence            3678999999999999999999999998763100          00000            0 000111   11234444


Q ss_pred             HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      +-+.+...-..+...|+||||+|.+...            .. ..|+..++             ...+...+|++|++++
T Consensus       115 l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~~-~~LLk~LE-------------ep~~~t~~Il~t~~~~  168 (397)
T PRK14955        115 LRENVRYGPQKGRYRVYIIDEVHMLSIA------------AF-NAFLKTLE-------------EPPPHAIFIFATTELH  168 (397)
T ss_pred             HHHHHhhchhcCCeEEEEEeChhhCCHH------------HH-HHHHHHHh-------------cCCCCeEEEEEeCChH
Confidence            4333311111345579999999876321            11 22333334             3344566777777888


Q ss_pred             CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHH
Q 019694          152 TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIV  194 (337)
Q Consensus       152 ~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la  194 (337)
                      .+.+++..  |+. .+.+  ++.++..+++...++..+  ++.+.+.
T Consensus       169 kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~  212 (397)
T PRK14955        169 KIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQ  212 (397)
T ss_pred             HhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            89888876  333 2444  678888888877776554  4444333

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.05  E-value=3e-09  Score=110.16  Aligned_cols=151  Identities=11%  Similarity=0.114  Sum_probs=93.7

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec-C--------------------CccccCC--CC
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-A--------------------GELESGN--AG   63 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs-~--------------------s~l~~~~--~G   63 (337)
                      ..+++++..  -+.|..+||+||+|+|||++|+++|+.+.+.....+ +                    .++..-.  ..
T Consensus        34 ~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~  111 (598)
T PRK09111         34 RTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASH  111 (598)
T ss_pred             HHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccccc
Confidence            334444443  367889999999999999999999999875422111 0                    0010000  00


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                      .+...||++...+...--.....|+||||+|.+..            ... ..|+..+.             +....+.+
T Consensus       112 ~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~-naLLKtLE-------------ePp~~~~f  165 (598)
T PRK09111        112 TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAF-NALLKTLE-------------EPPPHVKF  165 (598)
T ss_pred             CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHH-HHHHHHHH-------------hCCCCeEE
Confidence            12335666666552211244568999999987631            112 23333344             34456778


Q ss_pred             EEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694          144 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l  188 (337)
                      |++|+.++.+.+.++.  |+.. +.+  |+.++...+++..+...++
T Consensus       166 Il~tte~~kll~tI~S--Rcq~-~~f~~l~~~el~~~L~~i~~kegi  209 (598)
T PRK09111        166 IFATTEIRKVPVTVLS--RCQR-FDLRRIEADVLAAHLSRIAAKEGV  209 (598)
T ss_pred             EEEeCChhhhhHHHHh--heeE-EEecCCCHHHHHHHHHHHHHHcCC
Confidence            8888888889888765  5544 444  8899988888888776654

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.05  E-value=2.5e-09  Score=110.20  Aligned_cols=137  Identities=16%  Similarity=0.203  Sum_probs=87.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+|||||||+|||++|+++|+.+...                        ++.+++.      .......++++.+
T Consensus        36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idga------s~~~vddIr~l~e  109 (563)
T PRK06647         36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGA------SNTSVQDVRQIKE  109 (563)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCc------ccCCHHHHHHHHH
Confidence            578899999999999999999999998642                        1111111      0012234555544


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+...-..+...|++|||+|.+..            ...+ .|+..++             .+...+.+|++|+.++.|.
T Consensus       110 ~~~~~p~~~~~KVvIIDEa~~Ls~------------~a~n-aLLK~LE-------------epp~~~vfI~~tte~~kL~  163 (563)
T PRK06647        110 EIMFPPASSRYRVYIIDEVHMLSN------------SAFN-ALLKTIE-------------EPPPYIVFIFATTEVHKLP  163 (563)
T ss_pred             HHHhchhcCCCEEEEEEChhhcCH------------HHHH-HHHHhhc-------------cCCCCEEEEEecCChHHhH
Confidence            441111245677999999987631            1222 3333444             3456678888888899999


Q ss_pred             chhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC
Q 019694          155 APLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~  189 (337)
                      ++++.  |+..+-.- |+.++..++++..+...++.
T Consensus       164 ~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~  197 (563)
T PRK06647        164 ATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIK  197 (563)
T ss_pred             HHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            99876  55443333 88888888888777655543

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.02  E-value=1.8e-09  Score=102.76  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC------------------------CCcEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~------------------------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+||+||||+|||++|.++|+++.                        -.++.++.++.....+  ....|+++-+
T Consensus        22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~   99 (325)
T COG0470          22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDI--IVEQVRELAE   99 (325)
T ss_pred             CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcc--hHHHHHHHHH
Confidence            5677999999999999999999999987                        4567777765443221  1122333222


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .....-..+..-||+|||+|.+....            .+ .|+..+.             ++..+.++|++||+++.|-
T Consensus       100 ~~~~~~~~~~~kviiidead~mt~~A------------~n-allk~lE-------------ep~~~~~~il~~n~~~~il  153 (325)
T COG0470         100 FLSESPLEGGYKVVIIDEADKLTEDA------------AN-ALLKTLE-------------EPPKNTRFILITNDPSKIL  153 (325)
T ss_pred             HhccCCCCCCceEEEeCcHHHHhHHH------------HH-HHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence            22000012567899999999874321            12 2222222             5567889999999999999


Q ss_pred             chhccCCCceEEEeCC
Q 019694          155 APLIRDGRMEKFYWAP  170 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~P  170 (337)
                      +++..  |+-.+...|
T Consensus       154 ~tI~S--Rc~~i~f~~  167 (325)
T COG0470         154 PTIRS--RCQRIRFKP  167 (325)
T ss_pred             chhhh--cceeeecCC
Confidence            98876  554433334

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.01  E-value=5.5e-09  Score=108.51  Aligned_cols=158  Identities=15%  Similarity=0.150  Sum_probs=92.3

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------ecCC------------cc-ccCCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAG------------EL-ESGNA   62 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------vs~s------------~l-~~~~~   62 (337)
                      ++.+++.+.  +-+.|.++||+||||||||++|+.+|+.+...--.          -.++            .+ ...+.
T Consensus        25 ~~~L~~~i~--~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d  102 (620)
T PRK14954         25 THTIQNSLR--MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFD  102 (620)
T ss_pred             HHHHHHHHH--cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEec
Confidence            334444443  33778999999999999999999999998763100          0000            00 00011


Q ss_pred             CC---hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCC
Q 019694           63 GE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP  139 (337)
Q Consensus        63 Ge---~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~  139 (337)
                      |.   +...|+++-+.....-..+...|++|||+|.+...            . ...|+..++             +...
T Consensus       103 ~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------------a-~naLLK~LE-------------ePp~  156 (620)
T PRK14954        103 AASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------------A-FNAFLKTLE-------------EPPP  156 (620)
T ss_pred             ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH------------H-HHHHHHHHh-------------CCCC
Confidence            11   12344544333311011345679999999876321            1 223444445             3344


Q ss_pred             CceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHH
Q 019694          140 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIV  194 (337)
Q Consensus       140 ~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la  194 (337)
                      .+.+|++|++++.|.+++..++.   .+.+  ++.++....+..++...+  ++.+.+.
T Consensus       157 ~tv~IL~t~~~~kLl~TI~SRc~---~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~  212 (620)
T PRK14954        157 HAIFIFATTELHKIPATIASRCQ---RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ  212 (620)
T ss_pred             CeEEEEEeCChhhhhHHHHhhce---EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            56677777888999999876433   3444  778888888887776554  5554333

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.99  E-value=6.2e-09  Score=106.25  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=90.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      -+.|..+|||||||+|||++|+++|+.+...                        ++.++++.      ......||+..
T Consensus        33 grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas------~~gId~IReli  106 (535)
T PRK08451         33 NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELI  106 (535)
T ss_pred             CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHH
Confidence            3678899999999999999999999987421                        22222110      01123455555


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      ..+...-..+...|++|||+|.+...            .. ..|+..+.             ++...+.+|++|+++..|
T Consensus       107 e~~~~~P~~~~~KVvIIDEad~Lt~~------------A~-NALLK~LE-------------Epp~~t~FIL~ttd~~kL  160 (535)
T PRK08451        107 EQTKYKPSMARFKIFIIDEVHMLTKE------------AF-NALLKTLE-------------EPPSYVKFILATTDPLKL  160 (535)
T ss_pred             HHHhhCcccCCeEEEEEECcccCCHH------------HH-HHHHHHHh-------------hcCCceEEEEEECChhhC
Confidence            44310001234569999999876321            12 23444444             334557788888999999


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhc
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVD  198 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~  198 (337)
                      +++++.  |+.. +.+  ++.++..+.+..++...++  +.+.+..++.
T Consensus       161 ~~tI~S--Rc~~-~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~  206 (535)
T PRK08451        161 PATILS--RTQH-FRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR  206 (535)
T ss_pred             chHHHh--hcee-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            999876  5443 444  7888888888888776655  4444444443

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.98  E-value=7e-09  Score=107.62  Aligned_cols=150  Identities=11%  Similarity=0.135  Sum_probs=87.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe---cC--------------Cccc--cCCCCChHHHHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA--------------GELE--SGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v---s~--------------s~l~--~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +.+..+|||||||+|||++|+++|+.+....-.-   .+              .++.  +.........++++.+.+...
T Consensus        36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~  115 (585)
T PRK14950         36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR  115 (585)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC
Confidence            5678899999999999999999999986421100   00              0000  000011223344444333111


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                      -......||||||+|.+..            ...+ .|+..++             .....+++|++|+..+.+.+.+..
T Consensus       116 p~~~~~kVvIIDEa~~L~~------------~a~n-aLLk~LE-------------epp~~tv~Il~t~~~~kll~tI~S  169 (585)
T PRK14950        116 PALARYKVYIIDEVHMLST------------AAFN-ALLKTLE-------------EPPPHAIFILATTEVHKVPATILS  169 (585)
T ss_pred             cccCCeEEEEEeChHhCCH------------HHHH-HHHHHHh-------------cCCCCeEEEEEeCChhhhhHHHHh
Confidence            1134567999999987632            1122 3344444             223456778888888888888765


Q ss_pred             CCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694          160 DGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV  197 (337)
Q Consensus       160 ~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~  197 (337)
                        |+.+ +.+  ++..+...++...+...+  ++.+.+..++
T Consensus       170 --R~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La  208 (585)
T PRK14950        170 --RCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA  208 (585)
T ss_pred             --ccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence              4444 344  788888888877776554  4444444433

>PRK08116 hypothetical protein; Validated

Probab=98.96  E-value=1.7e-09  Score=101.84  Aligned_cols=100  Identities=24%  Similarity=0.381  Sum_probs=62.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH-----HHHHHH-hcCceEEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMI   90 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-----A~~~~~-~~~p~Il~I   90 (337)
                      .+.|++|||+||||||+||.++|+++   +.+++.++.+++.+.+        ...|..     ..+.+. -....+|+|
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLvi  184 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLIL  184 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEE
Confidence            45789999999999999999999986   7788888877654321        111110     001112 234569999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ||+....        .   +......|.++++        .    ....+.++|+|||..
T Consensus       185 DDlg~e~--------~---t~~~~~~l~~iin--------~----r~~~~~~~IiTsN~~  221 (268)
T PRK08116        185 DDLGAER--------D---TEWAREKVYNIID--------S----RYRKGLPTIVTTNLS  221 (268)
T ss_pred             ecccCCC--------C---CHHHHHHHHHHHH--------H----HHHCCCCEEEECCCC
Confidence            9985311        0   1122344556666        1    123456899999975

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.3e-08  Score=98.03  Aligned_cols=137  Identities=20%  Similarity=0.282  Sum_probs=90.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCC-----cEEecCCccccC---------------CCCChHHHHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESG---------------NAGEPAKLIRQRYREAADI   79 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----~i~vs~s~l~~~---------------~~Ge~~~~ir~~f~~A~~~   79 (337)
                      .|..+++|||||||||..++.+++++.-.     ++.+++-.+.+.               ..|-+.   .+.|+.-.+.
T Consensus        41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~---~~~~~~l~~~  117 (366)
T COG1474          41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSS---LEILKRLYDN  117 (366)
T ss_pred             CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCch---HHHHHHHHHH
Confidence            34459999999999999999999988544     788888765332               122221   2333333333


Q ss_pred             HH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcc
Q 019694           80 IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYA  155 (337)
Q Consensus        80 ~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~  155 (337)
                      +. .....||++||+|.+..+.+             ..|.+++..+          .....+|.+|+.+|+.+   .+|+
T Consensus       118 ~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~----------~~~~~~v~vi~i~n~~~~~~~ld~  174 (366)
T COG1474         118 LSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRAP----------GENKVKVSIIAVSNDDKFLDYLDP  174 (366)
T ss_pred             HHhcCCeEEEEEcchhhhccccc-------------hHHHHHHhhc----------cccceeEEEEEEeccHHHHHHhhh
Confidence            34 56788999999999886543             2334443311          12267889999999874   6777


Q ss_pred             hhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          156 PLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       156 aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                      -+...-.... +.+  .+.+|..+|++.-.
T Consensus       175 rv~s~l~~~~-I~F~pY~a~el~~Il~~R~  203 (366)
T COG1474         175 RVKSSLGPSE-IVFPPYTAEELYDILRERV  203 (366)
T ss_pred             hhhhccCcce-eeeCCCCHHHHHHHHHHHH
Confidence            7664433334 344  78899999976554

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=98.93  E-value=1.5e-09  Score=105.09  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccCC
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG  161 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~g  161 (337)
                      ...+||+|||+.+..             .+.+.|++.++..+ .++.+|.. .....++++|+|+|-.+ .++++|+.  
T Consensus       128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld--  191 (334)
T PRK13407        128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD--  191 (334)
T ss_pred             CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--
Confidence            346999999986532             33455556665322 12333431 12345788889988644 58889986  


Q ss_pred             CceEEEeC--CCH-HHHHHHHHHhc
Q 019694          162 RMEKFYWA--PTR-EDRIGVCKGIF  183 (337)
Q Consensus       162 R~d~~i~~--P~~-~~R~~Il~~~~  183 (337)
                      ||...+.+  |.. ++|.+|+....
T Consensus       192 RF~~~v~v~~~~~~~e~~~il~~~~  216 (334)
T PRK13407        192 RFGLSVEVRSPRDVETRVEVIRRRD  216 (334)
T ss_pred             hcceEEEcCCCCcHHHHHHHHHHhh
Confidence            89888888  444 88999987754

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.92  E-value=3.1e-08  Score=97.15  Aligned_cols=160  Identities=15%  Similarity=0.175  Sum_probs=96.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE-------------EecC-------------Ccc--ccC---CCCC--
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------------MMSA-------------GEL--ESG---NAGE--   64 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i-------------~vs~-------------s~l--~~~---~~Ge--   64 (337)
                      -+.|.++||+||+|+||+++|.++|+.+-..--             .+++             .++  ...   ..|.  
T Consensus        38 ~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~  117 (365)
T PRK07471         38 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRL  117 (365)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccc
Confidence            478999999999999999999999998732110             0000             000  000   0010  


Q ss_pred             ----hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCC
Q 019694           65 ----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR  140 (337)
Q Consensus        65 ----~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~  140 (337)
                          ....||++-+.+......+.+.|++|||+|.+-.            .. ...|+..+.             +...+
T Consensus       118 ~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------------~a-anaLLK~LE-------------epp~~  171 (365)
T PRK07471        118 RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------------NA-ANALLKVLE-------------EPPAR  171 (365)
T ss_pred             cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------------HH-HHHHHHHHh-------------cCCCC
Confidence                1123444444332222356789999999997521            11 223444444             34466


Q ss_pred             ceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH---HHHHHHhcCCCchhhHh
Q 019694          141 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       141 V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~---~~la~l~~gf~gadl~~  207 (337)
                      +.+|++|++++.+.+.++.  |+..+..- |+.++-.+++......  .+.   ..+..++.|-++..+.+
T Consensus       172 ~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~~~s~Gsp~~Al~l  238 (365)
T PRK07471        172 SLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALAALAEGSVGRALRL  238 (365)
T ss_pred             eEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHcCCCHHHHHHH
Confidence            7888999999999887754  66554443 8899998888776532  222   35666677766655544

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.91  E-value=3.2e-08  Score=96.51  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=93.7

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------cEEe-cC--------------Ccc--c-cCC-C--C-----
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMM-SA--------------GEL--E-SGN-A--G-----   63 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------~i~v-s~--------------s~l--~-~~~-~--G-----   63 (337)
                      .-+.|..+||+||+|+|||++|+.+|+.+...       .... .+              .++  . ... .  |     
T Consensus        41 ~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~  120 (351)
T PRK09112         41 EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA  120 (351)
T ss_pred             cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence            34778899999999999999999999987541       1000 00              001  0 000 0  0     


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                      -+...||.+-+........+...|++|||+|.+-..            ..+ .|+..++             ++..++.+
T Consensus       121 I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------aan-aLLk~LE-------------Epp~~~~f  174 (351)
T PRK09112        121 ITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------AAN-AILKTLE-------------EPPARALF  174 (351)
T ss_pred             CCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------HHH-HHHHHHh-------------cCCCCceE
Confidence            011234433332211112556789999999976321            112 2444444             34456777


Q ss_pred             EEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhH
Q 019694          144 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSID  206 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~  206 (337)
                      |+.|+.++.+.+.++.  |+- .+.+  |+.++-.+++.......+++.+   .+..++.|-+...+.
T Consensus       175 iLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~  239 (351)
T PRK09112        175 ILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALL  239 (351)
T ss_pred             EEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHH
Confidence            8888889999888754  663 4555  8999999998875433334443   344445554444443

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.89  E-value=1.2e-08  Score=99.22  Aligned_cols=84  Identities=15%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccCC
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG  161 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~g  161 (337)
                      ...+||+|||+.+..             .+++.|++.++..+ .+.-.|.. .....++++|+|.|-.+ .++++|+.  
T Consensus       144 ~~GiL~lDEInrL~~-------------~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld--  207 (350)
T CHL00081        144 NRGILYVDEVNLLDD-------------HLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD--  207 (350)
T ss_pred             CCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH--
Confidence            457999999986532             23344556655211 11112321 12345778888888555 68999987  


Q ss_pred             CceEEEeC--CC-HHHHHHHHHHhc
Q 019694          162 RMEKFYWA--PT-REDRIGVCKGIF  183 (337)
Q Consensus       162 R~d~~i~~--P~-~~~R~~Il~~~~  183 (337)
                      ||...+.+  |+ .+.+.+|++...
T Consensus       208 Rf~l~i~l~~~~~~~~e~~il~~~~  232 (350)
T CHL00081        208 RFGMHAEIRTVKDPELRVKIVEQRT  232 (350)
T ss_pred             HhCceeecCCCCChHHHHHHHHhhh
Confidence            88888888  76 699999998754

>PRK09087 hypothetical protein; Validated

Probab=98.89  E-value=1.4e-08  Score=93.23  Aligned_cols=133  Identities=18%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG  101 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~  101 (337)
                      .-++||||+|+|||+|++++++..+..++  +...+.           .+.+...       ...+|+|||+|.+..   
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~---  101 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF---  101 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence            34899999999999999999988765433  322111           1112111       124899999996521   


Q ss_pred             CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---CcchhccCCCce--EEEeC--CCHH
Q 019694          102 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTRE  173 (337)
Q Consensus       102 ~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLlR~gR~d--~~i~~--P~~~  173 (337)
                        ++         ..|..+++        .    ....+..+|+|++. +..   ..+.|+.  |+.  ..+.+  |+.+
T Consensus       102 --~~---------~~lf~l~n--------~----~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e  156 (226)
T PRK09087        102 --DE---------TGLFHLIN--------S----VRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA  156 (226)
T ss_pred             --CH---------HHHHHHHH--------H----HHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence              11         11222322        0    11123356666653 332   3566654  554  55666  9999


Q ss_pred             HHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694          174 DRIGVCKGIFRND--NVADDDIVKLVDTFPG  202 (337)
Q Consensus       174 ~R~~Il~~~~~~~--~l~~~~la~l~~gf~g  202 (337)
                      +|.+|++..+...  .++.+.+.-++..+++
T Consensus       157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r  187 (226)
T PRK09087        157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMER  187 (226)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence            9999999998765  4555666666666664

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.89  E-value=2.5e-08  Score=95.69  Aligned_cols=146  Identities=14%  Similarity=0.149  Sum_probs=89.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--------cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      .-+.|..+||+||+|+|||++|+++|+.+-..        ++.+...  .++..  ....||++-+.+...-..+...|+
T Consensus        22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~   97 (313)
T PRK05564         22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVI   97 (313)
T ss_pred             cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCC--CHHHHHHHHHHHhcCcccCCceEE
Confidence            34678899999999999999999999986432        1222211  01111  122355554443111124566799


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~  168 (337)
                      +||++|.+...            . ...|+..++             ++..++.+|.+|++++.+.+.++.  |+. .+.
T Consensus        98 iI~~ad~m~~~------------a-~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~-~~~  148 (313)
T PRK05564         98 IIYNSEKMTEQ------------A-QNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQ-IYK  148 (313)
T ss_pred             EEechhhcCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hce-eee
Confidence            99999875211            1 223444444             445677888888899999999876  443 444


Q ss_pred             C--CCHHHHHHHHHHhccCCCCCHHHHHHHh
Q 019694          169 A--PTREDRIGVCKGIFRNDNVADDDIVKLV  197 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~~~l~~~~la~l~  197 (337)
                      +  |+.++...++...+.  +++.+.+..++
T Consensus       149 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~  177 (313)
T PRK05564        149 LNRLSKEEIEKFISYKYN--DIKEEEKKSAI  177 (313)
T ss_pred             CCCcCHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence            4  788888877766553  45555444433

>smart00350 MCM minichromosome maintenance proteins

Probab=98.86  E-value=3.7e-09  Score=107.96  Aligned_cols=137  Identities=16%  Similarity=0.187  Sum_probs=83.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe----cCCcc-----ccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGEL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v----s~s~l-----~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .|||+|+||||||++|+++++......+..    ++..+     .+...|+.      .++ + +.+......+++|||+
T Consensus       238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~------~~~-~-G~l~~A~~Gil~iDEi  309 (509)
T smart00350      238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF------TLE-G-GALVLADNGVCCIDEF  309 (509)
T ss_pred             eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE------Eec-C-ccEEecCCCEEEEech
Confidence            699999999999999999999775433221    11111     11111110      000 0 0111235679999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC-------------CCcchhcc
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR  159 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR  159 (337)
                      |.+..             .....|++.++..+. +.-.|. ......+..||+|+|-..             .|+++++.
T Consensus       310 ~~l~~-------------~~q~~L~e~me~~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs  375 (509)
T smart00350      310 DKMDD-------------SDRTAIHEAMEQQTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS  375 (509)
T ss_pred             hhCCH-------------HHHHHHHHHHhcCEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence            97632             223445555542211 111222 112346788999999643             59999997


Q ss_pred             CCCceEEEeC---CCHHHHHHHHHHhc
Q 019694          160 DGRMEKFYWA---PTREDRIGVCKGIF  183 (337)
Q Consensus       160 ~gR~d~~i~~---P~~~~R~~Il~~~~  183 (337)
                        |||.++.+   |+.+...+|++.++
T Consensus       376 --RFdLi~~~~d~~~~~~d~~i~~~i~  400 (509)
T smart00350      376 --RFDLLFVVLDEVDEERDRELAKHVV  400 (509)
T ss_pred             --ceeeEEEecCCCChHHHHHHHHHHH
Confidence              99998887   99999999987755

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=98.85  E-value=4.1e-09  Score=109.35  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=90.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH-----HHHHHhcCceEEEecccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----~~~~~~~~p~Il~IDEiD   94 (337)
                      .+|||.|+||||||++|+++++.+..  +|+.+..+...+..+|.-  .+...+...     ..++......+||||||+
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~   94 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN   94 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence            47999999999999999999998764  577777543344444432  011111110     001112344699999998


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC---CCcchhccCCCceEEEeC-
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR~gR~d~~i~~-  169 (337)
                      .+..             .+...|++.++..+. +.-.|.. .....++.||+|+|..+   .++++|+.  ||...+.+ 
T Consensus        95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~  158 (589)
T TIGR02031        95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE  158 (589)
T ss_pred             hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence            7532             334556666653221 1111221 12234678899999765   78999986  88887776 


Q ss_pred             --CCHHHHHHHHHHhc
Q 019694          170 --PTREDRIGVCKGIF  183 (337)
Q Consensus       170 --P~~~~R~~Il~~~~  183 (337)
                        |+.++|.+|++..+
T Consensus       159 ~~~~~~er~eil~~~~  174 (589)
T TIGR02031       159 DVASQDLRVEIVRRER  174 (589)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence              88888999987765

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK12377 putative replication protein; Provisional

Probab=98.84  E-value=4.4e-09  Score=97.81  Aligned_cols=99  Identities=14%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH---HHHHH-hcCceEEEeccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLMINDL   93 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A---~~~~~-~~~p~Il~IDEi   93 (337)
                      ..+++|+||||||||+||.++|+++   |..++.++..++...        ++..|...   .+.++ -....+|+|||+
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~--------l~~~~~~~~~~~~~l~~l~~~dLLiIDDl  172 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR--------LHESYDNGQSGEKFLQELCKVDLLVLDEI  172 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH--------HHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence            4689999999999999999999987   566777777655432        12222110   01112 356789999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ......           ......|.++++        .    ....+.++|+|||..
T Consensus       173 g~~~~s-----------~~~~~~l~~ii~--------~----R~~~~~ptiitSNl~  206 (248)
T PRK12377        173 GIQRET-----------KNEQVVLNQIID--------R----RTASMRSVGMLTNLN  206 (248)
T ss_pred             CCCCCC-----------HHHHHHHHHHHH--------H----HHhcCCCEEEEcCCC
Confidence            653211           112345556665        1    223457899999964

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=98.83  E-value=8.6e-09  Score=90.45  Aligned_cols=122  Identities=17%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK   84 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~   84 (337)
                      ..|.-|||+|++||||+++|++|.+..   +.+|+.++++.+-..      ..-.++|...           ..++....
T Consensus        20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~------~~e~~LFG~~~~~~~~~~~~~~G~l~~A~   93 (168)
T PF00158_consen   20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEE------LLESELFGHEKGAFTGARSDKKGLLEQAN   93 (168)
T ss_dssp             TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HH------HHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcc------hhhhhhhccccccccccccccCCceeecc
Confidence            345679999999999999999998865   468999999876221      1112333321           02333447


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME  164 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d  164 (337)
                      ...|||||||.+..             .++.-|+++++..+...+++.  .....++-||+|||..  +.. ++..|+|.
T Consensus        94 ~GtL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~~-~v~~g~fr  155 (168)
T PF00158_consen   94 GGTLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LEE-LVEQGRFR  155 (168)
T ss_dssp             TSEEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred             ceEEeecchhhhHH-------------HHHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HHH-HHHcCCCh
Confidence            78999999998743             234555566663332222221  1234578999999952  222 33445553

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.83  E-value=7.7e-08  Score=93.44  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=96.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCc-------------------------EEecCCccccC-------------
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG-------------   60 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~-------------------------i~vs~s~l~~~-------------   60 (337)
                      +.|.++||+||+|+||+++|+++|+.+....                         ..+.......+             
T Consensus        19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~   98 (342)
T PRK06964         19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA   98 (342)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence            8999999999999999999999999875422                         11111000000             


Q ss_pred             -CCC---------ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCC
Q 019694           61 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP  130 (337)
Q Consensus        61 -~~G---------e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~  130 (337)
                       -.|         -....||++.+........+.-.|++||++|.+-..            ..+ .|+..++        
T Consensus        99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~------------AaN-aLLKtLE--------  157 (342)
T PRK06964         99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA------------AAN-ALLKTLE--------  157 (342)
T ss_pred             hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH------------HHH-HHHHHhc--------
Confidence             001         011244544444311112445679999999876321            222 3334444        


Q ss_pred             CccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-HHHHHHhcCCCchhhHh
Q 019694          131 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       131 g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-~~la~l~~gf~gadl~~  207 (337)
                           ++.+++++|.+|++++.|.|.++.  |+-. +.+  |+.++..+.+...    +++. ..+..++.|-++..+++
T Consensus       158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~-i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~~  225 (342)
T PRK06964        158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQ-FPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALAL  225 (342)
T ss_pred             -----CCCcCcEEEEEECChhhCcHHHHh--cCEE-EEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHHH
Confidence                 667889999999999999999886  5543 444  8888888888654    2332 34556666666655554

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.83  E-value=7.4e-09  Score=86.51  Aligned_cols=116  Identities=15%  Similarity=0.153  Sum_probs=55.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-cccc-CCCCChHHHHHHHHHHHHHHHH----hcCceEEEecccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELES-GNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDAG   96 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-~l~~-~~~Ge~~~~ir~~f~~A~~~~~----~~~p~Il~IDEiD~l   96 (337)
                      .|||+|+||+|||++|+++|+.++..|..|... ++.- ...|.+      +|........    ---..|+++|||...
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra   74 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA   74 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence            389999999999999999999999999988664 2211 000100      0000000000    001259999999753


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR  159 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR  159 (337)
                      ..             .+++.|++.+. ...|.++|.. -......+||+|-|..+     .|+.|++-
T Consensus        75 pp-------------ktQsAlLeam~-Er~Vt~~g~~-~~lp~pf~ViATqNp~e~~Gty~Lpea~~D  127 (131)
T PF07726_consen   75 PP-------------KTQSALLEAME-ERQVTIDGQT-YPLPDPFFVIATQNPVEQEGTYPLPEAQLD  127 (131)
T ss_dssp             -H-------------HHHHHHHHHHH-HSEEEETTEE-EE--SS-EEEEEE-TT--S------HHHHT
T ss_pred             CH-------------HHHHHHHHHHH-cCeEEeCCEE-EECCCcEEEEEecCccccCceecCCHHHhc
Confidence            22             23455555554 1233333331 01234578888999776     67777764

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=4.3e-08  Score=102.15  Aligned_cols=137  Identities=11%  Similarity=0.125  Sum_probs=87.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCCChHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQR   72 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~Ge~~~~ir~~   72 (337)
                      -+.|..+|||||+|+|||++|+.+|+.+.+.                         ++.++++      ...+...|+.+
T Consensus        36 ~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~------~~~~vd~Ir~l  109 (614)
T PRK14971         36 NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA------SNNSVDDIRNL  109 (614)
T ss_pred             CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc------ccCCHHHHHHH
Confidence            4678999999999999999999999987632                         1222211      01122345555


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      ...+...--.+...|++|||+|.+..            .. ...|+..++             .......+|++|+..+.
T Consensus       110 i~~~~~~P~~~~~KVvIIdea~~Ls~------------~a-~naLLK~LE-------------epp~~tifIL~tt~~~k  163 (614)
T PRK14971        110 IEQVRIPPQIGKYKIYIIDEVHMLSQ------------AA-FNAFLKTLE-------------EPPSYAIFILATTEKHK  163 (614)
T ss_pred             HHHHhhCcccCCcEEEEEECcccCCH------------HH-HHHHHHHHh-------------CCCCCeEEEEEeCCchh
Confidence            55541111133456999999987632            11 224444555             33345667777777889


Q ss_pred             CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCC
Q 019694          153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA  189 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~  189 (337)
                      |.++++.  |+.. +.+  ++.++...++..++...++.
T Consensus       164 Il~tI~S--Rc~i-v~f~~ls~~ei~~~L~~ia~~egi~  199 (614)
T PRK14971        164 ILPTILS--RCQI-FDFNRIQVADIVNHLQYVASKEGIT  199 (614)
T ss_pred             chHHHHh--hhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence            9999876  4433 444  78888888888877766654

>PRK04132 replication factor C small subunit; Provisional

Probab=98.82  E-value=3.5e-08  Score=105.29  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=97.6

Q ss_pred             EEEc--CCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh--cCceEEEeccccc
Q 019694           25 GIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLMINDLDA   95 (337)
Q Consensus        25 LL~G--pPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~--~~p~Il~IDEiD~   95 (337)
                      +..|  |++.||||+|+++|+++     +.+++.+++++..      +...||+..+.+.....-  ....|+||||+|.
T Consensus       568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~  641 (846)
T PRK04132        568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA  641 (846)
T ss_pred             hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence            4568  99999999999999998     5689999998632      234566666655222111  1347999999998


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTRED  174 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~  174 (337)
                      +..             ..++.|+.+++             .....+.+|++||+++.+.++++.  |+..+-.- |+.++
T Consensus       642 Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~  693 (846)
T PRK04132        642 LTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED  693 (846)
T ss_pred             CCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHH
Confidence            732             12344555555             445678999999999999999875  65443333 78888


Q ss_pred             HHHHHHHhccCCCC--CHHHHHHHhcCCC
Q 019694          175 RIGVCKGIFRNDNV--ADDDIVKLVDTFP  201 (337)
Q Consensus       175 R~~Il~~~~~~~~l--~~~~la~l~~gf~  201 (337)
                      ...+++.+....++  +.+.+..++....
T Consensus       694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~  722 (846)
T PRK04132        694 IAKRLRYIAENEGLELTEEGLQAILYIAE  722 (846)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence            88888877766554  4555544443333

>PRK08181 transposase; Validated

Probab=98.80  E-value=4e-09  Score=99.27  Aligned_cols=101  Identities=19%  Similarity=0.210  Sum_probs=60.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      ...+++|+||||||||+||.++++++   |..++.++..++........ .......++      +-.++.+|+|||+..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~  178 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAY  178 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence            45689999999999999999998754   66777777766554321000 000111111      124678999999975


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      .....           .....|.++++        ..+     .+-++|+|||.+
T Consensus       179 ~~~~~-----------~~~~~Lf~lin--------~R~-----~~~s~IiTSN~~  209 (269)
T PRK08181        179 VTKDQ-----------AETSVLFELIS--------ARY-----ERRSILITANQP  209 (269)
T ss_pred             ccCCH-----------HHHHHHHHHHH--------HHH-----hCCCEEEEcCCC
Confidence            43211           12334555555        111     123799999975

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.80  E-value=9.5e-09  Score=95.38  Aligned_cols=99  Identities=12%  Similarity=0.264  Sum_probs=62.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH----HHHHH-hcCceEEEecc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----ADIIK-KGKMCCLMIND   92 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A----~~~~~-~~~p~Il~IDE   92 (337)
                      ..+++|+|+||||||+|+.++|+++   +..++.++.+++.+..        +..|..+    ..++. -....+|+|||
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l--------~~~~~~~~~~~~~~l~~l~~~dlLvIDD  170 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM--------KDTFSNSETSEEQLLNDLSNVDLLVIDE  170 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH--------HHHHhhccccHHHHHHHhccCCEEEEeC
Confidence            3589999999999999999999987   6777788777665321        1122100    01111 23578999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ++....           .......|.++++        .    ....+.++|+|||..
T Consensus       171 ig~~~~-----------s~~~~~~l~~Ii~--------~----Ry~~~~~tiitSNl~  205 (244)
T PRK07952        171 IGVQTE-----------SRYEKVIINQIVD--------R----RSSSKRPTGMLTNSN  205 (244)
T ss_pred             CCCCCC-----------CHHHHHHHHHHHH--------H----HHhCCCCEEEeCCCC
Confidence            976421           1122234444554        1    123456899999964

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=98.80  E-value=1.1e-08  Score=107.15  Aligned_cols=144  Identities=19%  Similarity=0.194  Sum_probs=86.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh-----------------------------------CCCcEEecCCccccCCCCChH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA   66 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l-----------------------------------~~~~i~vs~s~l~~~~~Ge~~   66 (337)
                      .+|||+|+||||||++|+++++.+                                   ..+|+.+..+...+..+|.-.
T Consensus        26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d  105 (633)
T TIGR02442        26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD  105 (633)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence            579999999999999999999887                                   235555544433333344310


Q ss_pred             HHHHHHHHHH-----HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCC
Q 019694           67 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR  140 (337)
Q Consensus        67 ~~ir~~f~~A-----~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~  140 (337)
                        +...+...     ..++......|||||||+.+..             .+...|++.++... .+.-.|.. .....+
T Consensus       106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~  169 (633)
T TIGR02442       106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR  169 (633)
T ss_pred             --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence              11111100     0111222456999999987532             23345556665322 22222321 123467


Q ss_pred             ceEEEEeCCC-CCCcchhccCCCceEEEeC---CCHHHHHHHHHHhc
Q 019694          141 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIF  183 (337)
Q Consensus       141 V~vI~TTN~~-~~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~  183 (337)
                      +.+|+|+|-. ..+.++|+.  ||+..+.+   .+.+++.+|+....
T Consensus       170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~  214 (633)
T TIGR02442       170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL  214 (633)
T ss_pred             eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence            8999999954 368888886  89888888   34677888876543

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.77  E-value=1.1e-07  Score=91.48  Aligned_cols=160  Identities=14%  Similarity=0.188  Sum_probs=99.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----------e---cCCccc----c-CCCCC------hHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------M---SAGELE----S-GNAGE------PAKLIRQR   72 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----------v---s~s~l~----~-~~~Ge------~~~~ir~~   72 (337)
                      .-+.|.++||+||+|+||+++|.++|+.+-..--.          +   +-.++.    . ...|.      ....||++
T Consensus        22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l  101 (319)
T PRK08769         22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI  101 (319)
T ss_pred             cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence            44789999999999999999999999876432100          0   000110    0 01111      12344544


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      -+.+...-..+.-.|++||++|.+...            .. +.|+..++             ++..++.+|.+|+.++.
T Consensus       102 ~~~~~~~p~~g~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~~~fiL~~~~~~~  155 (319)
T PRK08769        102 SQKLALTPQYGIAQVVIVDPADAINRA------------AC-NALLKTLE-------------EPSPGRYLWLISAQPAR  155 (319)
T ss_pred             HHHHhhCcccCCcEEEEeccHhhhCHH------------HH-HHHHHHhh-------------CCCCCCeEEEEECChhh
Confidence            444311112345579999999976321            12 23334444             56678899999999999


Q ss_pred             CcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHhH
Q 019694          153 LYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~~  208 (337)
                      |.|.++.  |+-.+... |+.++-.+.+..    .+++..   .+..++.|-++..+++.
T Consensus       156 lLpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        156 LPATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             CchHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHHHHh
Confidence            9999875  66654444 888887777753    245554   56677777777666553

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.76  E-value=2.7e-08  Score=96.52  Aligned_cols=85  Identities=16%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-CCcchhccC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD  160 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-~ld~aLlR~  160 (337)
                      ....+||||||+.+..             .+++.|++.++... .+.-.|.. .....++++|+|+|-.+ .++++|+. 
T Consensus       130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld-  194 (337)
T TIGR02030       130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD-  194 (337)
T ss_pred             ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh-
Confidence            3568999999987532             33455666665321 12223331 12345778888888544 68999986 


Q ss_pred             CCceEEEeC--CCH-HHHHHHHHHhc
Q 019694          161 GRMEKFYWA--PTR-EDRIGVCKGIF  183 (337)
Q Consensus       161 gR~d~~i~~--P~~-~~R~~Il~~~~  183 (337)
                       ||...+.+  |.. ++|.+|++...
T Consensus       195 -Rf~l~i~l~~p~~~eer~eIL~~~~  219 (337)
T TIGR02030       195 -RFGLHAEIRTVRDVELRVEIVERRT  219 (337)
T ss_pred             -hcceEEECCCCCCHHHHHHHHHhhh
Confidence             88888888  554 88999987744

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.75  E-value=1e-07  Score=92.00  Aligned_cols=162  Identities=9%  Similarity=0.052  Sum_probs=97.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--EecC--------------Ccc--ccCCCCC--hHHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--MMSA--------------GEL--ESGNAGE--PAKLIRQRYREAA   77 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--~vs~--------------s~l--~~~~~Ge--~~~~ir~~f~~A~   77 (337)
                      -+.|.++||+||+|+||+++|+++|+.+-..--  .-.+              .++  .....|.  ....||++-+.+.
T Consensus        21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~  100 (325)
T PRK06871         21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS  100 (325)
T ss_pred             CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence            477899999999999999999999998743110  0000              011  1111111  2345565544442


Q ss_pred             HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                      .....+.-.|++||++|++...            . ...|+..++             ++.+++.+|.+|++++.|.|.+
T Consensus       101 ~~~~~g~~KV~iI~~a~~m~~~------------A-aNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI  154 (325)
T PRK06871        101 QHAQQGGNKVVYIQGAERLTEA------------A-ANALLKTLE-------------EPRPNTYFLLQADLSAALLPTI  154 (325)
T ss_pred             hccccCCceEEEEechhhhCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEECChHhCchHH
Confidence            2223566689999999976321            1 233444444             6678889999999999999998


Q ss_pred             ccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHh
Q 019694          158 IRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       158 lR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.  |+-.+... |+.++-.+.+........-....+..++.|-++..+++
T Consensus       155 ~S--RC~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~~A~~~  203 (325)
T PRK06871        155 YS--RCQTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPLLALTF  203 (325)
T ss_pred             Hh--hceEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHHHHHHH
Confidence            75  55554444 77888877776543221111123344555555544444

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.75  E-value=2.4e-07  Score=84.84  Aligned_cols=154  Identities=14%  Similarity=0.208  Sum_probs=97.9

Q ss_pred             chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694            2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus         2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~   78 (337)
                      |++-..+++|......-.+-..|||||..|||||+|+||+-++.   |..++.|+..++..         +-.+++.-  
T Consensus        66 d~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~L--  134 (287)
T COG2607          66 DRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELL--  134 (287)
T ss_pred             hHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHH--
Confidence            45555566666664444566789999999999999999998776   56677887765432         11233322  


Q ss_pred             HHH-hcCceEEEecccccccccCC-CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694           79 IIK-KGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP  156 (337)
Q Consensus        79 ~~~-~~~p~Il~IDEiD~l~~~~~-~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a  156 (337)
                        + ....-|||+||+-     +. |.+.+        ..|...++        |. ......+|+|.+|+|+-+.|+.-
T Consensus       135 --r~~~~kFIlFcDDLS-----Fe~gd~~y--------K~LKs~Le--------G~-ve~rP~NVl~YATSNRRHLl~e~  190 (287)
T COG2607         135 --RARPEKFILFCDDLS-----FEEGDDAY--------KALKSALE--------GG-VEGRPANVLFYATSNRRHLLPED  190 (287)
T ss_pred             --hcCCceEEEEecCCC-----CCCCchHH--------HHHHHHhc--------CC-cccCCCeEEEEEecCCcccccHh
Confidence              4 5567899999872     11 11111        23333344        33 22346789999999999887744


Q ss_pred             hc--------------------cCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH
Q 019694          157 LI--------------------RDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD  190 (337)
Q Consensus       157 Ll--------------------R~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~  190 (337)
                      +.                    =..||-..+-+  ++.++=..|+..+.+..+++.
T Consensus       191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~  246 (287)
T COG2607         191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI  246 (287)
T ss_pred             hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence            32                    12355555555  677777777777776665554

>PRK06526 transposase; Provisional

Probab=98.74  E-value=6.4e-09  Score=97.12  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=44.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ++.+.+++|+||||||||+||.+++.++   |..++.++..++........   ....+..  .+.+-..+.+|+|||++
T Consensus        95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~---~~~~~~~--~l~~l~~~dlLIIDD~g  169 (254)
T PRK06526         95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH---HAGRLQA--ELVKLGRYPLLIVDEVG  169 (254)
T ss_pred             hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH---hcCcHHH--HHHHhccCCEEEEcccc
Confidence            3456789999999999999999998875   55555555554432211000   0000000  11122457899999998


Q ss_pred             cc
Q 019694           95 AG   96 (337)
Q Consensus        95 ~l   96 (337)
                      ..
T Consensus       170 ~~  171 (254)
T PRK06526        170 YI  171 (254)
T ss_pred             cC
Confidence            64

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=4.6e-08  Score=102.87  Aligned_cols=140  Identities=19%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +....-+|.|+||+|||.++.-+|...          +..++.++.+.+.  .+|-|+-+..++.+.++.    ++..+.
T Consensus       189 R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~v  264 (786)
T COG0542         189 RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNV  264 (786)
T ss_pred             cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCe
Confidence            334445789999999999999998864          4567788887775  468899999999988888    766699


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g  161 (337)
                      |||||||..+.+.-+......-..-++.-.|                   .++.+-+|++|...+     .=|+||-|  
T Consensus       265 ILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--  323 (786)
T COG0542         265 ILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER--  323 (786)
T ss_pred             EEEEechhhhcCCCcccccccchhhhhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--
Confidence            9999999998865331110000011111111                   245567787776422     45899999  


Q ss_pred             CceEEEeC-CCHHHHHHHHHHhc
Q 019694          162 RMEKFYWA-PTREDRIGVCKGIF  183 (337)
Q Consensus       162 R~d~~i~~-P~~~~R~~Il~~~~  183 (337)
                      ||-.+.-- |+.++-..|++.+-
T Consensus       324 RFQ~V~V~EPs~e~ti~ILrGlk  346 (786)
T COG0542         324 RFQKVLVDEPSVEDTIAILRGLK  346 (786)
T ss_pred             cCceeeCCCCCHHHHHHHHHHHH
Confidence            88885555 99999999977654

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.71  E-value=2.1e-07  Score=96.99  Aligned_cols=43  Identities=23%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             HhhhhcC--CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694            9 TKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus         9 ~k~~l~~--~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ++.++..  .+..+.+.++|+||||||||++++.+|++++..++.
T Consensus        96 l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E  140 (637)
T TIGR00602        96 VETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE  140 (637)
T ss_pred             HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence            4455542  233445679999999999999999999999876543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.70  E-value=1e-08  Score=90.78  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=43.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChH-HHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~-~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ++...+++|+||||||||+||.++++++   |..+..++.++|......... ......+..      -....+|+|||+
T Consensus        44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~------l~~~dlLilDDl  117 (178)
T PF01695_consen   44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR------LKRVDLLILDDL  117 (178)
T ss_dssp             -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH------HHTSSCEEEETC
T ss_pred             cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc------cccccEeccccc
Confidence            4557899999999999999999998865   778888888776433211100 001112222      235679999998


Q ss_pred             c
Q 019694           94 D   94 (337)
Q Consensus        94 D   94 (337)
                      -
T Consensus       118 G  118 (178)
T PF01695_consen  118 G  118 (178)
T ss_dssp             T
T ss_pred             c
Confidence            4

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.69  E-value=3.1e-07  Score=88.37  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=99.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc----------EEecCCccc--cC---CCCC------------------
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------   64 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~----------i~vs~s~l~--~~---~~Ge------------------   64 (337)
                      -+.|.++||+||+|+||+++|.++|+.+-..-          ...+.+++.  ..   ..|+                  
T Consensus        23 ~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~  102 (314)
T PRK07399         23 NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPP  102 (314)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccc
Confidence            36788999999999999999999999863321          011111111  00   0011                  


Q ss_pred             --hHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694           65 --PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP  142 (337)
Q Consensus        65 --~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~  142 (337)
                        ....+|++-+.+...-..+...|++||++|.+-.             .....|+..++             ++. +..
T Consensus       103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~  155 (314)
T PRK07399        103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGT  155 (314)
T ss_pred             cCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCe
Confidence              0123455444431111245678999999987621             11234444555             333 557


Q ss_pred             EEEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--HHHHHHhcCCCchhhHhH
Q 019694          143 IIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       143 vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~~la~l~~gf~gadl~~~  208 (337)
                      +|.+|++++.|.|.++.  |+-.+..- |+.++..+++.........+.  ..+..++.|-++..++..
T Consensus       156 fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~l  222 (314)
T PRK07399        156 LILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANI  222 (314)
T ss_pred             EEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHHH
Confidence            88888999999999875  55443333 888999998887655444443  667777777777666543

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.69  E-value=3.8e-08  Score=94.30  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=46.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH--HHHHHH-hcCceEEEeccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE--AADIIK-KGKMCCLMINDL   93 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~--A~~~~~-~~~p~Il~IDEi   93 (337)
                      ..+|++|+||||||||+|+.|+|+++   |..+..+..+++....        +..|..  ..+.++ -....+|+||||
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l~~~dlLiIDDi  226 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAVKEAPVLMLDDI  226 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence            56899999999999999999999987   6777777766554321        111110  001111 346779999999


Q ss_pred             cc
Q 019694           94 DA   95 (337)
Q Consensus        94 D~   95 (337)
                      ..
T Consensus       227 G~  228 (306)
T PRK08939        227 GA  228 (306)
T ss_pred             CC
Confidence            53

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=98.68  E-value=4.9e-08  Score=94.52  Aligned_cols=133  Identities=15%  Similarity=0.209  Sum_probs=78.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p   85 (337)
                      ....|||+|++||||+++|++|....   +.+|+.++++.+-...      .-..+|....           +.+.....
T Consensus        21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~g   94 (329)
T TIGR02974        21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADG   94 (329)
T ss_pred             CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCC
Confidence            34569999999999999999997655   3689999998653211      1112222110           01123357


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI  158 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl  158 (337)
                      ..|||||||.+..             .++..|+.++++.....+.+.  .....++.||+|||..       ..+.+.|.
T Consensus        95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~  159 (329)
T TIGR02974        95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLL  159 (329)
T ss_pred             CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence            8999999997642             234455556553222222221  1224567899999853       23334444


Q ss_pred             cCCCce-EEEeCCCHHHH
Q 019694          159 RDGRME-KFYWAPTREDR  175 (337)
Q Consensus       159 R~gR~d-~~i~~P~~~~R  175 (337)
                      .  |+. ..+.+|...+|
T Consensus       160 ~--rl~~~~i~lPpLReR  175 (329)
T TIGR02974       160 D--RLAFDVITLPPLRER  175 (329)
T ss_pred             H--HhcchhcCCCchhhh
Confidence            3  443 34556887776

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK06921 hypothetical protein; Provisional

Probab=98.67  E-value=9e-08  Score=90.02  Aligned_cols=68  Identities=16%  Similarity=0.201  Sum_probs=45.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH-HhcCceEEEecccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLD   94 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~-~~~~p~Il~IDEiD   94 (337)
                      ...+++|+||||+|||+|+.++|+++    |..++.++..++..        .++..|....+.+ .-....+|+|||+.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~  187 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLF  187 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            35789999999999999999999986    55666666554432        1222332221121 23467899999995


Q ss_pred             c
Q 019694           95 A   95 (337)
Q Consensus        95 ~   95 (337)
                      .
T Consensus       188 ~  188 (266)
T PRK06921        188 K  188 (266)
T ss_pred             c
Confidence            4

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.67  E-value=2.4e-07  Score=89.67  Aligned_cols=136  Identities=13%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCCh--HHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEP--AKLIR   70 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~--~~~ir   70 (337)
                      .-+.|..+|||||+|+|||++|+++|+.+-..                        +..+..       .|..  ...||
T Consensus        24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~-------~~~~i~id~ir   96 (329)
T PRK08058         24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP-------DGQSIKKDQIR   96 (329)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc-------ccccCCHHHHH
Confidence            34678999999999999999999999986432                        111111       1111  12344


Q ss_pred             HHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           71 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        71 ~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ++-+.....-..+...|++|||+|.+...             ....|+..++             ++...+.+|.+|+.+
T Consensus        97 ~l~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LE-------------EPp~~~~~Il~t~~~  150 (329)
T PRK08058         97 YLKEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLE-------------EPSGGTTAILLTENK  150 (329)
T ss_pred             HHHHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhc-------------CCCCCceEEEEeCCh
Confidence            44433311001345679999999865311             1234445555             455677888899999


Q ss_pred             CCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH
Q 019694          151 STLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD  191 (337)
Q Consensus       151 ~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~  191 (337)
                      +.|.+.++.  |+-.+... |+.++-.++++.    .+++..
T Consensus       151 ~~ll~TIrS--Rc~~i~~~~~~~~~~~~~L~~----~gi~~~  186 (329)
T PRK08058        151 HQILPTILS--RCQVVEFRPLPPESLIQRLQE----EGISES  186 (329)
T ss_pred             HhCcHHHHh--hceeeeCCCCCHHHHHHHHHH----cCCChH
Confidence            999999876  54443333 777777776653    346553

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.67  E-value=3.8e-08  Score=95.20  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=44.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH---HHH-HHHhcCceEEEecccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AAD-IIKKGKMCCLMINDLD   94 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~---A~~-~~~~~~p~Il~IDEiD   94 (337)
                      .+++||||||||||+|+.++|+++   |..++.++..++......       ..|..   ... +-.-....+|+|||+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~-------~~~~~~~~~~~~~~~l~~~DLLIIDDlG  256 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE-------IRFNNDKELEEVYDLLINCDLLIIDDLG  256 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH-------HHhccchhHHHHHHHhccCCEEEEeccC
Confidence            789999999999999999999986   667778887766432210       00100   000 1112355799999995


Q ss_pred             c
Q 019694           95 A   95 (337)
Q Consensus        95 ~   95 (337)
                      .
T Consensus       257 ~  257 (329)
T PRK06835        257 T  257 (329)
T ss_pred             C
Confidence            4

>PRK13531 regulatory ATPase RavA; Provisional

Probab=98.66  E-value=7.3e-08  Score=96.89  Aligned_cols=137  Identities=13%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC-ccccCCCCCh-HHHH--HHHHHHHHHHHHhc---CceEEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLMIN   91 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s-~l~~~~~Ge~-~~~i--r~~f~~A~~~~~~~---~p~Il~ID   91 (337)
                      ...|||+||||||||++|++++..++.  +|...... ..-+..+|.. ....  ...|...    ..+   ...+||+|
T Consensus        39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfLD  114 (498)
T PRK13531         39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFLD  114 (498)
T ss_pred             CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEeec
Confidence            456999999999999999999998753  33322221 0111222321 0110  1122211    111   23499999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc------hhccCCCceE
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA------PLIRDGRMEK  165 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~------aLlR~gR~d~  165 (337)
                      ||....             ......|++.+..-. +..++.  ....+..++++|||.   +|.      ++.-  ||-.
T Consensus       115 EI~ras-------------p~~QsaLLeam~Er~-~t~g~~--~~~lp~rfiv~ATN~---LPE~g~~leAL~D--RFli  173 (498)
T PRK13531        115 EIWKAG-------------PAILNTLLTAINERR-FRNGAH--EEKIPMRLLVTASNE---LPEADSSLEALYD--RMLI  173 (498)
T ss_pred             ccccCC-------------HHHHHHHHHHHHhCe-EecCCe--EEeCCCcEEEEECCC---CcccCCchHHhHh--hEEE
Confidence            996432             133455666664221 111221  122334456666673   554      7774  7866


Q ss_pred             EEeC--CC-HHHHHHHHHHh
Q 019694          166 FYWA--PT-REDRIGVCKGI  182 (337)
Q Consensus       166 ~i~~--P~-~~~R~~Il~~~  182 (337)
                      .+.+  |+ .++-.+|+...
T Consensus       174 ri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        174 RLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             EEECCCCCchHHHHHHHHcc
Confidence            7777  54 34557777653

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.66  E-value=1.8e-07  Score=90.67  Aligned_cols=160  Identities=14%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-cE-EecC--------------Ccc--ccCCCC---ChHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PI-MMSA--------------GEL--ESGNAG---EPAKLIRQRYRE   75 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-~i-~vs~--------------s~l--~~~~~G---e~~~~ir~~f~~   75 (337)
                      .-+.|-++||+||+|+||+++|.++|+.+-.. .- ...+              .++  .....+   -+...||++-+.
T Consensus        20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~   99 (334)
T PRK07993         20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK   99 (334)
T ss_pred             cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence            45789999999999999999999999987431 00 0000              011  001111   123345555544


Q ss_pred             HHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694           76 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA  155 (337)
Q Consensus        76 A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~  155 (337)
                      +...-..+.-.|++||++|++-..            .. ..|+..++             ++..++++|.+|++++.|.|
T Consensus       100 ~~~~~~~g~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~t~fiL~t~~~~~lLp  153 (334)
T PRK07993        100 LYEHARLGGAKVVWLPDAALLTDA------------AA-NALLKTLE-------------EPPENTWFFLACREPARLLA  153 (334)
T ss_pred             HhhccccCCceEEEEcchHhhCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhChH
Confidence            422223567789999999976321            22 34444545             56778899999999999999


Q ss_pred             hhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhhHh
Q 019694          156 PLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDF  207 (337)
Q Consensus       156 aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl~~  207 (337)
                      .++.  |+-.+..- |+.++..+.+...   .+++.+   .++.++.|-++..+++
T Consensus       154 TIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a~~~~~la~G~~~~Al~l  204 (334)
T PRK07993        154 TLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDALLAALRLSAGAPGAALAL  204 (334)
T ss_pred             HHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            9876  44443222 7777777776532   245554   4455666766655554

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.65  E-value=9.5e-08  Score=77.39  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      |.||||||+|||++|+.+|+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999988775

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.64  E-value=1.7e-06  Score=80.38  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC-CcEE--ecCCc---------ccc----CCCCCh-HHHHHHHHHHHHHHHHhc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGE---------LES----GNAGEP-AKLIRQRYREAADIIKKG   83 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~--vs~s~---------l~~----~~~Ge~-~~~ir~~f~~A~~~~~~~   83 (337)
                      +..++|+||+|+|||++++.+++++.. .+..  +....         +..    ...+.. ...++.+..........+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~  122 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG  122 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            446889999999999999999998763 2221  11111         110    111111 112223333332334577


Q ss_pred             CceEEEecccccc
Q 019694           84 KMCCLMINDLDAG   96 (337)
Q Consensus        84 ~p~Il~IDEiD~l   96 (337)
                      .+.+|+|||++.+
T Consensus       123 ~~~vliiDe~~~l  135 (269)
T TIGR03015       123 KRALLVVDEAQNL  135 (269)
T ss_pred             CCeEEEEECcccC
Confidence            8899999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.63  E-value=8.7e-07  Score=85.34  Aligned_cols=160  Identities=17%  Similarity=0.202  Sum_probs=98.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-e--------------cCCcc--ccCC-CCC--hHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-M--------------SAGEL--ESGN-AGE--PAKLIRQRYREA   76 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-v--------------s~s~l--~~~~-~Ge--~~~~ir~~f~~A   76 (337)
                      .-+.|.++||+||.|+||+++|+++|+.+-..--. .              +-.++  .... .|.  ....||++-+.+
T Consensus        21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~  100 (319)
T PRK06090         21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA  100 (319)
T ss_pred             cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence            45789999999999999999999999976431100 0              00111  0000 111  123445543333


Q ss_pred             HHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694           77 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP  156 (337)
Q Consensus        77 ~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a  156 (337)
                      ......+.-.|++||++|.+...            .. ..|+..++             ++..++.+|.+|++++.|.|.
T Consensus       101 ~~~~~~~~~kV~iI~~ae~m~~~------------Aa-NaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpT  154 (319)
T PRK06090        101 QESSQLNGYRLFVIEPADAMNES------------AS-NALLKTLE-------------EPAPNCLFLLVTHNQKRLLPT  154 (319)
T ss_pred             hhCcccCCceEEEecchhhhCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhChHH
Confidence            22222455679999999976321            22 33444444             567788999999999999999


Q ss_pred             hccCCCceEEEeC-CCHHHHHHHHHHhccCCCCC-HHHHHHHhcCCCchhhHhH
Q 019694          157 LIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDFF  208 (337)
Q Consensus       157 LlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~-~~~la~l~~gf~gadl~~~  208 (337)
                      ++.  |+-.+... |+.++..+.+...    +++ ...+..++.|-++..+++.
T Consensus       155 I~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~~  202 (319)
T PRK06090        155 IVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAMM  202 (319)
T ss_pred             HHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHHh
Confidence            875  65554433 8888888877542    233 3456667777776666553

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.62  E-value=2.6e-07  Score=91.22  Aligned_cols=177  Identities=19%  Similarity=0.225  Sum_probs=101.6

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHH
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~   78 (337)
                      ++..+++.+-..+|. .-.-++||||.|.|||+|++|++++..     ..++.++...+...++-..-..=-+-|++-  
T Consensus        97 ~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~--  173 (408)
T COG0593          97 LAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK--  173 (408)
T ss_pred             HHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh--
Confidence            445566666666654 223389999999999999999988763     235555555443222111000000122222  


Q ss_pred             HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Cc
Q 019694           79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LY  154 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld  154 (337)
                          ..-.+++||||+.+.++..  .     ...+..++-.+.+               .++ -||.|+.+ |..   +.
T Consensus       174 ----y~~dlllIDDiq~l~gk~~--~-----qeefFh~FN~l~~---------------~~k-qIvltsdr~P~~l~~~~  226 (408)
T COG0593         174 ----YSLDLLLIDDIQFLAGKER--T-----QEEFFHTFNALLE---------------NGK-QIVLTSDRPPKELNGLE  226 (408)
T ss_pred             ----hccCeeeechHhHhcCChh--H-----HHHHHHHHHHHHh---------------cCC-EEEEEcCCCchhhcccc
Confidence                2456899999998876543  1     1233333333322               122 45555544 444   44


Q ss_pred             chhccCCCce--EEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCchhhHhHHHHH
Q 019694          155 APLIRDGRME--KFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSIDFFGALR  212 (337)
Q Consensus       155 ~aLlR~gR~d--~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~gadl~~~~alr  212 (337)
                      +.|..  ||.  ..+.+  |+.+.|.+|++......+  ++.+.+.-++..++..=-+..+++.
T Consensus       227 ~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~  288 (408)
T COG0593         227 DRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN  288 (408)
T ss_pred             HHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence            66765  554  44555  999999999998776554  4556666666666654434445543

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=98.61  E-value=2e-07  Score=90.09  Aligned_cols=133  Identities=15%  Similarity=0.198  Sum_probs=78.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p   85 (337)
                      .+.-|||+|++||||+++|++|....   +.+|+.++++.+...      ..-..+|...           ...+.....
T Consensus        28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~g  101 (326)
T PRK11608         28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADG  101 (326)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCC
Confidence            35569999999999999999997654   468999999875311      0111222211           011123356


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI  158 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl  158 (337)
                      ..|||||||.+..             .++..|+++++........+.  .....++.||+||+..       ..+.+.|.
T Consensus       102 GtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~  166 (326)
T PRK11608        102 GTLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLL  166 (326)
T ss_pred             CeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence            7899999997642             233455555553211111111  1123467889988763       23445555


Q ss_pred             cCCCc-eEEEeCCCHHHH
Q 019694          159 RDGRM-EKFYWAPTREDR  175 (337)
Q Consensus       159 R~gR~-d~~i~~P~~~~R  175 (337)
                      .  || ...+.+|...+|
T Consensus       167 ~--~l~~~~i~lPpLReR  182 (326)
T PRK11608        167 D--RLAFDVVQLPPLRER  182 (326)
T ss_pred             H--hcCCCEEECCChhhh
Confidence            3  55 446777888777

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.58  E-value=1.2e-07  Score=91.14  Aligned_cols=60  Identities=22%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA   77 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~   77 (337)
                      |-..-+|||+.||||||||.||-++|++||  .||..+++|++.+..+..++.+ .+.|++|.
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI  122 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI  122 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence            545679999999999999999999999997  7999999999999888887554 57777773

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.57  E-value=4e-07  Score=88.01  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------------------cEEecCCccccCCCC-----ChHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAKL   68 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------------------~i~vs~s~l~~~~~G-----e~~~~   68 (337)
                      +.|.++||+||+|+|||++|+.+|+.+...                         ++.++...- ....|     -....
T Consensus        19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~   97 (325)
T PRK08699         19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA   97 (325)
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence            889999999999999999999999986431                         222322100 00011     12345


Q ss_pred             HHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC
Q 019694           69 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN  148 (337)
Q Consensus        69 ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN  148 (337)
                      ||++-+.+...-..+...|++||++|.+-..             ....|+..++             +...++.+|++|+
T Consensus        98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth  151 (325)
T PRK08699         98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH  151 (325)
T ss_pred             HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence            6666555522112456679999999875321             1223334444             2224467888999


Q ss_pred             CCCCCcchhccCCCceEEEeC-CCHHHHHHHHHH
Q 019694          149 DFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKG  181 (337)
Q Consensus       149 ~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~  181 (337)
                      +++.+.+.+.+  |+-.+... |+.++..+.+..
T Consensus       152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence            99999999876  44333223 778877777654

>PRK09183 transposase/IS protein; Provisional

Probab=98.57  E-value=5.3e-08  Score=91.19  Aligned_cols=74  Identities=15%  Similarity=0.091  Sum_probs=45.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCC-hHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge-~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      +.....++|+||||||||+|+.+++.++   |..+..++..++...+... ....+...+...     ...+.+++|||+
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl  173 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI  173 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence            4455689999999999999999997664   6666666655543221100 000011222221     346789999999


Q ss_pred             ccc
Q 019694           94 DAG   96 (337)
Q Consensus        94 D~l   96 (337)
                      +..
T Consensus       174 g~~  176 (259)
T PRK09183        174 GYL  176 (259)
T ss_pred             ccC
Confidence            754

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.56  E-value=4e-07  Score=92.33  Aligned_cols=167  Identities=16%  Similarity=0.224  Sum_probs=104.2

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc--E-----------EecCCccc-----cCCCCChHH
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--I-----------MMSAGELE-----SGNAGEPAK   67 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~--i-----------~vs~s~l~-----~~~~Ge~~~   67 (337)
                      +..++|.+.  .-+..-+.||.||-|||||++||.+|+.+++.-  .           .+..+.+.     +.-...+..
T Consensus        25 ~~~L~nal~--~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVd  102 (515)
T COG2812          25 VKTLSNALE--NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVD  102 (515)
T ss_pred             HHHHHHHHH--hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChH
Confidence            334444443  336678999999999999999999999987642  1           11111110     001112334


Q ss_pred             HHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe
Q 019694           68 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG  147 (337)
Q Consensus        68 ~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT  147 (337)
                      .+|++-+++.-.--.++.-|.+|||++-+.            .+..+++| ..+             +++...|.+|.+|
T Consensus       103 diR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALL-KTL-------------EEPP~hV~FIlAT  156 (515)
T COG2812         103 DIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALL-KTL-------------EEPPSHVKFILAT  156 (515)
T ss_pred             HHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHh-ccc-------------ccCccCeEEEEec
Confidence            566666665111116677899999997543            22334444 222             2567889999999


Q ss_pred             CCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCH--HHHHHHhcCCCc
Q 019694          148 NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPG  202 (337)
Q Consensus       148 N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~--~~la~l~~gf~g  202 (337)
                      ..++.+|+-++.  |+-++-+- -+.++....+..++..+++..  +.+..+.....|
T Consensus       157 Te~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G  212 (515)
T COG2812         157 TEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG  212 (515)
T ss_pred             CCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence            999999999875  44443333 667788888888888776654  555555555555

>TIGR01817 nifA Nif-specific regulatory protein

Probab=98.51  E-value=3.3e-07  Score=94.20  Aligned_cols=132  Identities=12%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p   85 (337)
                      ...-|||+|++|||||++|++|....   +.+|+.++++.+-..      ..-..+|....           ..+.....
T Consensus       218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~  291 (534)
T TIGR01817       218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET------LLESELFGHEKGAFTGAIAQRKGRFELADG  291 (534)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH------HHHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence            34569999999999999999998875   468999999876221      11112222110           01122356


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc--
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--  163 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~--  163 (337)
                      ..|||||||.+..             .++..|+.+++........+.  .....++.+|+|||..  +.. ++..|+|  
T Consensus       292 GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~--l~~-~~~~~~f~~  353 (534)
T TIGR01817       292 GTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD--LEE-AVAKGEFRA  353 (534)
T ss_pred             CeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC--HHH-HHHcCCCCH
Confidence            7899999997642             234455566653221111121  1123457889988753  111 2334444  


Q ss_pred             -------eEEEeCCCHHHH
Q 019694          164 -------EKFYWAPTREDR  175 (337)
Q Consensus       164 -------d~~i~~P~~~~R  175 (337)
                             ...+.+|...+|
T Consensus       354 ~L~~rl~~~~i~lPpLreR  372 (534)
T TIGR01817       354 DLYYRINVVPIFLPPLRER  372 (534)
T ss_pred             HHHHHhcCCeeeCCCcccc
Confidence                   234666877666

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.51  E-value=2.5e-07  Score=90.62  Aligned_cols=32  Identities=31%  Similarity=0.609  Sum_probs=28.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +...+|+||.||||+|+|||+|.-+..+.+..
T Consensus        57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            34678999999999999999999999998765

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.50  E-value=9e-07  Score=82.71  Aligned_cols=67  Identities=22%  Similarity=0.369  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH---HHHHHH-hcCceEEEecc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND   92 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~---A~~~~~-~~~p~Il~IDE   92 (337)
                      -+.+++|+||||+|||+||-|+++++   |..++.+..+++...        +...|..   ..++.+ -....+|+|||
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDD  175 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDD  175 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence            67899999999999999999998876   778888888876532        2333332   122333 34567999999


Q ss_pred             cc
Q 019694           93 LD   94 (337)
Q Consensus        93 iD   94 (337)
                      +=
T Consensus       176 lG  177 (254)
T COG1484         176 IG  177 (254)
T ss_pred             cc
Confidence            83

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=98.49  E-value=4.3e-07  Score=79.09  Aligned_cols=113  Identities=16%  Similarity=0.154  Sum_probs=69.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      -+.|..+||+||+|+||+++|+++|+.+-..                       ++.++...-.. .  -....++.+..
T Consensus        16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~-~--i~i~~ir~i~~   92 (162)
T PF13177_consen   16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK-S--IKIDQIREIIE   92 (162)
T ss_dssp             TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS-S--BSHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc-h--hhHHHHHHHHH
Confidence            3779999999999999999999999986332                       22222211100 0  12244555544


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      ........+..-|++|||+|.+..             .....|+..++             ++..++.+|++|++++.|.
T Consensus        93 ~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il  146 (162)
T PF13177_consen   93 FLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKIL  146 (162)
T ss_dssp             HCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-
T ss_pred             HHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHCh
Confidence            441111245678999999997632             12234444555             5567889999999999999


Q ss_pred             chhcc
Q 019694          155 APLIR  159 (337)
Q Consensus       155 ~aLlR  159 (337)
                      +.++.
T Consensus       147 ~TI~S  151 (162)
T PF13177_consen  147 PTIRS  151 (162)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99886

...

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.49  E-value=1.8e-07  Score=90.79  Aligned_cols=56  Identities=21%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      --++|||.||||||||.||-++|+++|  .||..+++|++.+..+..++. +.+.|++|
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~Rra  106 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFRRA  106 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHHCS
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHHHh
Confidence            468999999999999999999999998  799999999999988777643 34666665

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=98.48  E-value=2e-07  Score=97.80  Aligned_cols=132  Identities=13%  Similarity=0.109  Sum_probs=77.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH---H-----HHHHhcCceEEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLM   89 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A---~-----~~~~~~~p~Il~   89 (337)
                      ..-|||+|++||||+++|++|.+..   +.+|+.++++.+-..      ..-.++|..+   .     ..+.......||
T Consensus       348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~  421 (638)
T PRK11388        348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE------ALAEEFLGSDRTDSENGRLSKFELAHGGTLF  421 (638)
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH------HHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence            3449999999999999999998865   368999998865211      1111233211   0     011123567899


Q ss_pred             ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc------
Q 019694           90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------  163 (337)
Q Consensus        90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~------  163 (337)
                      |||||.+..             .++..|+.+++......+++.  ....-++.||+|||..-   ..+...|+|      
T Consensus       422 ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~  483 (638)
T PRK11388        422 LEKVEYLSP-------------ELQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY  483 (638)
T ss_pred             EcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence            999997642             233455556653222222211  01123577999988642   223344555      


Q ss_pred             ---eEEEeCCCHHHHH
Q 019694          164 ---EKFYWAPTREDRI  176 (337)
Q Consensus       164 ---d~~i~~P~~~~R~  176 (337)
                         ...+.+|...+|.
T Consensus       484 ~l~~~~i~lPpLreR~  499 (638)
T PRK11388        484 ALHAFEITIPPLRMRR  499 (638)
T ss_pred             hhceeEEeCCChhhhh
Confidence               4556668888873

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=98.44  E-value=4.6e-07  Score=92.96  Aligned_cols=133  Identities=14%  Similarity=0.206  Sum_probs=77.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH-----------hCCCcEEecCCccccCCCCChHHHHHHHHHH-------HH----
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA----   77 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~-----------l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-------A~----   77 (337)
                      ....|||+|++||||+++|++|.+.           .+.+|+.++++.+-...      +-.++|..       +.    
T Consensus       241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~  314 (538)
T PRK15424        241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGR  314 (538)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCcccccc
Confidence            3556999999999999999999876           45689999998763211      00122221       10    


Q ss_pred             -HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcch
Q 019694           78 -DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP  156 (337)
Q Consensus        78 -~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~a  156 (337)
                       .++.......||||||+.+..             .++.-|+.++++.+...+.+.  .....++-||++||..  +. .
T Consensus       315 ~Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~--L~-~  376 (538)
T PRK15424        315 AGLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD--LE-E  376 (538)
T ss_pred             CCchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC--HH-H
Confidence             011222567899999997632             234455556653322222222  1123467899999864  21 2


Q ss_pred             hccCCCce---------EEEeCCCHHHHH
Q 019694          157 LIRDGRME---------KFYWAPTREDRI  176 (337)
Q Consensus       157 LlR~gR~d---------~~i~~P~~~~R~  176 (337)
                      +...|+|.         ..+.+|...+|.
T Consensus       377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~  405 (538)
T PRK15424        377 DVRQGRFRRDLFYRLSILRLQLPPLRERV  405 (538)
T ss_pred             HHhcccchHHHHHHhcCCeecCCChhhch
Confidence            23334444         234458877763

>PF13173 AAA_14: AAA domain

Probab=98.44  E-value=8.4e-07  Score=73.90  Aligned_cols=70  Identities=14%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      .+.++|+||.|+|||++++.+++++.  -+++.++..+..........  +.+.|.+-    ....+.+||||||..+
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~   73 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL   73 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence            36789999999999999999999887  67777776643221000000  11111111    1236789999999764

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=98.44  E-value=5.8e-07  Score=91.95  Aligned_cols=132  Identities=14%  Similarity=0.156  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p   85 (337)
                      .+.-|||+|++||||+++|++|....   +.+|+.++++.+-+..      .-.++|....           ........
T Consensus       209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g  282 (509)
T PRK05022        209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG  282 (509)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence            45669999999999999999998874   4689999998763211      0012222110           01122356


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce-
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-  164 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d-  164 (337)
                      ..|||||||.+..             .++.-|+.++++.....+.+.  .....++-||+|||..-   ..+...|+|. 
T Consensus       283 GtL~ldeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f~~  344 (509)
T PRK05022        283 GTLFLDEIGELPL-------------ALQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDL---REEVRAGRFRA  344 (509)
T ss_pred             CEEEecChhhCCH-------------HHHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCH---HHHHHcCCccH
Confidence            7899999998642             223445555553221122221  12235678999998642   1222233332 


Q ss_pred             --------EEEeCCCHHHH
Q 019694          165 --------KFYWAPTREDR  175 (337)
Q Consensus       165 --------~~i~~P~~~~R  175 (337)
                              ..|.+|...+|
T Consensus       345 dL~~rl~~~~i~lPpLreR  363 (509)
T PRK05022        345 DLYHRLSVFPLSVPPLRER  363 (509)
T ss_pred             HHHhcccccEeeCCCchhc
Confidence                    33556887776

>TIGR00368 Mg chelatase-related protein

Probab=98.43  E-value=5.4e-07  Score=91.76  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ...++|.||||||||++++.++.-+
T Consensus       211 g~~vlliG~pGsGKTtlar~l~~ll  235 (499)
T TIGR00368       211 GHNLLLFGPPGSGKTMLASRLQGIL  235 (499)
T ss_pred             CCEEEEEecCCCCHHHHHHHHhccc
Confidence            4579999999999999999998743

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.42  E-value=9.8e-07  Score=74.58  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc----------------------CCCCChHHHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD   78 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~----------------------~~~Ge~~~~ir~~f~~A~~   78 (337)
                      ++|+||||+|||+++..++..+   +.+++.++......                      .+....  ........+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   79 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER   79 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence            6899999999999999998876   44555554432211                      011111  01111112223


Q ss_pred             HHHhcCceEEEecccccccc
Q 019694           79 IIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .+....|.+|+|||+..+..
T Consensus        80 ~~~~~~~~~lviDe~~~~~~   99 (165)
T cd01120          80 LRERGGDDLIILDELTRLVR   99 (165)
T ss_pred             HHhCCCCEEEEEEcHHHHHH
Confidence            34678899999999987753

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.41  E-value=5.5e-06  Score=84.77  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             HHhhhhc--CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694            8 ITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus         8 i~k~~l~--~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -++.||.  ..+....+.+||+||||||||+.++.+|+++|..+..-
T Consensus        30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew   76 (519)
T PF03215_consen   30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW   76 (519)
T ss_pred             HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence            5677776  33555667999999999999999999999999877754

>PF05729 NACHT: NACHT domain

Probab=98.40  E-value=4.1e-06  Score=71.26  Aligned_cols=145  Identities=21%  Similarity=0.236  Sum_probs=75.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCccccCCC-CChHHHHHHHHHH--------HHHHHHhc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNA-GEPAKLIRQRYRE--------AADIIKKG   83 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~l~~~~~-Ge~~~~ir~~f~~--------A~~~~~~~   83 (337)
                      +-++|+|+||+|||++++.++..+..         -++.++..+...... ..-...+...+..        ...++...
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   80 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN   80 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence            35889999999999999999877521         122333333322110 0111111111111        11233467


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      ...+|+||-+|.+......     .........+.+++.            ....+++.+|+|++... .+. +.+...-
T Consensus        81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~------------~~~~~~~~liit~r~~~-~~~-~~~~~~~  141 (166)
T PF05729_consen   81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP------------QALPPGVKLIITSRPRA-FPD-LRRRLKQ  141 (166)
T ss_pred             CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh------------hccCCCCeEEEEEcCCh-HHH-HHHhcCC
Confidence            7889999999988653321     111122233333333            11235567777776433 321 2221122


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccC
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRN  185 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~  185 (337)
                      ...+.+  -+.+++.++++.+++.
T Consensus       142 ~~~~~l~~~~~~~~~~~~~~~f~~  165 (166)
T PF05729_consen  142 AQILELEPFSEEDIKQYLRKYFSN  165 (166)
T ss_pred             CcEEEECCCCHHHHHHHHHHHhhc
Confidence            245566  4788888888888754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.39  E-value=3.2e-07  Score=75.66  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=45.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh--------CCCcEEecCCcccc--------------CCCC-ChHHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES--------------GNAG-EPAKLIRQRYREAA   77 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l--------~~~~i~vs~s~l~~--------------~~~G-e~~~~ir~~f~~A~   77 (337)
                      .+.++++||||+|||++++.+++++        ..+++.++.+...+              ...+ .+.   ..+++...
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~l~~~~~   80 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTS---DELRSLLI   80 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-H---HHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCH---HHHHHHHH
Confidence            4678999999999999999999987        66777666554321              0111 111   22333333


Q ss_pred             HHHHhcCceEEEeccccccc
Q 019694           78 DIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        78 ~~~~~~~p~Il~IDEiD~l~   97 (337)
                      +.+......+|+|||+|.+.
T Consensus        81 ~~l~~~~~~~lviDe~~~l~  100 (131)
T PF13401_consen   81 DALDRRRVVLLVIDEADHLF  100 (131)
T ss_dssp             HHHHHCTEEEEEEETTHHHH
T ss_pred             HHHHhcCCeEEEEeChHhcC
Confidence            33456666799999999864

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=98.38  E-value=1.9e-06  Score=91.26  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCC--------hHHHHHHHHHHHHHHHHhc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGE--------PAKLIRQRYREAADIIKKG   83 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge--------~~~~ir~~f~~A~~~~~~~   83 (337)
                      ...-|||+|++|||||++|++|....   +.+|+.+++..+...     ..|.        .... ...|..|       
T Consensus       398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a-------  469 (686)
T PRK15429        398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFELA-------  469 (686)
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHhc-------
Confidence            34569999999999999999998764   468999998865321     1221        1000 1223333       


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      ....|||||||.+..             .++.-|+.+++......+.+.  .....++.+|+|||..-   ..+...|+|
T Consensus       470 ~~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f  531 (686)
T PRK15429        470 DKSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDL---KKMVADREF  531 (686)
T ss_pred             CCCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCH---HHHHHcCcc
Confidence            568999999997632             223344455542211111111  12235678999997642   112222333


Q ss_pred             e---------EEEeCCCHHHHHH
Q 019694          164 E---------KFYWAPTREDRIG  177 (337)
Q Consensus       164 d---------~~i~~P~~~~R~~  177 (337)
                      .         ..|.+|...+|.+
T Consensus       532 ~~~L~~~l~~~~i~lPpLreR~~  554 (686)
T PRK15429        532 RSDLYYRLNVFPIHLPPLRERPE  554 (686)
T ss_pred             cHHHHhccCeeEEeCCChhhhHh
Confidence            2         2455688777733

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=98.38  E-value=3e-06  Score=87.46  Aligned_cols=136  Identities=21%  Similarity=0.294  Sum_probs=90.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC----------CCcEEecCCccccC----------CCCChH------HHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELESG----------NAGEPA------KLIRQRYREA   76 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~----------~~~i~vs~s~l~~~----------~~Ge~~------~~ir~~f~~A   76 (337)
                      .+.++|-||||||..++.|-+.|.          ..++.+++-.|.+.          +.|+..      ..++..|...
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~  503 (767)
T KOG1514|consen  424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP  503 (767)
T ss_pred             eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence            678999999999999999977653          46778887766442          333321      1233333322


Q ss_pred             HHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694           77 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA  155 (337)
Q Consensus        77 ~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~  155 (337)
                          + ...++||+|||+|.++++..             ..|.|++|          |.....++++||+.+|..+ ||.
T Consensus       504 ----k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPE  555 (767)
T KOG1514|consen  504 ----KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPE  555 (767)
T ss_pred             ----CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHH
Confidence                2 56789999999999987653             24445555          5566788999999999876 444


Q ss_pred             hhcc---CCC--ceEEEeC-CCHHHHHHHHHHhccCC
Q 019694          156 PLIR---DGR--MEKFYWA-PTREDRIGVCKGIFRND  186 (337)
Q Consensus       156 aLlR---~gR--~d~~i~~-P~~~~R~~Il~~~~~~~  186 (337)
                      -++=   ..|  +-+.-+. .+.++..+|+..-+...
T Consensus       556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~  592 (767)
T KOG1514|consen  556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL  592 (767)
T ss_pred             HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence            4431   112  2333333 78999999988777654

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.38  E-value=3.6e-07  Score=90.02  Aligned_cols=130  Identities=15%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH----hCCCcEEecCCccccCC-------------CCChHHHHHHHHHHHHHHHHhc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~----l~~~~i~vs~s~l~~~~-------------~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      -+.||++|++||||+++|+++...    .+.+|+.+||+.+....             .|.. ..-..+|+.|       
T Consensus       101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~-~~k~Glfe~A-------  172 (403)
T COG1221         101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQ-GGKAGLFEQA-------  172 (403)
T ss_pred             CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeeccc-CCcCchheec-------
Confidence            466999999999999999998543    36699999999764331             1210 0011344444       


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc----
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR----  159 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR----  159 (337)
                      ....||+|||-.+-.             ..+.-|+.+++.-+...+.+  .......|.+|++||.  .++.+++.    
T Consensus       173 ~GGtLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~--~l~~~~~~g~dl  235 (403)
T COG1221         173 NGGTLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTE--DLEEAVLAGADL  235 (403)
T ss_pred             CCCEEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCC--CCCcCCCceeeecccc--CHHHHHHhhcch
Confidence            667999999965422             23455667777544444444  2344678999999985  34444433    


Q ss_pred             -CCCceEEEeCCCHHHH
Q 019694          160 -DGRMEKFYWAPTREDR  175 (337)
Q Consensus       160 -~gR~d~~i~~P~~~~R  175 (337)
                       +-|....|.+|...+|
T Consensus       236 ~~rl~~~~I~LPpLrER  252 (403)
T COG1221         236 TRRLNILTITLPPLRER  252 (403)
T ss_pred             hhhhcCceecCCChhhc
Confidence             1144555666888777

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.36  E-value=5.2e-08  Score=87.83  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+|||+||||||||++|+.+..-+
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            3699999999999999999998754

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=98.35  E-value=1.4e-06  Score=89.28  Aligned_cols=135  Identities=13%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChH--------HHHHHHHHHHHHHHHhc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPA--------KLIRQRYREAADIIKKG   83 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~--------~~ir~~f~~A~~~~~~~   83 (337)
                      .+..|||+|++||||+++|++|.+..   +.+|+.++++.+-..     ..|...        ..-...|+.|       
T Consensus       234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A-------  306 (526)
T TIGR02329       234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAA-------  306 (526)
T ss_pred             CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhc-------
Confidence            35679999999999999999998754   568999999866321     111100        0001223333       


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccC-
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRD-  160 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~-  160 (337)
                      ....|||||||.+..             .++.-|+.++.+.+...+.+.  .....+|-+|+|||..-  .+.....|. 
T Consensus       307 ~gGTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l~~~v~~g~fr~d  371 (526)
T TIGR02329       307 HRGTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCALTTAVQQGRFRRD  371 (526)
T ss_pred             CCceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCHHHHhhhcchhHH
Confidence            567899999997632             233445555553322222221  11234568899887642  111111111 


Q ss_pred             --CCce-EEEeCCCHHHHH
Q 019694          161 --GRME-KFYWAPTREDRI  176 (337)
Q Consensus       161 --gR~d-~~i~~P~~~~R~  176 (337)
                        .|+. ..+.+|...+|.
T Consensus       372 L~~rL~~~~I~lPPLReR~  390 (526)
T TIGR02329       372 LFYRLSILRIALPPLRERP  390 (526)
T ss_pred             HHHhcCCcEEeCCCchhch
Confidence              1232 455668777763

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=98.35  E-value=1.1e-06  Score=93.95  Aligned_cols=135  Identities=12%  Similarity=0.131  Sum_probs=76.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC-------CcEEecCCcccc-C--CCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGELES-G--NAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~-------~~i~vs~s~l~~-~--~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      ...|||+|+||||||.+|+++++-...       ++..+....... .  ..|+        |..-.+.+......+++|
T Consensus       492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~--------~~le~GaLvlAdgGtL~I  563 (915)
T PTZ00111        492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGR--------AMIQPGAVVLANGGVCCI  563 (915)
T ss_pred             CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCc--------ccccCCcEEEcCCCeEEe
Confidence            347999999999999999999885432       222221111100 0  0010        000000111234579999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCCC-------------CCcch
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAP  156 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~a  156 (337)
                      ||+|++..             .....|++.+...+. +.-.|. ......+.-||+|+|-..             .|+++
T Consensus       564 DEidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~  629 (915)
T PTZ00111        564 DELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPS  629 (915)
T ss_pred             cchhhCCH-------------HHHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChH
Confidence            99998632             223455566653221 111222 112356789999999642             47889


Q ss_pred             hccCCCceEEEeC---CCHHHHHHHH
Q 019694          157 LIRDGRMEKFYWA---PTREDRIGVC  179 (337)
Q Consensus       157 LlR~gR~d~~i~~---P~~~~R~~Il  179 (337)
                      |+-  |||.++.+   |+.+.=..|.
T Consensus       630 LLS--RFDLIf~l~D~~d~~~D~~lA  653 (915)
T PTZ00111        630 LFT--RFDLIYLVLDHIDQDTDQLIS  653 (915)
T ss_pred             Hhh--hhcEEEEecCCCChHHHHHHH
Confidence            986  99998887   7765544443

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=98.33  E-value=7.6e-06  Score=84.01  Aligned_cols=159  Identities=15%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChH-------HHHHHHHHHHHHHHHhcCc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPA-------KLIRQRYREAADIIKKGKM   85 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~-------~~ir~~f~~A~~~~~~~~p   85 (337)
                      ..-|||+|++||||+++|+++....   +.+|+.++++.+-..     ..|...       ..-...|+.|       ..
T Consensus       227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a-------~~  299 (520)
T PRK10820        227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQA-------NG  299 (520)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhc-------CC
Confidence            3349999999999999999986654   358999999875321     111100       0001223333       56


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------CCcchhc
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI  158 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------~ld~aLl  158 (337)
                      ..|||||||.+..             .++..|++++.+.+.....+.  .....++.||+||+..-       .+.+.|.
T Consensus       300 GtL~LdeI~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~  364 (520)
T PRK10820        300 GSVLLDEIGEMSP-------------RMQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQKNLVELVQKGEFREDLY  364 (520)
T ss_pred             CEEEEeChhhCCH-------------HHHHHHHHHHhcCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence            7899999997642             223445555553221111111  11234678899887641       1223333


Q ss_pred             cCCCce-EEEeCCCHHHHH-HH---HHHhcc----C-----CCCCHHHHHHHhcC-CCch
Q 019694          159 RDGRME-KFYWAPTREDRI-GV---CKGIFR----N-----DNVADDDIVKLVDT-FPGQ  203 (337)
Q Consensus       159 R~gR~d-~~i~~P~~~~R~-~I---l~~~~~----~-----~~l~~~~la~l~~g-f~ga  203 (337)
                      .  |+. ..+.+|...+|. +|   +..++.    .     ..++.+.+..+..- |+|.
T Consensus       365 ~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGN  422 (520)
T PRK10820        365 Y--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGN  422 (520)
T ss_pred             h--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCH
Confidence            2  332 445568877764 44   222221    1     24566666666544 6663

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=98.32  E-value=7.5e-07  Score=81.40  Aligned_cols=134  Identities=14%  Similarity=0.219  Sum_probs=77.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-C----CCcEEecCCccccCCCCChHHHHH---HHHHHHHHHHHhcCceEEEecccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGEPAKLIR---QRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-~----~~~i~vs~s~l~~~~~Ge~~~~ir---~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      .+++.||||||||+-+.++|+++ |    -.++.+++|+-.      ....+|   ..|.+-.-.+..++..||++||.|
T Consensus        50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEAD  123 (333)
T KOG0991|consen   50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEAD  123 (333)
T ss_pred             ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccc
Confidence            57799999999999999999986 3    135566666422      122233   345554112225677899999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCHH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTRE  173 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~  173 (337)
                      ++...         ..|.+..+ |++..                +..-+..++|..+.|-.|+..  |+-..-+- .+..
T Consensus       124 SMT~g---------AQQAlRRt-MEiyS----------------~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~  175 (333)
T KOG0991|consen  124 SMTAG---------AQQALRRT-MEIYS----------------NTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQ  175 (333)
T ss_pred             hhhhH---------HHHHHHHH-HHHHc----------------ccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHH
Confidence            86421         11222222 22222                223577888999988888764  32222222 4455


Q ss_pred             HHHHHHHHhccCCCCCH
Q 019694          174 DRIGVCKGIFRNDNVAD  190 (337)
Q Consensus       174 ~R~~Il~~~~~~~~l~~  190 (337)
                      +...-+..+.+.+++..
T Consensus       176 qiL~Rl~~v~k~Ekv~y  192 (333)
T KOG0991|consen  176 QILKRLLEVAKAEKVNY  192 (333)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            55444555555555443

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.32  E-value=1.4e-05  Score=74.74  Aligned_cols=26  Identities=23%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ...+.|.|+|++|+|||+||+.+++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            67889999999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.1e-06  Score=90.38  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=73.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc---------cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +++.-+||.||.|+|||-||+++|..+   .-.++.++.+++.         .+|+|..+-   +.+.   +.+++..-+
T Consensus       589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g---g~Lt---eavrrrP~s  662 (898)
T KOG1051|consen  589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG---GQLT---EAVKRRPYS  662 (898)
T ss_pred             CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH---HHHH---HHHhcCCce
Confidence            367788999999999999999999987   2368888888532         235555421   1222   234677779


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      ||||||||+-        +.     .+...|++++|.-....  +.-......+++||+|+|.-.
T Consensus       663 VVLfdeIEkA--------h~-----~v~n~llq~lD~GrltD--s~Gr~Vd~kN~I~IMTsn~~~  712 (898)
T KOG1051|consen  663 VVLFEEIEKA--------HP-----DVLNILLQLLDRGRLTD--SHGREVDFKNAIFIMTSNVGS  712 (898)
T ss_pred             EEEEechhhc--------CH-----HHHHHHHHHHhcCcccc--CCCcEeeccceEEEEecccch
Confidence            9999999962        22     33445556666322111  111234567899999999744

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.31  E-value=1.5e-06  Score=84.59  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CchhHHHHHhhhhc--CCCCC-CCcEEEEEcCCCchHHHHHHHHHHHhCC-------CcEEecC----CccccCCCCChH
Q 019694            1 MDKLVVHITKNFMS--LPNIK-VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPA   66 (337)
Q Consensus         1 ~~k~~~~i~k~~l~--~~g~~-~p~giLL~GpPGtGKT~lA~aiA~~l~~-------~~i~vs~----s~l~~~~~Ge~~   66 (337)
                      ||+.+..++ ++++  ..|.. ..++++|+||||+|||++|+++++.++.       +++.++.    +.+.+...+--.
T Consensus        56 ~~~~i~~lv-~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p  134 (361)
T smart00763       56 MEEAIERFV-NYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFP  134 (361)
T ss_pred             cHHHHHHHH-HHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCC
Confidence            345555555 3443  22333 4588999999999999999999999987       8999988    554444444434


Q ss_pred             HHHHHHHHH
Q 019694           67 KLIRQRYRE   75 (337)
Q Consensus        67 ~~ir~~f~~   75 (337)
                      ..+|..|..
T Consensus       135 ~~~r~~~~~  143 (361)
T smart00763      135 DELREDLED  143 (361)
T ss_pred             HHHHHHHHH
Confidence            445555543

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PLN03210 Resistant to P

Probab=98.30  E-value=2.2e-05  Score=87.73  Aligned_cols=152  Identities=16%  Similarity=0.234  Sum_probs=82.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc---EEecCCcc---ccCCC----CCh-------HHHHHHHHH------
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGEL---ESGNA----GEP-------AKLIRQRYR------   74 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~---i~vs~s~l---~~~~~----Ge~-------~~~ir~~f~------   74 (337)
                      ...++.|.|+|++|+||||||+++++.+...|   +.+....+   ...+.    ...       ...+.++..      
T Consensus       204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~  283 (1153)
T PLN03210        204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI  283 (1153)
T ss_pred             cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence            44567899999999999999999998875433   11111000   00000    000       011111111      


Q ss_pred             ----HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           75 ----EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        75 ----~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                          ...+. -..++.+|++||+|..               .....|....+             ....+-.||+||.+.
T Consensus       284 ~~~~~~~~~-L~~krvLLVLDdv~~~---------------~~l~~L~~~~~-------------~~~~GsrIIiTTrd~  334 (1153)
T PLN03210        284 YHLGAMEER-LKHRKVLIFIDDLDDQ---------------DVLDALAGQTQ-------------WFGSGSRIIVITKDK  334 (1153)
T ss_pred             CCHHHHHHH-HhCCeEEEEEeCCCCH---------------HHHHHHHhhCc-------------cCCCCcEEEEEeCcH
Confidence                11111 1467889999998731               01111211111             012334688888875


Q ss_pred             CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-------HHHHHHhcCCCch
Q 019694          151 STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-------DDIVKLVDTFPGQ  203 (337)
Q Consensus       151 ~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-------~~la~l~~gf~ga  203 (337)
                      +     +++....++.+.+  |+.++..+++..+.-....+.       .++++.+.|.+-+
T Consensus       335 ~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA  391 (1153)
T PLN03210        335 H-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG  391 (1153)
T ss_pred             H-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence            4     4554557778887  888888888776653332221       3466667776643

syringae 6; Provisional

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=98.28  E-value=1.2e-06  Score=93.78  Aligned_cols=156  Identities=16%  Similarity=0.206  Sum_probs=100.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh-------HHHHHHHHHH-HHHHHHhcCceEEEecccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP-------AKLIRQRYRE-AADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~-------~~~ir~~f~~-A~~~~~~~~p~Il~IDEiD   94 (337)
                      .+|++||||+|||+.++++|.++|..++..+.++..+++....       ...|..-|.. ......+....||++||+|
T Consensus       359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD  438 (871)
T KOG1968|consen  359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD  438 (871)
T ss_pred             HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence            4799999999999999999999999999999998766543221       1112222200 0000112233499999999


Q ss_pred             cccc-cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc-hhccCCCceEEEeCCCH
Q 019694           95 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR  172 (337)
Q Consensus        95 ~l~~-~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~-aLlR~gR~d~~i~~P~~  172 (337)
                      .+++ .|+       ..+.+.+.                   .....+++|+|+|+.+.... ++.|.+ ++..+.-|+.
T Consensus       439 ~~~~~dRg-------~v~~l~~l-------------------~~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~  491 (871)
T KOG1968|consen  439 GMFGEDRG-------GVSKLSSL-------------------CKKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS  491 (871)
T ss_pred             cccchhhh-------hHHHHHHH-------------------HHhccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence            8775 222       11122211                   11466799999999886665 565544 6665555999


Q ss_pred             HHHHHHHHHhccCC--CCCHHHHHHHhcCCCchhhH
Q 019694          173 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       173 ~~R~~Il~~~~~~~--~l~~~~la~l~~gf~gadl~  206 (337)
                      +.+..-+..++...  .++...+.+++... |+||.
T Consensus       492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR  526 (871)
T KOG1968|consen  492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR  526 (871)
T ss_pred             HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence            99877776666544  56666776666654 55653

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.26  E-value=6.4e-07  Score=84.52  Aligned_cols=141  Identities=15%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCc---EEecCCccccCCCCChHHHHHHHHHHHHHH-----H--HhcCceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESGNAGEPAKLIRQRYREAADI-----I--KKGKMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~---i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~-----~--~~~~p~Il~I   90 (337)
                      -+.+||.||+|||||++++.+-..+.-.-   ..++.+..      .+...+....+...+-     .  ..++..|+||
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi  106 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI  106 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence            45699999999999999998877665432   12222210      1122222211110000     0  1346689999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCC---CCcchhccCCC
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS---TLYAPLIRDGR  162 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~---~ld~aLlR~gR  162 (337)
                      ||+.--.....       ..+....+|.++++.      .|+|...     .-.++.+|+++|...   .|++.|+|  .
T Consensus       107 DDlN~p~~d~y-------gtq~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~  171 (272)
T PF12775_consen  107 DDLNMPQPDKY-------GTQPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H  171 (272)
T ss_dssp             ETTT-S---TT-------S--HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred             cccCCCCCCCC-------CCcCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence            99974332222       122334556556652      3555432     235788899988532   47888886  3


Q ss_pred             ceEEEeC--CCHHHHHHHHHHhc
Q 019694          163 MEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       163 ~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                      |- .+.+  |+.+....|+..++
T Consensus       172 f~-i~~~~~p~~~sl~~If~~il  193 (272)
T PF12775_consen  172 FN-ILNIPYPSDESLNTIFSSIL  193 (272)
T ss_dssp             EE-EEE----TCCHHHHHHHHHH
T ss_pred             eE-EEEecCCChHHHHHHHHHHH
Confidence            43 4555  99988888855554

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.25  E-value=2.6e-06  Score=86.68  Aligned_cols=130  Identities=13%  Similarity=0.075  Sum_probs=72.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC----------CcEEecCC-----cc-----ccC--------CCCChHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI----------NPIMMSAG-----EL-----ESG--------NAGEPAKLIRQR   72 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~----------~~i~vs~s-----~l-----~~~--------~~Ge~~~~ir~~   72 (337)
                      ...++|.||||||||++++.++..+.-          .++.+.+.     .+     .+.        .+|.....-...
T Consensus       210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~  289 (506)
T PRK09862        210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE  289 (506)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence            457999999999999999999875431          11111111     00     000        111110000112


Q ss_pred             HHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccc-cCCCccccCCCCCceEEEEeCCCC
Q 019694           73 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV-QLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~-~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      +       ......+|||||++.+-             ..+...|++.+++.+.. .-.+. ......++.+|+|+|...
T Consensus       290 l-------~~A~gGvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~-~~~~pa~f~lIAa~NP~p  348 (506)
T PRK09862        290 I-------SLAHNGVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRA-KITYPARFQLVAAMNPSP  348 (506)
T ss_pred             h-------hhccCCEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCc-ceeccCCEEEEEeecCcc
Confidence            2       23356799999997532             13445666666532211 11111 112245789999999642


Q ss_pred             ---------------------CCcchhccCCCceEEEeC--CCHH
Q 019694          152 ---------------------TLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus       152 ---------------------~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                                           .|..+++-  |||..+++  |+.+
T Consensus       349 cG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~  391 (506)
T PRK09862        349 TGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG  391 (506)
T ss_pred             ceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence                                 47778885  99999999  4444

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=98.25  E-value=1e-05  Score=79.57  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC----------------------------------------ccccC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------------------------------ELESG   60 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s----------------------------------------~l~~~   60 (337)
                      -.|+|+.|++|||||+++|++|.-|.--.+...+.                                        .-.+.
T Consensus        38 iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDr  117 (423)
T COG1239          38 IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDR  117 (423)
T ss_pred             cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhh
Confidence            37899999999999999999999774322222110                                        00111


Q ss_pred             CCCC--hHHHHHH---HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCC-CccccCCCccc
Q 019694           61 NAGE--PAKLIRQ---RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN-PTCVQLPGMYN  134 (337)
Q Consensus        61 ~~Ge--~~~~ir~---~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~-~~~~~~~g~~~  134 (337)
                      .+|.  .++.+++   .|.-  .++-+....||+|||+-.+.            .++++ .|++.+.. .+.++..|. .
T Consensus       118 vvGslDi~ka~~~g~~af~P--GlLa~AnRGIlYvDEvnlL~------------d~lvd-~LLd~aaeG~n~vereGi-s  181 (423)
T COG1239         118 LVGSLDIEKALEEGPKAFQP--GLLARANRGILYVDEVNLLD------------DHLVD-ALLDVAAEGVNDVEREGI-S  181 (423)
T ss_pred             hccccCHHHHHhcCccccCC--cchhhccCCEEEEecccccc------------HHHHH-HHHHHHHhCCceeeeCce-e
Confidence            1221  1111111   1111  13334455799999996542            12333 33344432 244455554 1


Q ss_pred             cCCCCCceEEEEeCCCC-CCcchhccCCCceEEEeC---CCHHHHHHHHHHhccC
Q 019694          135 KEENPRVPIIVTGNDFS-TLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFRN  185 (337)
Q Consensus       135 ~~~~~~V~vI~TTN~~~-~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~~~  185 (337)
                      -....++++|+|+|-.+ .|=|.|+-  ||...+.+   .+.++|.+|...-..-
T Consensus       182 i~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f  234 (423)
T COG1239         182 IRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF  234 (423)
T ss_pred             eccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence            22346789999999654 67778875  88877777   6789999998766654

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.23  E-value=2e-05  Score=74.86  Aligned_cols=203  Identities=14%  Similarity=0.168  Sum_probs=105.4

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcc--------------ccCCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGEL--------------ESGNA   62 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l--------------~~~~~   62 (337)
                      ......++..|...-+-++||+|++|.|||++++..+....         ++++.+....-              ...+-
T Consensus        46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~  125 (302)
T PF05621_consen   46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR  125 (302)
T ss_pred             HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence            34455556666554555799999999999999999987542         34555543321              11111


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCce
Q 019694           63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP  142 (337)
Q Consensus        63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~  142 (337)
                        +...+......+..+++...+.+|+|||+..++....      ...+.+.++|..+.+               .-+++
T Consensus       126 --~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N---------------eL~ip  182 (302)
T PF05621_consen  126 --PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN---------------ELQIP  182 (302)
T ss_pred             --CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh---------------ccCCC
Confidence              1112234455556777888999999999988653221      112233333433322               23456


Q ss_pred             EEEEeCC--CC--CCcchhccCCCceEEEeC---CCHHHHHHHHH---Hhc---cCCCCCHHHHHHHhcCCCchhhHhHH
Q 019694          143 IIVTGND--FS--TLYAPLIRDGRMEKFYWA---PTREDRIGVCK---GIF---RNDNVADDDIVKLVDTFPGQSIDFFG  209 (337)
Q Consensus       143 vI~TTN~--~~--~ld~aLlR~gR~d~~i~~---P~~~~R~~Il~---~~~---~~~~l~~~~la~l~~gf~gadl~~~~  209 (337)
                      +|+....  .+  .-|+-+-+  ||+.+..-   ++.+-+ .++.   ..+   +..++...+++...-..++.-+.-+.
T Consensus       183 iV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~-~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~  259 (302)
T PF05621_consen  183 IVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFR-RLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS  259 (302)
T ss_pred             eEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHH-HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence            6665432  11  22444544  77764433   444433 3332   222   23455556666555555544443322


Q ss_pred             HHHhhhhHHHHHHHHHhhcCccchhhhhcC
Q 019694          210 ALRARVYDDEVRKWISGVGVGSIGKSLVNS  239 (337)
Q Consensus       210 alra~~~~~~i~~~i~~~~~~~~~~~~~~~  239 (337)
                      .+-......+|+     -|.|.+....++.
T Consensus       260 ~ll~~aA~~AI~-----sG~E~It~~~l~~  284 (302)
T PF05621_consen  260 RLLNAAAIAAIR-----SGEERITREILDK  284 (302)
T ss_pred             HHHHHHHHHHHh-----cCCceecHHHHhh
Confidence            222222222332     2667776655543

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.23  E-value=2.1e-06  Score=72.46  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=40.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ..-|||+|+|||||+++|+++....+.   +|+.+++..+-           .+.+..       .....|||+|||.+.
T Consensus        21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~-------a~~gtL~l~~i~~L~   82 (138)
T PF14532_consen   21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQ-------AKGGTLYLKNIDRLS   82 (138)
T ss_dssp             SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHH-------CTTSEEEEECGCCS-
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHH-------cCCCEEEECChHHCC
Confidence            445899999999999999999887653   44444444321           233333       378899999999764

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.23  E-value=1.2e-05  Score=69.59  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=25.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.+.-|+++|+||+|||+++.-++..+.
T Consensus         2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           2 IKMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CCcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            35567799999999999999999998774

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.22  E-value=2e-05  Score=72.66  Aligned_cols=141  Identities=15%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ..-.|-.++||+|||||..++.+|+.+|..++..++++-.      ....+.++|.-+    - ...+-+.|||++.+-.
T Consensus        30 ~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~----~-~~GaW~cfdefnrl~~   98 (231)
T PF12774_consen   30 SLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL----A-QSGAWLCFDEFNRLSE   98 (231)
T ss_dssp             CTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH----H-HHT-EEEEETCCCSSH
T ss_pred             ccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH----h-hcCchhhhhhhhhhhH
Confidence            3456778999999999999999999999999999998643      235556666554    2 2357899999997642


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCH
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .     .-.+..+.+......+..+...+.+.|... .-....-+.+|.|    ....||+.|..-   =+.+.+  ||.
T Consensus        99 ~-----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~l---FRpvam~~PD~  169 (231)
T PF12774_consen   99 E-----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKAL---FRPVAMMVPDL  169 (231)
T ss_dssp             H-----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCTT---EEEEE--S--H
T ss_pred             H-----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHHH---hheeEEeCCCH
Confidence            1     122333334433333344444444444311 1233455666777    345789888753   334444  988


Q ss_pred             HHHHHHH
Q 019694          173 EDRIGVC  179 (337)
Q Consensus       173 ~~R~~Il  179 (337)
                      ....+++
T Consensus       170 ~~I~ei~  176 (231)
T PF12774_consen  170 SLIAEIL  176 (231)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777765

>PRK15115 response regulator GlrR; Provisional

Probab=98.18  E-value=3.8e-06  Score=83.97  Aligned_cols=132  Identities=15%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~   86 (337)
                      ...++|+|++|||||++|+++....   +.+|+.+++..+....      .-..+|..+.           .........
T Consensus       157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g  230 (444)
T PRK15115        157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG  230 (444)
T ss_pred             CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence            3458999999999999999998765   4689999988653211      1112332210           011233567


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc---
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM---  163 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~---  163 (337)
                      .|||||||.+..             ..+..|+..+++.....+.+.  .....++.+|+||+..  ++. ++..|+|   
T Consensus       231 tl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~  292 (444)
T PRK15115        231 TLFLDEIGDMPA-------------PLQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED  292 (444)
T ss_pred             EEEEEccccCCH-------------HHHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence            899999997643             223445555553222111111  1123477899999853  443 3445666   


Q ss_pred             ------eEEEeCCCHHHHH
Q 019694          164 ------EKFYWAPTREDRI  176 (337)
Q Consensus       164 ------d~~i~~P~~~~R~  176 (337)
                            ...+.+|...+|.
T Consensus       293 l~~~l~~~~i~lPpLr~R~  311 (444)
T PRK15115        293 LYYRLNVVSLKIPALAERT  311 (444)
T ss_pred             HHHhhceeeecCCChHhcc
Confidence                  4455668888873

>PHA02624 large T antigen; Provisional

Probab=98.18  E-value=1.1e-05  Score=83.06  Aligned_cols=139  Identities=14%  Similarity=0.087  Sum_probs=79.8

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|++..+.+||+||||||||+++.++++.++-..+.++++.-.            ..|...    -...--+++|||+-
T Consensus       425 l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k------------s~FwL~----pl~D~~~~l~dD~t  488 (647)
T PHA02624        425 VENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK------------LNFELG----CAIDQFMVVFEDVK  488 (647)
T ss_pred             HhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch------------hHHHhh----hhhhceEEEeeecc
Confidence            34666667999999999999999999999996666777654211            122222    22334588999985


Q ss_pred             cccccCC--CCcccchhhHhHH--HHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCCCCcchhccCCCceEEEeC
Q 019694           95 AGAGRMG--GTTQYTVNNQMVN--ATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA  169 (337)
Q Consensus        95 ~l~~~~~--~~~~~~~~~~~v~--~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~  169 (337)
                      .-+....  ...+      -+.  .-|.+.+|.--.|+++-.... ....=-|.|+|||.. .||.-+.-  ||-+.+.+
T Consensus       489 ~~~~~~~~Lp~G~------~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F  559 (647)
T PHA02624        489 GQPADNKDLPSGQ------GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDF  559 (647)
T ss_pred             ccccccccCCccc------ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccc
Confidence            3332110  0001      111  334555662212222221111 111123899999975 47777764  88888887


Q ss_pred             -CCHHHHHHH
Q 019694          170 -PTREDRIGV  178 (337)
Q Consensus       170 -P~~~~R~~I  178 (337)
                       |..--+..+
T Consensus       560 ~~k~~l~~sL  569 (647)
T PHA02624        560 KPKPYLKKSL  569 (647)
T ss_pred             cccHHHHHHH
Confidence             665554443

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.18  E-value=1.6e-05  Score=66.25  Aligned_cols=43  Identities=33%  Similarity=0.600  Sum_probs=37.1

Q ss_pred             hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694            3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus         3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++...++.++..+.-+.|+-+-|+|+||||||++++.||+.+
T Consensus        35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            3566777888887777888999999999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.13  E-value=2.3e-06  Score=82.99  Aligned_cols=135  Identities=19%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~-----l---------~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ...|||.|.||||||.|.+.+++-....+ .+++..     |         ..+|.-+.+     .+-.|       ...
T Consensus        57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaG-----alvla-------d~G  123 (331)
T PF00493_consen   57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAG-----ALVLA-------DGG  123 (331)
T ss_dssp             S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE------HHHHC-------TTS
T ss_pred             ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCC-----chhcc-------cCc
Confidence            45799999999999999998865443333 332222     1         111222221     22222       668


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCCC-------------C
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------T  152 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~  152 (337)
                      |++|||+|++-..             ....|.+.++.++ .+.-.|. ......+.-|++++|-..             .
T Consensus       124 iccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~  189 (331)
T PF00493_consen  124 ICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN  189 (331)
T ss_dssp             EEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred             eeeecccccccch-------------HHHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence            9999999986321             1234555555332 1111121 112356778999999665             4


Q ss_pred             CcchhccCCCceEEEeC---CCHHHHHHHHHHhcc
Q 019694          153 LYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFR  184 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~---P~~~~R~~Il~~~~~  184 (337)
                      ++++|+.  |||.++.+   |+.+.-..|...++.
T Consensus       190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~  222 (331)
T PF00493_consen  190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD  222 (331)
T ss_dssp             S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred             cchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence            8889986  99999887   776666666555554

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.12  E-value=2e-05  Score=70.81  Aligned_cols=83  Identities=13%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC--------CCCC-----------hHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG--------NAGE-----------PAKLIRQRY   73 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~--------~~Ge-----------~~~~ir~~f   73 (337)
                      .|++....++++||||+|||+++..++...   +...+.++..++...        +.+.           ........+
T Consensus         7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237         7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence            577888899999999999999999887643   556777776541000        0000           000011123


Q ss_pred             HHHHHHHHhcCceEEEecccccccc
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ....+++.+..+.+|+||-|.++..
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~l~~  111 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTALYR  111 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHHHhH
Confidence            3333444566899999999998763

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.12  E-value=2.4e-06  Score=69.71  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=27.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      |+|.||||+||||+|+.+|+.+|++++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            7899999999999999999999988776654

...

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.12  E-value=5.7e-05  Score=67.66  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ....++|+||.|+|||+|++.+.+.+
T Consensus        19 ~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   19 PSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            45789999999999999999999988

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PHA02774 E1; Provisional

Probab=98.11  E-value=1.6e-05  Score=81.46  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE-ecCCccccCCCCChHHHHHHHHHHHHHHHHhc
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKG   83 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~-vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~   83 (337)
                      +...+|+++  .+++....++||||||||||++|-++++.++-..+. ++..   +.+-          +..+      .
T Consensus       420 fl~~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~Fw----------Lqpl------~  478 (613)
T PHA02774        420 FLTALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHFW----------LQPL------A  478 (613)
T ss_pred             HHHHHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---cccc----------cchh------c
Confidence            344566665  344444589999999999999999999998755443 4431   1110          1111      1


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc-cCCCCCceEEEEeCCCCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .-.|++|||+-.         .   ....+...|.+++|.- .+.++-... ......-|+|+|||---.-+
T Consensus       479 d~ki~vlDD~t~---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~  537 (613)
T PHA02774        479 DAKIALLDDATH---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAE  537 (613)
T ss_pred             cCCEEEEecCcc---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccc
Confidence            224899999811         0   1234455677888832 233332211 12234569999999443333

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=0.00011  Score=73.21  Aligned_cols=170  Identities=17%  Similarity=0.185  Sum_probs=105.5

Q ss_pred             HHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCcccc--------------CCCCCh
Q 019694            6 VHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELES--------------GNAGEP   65 (337)
Q Consensus         6 ~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~--------------~~~Ge~   65 (337)
                      ..++++|+. ......+..+.+.|-||||||.+..-+-..+.     ...+++++.++-.              ...+.+
T Consensus       159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~  238 (529)
T KOG2227|consen  159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG  238 (529)
T ss_pred             HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence            467778876 34567788899999999999998887655442     2345666654311              111221


Q ss_pred             -HHHHHHHHHHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           66 -AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        66 -~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                       +......|..   -.. ...|-++++||+|.++.+.. ..        + -+|             -.|..-...++++
T Consensus       239 ~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~-~v--------L-y~l-------------Fewp~lp~sr~iL  292 (529)
T KOG2227|consen  239 TGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ-TV--------L-YTL-------------FEWPKLPNSRIIL  292 (529)
T ss_pred             hhHHHHHHHHH---HHhcccceEEEEechhhHHhhccc-ce--------e-eee-------------hhcccCCcceeee
Confidence             1111222222   112 23588999999999885443 11        1 111             1456677889999


Q ss_pred             EEEeCCCCCCcchhccCCCce-----EEEeC--CCHHHHHHHHHHhccCCCCCH------HHHHHHhcCCCc
Q 019694          144 IVTGNDFSTLYAPLIRDGRME-----KFYWA--PTREDRIGVCKGIFRNDNVAD------DDIVKLVDTFPG  202 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d-----~~i~~--P~~~~R~~Il~~~~~~~~l~~------~~la~l~~gf~g  202 (337)
                      |+.+|..+.=|..|.|- +.|     +.+.+  .+.++..+|++.-+.......      +-.|+.+.+-+|
T Consensus       293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG  363 (529)
T KOG2227|consen  293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG  363 (529)
T ss_pred             eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence            99999998777766531 221     23333  789999999988887654332      445666666665

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=98.08  E-value=9.1e-06  Score=81.92  Aligned_cols=134  Identities=13%  Similarity=0.165  Sum_probs=77.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p   85 (337)
                      ....+|++|++|||||++|+++....   +.+|+.++++.+...      ..-..+|....           ..+.....
T Consensus       160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~  233 (469)
T PRK10923        160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADG  233 (469)
T ss_pred             cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence            34569999999999999999998875   468999999876221      11122332110           00112246


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhc
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI  158 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLl  158 (337)
                      ..|||||||.+..             .++..|+.++++.+....++.  .....++.||+||+..       ..+.+.|.
T Consensus       234 Gtl~l~~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~  298 (469)
T PRK10923        234 GTLFLDEIGDMPL-------------DVQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLF  298 (469)
T ss_pred             CEEEEeccccCCH-------------HHHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence            6899999997642             223445555553322222222  1123467899998753       13334444


Q ss_pred             cCCCc-eEEEeCCCHHHHH
Q 019694          159 RDGRM-EKFYWAPTREDRI  176 (337)
Q Consensus       159 R~gR~-d~~i~~P~~~~R~  176 (337)
                      .  |+ ...+.+|...+|.
T Consensus       299 ~--~l~~~~i~~PpLreR~  315 (469)
T PRK10923        299 H--RLNVIRVHLPPLRERR  315 (469)
T ss_pred             H--HhcceeecCCCcccch
Confidence            3  44 3556667766653

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.08  E-value=4.1e-05  Score=67.01  Aligned_cols=32  Identities=19%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      +|++||||||||+++..++.+.   |.+++.++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            7899999999999999876643   5566666543

A related protein is found in archaea.

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=98.06  E-value=2.1e-05  Score=78.83  Aligned_cols=131  Identities=15%  Similarity=0.233  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~   86 (337)
                      ...+|++|++||||+++|+++....   +.+|+.+++..+...      ..-..+|....           .........
T Consensus       166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g  239 (457)
T PRK11361        166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG  239 (457)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence            4569999999999999999997764   468999998866321      11112222110           011223467


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce--
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME--  164 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d--  164 (337)
                      +|||||||.+..             .++..|+.++++......++.  .....++.||+|||..-   ..+.+.|+|.  
T Consensus       240 tl~ld~i~~l~~-------------~~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~  301 (457)
T PRK11361        240 TLLLDEIGEMPL-------------VLQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED  301 (457)
T ss_pred             EEEEechhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence            899999997642             223445556553221111221  11234678999998531   1334445543  


Q ss_pred             -------EEEeCCCHHHH
Q 019694          165 -------KFYWAPTREDR  175 (337)
Q Consensus       165 -------~~i~~P~~~~R  175 (337)
                             ..+.+|...+|
T Consensus       302 l~~~l~~~~i~~ppLreR  319 (457)
T PRK11361        302 LFYRLNVIHLILPPLRDR  319 (457)
T ss_pred             HHHHhccceecCCChhhc
Confidence                   23444777766

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=98.05  E-value=4.2e-06  Score=84.51  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc-----ccCCCCChHHHHHHHHHHHHH-----HHHhc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKLIRQRYREAAD-----IIKKG   83 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l-----~~~~~Ge~~~~ir~~f~~A~~-----~~~~~   83 (337)
                      ..+.+..|||.|++||||..+|++|-+..   +-+|+.++|+-+     .|..+|-.    ...|.-|..     +....
T Consensus       264 ~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye----~GAFTGA~~~GK~GlfE~A  339 (560)
T COG3829         264 IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE----KGAFTGASKGGKPGLFELA  339 (560)
T ss_pred             hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC----CccccccccCCCCcceeec
Confidence            45678889999999999999999997765   469999999864     23323221    122333300     00001


Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      ...-||+|||-.+-             ..++.-|+.++..-+...+.|.  ....-+|-||+|||+.  + ..++..|+|
T Consensus       340 ~gGTLFLDEIgemp-------------l~LQaKLLRVLQEkei~rvG~t--~~~~vDVRIIAATN~n--L-~~~i~~G~F  401 (560)
T COG3829         340 NGGTLFLDEIGEMP-------------LPLQAKLLRVLQEKEIERVGGT--KPIPVDVRIIAATNRN--L-EKMIAEGTF  401 (560)
T ss_pred             cCCeEEehhhccCC-------------HHHHHHHHHHHhhceEEecCCC--CceeeEEEEEeccCcC--H-HHHHhcCcc
Confidence            44679999995432             2445556666665444444443  2234578999999973  1 223445554

>PHA00729 NTP-binding motif containing protein

Probab=98.03  E-value=6.6e-06  Score=75.41  Aligned_cols=27  Identities=22%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ..|+|+|+||||||+||.+++++++..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~~~   44 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVFWK   44 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            479999999999999999999998643

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.02  E-value=6.3e-06  Score=71.17  Aligned_cols=34  Identities=24%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .+|..|+|+|+||||||++|+.+|+.++.+++..
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~   35 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT   35 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            4577899999999999999999999999887743

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=97.99  E-value=1.8e-05  Score=74.77  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=60.0

Q ss_pred             hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCC----hHHHH----HHHHH
Q 019694            3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE----PAKLI----RQRYR   74 (337)
Q Consensus         3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge----~~~~i----r~~f~   74 (337)
                      .++++.+|.|+..+.-+.|.-+-|||+|||||++.++.||+.+-..-   ..|.+...|++.    .++.|    .++-.
T Consensus        92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP~~~~ie~Yk~eL~~  168 (344)
T KOG2170|consen   92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFPHASKIEDYKEELKN  168 (344)
T ss_pred             HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCCChHHHHHHHHHHHH
Confidence            45677788888888888899999999999999999999999762110   001111111111    01111    12223


Q ss_pred             HHHHHHHhcCceEEEeccccccc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      +..+.+...+.+|.++||+|++-
T Consensus       169 ~v~~~v~~C~rslFIFDE~DKmp  191 (344)
T KOG2170|consen  169 RVRGTVQACQRSLFIFDEVDKLP  191 (344)
T ss_pred             HHHHHHHhcCCceEEechhhhcC
Confidence            33344468889999999999863

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.99  E-value=1.5e-05  Score=78.46  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCC-----C-cEEecCCc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI   79 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~-----~-~i~vs~s~---------------l~~~~~Ge~~~~ir---~~f~~A~~~   79 (337)
                      .||.||||+|||+|++.|++....     . ++.+...-               +.+.+-..+...++   .....|...
T Consensus       172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~  251 (416)
T PRK09376        172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL  251 (416)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            688899999999999999987643     2 22332221               23334344444444   455556555


Q ss_pred             HHhcCceEEEeccccccc
Q 019694           80 IKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~   97 (337)
                      ...++..+||||||..+.
T Consensus       252 ~e~G~dVlL~iDsItR~a  269 (416)
T PRK09376        252 VEHGKDVVILLDSITRLA  269 (416)
T ss_pred             HHcCCCEEEEEEChHHHH
Confidence            557889999999998765

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=97.98  E-value=1.4e-05  Score=80.30  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc-----ccCCCCChH-------HHHHHHHHHHHHHHHhcC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL-----ESGNAGEPA-------KLIRQRYREAADIIKKGK   84 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l-----~~~~~Ge~~-------~~ir~~f~~A~~~~~~~~   84 (337)
                      ...-||++|++||||-.+|++|-+...   -||+.++++.+     .+..+|...       ..-...|+.|       .
T Consensus       163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A-------~  235 (464)
T COG2204         163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA-------N  235 (464)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc-------C
Confidence            345699999999999999999977654   59999999865     222333110       0001244444       6


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND  149 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~  149 (337)
                      ...||||||..+.-             .++.-|+.++...+...+.|.  ..-.-+|-||++||.
T Consensus       236 GGTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~  285 (464)
T COG2204         236 GGTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNR  285 (464)
T ss_pred             CceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCc
Confidence            77899999975431             223334444443322233332  122457889999996

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.96  E-value=9e-06  Score=68.09  Aligned_cols=33  Identities=24%  Similarity=0.472  Sum_probs=27.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |++.||||+||||+|+.+++.++  ...++...+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~   34 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR   34 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence            78999999999999999999999  4445555543

...

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.96  E-value=0.00032  Score=65.88  Aligned_cols=144  Identities=19%  Similarity=0.353  Sum_probs=87.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-C--CCcEEecCCc-------------ccc--------CCCCChHH-HHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-G--INPIMMSAGE-------------LES--------GNAGEPAK-LIRQRYREAA   77 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-~--~~~i~vs~s~-------------l~~--------~~~Ge~~~-~ir~~f~~A~   77 (337)
                      .+|+|||+|+||.|.+-++-+++ |  ++-..+...+             +.+        ...|...+ .|.++.++.+
T Consensus        36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA  115 (351)
T KOG2035|consen   36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA  115 (351)
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence            68999999999999999998876 3  2111111111             111        13444433 3445555543


Q ss_pred             HHHH-----hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC
Q 019694           78 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST  152 (337)
Q Consensus        78 ~~~~-----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~  152 (337)
                      +...     +..-.||+|.|.|.+....    |.     .+..|.    .             .-.+.+-+|..+|..+.
T Consensus       116 Qt~qie~~~qr~fKvvvi~ead~LT~dA----Q~-----aLRRTM----E-------------kYs~~~RlIl~cns~Sr  169 (351)
T KOG2035|consen  116 QTQQIETQGQRPFKVVVINEADELTRDA----QH-----ALRRTM----E-------------KYSSNCRLILVCNSTSR  169 (351)
T ss_pred             hhcchhhccccceEEEEEechHhhhHHH----HH-----HHHHHH----H-------------HHhcCceEEEEecCccc
Confidence            2111     2234689999999874321    11     111111    1             23456789999999999


Q ss_pred             CcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCH-HHHHH
Q 019694          153 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-DDIVK  195 (337)
Q Consensus       153 ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~-~~la~  195 (337)
                      +-+|+..  |+- .+.+  |+.++...++...+.++++.. +++++
T Consensus       170 iIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~  212 (351)
T KOG2035|consen  170 IIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK  212 (351)
T ss_pred             chhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence            9999875  422 2333  999999999999998886654 44433

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=97.96  E-value=3.2e-05  Score=77.42  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~   86 (337)
                      ...++|+|++||||+++|+++....   +.+|+.++++.+...      ..-..+|...           .+.+......
T Consensus       162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g  235 (445)
T TIGR02915       162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG  235 (445)
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence            4568999999999999999997765   458999998865221      1111223211           0011223567


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhcc
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR  159 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLlR  159 (337)
                      .|||||||.+..             .++..|+.++.......+.+.  .....++.+|+||+..       ..+.+.|..
T Consensus       236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~  300 (445)
T TIGR02915       236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY  300 (445)
T ss_pred             EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence            899999997642             233445555542211111111  1123467888988764       222333321


Q ss_pred             CCCce-EEEeCCCHHHHHH
Q 019694          160 DGRME-KFYWAPTREDRIG  177 (337)
Q Consensus       160 ~gR~d-~~i~~P~~~~R~~  177 (337)
                        |+. ..+.+|...+|.+
T Consensus       301 --~l~~~~i~lPpLr~R~~  317 (445)
T TIGR02915       301 --RIAEISITIPPLRSRDG  317 (445)
T ss_pred             --HhccceecCCCchhchh
Confidence              222 3455588777743

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.95  E-value=4.3e-05  Score=77.29  Aligned_cols=45  Identities=27%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             HHhhhhc-----CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694            8 ITKNFMS-----LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus         8 i~k~~l~-----~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      -++.||+     .++.+ -+.+||+||+||||||.++.+++++|+.++.-+
T Consensus        93 eVk~WL~~~~~~~~~l~-~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen   93 EVKQWLKQVAEFTPKLG-SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             HHHHHHHHHHHhccCCC-ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            4567777     34432 468999999999999999999999999887665

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=97.94  E-value=8.8e-06  Score=76.72  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA   77 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~   77 (337)
                      .-+++||.||||||||.||-++++++|  +||..+.+|++.+..+-.++-+ -+-|++|.
T Consensus        63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI  121 (456)
T KOG1942|consen   63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI  121 (456)
T ss_pred             cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence            357999999999999999999999996  6899999999988877776544 46677774

>PRK08118 topology modulation protein; Reviewed

Probab=97.94  E-value=3e-05  Score=67.82  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      +-|++.||||+||||+|+.+++.++++++.++.-
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l   35 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL   35 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence            3589999999999999999999999998877643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.93  E-value=5.3e-06  Score=72.79  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      |+|+|+||+||||+++.+.+++
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            7899999999999999999888

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.93  E-value=2.8e-05  Score=70.78  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .|++....++++||||+|||++|..+|.+.   +...+.++..
T Consensus        18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            577778889999999999999999998744   6667777665

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.90  E-value=2.7e-05  Score=68.26  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=29.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      .+.|+|.|+||+||||+|+.++++++..++.++..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D   36 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD   36 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence            35799999999999999999999988777655544

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.89  E-value=3.8e-05  Score=71.60  Aligned_cols=78  Identities=14%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCC---c-------c-----ccCCCCChHHHH---HHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLI---RQRYRE   75 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s---~-------l-----~~~~~Ge~~~~i---r~~f~~   75 (337)
                      ...-++|.||+|+|||+|++.+++.+...      ++.+...   +       +     .+.+-..+...+   ......
T Consensus        15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~   94 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK   94 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            34568899999999999999999987542      2232222   1       1     222222222222   244444


Q ss_pred             HHHHHHhcCceEEEeccccccc
Q 019694           76 AADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        76 A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      |......++..+|||||+..+.
T Consensus        95 a~~~~~~G~~vll~iDei~r~a  116 (249)
T cd01128          95 AKRLVEHGKDVVILLDSITRLA  116 (249)
T ss_pred             HHHHHHCCCCEEEEEECHHHhh
Confidence            5444446889999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK07261 topology modulation protein; Provisional

Probab=97.89  E-value=3.6e-05  Score=67.54  Aligned_cols=42  Identities=14%  Similarity=0.140  Sum_probs=32.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE   64 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge   64 (337)
                      -|++.|+||+||||||+.++..++.+.+..+.-.....+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~   43 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQER   43 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccC
Confidence            378999999999999999999999988776544333334333

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=97.89  E-value=7e-06  Score=82.50  Aligned_cols=132  Identities=13%  Similarity=0.177  Sum_probs=73.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHH-------H----HHHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~-------A----~~~~~~~~p   85 (337)
                      .+..+++.|++||||+++|+++....   +.+|+.++++.+.+.+.      -..+|..       +    .+.......
T Consensus       156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~  229 (463)
T TIGR01818       156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADG  229 (463)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence            34568999999999999999998764   46899999886522110      1112221       1    001123356


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce-
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-  164 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d-  164 (337)
                      ..|||||||.+..             .++..|+++++........+.  .....++.||+|||..-   ..+++.|+|. 
T Consensus       230 gtl~l~ei~~l~~-------------~~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l---~~~~~~~~f~~  291 (463)
T TIGR01818       230 GTLFLDEIGDMPL-------------DAQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNL---EALVRQGKFRE  291 (463)
T ss_pred             CeEEEEchhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCH---HHHHHcCCcHH
Confidence            7899999997642             123445555552211111111  11233567888887542   1223334443 


Q ss_pred             --------EEEeCCCHHHH
Q 019694          165 --------KFYWAPTREDR  175 (337)
Q Consensus       165 --------~~i~~P~~~~R  175 (337)
                              ..+.+|...+|
T Consensus       292 ~L~~rl~~~~i~lPpLr~R  310 (463)
T TIGR01818       292 DLFHRLNVIRIHLPPLRER  310 (463)
T ss_pred             HHHHHhCcceecCCCcccc
Confidence                    35666776655

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.88  E-value=0.00013  Score=73.69  Aligned_cols=79  Identities=20%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC------CCC--------hHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAAD   78 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~------~Ge--------~~~~ir~~f~~A~~   78 (337)
                      .|+.+...+||+|+||+|||+|+..+|...   +..++.++..+-....      .|.        .+..+..++    +
T Consensus        75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~  150 (446)
T PRK11823         75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----A  150 (446)
T ss_pred             CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----H
Confidence            377888889999999999999999998765   5667777765321110      010        001112222    3


Q ss_pred             HHHhcCceEEEecccccccc
Q 019694           79 IIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .++...|.+|+||+|-.+..
T Consensus       151 ~i~~~~~~lVVIDSIq~l~~  170 (446)
T PRK11823        151 TIEEEKPDLVVIDSIQTMYS  170 (446)
T ss_pred             HHHhhCCCEEEEechhhhcc
Confidence            33667899999999987753

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=97.88  E-value=5.2e-05  Score=72.09  Aligned_cols=120  Identities=13%  Similarity=0.034  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--------EecCCcc--ccCCCCC----hHHHHHHHHHHHHHHHHh
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGEL--ESGNAGE----PAKLIRQRYREAADIIKK   82 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--------~vs~s~l--~~~~~Ge----~~~~ir~~f~~A~~~~~~   82 (337)
                      .-+.|.+.||+||+|+||+.+|.++|+.+-..--        .-+-+++  ... .|.    +...+|++-+.+...-..
T Consensus        15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p-~~~~~~I~idqiR~l~~~~~~~p~e   93 (290)
T PRK05917         15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSP-QGKGRLHSIETPRAIKKQIWIHPYE   93 (290)
T ss_pred             cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEec-CCCCCcCcHHHHHHHHHHHhhCccC
Confidence            3477899999999999999999999998743210        0001111  000 111    233455554444111124


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR  162 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR  162 (337)
                      +.-.|++||++|.+...             ....|+..++             ++..++.+|..|+.++.|.|.++.  |
T Consensus        94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--R  145 (290)
T PRK05917         94 SPYKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--R  145 (290)
T ss_pred             CCceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--c
Confidence            55679999999976421             1234444555             567788999999999999999875  4


Q ss_pred             ceE
Q 019694          163 MEK  165 (337)
Q Consensus       163 ~d~  165 (337)
                      +-.
T Consensus       146 cq~  148 (290)
T PRK05917        146 SLS  148 (290)
T ss_pred             ceE
Confidence            444

>TIGR02012 tigrfam_recA protein RecA

Probab=97.88  E-value=5e-05  Score=73.24  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=54.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge--------~~~~ir~~f~~A~~~~   80 (337)
                      .|++.-..++|+||||||||+||..++.+.   |...+.++..+-.+.    ..|-        ......+.+..+..++
T Consensus        50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li  129 (321)
T TIGR02012        50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV  129 (321)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence            477777889999999999999988765543   556666654331110    0010        0011233444555566


Q ss_pred             HhcCceEEEeccccccccc
Q 019694           81 KKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~   99 (337)
                      +...+.+|+||-+-++..+
T Consensus       130 ~~~~~~lIVIDSv~al~~~  148 (321)
T TIGR02012       130 RSGAVDIIVVDSVAALVPK  148 (321)
T ss_pred             hccCCcEEEEcchhhhccc
Confidence            7889999999999887754

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.87  E-value=7.3e-05  Score=72.16  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=27.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ..+|+|+.|||+-|+|||+|.-.....+..+
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~   92 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGE   92 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence            4588999999999999999999999887653

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=97.86  E-value=2.3e-05  Score=74.55  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=76.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCCccccCCCCChHHHHHHHHHHHHH-HHHh--cCceEEEeccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD-IIKK--GKMCCLMINDL   93 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~-~~~~--~~p~Il~IDEi   93 (337)
                      .+|+|||||||||+...++|..+-.+      +..++.|+-.+-  +-. +.-...|..+.. .+-+  ..+..+++||.
T Consensus        64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgi--d~v-r~qi~~fast~~~~~fst~~~fKlvILDEA  140 (360)
T KOG0990|consen   64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGI--DPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEA  140 (360)
T ss_pred             cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCC--cch-HHHHHHHHhhccceeccccCceeEEEecch
Confidence            89999999999999999999987542      112233321111  111 111134444411 0012  37889999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-CCH
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR  172 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-P~~  172 (337)
                      |++.....             ..|...+.             ....++-++..+|.+..+.||++.  ||.++-+- -+.
T Consensus       141 DaMT~~AQ-------------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~  192 (360)
T KOG0990|consen  141 DAMTRDAQ-------------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM  192 (360)
T ss_pred             hHhhHHHH-------------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence            98743211             11111111             223455677889999999999874  66665444 334


Q ss_pred             HHHHHHHHHhccCC
Q 019694          173 EDRIGVCKGIFRND  186 (337)
Q Consensus       173 ~~R~~Il~~~~~~~  186 (337)
                      +.-..++..+...+
T Consensus       193 ~~~~~r~shi~e~e  206 (360)
T KOG0990|consen  193 AQQTERQSHIRESE  206 (360)
T ss_pred             hhhhhHHHHHHhcc
Confidence            44455555555544

>PRK13947 shikimate kinase; Provisional

Probab=97.84  E-value=5.9e-05  Score=65.39  Aligned_cols=41  Identities=17%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP   65 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~   65 (337)
                      .|+|.|+||||||++++.+|+.+|++|+..+  .+.....|.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~   43 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT   43 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence            4899999999999999999999999987554  3444444544

>PRK06762 hypothetical protein; Provisional

Probab=97.83  E-value=2.8e-05  Score=67.26  Aligned_cols=38  Identities=18%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |..|+|.|+||+||||+|+.+++.++..++.++...+.
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r   39 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR   39 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence            67899999999999999999999997667677665554

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.81  E-value=2.5e-05  Score=71.43  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      .|.-+|+||+||+|||++|+.++
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcC
Confidence            36779999999999999999986

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.80  E-value=0.00021  Score=70.38  Aligned_cols=78  Identities=19%  Similarity=0.152  Sum_probs=50.4

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------CCCC--------hHHHHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI   79 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------~~Ge--------~~~~ir~~f~~A~~~   79 (337)
                      |+.+...+||+|+||+|||+|+..+|..+   +.+++.++..+-...      ..|.        .+..+..+++    .
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~  153 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----S  153 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----H
Confidence            67777889999999999999999988764   345666665431110      0010        0111222333    3


Q ss_pred             HHhcCceEEEecccccccc
Q 019694           80 IKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+|.+|+||+|..+..
T Consensus       154 i~~~~~~lVVIDSIq~l~~  172 (372)
T cd01121         154 IEELKPDLVIIDSIQTVYS  172 (372)
T ss_pred             HHhcCCcEEEEcchHHhhc
Confidence            3677999999999987753

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=97.79  E-value=0.00059  Score=70.95  Aligned_cols=143  Identities=10%  Similarity=0.002  Sum_probs=80.9

Q ss_pred             HhhhhcCCCCCC-C-cEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH-----HHH
Q 019694            9 TKNFMSLPNIKV-P-LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADI   79 (337)
Q Consensus         9 ~k~~l~~~g~~~-p-~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----~~~   79 (337)
                      +|.-|.+.-+.| - .||||.|++|||||+++++++.-+..  +|+.+..+-=.+..+|..  -|.......     -.+
T Consensus        11 ~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGl   88 (584)
T PRK13406         11 AALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGL   88 (584)
T ss_pred             HHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCc
Confidence            344444444554 2 68999999999999999999998754  777665554344444432  011111110     011


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceEEEEeCCC---CCCcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDF---STLYA  155 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~vI~TTN~~---~~ld~  155 (337)
                      +......|||+||+..+-.             -+...|++-++.-. .++-+|. ......+.++|+|-|..   ..|++
T Consensus        89 la~Ah~GvL~lDe~n~~~~-------------~~~~aLleame~G~vtIeR~G~-s~~~Pa~F~LIat~~~~~~~~~L~~  154 (584)
T PRK13406         89 LAEADGGVLVLAMAERLEP-------------GTAARLAAALDTGEVRLERDGL-ALRLPARFGLVALDEGAEEDERAPA  154 (584)
T ss_pred             eeeccCCEEEecCcccCCH-------------HHHHHHHHHHhCCcEEEEECCc-EEecCCCcEEEecCCChhcccCCCH
Confidence            1222457999999964321             23345555555211 1111222 01123456777764322   45899


Q ss_pred             hhccCCCceEEEeC
Q 019694          156 PLIRDGRMEKFYWA  169 (337)
Q Consensus       156 aLlR~gR~d~~i~~  169 (337)
                      +++-  ||+..+.+
T Consensus       155 ~lLD--Rf~l~v~v  166 (584)
T PRK13406        155 ALAD--RLAFHLDL  166 (584)
T ss_pred             HhHh--heEEEEEc
Confidence            9985  99999999

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.78  E-value=0.00017  Score=64.86  Aligned_cols=23  Identities=22%  Similarity=-0.025  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -+.++|+||+|+|||++.+.++.
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            36899999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.78  E-value=0.00019  Score=69.34  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC----CCC---------ChHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAG---------EPAKLIRQRYREAADI   79 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~----~~G---------e~~~~ir~~f~~A~~~   79 (337)
                      .|++.-+.++++||||||||+||-.++.+   .|...+.++...-.+.    ..|         .+ ....+.+..+..+
T Consensus        50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p-~~~eq~l~i~~~l  128 (325)
T cd00983          50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQP-DTGEQALEIADSL  128 (325)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCC-CCHHHHHHHHHHH
Confidence            36777788999999999999999987654   3566666665331110    001         00 0122344455556


Q ss_pred             HHhcCceEEEeccccccccc
Q 019694           80 IKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~   99 (337)
                      +++..+.+|+||-+-++.++
T Consensus       129 i~s~~~~lIVIDSvaal~~~  148 (325)
T cd00983         129 VRSGAVDLIVVDSVAALVPK  148 (325)
T ss_pred             HhccCCCEEEEcchHhhccc
Confidence            67889999999999888754

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK03839 putative kinase; Provisional

Probab=97.77  E-value=2.2e-05  Score=68.96  Aligned_cols=31  Identities=29%  Similarity=0.477  Sum_probs=27.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .|+|.|+||+||||+++.+|+.++++++.++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            3889999999999999999999999887654

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.77  E-value=0.00011  Score=67.28  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCcccc--------------CC-----C----------C
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES--------------GN-----A----------G   63 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~--------------~~-----~----------G   63 (337)
                      .|++....++++|+||+|||+++..++.+   .|...+.++..+-..              ++     .          .
T Consensus        20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~   99 (234)
T PRK06067         20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE   99 (234)
T ss_pred             CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence            48888899999999999999999998654   255555555432100              00     0          0


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ........++......++...|.+|+||++-.+.
T Consensus       100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~  133 (234)
T PRK06067        100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA  133 (234)
T ss_pred             cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence            0011224555666566677789999999997653

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=97.75  E-value=0.00057  Score=65.41  Aligned_cols=139  Identities=8%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-------------cEEecCCccccCCCCCh--HHHH
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGEP--AKLI   69 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-------------~i~vs~s~l~~~~~Ge~--~~~i   69 (337)
                      +....+|-++.  -+.+...||+|+.|.||+.+++.+++.+-..             ++.++.       .|..  ...|
T Consensus         4 ~~~~l~~~i~~--~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-------~g~~i~vd~I   74 (299)
T PRK07132          4 WIKFLDNSATQ--NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-------FDKDLSKSEF   74 (299)
T ss_pred             HHHHHHHHHHh--CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-------CCCcCCHHHH
Confidence            33444444433  2567889999999999999999999987221             111210       0121  1234


Q ss_pred             HHHHHHHHHHH-HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC
Q 019694           70 RQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN  148 (337)
Q Consensus        70 r~~f~~A~~~~-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN  148 (337)
                      +++-+...-.. ..+...|++||++|++...            . ...|+..++             ++...+.+|.+|+
T Consensus        75 r~l~~~~~~~~~~~~~~KvvII~~~e~m~~~------------a-~NaLLK~LE-------------EPp~~t~~il~~~  128 (299)
T PRK07132         75 LSAINKLYFSSFVQSQKKILIIKNIEKTSNS------------L-LNALLKTIE-------------EPPKDTYFLLTTK  128 (299)
T ss_pred             HHHHHHhccCCcccCCceEEEEecccccCHH------------H-HHHHHHHhh-------------CCCCCeEEEEEeC
Confidence            44333330000 0147789999999865211            1 224444545             4566778888888


Q ss_pred             CCCCCcchhccCCCceEEEeC--CCHHHHHHHHHH
Q 019694          149 DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKG  181 (337)
Q Consensus       149 ~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~  181 (337)
                      .++.|.+.+..  |+-. +.+  |+.++..+.+..
T Consensus       129 ~~~kll~TI~S--Rc~~-~~f~~l~~~~l~~~l~~  160 (299)
T PRK07132        129 NINKVLPTIVS--RCQV-FNVKEPDQQKILAKLLS  160 (299)
T ss_pred             ChHhChHHHHh--CeEE-EECCCCCHHHHHHHHHH
Confidence            89999998875  4433 444  667777766653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.75  E-value=0.00033  Score=63.74  Aligned_cols=22  Identities=36%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      ++.++|+||.|+|||++.+.++
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            4789999999999999999997

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN02200 adenylate kinase family protein

Probab=97.74  E-value=3.4e-05  Score=71.21  Aligned_cols=41  Identities=39%  Similarity=0.685  Sum_probs=33.6

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      ++.+.|..|+|.||||+|||++|+.+|+++|+.  .++.+++.
T Consensus        38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll   78 (234)
T PLN02200         38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL   78 (234)
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence            355678889999999999999999999999864  56666554

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.74  E-value=0.00012  Score=62.02  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      ++|.|+||+|||++|+.+++.++..++  +...+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~   34 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH   34 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence            789999999999999999999887554  444443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=97.73  E-value=3.9e-05  Score=76.90  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=72.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc-----ccCCCCChHHHHHHHHHHHHHHHH----hcCc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKLIRQRYREAADIIK----KGKM   85 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l-----~~~~~Ge~~~~ir~~f~~A~~~~~----~~~p   85 (337)
                      .+....|||.|+.||||-.+||+|-+..   +-+|+.+|++-+     .|..+|.-    +..|.-|...-+    -...
T Consensus       243 A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe----KGAFTGA~~~r~GrFElAdG  318 (550)
T COG3604         243 AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE----KGAFTGAINTRRGRFELADG  318 (550)
T ss_pred             hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc----ccccccchhccCcceeecCC
Confidence            3456789999999999999999997765   458999999875     23333321    223333310000    1145


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME  164 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d  164 (337)
                      .-||+|||-.+--             .++.-|+..+.+.+-..+.|.  ..-.-.|-||++||+  +|-.+ .|.|+|-
T Consensus       319 GTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~~-V~~G~FR  379 (550)
T COG3604         319 GTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEEM-VRDGEFR  379 (550)
T ss_pred             CeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHHH-HHcCcch
Confidence            6799999943321             234445555553333333332  112346789999997  23332 3455553

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.71  E-value=3.4e-05  Score=65.37  Aligned_cols=30  Identities=20%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      |+|+|+||+|||++|+.+|+.++++++..+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            789999999999999999999999877544

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.70  E-value=2.9e-05  Score=66.42  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      .||++|-||||||+++..+|..++++++.++.
T Consensus         9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd   40 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISD   40 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHhCCceEehhh
Confidence            48899999999999999999999999887763

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.70  E-value=3.4e-05  Score=67.68  Aligned_cols=33  Identities=36%  Similarity=0.684  Sum_probs=27.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |++.||||+||||+|+.+|+++++  ..++.+++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l   34 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL   34 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence            789999999999999999999985  455555443

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01394 radB RadB

Probab=97.69  E-value=0.00015  Score=65.56  Aligned_cols=40  Identities=13%  Similarity=0.212  Sum_probs=32.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .|+.....++++|+||+|||++|..+|.+.   +.+.+.++..
T Consensus        14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            478778889999999999999999998765   4566666543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK00625 shikimate kinase; Provisional

Probab=97.69  E-value=3.7e-05  Score=67.82  Aligned_cols=31  Identities=10%  Similarity=-0.047  Sum_probs=28.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      -|+|.|.||+|||++++.+|++++++++.++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence            4899999999999999999999999988775

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.69  E-value=0.00014  Score=62.70  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=26.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      |+|.||||+|||++|+.+++.++..++  +..++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~   32 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL   32 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence            478999999999999999999986554  44444

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK08233 hypothetical protein; Provisional

Probab=97.69  E-value=0.00017  Score=62.78  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +..|.+.|+||+||||+|+.++..++
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46788999999999999999999986

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=97.68  E-value=0.00011  Score=73.24  Aligned_cols=131  Identities=13%  Similarity=0.166  Sum_probs=74.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHH-----------HHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~   86 (337)
                      ...++++|.+||||+++|+++....   +.+|+.++++.+....      .-..+|....           ..+.....+
T Consensus       162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g  235 (441)
T PRK10365        162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL------LESELFGHEKGAFTGADKRREGRFVEADGG  235 (441)
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH------HHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence            4669999999999999999997654   4689999998653211      1112222110           011233578


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce--
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME--  164 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d--  164 (337)
                      .|||||||.+...             .+..|+..++........+.  .....++.+|+||+..-   ..++.+|+|.  
T Consensus       236 tl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~  297 (441)
T PRK10365        236 TLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD  297 (441)
T ss_pred             EEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence            8999999986432             22334444442221111111  11223567888887632   2344566663  


Q ss_pred             -------EEEeCCCHHHH
Q 019694          165 -------KFYWAPTREDR  175 (337)
Q Consensus       165 -------~~i~~P~~~~R  175 (337)
                             ..+.+|...+|
T Consensus       298 l~~~l~~~~i~~ppLreR  315 (441)
T PRK10365        298 LYYRLNVVAIEVPSLRQR  315 (441)
T ss_pred             HHHHhccceecCCChhhc
Confidence                   45555777666

>PRK14531 adenylate kinase; Provisional

Probab=97.67  E-value=4.8e-05  Score=67.25  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ++-|++.||||+|||++++.+|+.+|+..+.
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is   32 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLS   32 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            3458999999999999999999999876554

>PRK13695 putative NTPase; Provisional

Probab=97.67  E-value=0.0003  Score=61.51  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      -++|.|+||+|||++++.+++++
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999988765

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.67  E-value=4e-05  Score=67.88  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES   59 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~   59 (337)
                      -|+|.||||+||||+|+.+|+.  .++..++..++..
T Consensus         2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r   36 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR   36 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence            4789999999999999999999  4456666655543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.66  E-value=0.00028  Score=64.93  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=28.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|++....++|.||||||||+++..++..+   |...+.++.
T Consensus        19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~   60 (230)
T PRK08533         19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST   60 (230)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            367777889999999999999986554433   555555554

>PRK14532 adenylate kinase; Provisional

Probab=97.65  E-value=4.1e-05  Score=67.61  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      -|+|.||||+||||+|+.+|+++|+.+  ++.+++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l   35 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML   35 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence            388999999999999999999998655  4544443

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.65  E-value=0.00014  Score=68.87  Aligned_cols=36  Identities=25%  Similarity=0.184  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      ++.|+|.|+|||||||+|+.+++++. .++.++..++
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~   37 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL   37 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence            56789999999999999999999983 3455555554

>PRK06696 uridine kinase; Validated

Probab=97.65  E-value=9.8e-05  Score=67.39  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=41.2

Q ss_pred             hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc
Q 019694            3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE   58 (337)
Q Consensus         3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~   58 (337)
                      .++..++...++.. ...|..|.+.|++|+||||+|+.|++.+   |.+++.++..++.
T Consensus         5 ~~~~~la~~~~~~~-~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696          5 QLIKELAEHILTLN-LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             HHHHHHHHHHHHhC-CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            34555555555532 3458899999999999999999999998   6677777766554

>PRK09354 recA recombinase A; Provisional

Probab=97.64  E-value=0.00019  Score=69.88  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC-------------CCCChHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADI   79 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~-------------~~Ge~~~~ir~~f~~A~~~   79 (337)
                      .|++.-+.++++||||||||+||-.++.+   .|-..+.++...-.+.             ++-.+ ....+.+..+..+
T Consensus        55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~l  133 (349)
T PRK09354         55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQP-DTGEQALEIADTL  133 (349)
T ss_pred             CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecC-CCHHHHHHHHHHH
Confidence            46777788999999999999999977543   3556666655431110             00011 1123445555566


Q ss_pred             HHhcCceEEEeccccccccc
Q 019694           80 IKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~   99 (337)
                      ++...+.+|+||=+-++..+
T Consensus       134 i~s~~~~lIVIDSvaaL~~~  153 (349)
T PRK09354        134 VRSGAVDLIVVDSVAALVPK  153 (349)
T ss_pred             hhcCCCCEEEEeChhhhcch
Confidence            67889999999999887653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.63  E-value=0.00011  Score=65.90  Aligned_cols=67  Identities=12%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCC-cccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAG-ELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s-~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      .+++.||+|+||||++++++..+..    .++.+... ++..         ..+|...    ..|..+...+-...|.+|
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~----~~~~~~i~~aLr~~pd~i   78 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDT----LSFENALKAALRQDPDVI   78 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCc----cCHHHHHHHHhcCCcCEE
Confidence            4789999999999999999887752    22222211 1110         0112111    234444333356689999


Q ss_pred             Eeccc
Q 019694           89 MINDL   93 (337)
Q Consensus        89 ~IDEi   93 (337)
                      ++||+
T Consensus        79 i~gEi   83 (198)
T cd01131          79 LVGEM   83 (198)
T ss_pred             EEcCC
Confidence            99998

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=97.63  E-value=0.0013  Score=62.70  Aligned_cols=133  Identities=12%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE-------------Ee---cCCccccC-CCCC--hHHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------------MM---SAGELESG-NAGE--PAKLIRQRYREAA   77 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i-------------~v---s~s~l~~~-~~Ge--~~~~ir~~f~~A~   77 (337)
                      .-+.|.++||+||  +||+++|+.+|+.+-..--             .+   +-+++.-- -.|.  ....||++-+.+.
T Consensus        20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~   97 (290)
T PRK07276         20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS   97 (290)
T ss_pred             cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence            3478899999996  6899999999987643210             00   01111000 0121  1234555554442


Q ss_pred             HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                      ..-..+...|++||++|.+...            .. ..|+..++             ++..++.+|.+|++++.|-|.+
T Consensus        98 ~~p~~~~~kV~II~~ad~m~~~------------Aa-NaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI  151 (290)
T PRK07276         98 QSGYEGKQQVFIIKDADKMHVN------------AA-NSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTI  151 (290)
T ss_pred             hCcccCCcEEEEeehhhhcCHH------------HH-HHHHHHhc-------------CCCCCeEEEEEECChhhCchHH
Confidence            1112455689999999976421            12 23434444             5567789999999999999998


Q ss_pred             ccCCCceEEEeC-CCHHHHHHHHH
Q 019694          158 IRDGRMEKFYWA-PTREDRIGVCK  180 (337)
Q Consensus       158 lR~gR~d~~i~~-P~~~~R~~Il~  180 (337)
                      +.  |+-. +.+ |+.++..+++.
T Consensus       152 ~S--Rcq~-i~f~~~~~~~~~~L~  172 (290)
T PRK07276        152 KS--RTQI-FHFPKNEAYLIQLLE  172 (290)
T ss_pred             HH--ccee-eeCCCcHHHHHHHHH
Confidence            76  5444 344 55555555553

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.62  E-value=8.8e-05  Score=76.21  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=39.8

Q ss_pred             CchhHHHHHhhhhc--CCCC-CCCcEEEEEcCCCchHHHHHHHHHHHhC-CCcEEecCCcc
Q 019694            1 MDKLVVHITKNFMS--LPNI-KVPLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGEL   57 (337)
Q Consensus         1 ~~k~~~~i~k~~l~--~~g~-~~p~giLL~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l   57 (337)
                      ||+++..|+ +|+.  ..|. ...+.++|.||||+|||+||++||+.+. .+++.+.+++.
T Consensus        81 lee~ieriv-~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~  140 (644)
T PRK15455         81 MEEAIEQIV-SYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGE  140 (644)
T ss_pred             cHHHHHHHH-HHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCC
Confidence            577777777 4442  1222 2346889999999999999999999875 46677766433

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.62  E-value=0.00027  Score=64.24  Aligned_cols=81  Identities=19%  Similarity=0.117  Sum_probs=51.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCcccc--------------------------CC---C
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELES--------------------------GN---A   62 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~--------------------------~~---~   62 (337)
                      .|++....+|+.||||+|||+|+..++.+.    |-+.+.++..+-..                          .+   .
T Consensus        14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~   93 (226)
T PF06745_consen   14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI   93 (226)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred             CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence            588889999999999999999999765432    77777776543110                          00   0


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           63 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        63 Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      +.....+..+.....+.++...+.+++||-+..+
T Consensus        94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l  127 (226)
T PF06745_consen   94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL  127 (226)
T ss_dssp             T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence            0001122334444444456778899999999887

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.60  E-value=0.00019  Score=61.52  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      +++.|+||+|||++|+.++..+   +...+.++...+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~   38 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV   38 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence            6899999999999999999998   666676665444

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.60  E-value=5.7e-05  Score=63.31  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=27.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      |.+.|+||||||++|+.+|+.++++++..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            689999999999999999999999987765

>PRK13948 shikimate kinase; Provisional

Probab=97.59  E-value=7.1e-05  Score=66.54  Aligned_cols=35  Identities=17%  Similarity=0.005  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      ++|..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D   42 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD   42 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence            56788999999999999999999999999988555

>PRK14527 adenylate kinase; Provisional

Probab=97.59  E-value=5.9e-05  Score=67.02  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .+.|+.|++.||||+|||++|+.+|+++++..+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i   35 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKL   35 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence            346788999999999999999999999987544

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.59  E-value=5.7e-05  Score=66.58  Aligned_cols=32  Identities=38%  Similarity=0.562  Sum_probs=26.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      |+|.||||+|||++|+.+|+.+++..+  +.+++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHH
Confidence            789999999999999999999886654  44444

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK13949 shikimate kinase; Provisional

Probab=97.57  E-value=6.5e-05  Score=65.82  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=28.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      +.|+|.|+||+|||++++.+|+.++++++..+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            35899999999999999999999999887655

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=97.57  E-value=7.5e-05  Score=77.10  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHH-----HHHHHHHHHHHHhcCceEEEecc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~i-----r~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      .+---.|||+|-||||||.+.+.+++-+....+.--.+   +.-+|.+....     +++..+. ..+--....|..|||
T Consensus       459 ~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkG---sSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDE  534 (804)
T KOG0478|consen  459 FRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKG---SSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDE  534 (804)
T ss_pred             ccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCc---cchhcceeeEEecCccceeeeec-CcEEEcCCceEEchh
Confidence            33446799999999999999999988765443321111   11111110000     0111111 111133456888999


Q ss_pred             cccccc-cCCCCcccchhhHhH-HHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchh
Q 019694           93 LDAGAG-RMGGTTQYTVNNQMV-NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPL  157 (337)
Q Consensus        93 iD~l~~-~~~~~~~~~~~~~~v-~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aL  157 (337)
                      +|++.. .++      +..+.+ ++++ ++.       ..|. ....+.+.-||+++|-..             .|+|.|
T Consensus       535 FDKM~dStrS------vLhEvMEQQTv-SIA-------KAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptL  599 (804)
T KOG0478|consen  535 FDKMSDSTRS------VLHEVMEQQTL-SIA-------KAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTL  599 (804)
T ss_pred             hhhhhHHHHH------HHHHHHHHhhh-hHh-------hcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhh
Confidence            999842 221      222221 2222 111       1122 113356778999999322             489999


Q ss_pred             ccCCCceEEEeC---CCHH
Q 019694          158 IRDGRMEKFYWA---PTRE  173 (337)
Q Consensus       158 lR~gR~d~~i~~---P~~~  173 (337)
                      |+  |||.+|.+   |++.
T Consensus       600 LS--RFDLIylllD~~DE~  616 (804)
T KOG0478|consen  600 LS--RFDLIFLLLDKPDER  616 (804)
T ss_pred             hh--hhcEEEEEecCcchh
Confidence            98  99998888   5554

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.57  E-value=0.00029  Score=61.13  Aligned_cols=41  Identities=20%  Similarity=0.367  Sum_probs=33.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN   61 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~   61 (337)
                      |..|.|+|.||+|||++|+++.+.+   |.+.+.+++..+...+
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l   45 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL   45 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence            5678999999999999999998876   7889999988876554

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.57  E-value=8.7e-05  Score=68.37  Aligned_cols=34  Identities=32%  Similarity=0.472  Sum_probs=28.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|.-|+|.||||+||||+|+.+|+.++++++.+
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~   37 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINM   37 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence            3455599999999999999999999998765544

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=97.56  E-value=0.00063  Score=63.67  Aligned_cols=125  Identities=8%  Similarity=-0.046  Sum_probs=73.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE--------------EecCCccccCC-CCC--hHHHHHHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------------MMSAGELESGN-AGE--PAKLIRQRYREAADIIK   81 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i--------------~vs~s~l~~~~-~Ge--~~~~ir~~f~~A~~~~~   81 (337)
                      .+|.++||+||+|+||..+|.++|+.+-..--              .-+..++.--+ .+.  ....+|++-+......-
T Consensus         5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~   84 (261)
T PRK05818          5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   84 (261)
T ss_pred             CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence            46889999999999999999999987633210              00011111000 011  12233443333210001


Q ss_pred             h-cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           82 K-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        82 ~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      . +...|++|+++|.+-..            .. ..|+..++             ++..++.+|.+|++++.|.|-++. 
T Consensus        85 e~~~~KV~II~~ae~m~~~------------Aa-NaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S-  137 (261)
T PRK05818         85 ESNGKKIYIIYGIEKLNKQ------------SA-NSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS-  137 (261)
T ss_pred             hcCCCEEEEeccHhhhCHH------------HH-HHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence            2 34679999999976321            22 23444444             667888999999999999999875 


Q ss_pred             CCceEEEeCCCH
Q 019694          161 GRMEKFYWAPTR  172 (337)
Q Consensus       161 gR~d~~i~~P~~  172 (337)
                       |+-. +.+|..
T Consensus       138 -RCq~-~~~~~~  147 (261)
T PRK05818        138 -RCVQ-YVVLSK  147 (261)
T ss_pred             -heee-eecCCh
Confidence             5544 334443

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.56  E-value=0.00029  Score=78.77  Aligned_cols=148  Identities=16%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc------cccCC-CCChH---HHHHHHHHHHHHHHHhcCceEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGN-AGEPA---KLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~------l~~~~-~Ge~~---~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      .+-|++||-|.||+|||+|..++|++.|-.++.++.|+      |.+.+ .++.+   ......|-.|     -....-|
T Consensus      1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WV 1615 (4600)
T COG5271        1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWV 1615 (4600)
T ss_pred             hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEE
Confidence            34578999999999999999999999999999999886      22222 22211   1222334444     2334578


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-CCCCceEEEEeCC------CCCCcchhccCC
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGND------FSTLYAPLIRDG  161 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-~~~~V~vI~TTN~------~~~ld~aLlR~g  161 (337)
                      ++||+.-.             +|.+..-|-..+|+-...-+|..+..- ..++..|.+|-|-      ...||..++-  
T Consensus      1616 lLDEiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271        1616 LLDEINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred             Eeehhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence            89998521             223333344455654444444443222 2345556666553      3368999985  


Q ss_pred             CceEEEeC-CCHHHHHHHHHHhccCC
Q 019694          162 RMEKFYWA-PTREDRIGVCKGIFRND  186 (337)
Q Consensus       162 R~d~~i~~-P~~~~R~~Il~~~~~~~  186 (337)
                      ||..++.- .+.++...|...++..-
T Consensus      1681 RFsvV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271        1681 RFSVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred             hhheEEecccccchHHHHHHhhCCcc
Confidence            88876554 88888888877777543

>PRK06547 hypothetical protein; Provisional

Probab=97.56  E-value=8.4e-05  Score=65.44  Aligned_cols=43  Identities=23%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG   63 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G   63 (337)
                      ..|..|++.|++|+|||++|+.+++.++..++.+  .++...+.+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~--d~~~~~~~~   55 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL--DDLYPGWHG   55 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc--cceeccccc
Confidence            5678999999999999999999999988776644  344444433

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.55  E-value=0.00017  Score=64.38  Aligned_cols=122  Identities=17%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             EEEEEcCCCchHHHHHHHH-HHH---hCCCcEEecCCccc----cCCCCChHH--HH----------HHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELE----SGNAGEPAK--LI----------RQRYREAADIIKK   82 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~ai-A~~---l~~~~i~vs~s~l~----~~~~Ge~~~--~i----------r~~f~~A~~~~~~   82 (337)
                      ..+++|.||+|||+.|-.. ...   -|..++. +...|.    ....+....  .+          ...+...   ...
T Consensus         2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   77 (193)
T PF05707_consen    2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL   77 (193)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred             EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence            4689999999999987544 333   2555443 433221    111111100  00          0111111   011


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR  162 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR  162 (337)
                      ...++|+|||+...++.+....  ......+ ..|    .            .....++-||++|.++..||+.+++  .
T Consensus        78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~------------~hRh~g~diiliTQ~~~~id~~ir~--l  136 (193)
T PF05707_consen   78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A------------QHRHYGWDIILITQSPSQIDKFIRD--L  136 (193)
T ss_dssp             GTT-EEEETTGGGTSB---T-T------HHH-HGG----G------------GCCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred             CCCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H------------HhCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence            2678999999998887665211  1111222 222    1            1233567899999999999998864  7


Q ss_pred             ceEEEeC
Q 019694          163 MEKFYWA  169 (337)
Q Consensus       163 ~d~~i~~  169 (337)
                      .+..+..
T Consensus       137 ve~~~~~  143 (193)
T PF05707_consen  137 VEYHYHC  143 (193)
T ss_dssp             EEEEEEE
T ss_pred             HheEEEE
Confidence            7777655

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PRK06217 hypothetical protein; Validated

Probab=97.55  E-value=7.7e-05  Score=65.90  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      -|+|.|+||+||||+|+++++.++++++..+
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D   33 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTD   33 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence            4899999999999999999999998876554

>PRK04040 adenylate kinase; Provisional

Probab=97.54  E-value=8.3e-05  Score=66.38  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh--CCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM--GINP   49 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l--~~~~   49 (337)
                      +|+.|+++|+||||||++++.+++++  +..+
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~   32 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI   32 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence            36789999999999999999999999  5544

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.53  E-value=0.0005  Score=62.67  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=51.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC-C-----------CC-----------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-----------AG-----------   63 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~-~-----------~G-----------   63 (337)
                      .|++....+.|+||||||||+++..++...         +...+.++..+-... .           ..           
T Consensus        14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~   93 (235)
T cd01123          14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA   93 (235)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence            478888889999999999999999997553         245566665431100 0           00           


Q ss_pred             ChHHHHHHHHHHHHHHHHhc-CceEEEeccccccc
Q 019694           64 EPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGA   97 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~-~p~Il~IDEiD~l~   97 (337)
                      .....+...+......+.+. .+.+|+||-|..+.
T Consensus        94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~  128 (235)
T cd01123          94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF  128 (235)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence            00011223334444445566 89999999998765

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.53  E-value=0.00035  Score=64.35  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccc----------------------------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE----------------------------------   58 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~----------------------------------   58 (337)
                      .|+++...+|++||||+|||++|..++.+   .|-+.+.++..+-.                                  
T Consensus        16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~   95 (237)
T TIGR03877        16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG   95 (237)
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence            58888899999999999999999876543   35555555433210                                  


Q ss_pred             -----cCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           59 -----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        59 -----~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                           ..|+-.....+.+.+....+.++...+.+|+||-+-.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~  139 (237)
T TIGR03877        96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY  139 (237)
T ss_pred             cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence                 001001122344555555555566778899999887654

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.53  E-value=0.00041  Score=62.51  Aligned_cols=30  Identities=27%  Similarity=0.242  Sum_probs=27.3

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .||.+....++|.|+-|+|||++.+.++.+
T Consensus        46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~   75 (198)
T PF05272_consen   46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE   75 (198)
T ss_pred             CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence            578998899999999999999999999666

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=97.52  E-value=5.4e-05  Score=79.26  Aligned_cols=137  Identities=19%  Similarity=0.246  Sum_probs=76.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHH-H----HHHHHHHhcCceEEEecccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-R----EAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f-~----~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      -.|||.|-||||||.|.+.+++-+-..++.--.+   +.-+|-++..+++.+ .    +| +.+--..+.|+.|||+|++
T Consensus       320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkg---ss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm  395 (682)
T COG1241         320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKG---SSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKM  395 (682)
T ss_pred             eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccc---ccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCC
Confidence            5699999999999999999998776554422111   011111111111111 0    11 1111336789999999986


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeCCCC-------------CCcchhccCCC
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR  162 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~gR  162 (337)
                      -..    ..         ..+.+.++.++ +++. .........+.-|++++|-..             .|+++|+.  |
T Consensus       396 ~~~----dr---------~aihEaMEQQt-IsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R  459 (682)
T COG1241         396 NEE----DR---------VAIHEAMEQQT-ISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R  459 (682)
T ss_pred             ChH----HH---------HHHHHHHHhcE-eeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence            421    11         11222222111 1111 112223456777888888544             48899996  9


Q ss_pred             ceEEEeC---CCHHHHHHH
Q 019694          163 MEKFYWA---PTREDRIGV  178 (337)
Q Consensus       163 ~d~~i~~---P~~~~R~~I  178 (337)
                      ||.++.+   |+.+.=..|
T Consensus       460 FDLifvl~D~~d~~~D~~i  478 (682)
T COG1241         460 FDLIFVLKDDPDEEKDEEI  478 (682)
T ss_pred             CCeeEEecCCCCccchHHH
Confidence            9998888   776544444

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.52  E-value=0.00099  Score=60.96  Aligned_cols=39  Identities=13%  Similarity=0.090  Sum_probs=31.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG   55 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s   55 (337)
                      |+++..-++|.|+||+|||+++..++...    +.+++.++..
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E   51 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE   51 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence            78877889999999999999998876543    7777666643

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.00019  Score=65.84  Aligned_cols=72  Identities=15%  Similarity=0.110  Sum_probs=44.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC--------CCcEEec-CCccccCCCCChHHHHHHHHHH------H---HHHHHhc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG--------INPIMMS-AGELESGNAGEPAKLIRQRYRE------A---ADIIKKG   83 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~--------~~~i~vs-~s~l~~~~~Ge~~~~ir~~f~~------A---~~~~~~~   83 (337)
                      ...|+.||||||||++.|-+|.-+.        ..+..++ .+++.....|-+.--+-.+..-      +   -.++++.
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm  217 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM  217 (308)
T ss_pred             eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence            3478999999999999999988652        2233333 3444444444432111111111      1   1344689


Q ss_pred             CceEEEeccc
Q 019694           84 KMCCLMINDL   93 (337)
Q Consensus        84 ~p~Il~IDEi   93 (337)
                      .|-|+++|||
T Consensus       218 ~PEViIvDEI  227 (308)
T COG3854         218 SPEVIIVDEI  227 (308)
T ss_pred             CCcEEEEecc
Confidence            9999999999

>PRK14530 adenylate kinase; Provisional

Probab=97.50  E-value=8.9e-05  Score=67.19  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|+|.||||+||||+|+.+|+.++++++.+
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~   34 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT   34 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            488899999999999999999999765533

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.49  E-value=0.00015  Score=68.42  Aligned_cols=25  Identities=16%  Similarity=-0.065  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.+++.||||+|||+|.++++..+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            6899999999999999999998764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.49  E-value=0.00023  Score=65.95  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      |+|.|+||+|||++|+.+++.+   +..++.++...+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            7899999999999999999987   456677665444

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.49  E-value=0.00011  Score=64.37  Aligned_cols=29  Identities=41%  Similarity=0.690  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ..|++.||||+||||+|+.+++++|+..+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~   32 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL   32 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            36889999999999999999999986544

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.48  E-value=0.00016  Score=69.50  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             hHHHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694            4 LVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus         4 ~~~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .+.++++.++. ...+.++..|.|.|+||||||++++.+|+.+|++++.+.
T Consensus       115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            34555665544 345677889999999999999999999999999998543

>PRK04296 thymidine kinase; Provisional

Probab=97.48  E-value=0.00036  Score=62.20  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=41.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC-c-------cccCCCCCh-----HHHHHHHHHHHHHHHHhcCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG-E-------LESGNAGEP-----AKLIRQRYREAADIIKKGKM   85 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s-~-------l~~~~~Ge~-----~~~ir~~f~~A~~~~~~~~p   85 (337)
                      ..++++||||+|||+++..++..+   +..++.++.+ +       +.+. .|-.     .....+.+..+.+  .....
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEE--EGEKI   79 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHh--hCCCC
Confidence            467899999999999998887765   5555555431 1       1111 1211     0112334444422  34567


Q ss_pred             eEEEecccc
Q 019694           86 CCLMINDLD   94 (337)
Q Consensus        86 ~Il~IDEiD   94 (337)
                      .+|+|||+.
T Consensus        80 dvviIDEaq   88 (190)
T PRK04296         80 DCVLIDEAQ   88 (190)
T ss_pred             CEEEEEccc
Confidence            899999994

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.47  E-value=9.3e-05  Score=64.22  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=25.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      |-+.|||||||||+|+.+|+.+|+++++
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            5689999999999999999999998763

>TIGR00767 rho transcription termination factor Rho

Probab=97.46  E-value=0.00034  Score=69.23  Aligned_cols=75  Identities=15%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCC------cEEecCC---c-----------cccCCCCChHHH----HHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-----------LESGNAGEPAKL----IRQRYREAAD   78 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~------~i~vs~s---~-----------l~~~~~Ge~~~~----ir~~f~~A~~   78 (337)
                      -++|.||||+|||++++.+++.....      ++.+...   +           +...-.+++...    ...+...|..
T Consensus       170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~  249 (415)
T TIGR00767       170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR  249 (415)
T ss_pred             EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence            38999999999999999999975432      2222211   1           111123333222    2234445545


Q ss_pred             HHHhcCceEEEeccccccc
Q 019694           79 IIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~   97 (337)
                      ....++..||||||+..+.
T Consensus       250 ~~~~GkdVVLlIDEitR~a  268 (415)
T TIGR00767       250 LVEHKKDVVILLDSITRLA  268 (415)
T ss_pred             HHHcCCCeEEEEEChhHHH
Confidence            5557889999999998764

Members of this family differ in the specificity of RNA binding.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.45  E-value=0.00015  Score=62.58  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=20.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |.|+|+||||||||++.+++. |.+++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            679999999999999999998 77766

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.45  E-value=0.00079  Score=60.95  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=26.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|++.-..+.|+||||+|||+++..+|...
T Consensus        14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence            578888899999999999999999987653

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.45  E-value=0.0013  Score=57.29  Aligned_cols=73  Identities=12%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEE---ecCCc-------------c--c---c--CCC-CCh---HHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIM---MSAGE-------------L--E---S--GNA-GEP---AKLIRQR   72 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~---vs~s~-------------l--~---~--~~~-Ge~---~~~ir~~   72 (337)
                      .|.+|+++|.|||++|-.+|-..   |..+..   +++..             +  .   .  .+. .+.   ....+..
T Consensus         4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~   83 (159)
T cd00561           4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG   83 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence            46789999999999999886543   555444   44420             0  0   0  000 111   1244567


Q ss_pred             HHHHHHHHHhcCceEEEeccccc
Q 019694           73 YREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        73 f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      ++.|.+.+......+|+||||-.
T Consensus        84 ~~~a~~~~~~~~~dLlVLDEi~~  106 (159)
T cd00561          84 WAFAKEAIASGEYDLVILDEINY  106 (159)
T ss_pred             HHHHHHHHhcCCCCEEEEechHh
Confidence            78887888888899999999853

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.44  E-value=0.0012  Score=58.39  Aligned_cols=19  Identities=32%  Similarity=0.050  Sum_probs=18.0

Q ss_pred             EEEEcCCCchHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA   42 (337)
                      ++|+||.|.|||++.+.++
T Consensus         2 ~~ltG~N~~GKst~l~~i~   20 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVG   20 (185)
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999999997

>PRK14528 adenylate kinase; Provisional

Probab=97.43  E-value=0.00014  Score=64.57  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=26.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +-|++.||||+|||++|+.+|+.++++.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~   32 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST   32 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence            3488999999999999999999999776543

>TIGR00416 sms DNA repair protein RadA

Probab=97.43  E-value=0.0016  Score=65.80  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------CCCChHHHHH----HHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKK   82 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------~~Ge~~~~ir----~~f~~A~~~~~~   82 (337)
                      .|+.+...+||.|+||+|||+|+..++..+   +.+.+.++..+-...      ..|-....+.    .-+....+.++.
T Consensus        89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~  168 (454)
T TIGR00416        89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE  168 (454)
T ss_pred             CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence            377777889999999999999999987754   346667765432110      0110000000    011222233467


Q ss_pred             cCceEEEeccccccc
Q 019694           83 GKMCCLMINDLDAGA   97 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~   97 (337)
                      ..|.+|+||.|-.+.
T Consensus       169 ~~~~~vVIDSIq~l~  183 (454)
T TIGR00416       169 ENPQACVIDSIQTLY  183 (454)
T ss_pred             cCCcEEEEecchhhc
Confidence            789999999998765

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK02496 adk adenylate kinase; Provisional

Probab=97.42  E-value=0.00013  Score=64.27  Aligned_cols=30  Identities=27%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -+++.||||+|||++|+.+|+.++++.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~   32 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST   32 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence            488999999999999999999998765543

>PRK05973 replicative DNA helicase; Provisional

Probab=97.42  E-value=0.0025  Score=59.07  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=30.6

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .|+.+-..++|.|+||+|||+++-.++.+.   |.+.+.++..
T Consensus        59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE  101 (237)
T PRK05973         59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE  101 (237)
T ss_pred             CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            377777889999999999999988776543   6666555543

>PRK13946 shikimate kinase; Provisional

Probab=97.42  E-value=0.00014  Score=64.28  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .++-|+|.|+||+|||++++.+|+.+|++|+..+
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D   42 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD   42 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence            4578999999999999999999999999987655

>TIGR01351 adk adenylate kinases

Probab=97.42  E-value=0.00013  Score=65.92  Aligned_cols=28  Identities=32%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      |+|.||||+|||++|+.+|+.+|+..+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is   29 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS   29 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            7899999999999999999999876554

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.42  E-value=0.00052  Score=73.20  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHH---HhCCCcEEecCCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFA---KMGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~---~l~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~f~~A~~~~   80 (337)
                      .|++.-..++++||||||||+|+..++.   ..|-..+.++..+-.+.    ..|-.        .......+..+..++
T Consensus        55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv  134 (790)
T PRK09519         55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (790)
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence            3677788899999999999999976543   33555566655432110    00100        001123444455566


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+.+|+||-|-++..
T Consensus       135 ~~~~~~LVVIDSI~aL~~  152 (790)
T PRK09519        135 RSGALDIVVIDSVAALVP  152 (790)
T ss_pred             hcCCCeEEEEcchhhhcc
Confidence            778899999999998885

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.42  E-value=0.00024  Score=60.04  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=27.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      +++...|+|.|+.|+|||++++.+++.++..
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            3555689999999999999999999999875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.41  E-value=0.00016  Score=62.73  Aligned_cols=32  Identities=19%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      +.|+|.|+||+|||++++.+|+.+|++++..+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D   34 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD   34 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence            35889999999999999999999999887543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00012  Score=64.18  Aligned_cols=30  Identities=30%  Similarity=0.602  Sum_probs=27.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .|+++|.|||||||+|+.++ ++|...+.++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence            47899999999999999999 9999887765

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.40  E-value=0.00064  Score=63.42  Aligned_cols=39  Identities=15%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~   54 (337)
                      .|+.+-..++|.||||+|||+++..++..+    |..++.++.
T Consensus        25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~   67 (271)
T cd01122          25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL   67 (271)
T ss_pred             EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence            367777788999999999999999876653    666666654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.39  E-value=0.00015  Score=65.68  Aligned_cols=32  Identities=34%  Similarity=0.568  Sum_probs=26.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      |+++||||+|||++|+.+|+++++..+.  .+++
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl   34 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDM   34 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCcc
Confidence            8899999999999999999999865554  4444

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.39  E-value=0.00047  Score=67.69  Aligned_cols=74  Identities=15%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCC-----CcEEecCC-------c--------cccCCCCChH-HHH---HHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAG-------E--------LESGNAGEPA-KLI---RQRYREAADI   79 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~-----~~i~vs~s-------~--------l~~~~~Ge~~-~~i---r~~f~~A~~~   79 (337)
                      +||+||||||||+|++.+++.+..     .++.+-.+       +        +......++. ..+   ......|...
T Consensus       136 ~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f  215 (380)
T PRK12608        136 GLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRL  215 (380)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999887633     22221111       0        1111111221 222   2334445555


Q ss_pred             HHhcCceEEEeccccccc
Q 019694           80 IKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~   97 (337)
                      ...++..+|++||+..++
T Consensus       216 ~~~GkdVVLvlDsltr~A  233 (380)
T PRK12608        216 VEQGKDVVILLDSLTRLA  233 (380)
T ss_pred             HHcCCCEEEEEeCcHHHH
Confidence            568899999999998765

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.39  E-value=0.00044  Score=51.37  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=24.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh-CCCcEEecC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA   54 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~   54 (337)
                      +.+.|+||+|||++++++++.+ +.++..++.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence            6789999999999999999996 344555544

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.39  E-value=0.0009  Score=58.78  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      +|+.|+||+|||++|..++...+.+.+.+....
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~   34 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE   34 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence            689999999999999999988777777775553

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.38  E-value=0.00057  Score=63.97  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCcccc----------CCCCC---------------h--
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P--   65 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~----------~~~Ge---------------~--   65 (337)
                      .|++....+|++||||||||++|-.+|.+   .|-+.+.++..+-..          ...|-               +  
T Consensus        31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~  110 (259)
T TIGR03878        31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASST  110 (259)
T ss_pred             CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCch
Confidence            47888899999999999999999987654   255555555431000          00000               0  


Q ss_pred             --HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           66 --AKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        66 --~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                        ...+.+++......+++..+.+|+||=+-.+
T Consensus       111 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l  143 (259)
T TIGR03878       111 ELRENVPNLLATLAYAIKEYKVKNTVIDSITGL  143 (259)
T ss_pred             hhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHh
Confidence              0123344445545556778889998887554

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.37  E-value=0.0019  Score=57.02  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +++...+.|.||.|+|||||.+++...
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~~   44 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLYA   44 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            445567889999999999999999643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK01184 hypothetical protein; Provisional

Probab=97.37  E-value=0.00018  Score=63.31  Aligned_cols=30  Identities=33%  Similarity=0.542  Sum_probs=25.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +.|+|+||||+||||+++ +++++|++++..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~   31 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM   31 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence            468999999999999998 788998776544

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00019  Score=63.13  Aligned_cols=42  Identities=17%  Similarity=0.114  Sum_probs=33.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP   65 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~   65 (337)
                      +.|.|.|++|+||||+.+++|+.++++|+-++  .+.....|.+
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g~s   44 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTGMS   44 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHCcC
Confidence            45889999999999999999999999998665  3333334443

>PF13245 AAA_19: Part of AAA domain

Probab=97.35  E-value=0.00033  Score=53.33  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCchHH-HHHHHHHHHh------CCCcEEecCC
Q 019694           22 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT-~lA~aiA~~l------~~~~i~vs~s   55 (337)
                      ..+++.|||||||| ++++.++...      +-.++.++.+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t   51 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT   51 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence            34667999999999 5666666655      4455555543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.34  E-value=0.001  Score=58.50  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+---++|+||+|||||+|.|++|.-
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhc
Confidence            34456899999999999999999984

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.34  E-value=0.00023  Score=62.53  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      ++-|+|.||+|+|||++++.+|+.++++++..+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            4569999999999999999999999988876653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.34  E-value=0.00024  Score=61.65  Aligned_cols=48  Identities=15%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCc
Q 019694            9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGE   56 (337)
Q Consensus         9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~   56 (337)
                      +..++.......++.++|+|++|+|||++.+++...+...   ++.++...
T Consensus        12 l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~   62 (185)
T PF13191_consen   12 LRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD   62 (185)
T ss_dssp             HHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred             HHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence            3344444445567899999999999999999887766433   55555543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.33  E-value=0.0008  Score=60.24  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESG   60 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~   60 (337)
                      ....|+.+++.|+||+|||+++..+..++ +-.++.++..++...
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~   55 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF   55 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence            34789999999999999999999999988 778999998887654

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.33  E-value=0.00054  Score=64.64  Aligned_cols=70  Identities=16%  Similarity=0.210  Sum_probs=41.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc---cCC-CCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~---~~~-~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      |+|+|.||+|||++|+.++..+   +..++.++...+.   +.| -...++.+|..+..+.+-.- .+..||++|+.-
T Consensus         4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~n   80 (270)
T PF08433_consen    4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNN   80 (270)
T ss_dssp             EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S--
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCc
Confidence            7899999999999999998864   5677777755543   112 13457778877666643322 334789999864

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>KOG2383 consensus Predicted ATPase [General function prediction only]

Probab=97.31  E-value=0.00038  Score=68.26  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+|+||.|||.-|||||+|--.....+
T Consensus       112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~  138 (467)
T KOG2383|consen  112 GPPKGLYLYGSVGCGKTMLMDLFYDAL  138 (467)
T ss_pred             CCCceEEEecccCcchhHHHHHHhhcC
Confidence            469999999999999999999887544

>PLN02674 adenylate kinase

Probab=97.31  E-value=0.00035  Score=64.98  Aligned_cols=38  Identities=21%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      +++..|+|.||||+||||+|+.+|+++++.  .++.+++.
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll   66 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML   66 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence            445678999999999999999999999864  45555543

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=97.30  E-value=0.00029  Score=73.64  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCC----cEEecCCc------cccCCCCChHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~----~i~vs~s~------l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      +.++|+||||||||++++++++.++.+    ++.+.-+.      +..-+.|.+.+.++..|..|
T Consensus        38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~  102 (608)
T TIGR00764        38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKA  102 (608)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHh
Confidence            589999999999999999999999754    22222222      22335567778888888887

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.30  E-value=0.00054  Score=66.77  Aligned_cols=69  Identities=14%  Similarity=0.162  Sum_probs=41.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecC-Cccc---------cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~-s~l~---------~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ...+|+.||+|+||||+.+++...+.-    .++.+.. .++.         ...+|...    .-|..+...+-...|.
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~----~~~~~~l~~~lr~~pd  197 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDT----LSFANALRAALREDPD  197 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCC----cCHHHHHHHhhccCCC
Confidence            356789999999999999999887642    2332211 1111         11122211    1233433333578999


Q ss_pred             EEEeccc
Q 019694           87 CLMINDL   93 (337)
Q Consensus        87 Il~IDEi   93 (337)
                      +|++||+
T Consensus       198 ~i~vgEi  204 (343)
T TIGR01420       198 VILIGEM  204 (343)
T ss_pred             EEEEeCC
Confidence            9999998

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.29  E-value=0.00019  Score=58.40  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      |+|.|+||+||||+|+.+++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999998

...

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.29  E-value=0.0026  Score=57.78  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=31.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s   55 (337)
                      .|++....+++.|+||+|||++|..++.+   .|.+.+.++..
T Consensus        11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e   53 (224)
T TIGR03880        11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE   53 (224)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            47888889999999999999999988654   26566655554

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.29  E-value=0.0012  Score=57.51  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .+++.||||+|||+++..+|..+   +..+..++..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            47899999999999999988765   5566666554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.28  E-value=0.00081  Score=59.08  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      .+|+.|+||+|||++|..++.+++.+.+.+....
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~   36 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ   36 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence            5899999999999999999999887777776654

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=97.28  E-value=0.00068  Score=65.80  Aligned_cols=103  Identities=16%  Similarity=0.217  Sum_probs=65.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc-----C----CCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G----NAGEPAKLIRQRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~-----~----~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      +|++|..||||-.+|+++-...   ..+|+.+++..+-+     .    -.|..++  ...|+.|       ...-+|+|
T Consensus       230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk--~GffE~A-------ngGTVlLD  300 (511)
T COG3283         230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGK--KGFFEQA-------NGGTVLLD  300 (511)
T ss_pred             eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCc--cchhhhc-------cCCeEEee
Confidence            8999999999999999986554   46899999886522     1    1222222  2566666       55679999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ||-.+..             .++.-|+..+.+-+...+.+.  .+..-+|-|||||..+
T Consensus       301 eIgEmSp-------------~lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n  344 (511)
T COG3283         301 EIGEMSP-------------RLQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN  344 (511)
T ss_pred             hhhhcCH-------------HHHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence            9954432             234455566664333333222  1224578999999753

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=97.28  E-value=0.00036  Score=71.76  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC-----cc-----ccCCCCChHHHHHHHHHHHHHHHHhcCceEEE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-----EL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLM   89 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s-----~l-----~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~   89 (337)
                      ---.|++.|-||||||.+.+++++-+-..++.. +.     .|     .++..|+.      .++ | +.+--....|..
T Consensus       377 GDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts-GkaSSaAGLTaaVvkD~esgdf------~iE-A-GALmLADnGICC  447 (764)
T KOG0480|consen  377 GDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS-GKASSAAGLTAAVVKDEESGDF------TIE-A-GALMLADNGICC  447 (764)
T ss_pred             CCceEEEeCCCCccHHHHHHHHhccCCcceEec-CcccccccceEEEEecCCCCce------eee-c-CcEEEccCceEE
Confidence            345699999999999999999988766554422 21     11     11222221      111 1 011122456888


Q ss_pred             ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcch
Q 019694           90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAP  156 (337)
Q Consensus        90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~a  156 (337)
                      |||+|++-.+    .+......+-+|+.        .+.-.|. .-....|--||+++|-..             .+.+|
T Consensus       448 IDEFDKMd~~----dqvAihEAMEQQtI--------SIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msAp  514 (764)
T KOG0480|consen  448 IDEFDKMDVK----DQVAIHEAMEQQTI--------SIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAP  514 (764)
T ss_pred             echhcccChH----hHHHHHHHHHhhee--------hheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCch
Confidence            9999987432    12222222222222        0011111 112345667888888543             47899


Q ss_pred             hccCCCceEEEeC---CCHHHHHHHHHHhc
Q 019694          157 LIRDGRMEKFYWA---PTREDRIGVCKGIF  183 (337)
Q Consensus       157 LlR~gR~d~~i~~---P~~~~R~~Il~~~~  183 (337)
                      ++.  |||.++-+   |++..=..|-+.++
T Consensus       515 imS--RFDL~FiLlD~~nE~~D~~ia~hIl  542 (764)
T KOG0480|consen  515 IMS--RFDLFFILLDDCNEVVDYAIARHIL  542 (764)
T ss_pred             hhh--hhcEEEEEecCCchHHHHHHHHHHH
Confidence            986  99998887   88877666655554

>PRK04182 cytidylate kinase; Provisional

Probab=97.27  E-value=0.00027  Score=61.37  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=26.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      .|+|.|+||+|||++++.+|+.+|++++.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            48899999999999999999999988764

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.27  E-value=0.00091  Score=64.02  Aligned_cols=41  Identities=20%  Similarity=0.403  Sum_probs=31.9

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE   56 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~   56 (337)
                      .|++....++++||||+|||++|-.+|...         +-..+.++..+
T Consensus        90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~  139 (310)
T TIGR02236        90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN  139 (310)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence            378888889999999999999999987763         22566666543

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.27  E-value=0.00019  Score=61.27  Aligned_cols=31  Identities=32%  Similarity=0.568  Sum_probs=25.2

Q ss_pred             EEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           26 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        26 L~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |.||||+|||++|+.||+++|+  ..++.+++.
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll   31 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL   31 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence            5799999999999999999975  455555443

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.25  E-value=0.0034  Score=56.21  Aligned_cols=22  Identities=27%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      ..-++|+||.|+|||++.+.++
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHH
Confidence            3579999999999999999998

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.23  E-value=0.0013  Score=57.51  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCcc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGEL   57 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l   57 (337)
                      ...|.-|+|.|+||+|||++++.+++.+..   ..+.+++..+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~   46 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL   46 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence            356788999999999999999999998862   3455554433

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.22  E-value=0.0014  Score=63.15  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=24.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .|++.-..++|+||||+|||+||..+|-
T Consensus        91 GGi~~G~iteI~G~~GsGKTql~lqla~  118 (313)
T TIGR02238        91 GGIESMSITEVFGEFRCGKTQLSHTLCV  118 (313)
T ss_pred             CCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence            3688888899999999999999988764

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.22  E-value=0.0012  Score=59.35  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      |+.++|.||+|+||||.+--+|..+   +..+-.++..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D   38 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD   38 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence            7889999999999999877777654   4444444444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.22  E-value=0.0019  Score=62.16  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|++....++++||||+|||++|-.+|...
T Consensus        97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~  126 (317)
T PRK04301         97 GGIETQSITEFYGEFGSGKTQICHQLAVNV  126 (317)
T ss_pred             CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence            368888899999999999999999988663

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=97.22  E-value=0.00033  Score=63.06  Aligned_cols=30  Identities=23%  Similarity=0.111  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      .|+.+++.|+||+|||++|+.+|.++++..
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~   31 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI   31 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            367899999999999999999999998754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.22  E-value=0.004  Score=56.30  Aligned_cols=24  Identities=21%  Similarity=0.012  Sum_probs=20.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      .....++|.||.|+|||++.+.++
T Consensus        27 ~~~~~~~l~G~n~~GKstll~~i~   50 (204)
T cd03282          27 GSSRFHIITGPNMSGKSTYLKQIA   50 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            334679999999999999999886

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.22  E-value=0.0026  Score=62.04  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .|++.-....|+||||||||+||..+|-
T Consensus       121 GGi~~G~ItEI~G~~GsGKTql~lqlav  148 (344)
T PLN03187        121 GGIETRCITEAFGEFRSGKTQLAHTLCV  148 (344)
T ss_pred             CCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence            3777778889999999999999998864

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.22  E-value=0.0027  Score=56.81  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA   42 (337)
                      +.++|+||.|+|||+|.+.++
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            579999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.21  E-value=0.00067  Score=65.68  Aligned_cols=71  Identities=17%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC-Ch----H---HHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG-EP----A---KLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G-e~----~---~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      .+.|.|.|+||+|||+|++.+++.++.+++.--+.++.....+ +.    .   ..+...+....+. ...+..+||+|-
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~-~~~a~~iif~D~  240 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYA-VRHAHKIAFIDT  240 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHH-HhhcCCeEEEcC
Confidence            5689999999999999999999999998875555544322221 11    1   2233323222122 244667999985

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.19  E-value=0.0031  Score=57.42  Aligned_cols=22  Identities=36%  Similarity=0.152  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ..++|+||.|+|||++.+.++.
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            6789999999999999999863

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK14526 adenylate kinase; Provisional

Probab=97.19  E-value=0.00035  Score=63.56  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      |+|.||||+|||++++.+|+.+++..  ++.+++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~l   34 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDL   34 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCce--eecChH
Confidence            78999999999999999999988654  445554

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.19  E-value=0.0018  Score=64.59  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.....+++.||||||||+++.+++.+
T Consensus       206 ve~~~Nli~lGp~GTGKThla~~l~~~  232 (449)
T TIGR02688       206 VEPNYNLIELGPKGTGKSYIYNNLSPY  232 (449)
T ss_pred             HhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence            345577999999999999999998776

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=97.19  E-value=0.00037  Score=60.02  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=26.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      .|.|+|+||+|||++|+.+++.+|.+++.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~   30 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLIS   30 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            47899999999999999999999988654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13764 ATPase; Provisional

Probab=97.16  E-value=0.00051  Score=71.44  Aligned_cols=28  Identities=21%  Similarity=0.105  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ...++||++||||+||||++++++..+.
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467899999999999999999998875

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.15  E-value=0.0017  Score=57.13  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=32.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE   58 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~   58 (337)
                      ...+..+.|.|+||+|||++++.++..+   +...+.+++..+.
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r   58 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR   58 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence            4667889999999999999999999887   4455666665553

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.15  E-value=0.0022  Score=54.89  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+...++|.||+|+|||+|.++++..+.
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3446789999999999999999988654

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.14  E-value=0.0014  Score=57.19  Aligned_cols=37  Identities=16%  Similarity=0.182  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      .+..|.|.|+||+|||++++.++..+   +..+..+++..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~   42 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA   42 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence            45688999999999999999999987   44456666544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.14  E-value=0.00033  Score=62.62  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=17.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+++||||||||+++..++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            58899999999997666665555

>PRK14974 cell division protein FtsY; Provisional

Probab=97.13  E-value=0.0018  Score=63.03  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .|..++|.||||+||||++..+|..+   |..+..+.+.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D  177 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD  177 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            47899999999999999888887765   4455555443

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=97.13  E-value=0.00028  Score=66.79  Aligned_cols=77  Identities=13%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH------HhCCCcEEecCCccccCCCCC-hHHHHHHHHHHH----HHHHHhcCceEE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFA------KMGINPIMMSAGELESGNAGE-PAKLIRQRYREA----ADIIKKGKMCCL   88 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~------~l~~~~i~vs~s~l~~~~~Ge-~~~~ir~~f~~A----~~~~~~~~p~Il   88 (337)
                      ...-+||.||.|.|||+||+-|.+      ++.-.|+.+++..+.....-. --..++..|.-|    ..+++......+
T Consensus       207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml  286 (531)
T COG4650         207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML  286 (531)
T ss_pred             ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence            334489999999999999999865      456789999999875421000 001122333332    245566678899


Q ss_pred             Eecccccc
Q 019694           89 MINDLDAG   96 (337)
Q Consensus        89 ~IDEiD~l   96 (337)
                      |+|||-.+
T Consensus       287 fldeigel  294 (531)
T COG4650         287 FLDEIGEL  294 (531)
T ss_pred             ehHhhhhc
Confidence            99999654

>PRK12338 hypothetical protein; Provisional

Probab=97.12  E-value=0.00048  Score=66.34  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ..|..|++.|+||+|||++|+++|..+|+..+
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~   33 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHL   33 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence            35789999999999999999999999998643

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.12  E-value=0.0018  Score=57.87  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      ..|.-|.|.|++|+|||+++++++..+   +...+.+++..+
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~   63 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV   63 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence            457788999999999999999999986   455677766544

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.10  E-value=0.0011  Score=65.31  Aligned_cols=69  Identities=13%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCC-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s-~l~-----------~~~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      ..+|+.||+|+||||+.+++..+..     ..++.+... ++.           ...+|...    .-|..+...+-+..
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~----~~~~~~l~~aLR~~  225 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDV----DSFANGIRLALRRA  225 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCc----cCHHHHHHHhhccC
Confidence            3578999999999999999988762     334444221 211           01112111    13555544446789


Q ss_pred             ceEEEecccc
Q 019694           85 MCCLMINDLD   94 (337)
Q Consensus        85 p~Il~IDEiD   94 (337)
                      |.+|++.|+-
T Consensus       226 PD~I~vGEiR  235 (372)
T TIGR02525       226 PKIIGVGEIR  235 (372)
T ss_pred             CCEEeeCCCC
Confidence            9999999983

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.09  E-value=0.0033  Score=54.48  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++...+.|.||.|+|||+|.+.++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4455678999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.08  E-value=0.00079  Score=60.54  Aligned_cols=38  Identities=29%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s~   56 (337)
                      ..|..|.|.|++|+|||||++++++.++. .+..++...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~   42 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS   42 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence            35788999999999999999999999843 344455443

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.07  E-value=0.0041  Score=55.70  Aligned_cols=74  Identities=16%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe---cCC----cc--cc--------------CCCCC----hHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMM---SAG----EL--ES--------------GNAGE----PAKLIRQ   71 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v---s~s----~l--~~--------------~~~Ge----~~~~ir~   71 (337)
                      ..|.+||++|.|||+.|-.+|-.+   |..+..+   .+.    +.  ..              .|..+    .....+.
T Consensus        23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~  102 (191)
T PRK05986         23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE  102 (191)
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence            467899999999999999886543   4433322   111    10  00              01111    1245667


Q ss_pred             HHHHHHHHHHhcCceEEEeccccc
Q 019694           72 RYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        72 ~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .|..|.+.+....-.+|++|||-.
T Consensus       103 ~~~~a~~~l~~~~ydlvVLDEi~~  126 (191)
T PRK05986        103 GWEEAKRMLADESYDLVVLDELTY  126 (191)
T ss_pred             HHHHHHHHHhCCCCCEEEEehhhH
Confidence            888888888888899999999853

>PRK04328 hypothetical protein; Provisional

Probab=97.07  E-value=0.00095  Score=62.08  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~   54 (337)
                      .|++....+|++||||||||+|+..++.+   .|-+.+.++.
T Consensus        18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~   59 (249)
T PRK04328         18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL   59 (249)
T ss_pred             CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            47888899999999999999998876543   2445444443

>PLN02459 probable adenylate kinase

Probab=97.07  E-value=0.00073  Score=63.36  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=27.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      .-++|.||||+|||++|+.+|+.+++.  .++.+++
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdl   63 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDL   63 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHH
Confidence            347788999999999999999999865  4454444

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.06  E-value=0.00068  Score=61.55  Aligned_cols=41  Identities=20%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA   62 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~   62 (337)
                      +.++|+||+|||||.+|-++|+++|.+++..+.-.......
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~   42 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS   42 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence            45789999999999999999999999999998877665543

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF14516 AAA_35: AAA-like domain

Probab=97.06  E-value=0.03  Score=54.30  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES   59 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~   59 (337)
                      +..-+.++||..+|||++...+.+.+   |...+.++...+.+
T Consensus        30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~   72 (331)
T PF14516_consen   30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGS   72 (331)
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCC
Confidence            35578899999999999998886654   67778887776544

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.06  E-value=0.0013  Score=58.33  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++....++|.||+|+|||++.++++....
T Consensus        22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          22 VEARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34457899999999999999999988763

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.04  E-value=0.00086  Score=64.09  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      +.+.|..|++.|++|||||++|..+|+.++.+. .++.
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~-vi~~  124 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS-VIGT  124 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE-EEec
Confidence            556789999999999999999999999999873 3443

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.02  E-value=0.0039  Score=53.97  Aligned_cols=23  Identities=26%  Similarity=0.161  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+.++++||.|+|||++.++++-
T Consensus        21 ~~~~~i~G~NgsGKS~~l~~i~~   43 (162)
T cd03227          21 GSLTIITGPNGSGKSTILDAIGL   43 (162)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999844

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.02  E-value=0.001  Score=65.52  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .....++|.||+|+||||++..+|..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999998764

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.02  E-value=0.00097  Score=63.82  Aligned_cols=70  Identities=13%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecC-Ccccc--C-----CCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELES--G-----NAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~-s~l~~--~-----~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ..+.+++.||+|+|||+++++++....     ..++.+.. .++.-  .     ..++......++.+.+    -+..|.
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD  206 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPD  206 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence            457899999999999999999998762     22333321 12110  0     0111111223444444    678999


Q ss_pred             EEEeccc
Q 019694           87 CLMINDL   93 (337)
Q Consensus        87 Il~IDEi   93 (337)
                      .|++.|+
T Consensus       207 ~iivGEi  213 (299)
T TIGR02782       207 RIIVGEV  213 (299)
T ss_pred             EEEEecc
Confidence            9999998

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.01  E-value=0.0012  Score=64.20  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=45.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEe-cCCcccc------------C-CCCChHHHHHHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELES------------G-NAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~v-s~s~l~~------------~-~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      +..+.||+.|++|+|||++.+++.....-  .++.+ +..++.-            . ..|...-...++.+.+    -+
T Consensus       158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR  233 (332)
T PRK13900        158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LR  233 (332)
T ss_pred             HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hc
Confidence            34678999999999999999999987753  22322 1112210            0 0111111233444444    68


Q ss_pred             cCceEEEecccc
Q 019694           83 GKMCCLMINDLD   94 (337)
Q Consensus        83 ~~p~Il~IDEiD   94 (337)
                      ..|..|++.|+-
T Consensus       234 ~~PD~IivGEiR  245 (332)
T PRK13900        234 LRPDRIIVGELR  245 (332)
T ss_pred             cCCCeEEEEecC
Confidence            899999999983

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=97.01  E-value=0.00025  Score=64.33  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++++|+||+|||++.+.++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            4789999999999999998885

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.01  E-value=0.0044  Score=63.48  Aligned_cols=82  Identities=10%  Similarity=0.031  Sum_probs=52.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH-h---CCCcEEecCCccccC--------------C------------CCC-
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG--------------N------------AGE-   64 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~-l---~~~~i~vs~s~l~~~--------------~------------~Ge-   64 (337)
                      .|++....+||+|+||+|||+|+..++.+ +   |-+.+.++..+-...              +            ... 
T Consensus        26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~  105 (509)
T PRK09302         26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS  105 (509)
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence            37888899999999999999999977543 2   555555544331000              0            000 


Q ss_pred             -----hHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           65 -----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        65 -----~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                           ....+..++......+...++..|+||-+..+.
T Consensus       106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~  143 (509)
T PRK09302        106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF  143 (509)
T ss_pred             cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence                 001234455555566677889999999987654

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=97.00  E-value=0.0028  Score=65.83  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEEecCCccccCCCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAG   63 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~vs~s~l~~~~~G   63 (337)
                      -.+.+..|.|+|+||+|||++|+++|..++.    +++.+++..+.....|
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g  438 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS  438 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC
Confidence            3455778999999999999999999999875    3566666555433333

>PRK14529 adenylate kinase; Provisional

Probab=97.00  E-value=0.00059  Score=62.61  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG   60 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~   60 (337)
                      |+|.||||+||||+++.+|+.++++.+  +.+++...
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~   37 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE   37 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence            788999999999999999999997654  44555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.99  E-value=0.017  Score=62.78  Aligned_cols=35  Identities=17%  Similarity=-0.058  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      ...+-++++||+|.|||+++...+...+ ++..++.
T Consensus        30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l   64 (903)
T PRK04841         30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL   64 (903)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence            3456799999999999999999887776 5555544

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00076  Score=62.54  Aligned_cols=48  Identities=29%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             hhHHHHHhhhhc---CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694            3 KLVVHITKNFMS---LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus         3 k~~~~i~k~~l~---~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |.-...++.|+-   ..+.+.|+.|||=|+||+|||++|.-+|..+|+..+
T Consensus        68 k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v  118 (299)
T COG2074          68 KGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV  118 (299)
T ss_pred             hcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence            344455666654   457788999999999999999999999999999744

>PTZ00202 tuzin; Provisional

Probab=96.98  E-value=0.005  Score=61.82  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=34.6

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      +.......|+.+.|+||+|||||++++.+...++...+.++..
T Consensus       278 L~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr  320 (550)
T PTZ00202        278 LRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR  320 (550)
T ss_pred             HhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence            3334555778999999999999999999999998776666554

>PTZ00035 Rad51 protein; Provisional

Probab=96.98  E-value=0.0045  Score=60.25  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|++.-..+.|+||||+|||+|+..++..
T Consensus       113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~  141 (337)
T PTZ00035        113 GGIETGSITELFGEFRTGKTQLCHTLCVT  141 (337)
T ss_pred             CCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence            37888888999999999999999988753

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.97  E-value=0.0036  Score=55.31  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC---CCCCh----HHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---NAGEP----AKLIRQRYREA   76 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~---~~Ge~----~~~ir~~f~~A   76 (337)
                      ..|..|.|+|.+|+||||+|.++++.|   |.+.+.+++..+..+   ..|=+    ..++|.+-..|
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA   88 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA   88 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence            456788999999999999999998875   889999999887443   33322    23455555555

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=96.97  E-value=0.0062  Score=53.72  Aligned_cols=73  Identities=14%  Similarity=0.271  Sum_probs=47.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEe---cC----Cccc-------------c--CCCC----ChHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMM---SA----GELE-------------S--GNAG----EPAKLIRQRY   73 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v---s~----s~l~-------------~--~~~G----e~~~~ir~~f   73 (337)
                      -|.+|+++|.|||+.|-.+|-.+   |..++.+   .+    ++..             .  .|..    +.....++.+
T Consensus         7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~   86 (173)
T TIGR00708         7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW   86 (173)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence            46688999999999999886553   5554322   22    2210             0  0111    1124566788


Q ss_pred             HHHHHHHHhcCceEEEeccccc
Q 019694           74 REAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      ..|.+.+..+.-.+|++|||-.
T Consensus        87 ~~a~~~l~~~~~DlvVLDEi~~  108 (173)
T TIGR00708        87 QHAKEMLADPELDLVLLDELTY  108 (173)
T ss_pred             HHHHHHHhcCCCCEEEehhhHH
Confidence            8887888888899999999853

Alternate name: corrinoid adenosyltransferase.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.97  E-value=0.0014  Score=62.92  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=44.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec-CCccccC----------C--CCChHHHHHHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG----------N--AGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs-~s~l~~~----------~--~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      ++....+++.||+|+|||+++++++..+.-  ..+.+. ..++.-.          .  .+...-.+.+.+..+    -+
T Consensus       141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----Lr  216 (308)
T TIGR02788       141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----LR  216 (308)
T ss_pred             hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----hc
Confidence            345678999999999999999999887632  222221 1111100          0  011111233444444    57


Q ss_pred             cCceEEEecccc
Q 019694           83 GKMCCLMINDLD   94 (337)
Q Consensus        83 ~~p~Il~IDEiD   94 (337)
                      ..|.+|++||+-
T Consensus       217 ~~pd~ii~gE~r  228 (308)
T TIGR02788       217 MRPDRIILGELR  228 (308)
T ss_pred             CCCCeEEEeccC
Confidence            899999999984

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.96  E-value=0.0071  Score=60.21  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=46.4

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ......++ .++|+||-+||||++.+.+.+...-.++.++.-++......-  ......+..+    .......||||||
T Consensus        31 ~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~----~~~~~~yifLDEI  103 (398)
T COG1373          31 KKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIEL----KEREKSYIFLDEI  103 (398)
T ss_pred             hhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHh----hccCCceEEEecc
Confidence            34444555 899999999999999988888775555555554443321111  1111222222    2225679999999


Q ss_pred             ccc
Q 019694           94 DAG   96 (337)
Q Consensus        94 D~l   96 (337)
                      ...
T Consensus       104 q~v  106 (398)
T COG1373         104 QNV  106 (398)
T ss_pred             cCc
Confidence            753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.96  E-value=0.0045  Score=62.27  Aligned_cols=38  Identities=18%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      ..|..++++|++|+|||+++..+|..+   |..+..++...
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~  133 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT  133 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence            358899999999999999999998876   55566665543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.96  E-value=0.0057  Score=61.29  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      .|..|+|.|++|+||||++..+|..+   |..+..+++..
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~  138 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT  138 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence            47889999999999999999998766   66667666643

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK05439 pantothenate kinase; Provisional

Probab=96.95  E-value=0.0011  Score=63.63  Aligned_cols=39  Identities=33%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.+.|+.......|..|.+.|+||+||||+|+.++..++
T Consensus        73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444555555667899999999999999999999988764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.94  E-value=0.0041  Score=58.72  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=28.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      ..|+.++|.||||+|||+++..+|..+   |..+..+++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            457889999999999999999888765   5555555543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10867 signal recognition particle protein; Provisional

Probab=96.92  E-value=0.0033  Score=63.12  Aligned_cols=38  Identities=18%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~   56 (337)
                      .+|..|++.||+|+||||++..+|..+    |..+..+++..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~  139 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV  139 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence            358899999999999999877777644    66666666653

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.92  E-value=0.0009  Score=63.59  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      .-+.+|+.|+||||||.+|-.+++.+|-  ||..++++++.+-....++. +.+.|+.+
T Consensus        65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEA-ltQAfRks  122 (454)
T KOG2680|consen   65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEA-LTQAFRKS  122 (454)
T ss_pred             cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHH-HHHHHHHh
Confidence            4688999999999999999999999984  89999999998876666644 45777776

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.92  E-value=0.0015  Score=61.16  Aligned_cols=72  Identities=13%  Similarity=0.123  Sum_probs=42.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEec-CCccccCCC-------CChHHHHHHHHHHHHHHHHhcCceE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs-~s~l~~~~~-------Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      +....+++.||+|+|||++.+++..++.-.   ++.+. ..++.-...       ........+.+..+    -+..|.+
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~  200 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV  200 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred             ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence            446789999999999999999999887544   33332 222211100       01111223444444    6788999


Q ss_pred             EEecccc
Q 019694           88 LMINDLD   94 (337)
Q Consensus        88 l~IDEiD   94 (337)
                      |+|.||-
T Consensus       201 iiigEiR  207 (270)
T PF00437_consen  201 IIIGEIR  207 (270)
T ss_dssp             EEESCE-
T ss_pred             ccccccC
Confidence            9999994

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=96.91  E-value=0.015  Score=65.86  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=96.5

Q ss_pred             HHhhhhcC----CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc--cCCCCChH----H---HHHHHHH
Q 019694            8 ITKNFMSL----PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPA----K---LIRQRYR   74 (337)
Q Consensus         8 i~k~~l~~----~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~--~~~~Ge~~----~---~ir~~f~   74 (337)
                      +.||||..    .+-..|  ||+.||.-+|||++...+|.+.|-.|+.++-.+.-  ..|+|...    .   .-..+.-
T Consensus       873 Vqkn~ln~~Ra~s~~~fP--~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLV  950 (4600)
T COG5271         873 VQKNYLNTMRAASLSNFP--LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLV  950 (4600)
T ss_pred             HHHHHHHHHHHHhhcCCc--EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHH
Confidence            55777762    233445  89999999999999999999999999999887642  23444311    0   0012222


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCCC--
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS--  151 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~~--  151 (337)
                      +|   +++  .--|++||+.-...             -+...|-.++|+-...-+|..... .+.+...+.+|-|-|-  
T Consensus       951 eA---lR~--GyWIVLDELNLApT-------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Y 1012 (4600)
T COG5271         951 EA---LRR--GYWIVLDELNLAPT-------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGY 1012 (4600)
T ss_pred             HH---Hhc--CcEEEeeccccCcH-------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccc
Confidence            23   222  34688999853211             233455566664433333433211 2344555666666433  


Q ss_pred             ----CCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhh
Q 019694          152 ----TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI  205 (337)
Q Consensus       152 ----~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl  205 (337)
                          .|..|++-  ||-..++- -..++...|++.   ...+.+.--.++++-|.+-.+
T Consensus      1013 gGRK~LSrAFRN--RFlE~hFddipedEle~ILh~---rc~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271        1013 GGRKGLSRAFRN--RFLEMHFDDIPEDELEEILHG---RCEIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred             cchHHHHHHHHh--hhHhhhcccCcHHHHHHHHhc---cCccCHHHHHHHHHHHHHhhh
Confidence                24455542  55443333 345556666643   335666555666665555443

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.91  E-value=0.0017  Score=64.57  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ..+-|.|.|++|||||||++++|+.+|...+.
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            35679999999999999999999999887553

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=96.91  E-value=0.053  Score=54.14  Aligned_cols=64  Identities=17%  Similarity=0.253  Sum_probs=40.5

Q ss_pred             EEEEeCCCC---CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCC----------------------CCCHHHHHH
Q 019694          143 IIVTGNDFS---TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----------------------NVADDDIVK  195 (337)
Q Consensus       143 vI~TTN~~~---~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~----------------------~l~~~~la~  195 (337)
                      ||+.|++..   .|..+|  |.|.=+.|.+  .+.+.-...+..++...                      ..+..++..
T Consensus       186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~  263 (431)
T PF10443_consen  186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE  263 (431)
T ss_pred             EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence            555565544   344454  6676677777  66677777766666543                      124467788


Q ss_pred             HhcCCCch--hhHhH
Q 019694          196 LVDTFPGQ--SIDFF  208 (337)
Q Consensus       196 l~~gf~ga--dl~~~  208 (337)
                      ..+-+-|+  ||+++
T Consensus       264 ~i~~LGGRltDLe~l  278 (431)
T PF10443_consen  264 CIEPLGGRLTDLEFL  278 (431)
T ss_pred             HHHHcCCcHHHHHHH
Confidence            88888887  66654

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.90  E-value=0.0023  Score=68.03  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=23.6

Q ss_pred             CCCCCcE--EEEEcCCCchHHHHHHHHHHHh
Q 019694           17 NIKVPLI--LGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        17 g~~~p~g--iLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++.|.|  |.+.|+.|||||||+|.+..-.
T Consensus       493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             eEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4455555  9999999999999999997643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.90  E-value=0.0033  Score=54.75  Aligned_cols=28  Identities=32%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++...+.|.||+|+|||+|.+.++...
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3455678999999999999999998875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=96.89  E-value=0.0027  Score=56.10  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ...++||.|+|||.+..|++-.++.
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~~~~~~   48 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAICFVLGG   48 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCc
Confidence            6789999999999999999776654

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK07667 uridine kinase; Provisional

Probab=96.89  E-value=0.0019  Score=57.57  Aligned_cols=37  Identities=24%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL   57 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l   57 (337)
                      +..|.|.|+||+|||++|+.+++.++   .++..++..++
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            37889999999999999999999763   56666666554

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.89  E-value=0.0011  Score=55.25  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=25.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      +....|+|+|+=|+|||+++|.+++.+|..-...|
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~S   47 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTS   47 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCC
Confidence            55578999999999999999999999998653333

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.88  E-value=0.022  Score=52.90  Aligned_cols=137  Identities=13%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC---cEEecCCccccC---CC-----C------ChHHHHHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG---NA-----G------EPAKLIRQRYREAADII   80 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~---~i~vs~s~l~~~---~~-----G------e~~~~ir~~f~~A~~~~   80 (337)
                      .+.|--+.+.|++|||||+++..+...+.-.   ++.+.. .....   ++     .      +.+..+...-....+..
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~   88 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI   88 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence            4556678899999999999999988776532   233322 21111   10     0      01111111111111122


Q ss_pred             H------hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           81 K------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        81 ~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      +      ...+++|+|||+-.        .  ....+.+.+++    .            ....-++-+|..+.....||
T Consensus        89 ~k~~~~k~~~~~LiIlDD~~~--------~--~~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~lp  142 (241)
T PF04665_consen   89 KKSPQKKNNPRFLIILDDLGD--------K--KLKSKILRQFF----N------------NGRHYNISIIFLSQSYFHLP  142 (241)
T ss_pred             hhhcccCCCCCeEEEEeCCCC--------c--hhhhHHHHHHH----h------------cccccceEEEEEeeecccCC
Confidence            2      13378999999621        0  01112232222    2            12345688999999999999


Q ss_pred             chhccCCCceEEEeC-CCHHHHHHHHHHhc
Q 019694          155 APLIRDGRMEKFYWA-PTREDRIGVCKGIF  183 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~  183 (337)
                      +.++.  -.+.++.. -+..+...|++.+.
T Consensus       143 ~~iR~--n~~y~i~~~~s~~dl~~i~~~~~  170 (241)
T PF04665_consen  143 PNIRS--NIDYFIIFNNSKRDLENIYRNMN  170 (241)
T ss_pred             HHHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence            98743  56666655 45555555555443

This is thought to be an ATPase involved in viral DNA packaging [].

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=96.88  E-value=0.0016  Score=57.53  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES   59 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~   59 (337)
                      +.|+|.|+|-+|||++|+++.+.+..+++.++...+..
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~   39 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD   39 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence            57999999999999999999999999999888776644

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=96.88  E-value=0.002  Score=71.79  Aligned_cols=174  Identities=11%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             CCCcEEEEEcCCCchHHH-HHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-----------hcCce
Q 019694           19 KVPLILGIWGGKGQGKSF-QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~-lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~   86 (337)
                      ..-+++++.||||+|||+ ++-++-+++...++.++-+.-.     .++..++ ..++--+-..           .-+.-
T Consensus      1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245        1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred             hccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCcchhhe
Confidence            345799999999999998 4668888888888877765321     1111221 1221100000           11235


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCCCC-----cch
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFSTL-----YAP  156 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~~l-----d~a  156 (337)
                      |||.|||. +-..+.-..+      .+.-+|..++      ...|+|...     ...++++.+++|-+.+.     +..
T Consensus      1566 VLFcDeIn-Lp~~~~y~~~------~vI~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245        1566 VLFCDEIN-LPYGFEYYPP------TVIVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred             EEEeeccC-CccccccCCC------ceEEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence            89999998 3211110011      1111221222      223677653     35688999999976543     344


Q ss_pred             hccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhh
Q 019694          157 LIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR  214 (337)
Q Consensus       157 LlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~  214 (337)
                      ++|   --.++++  |.......|..+++...-+-.++...+++.+..++.+++...+++
T Consensus      1633 f~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245        1633 FIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred             Hhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554   3345555  999999999888887766666777778888888888777666654

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=96.87  E-value=0.017  Score=56.70  Aligned_cols=89  Identities=16%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------------CCCCChHH----H-
Q 019694            9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGEPAK----L-   68 (337)
Q Consensus         9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------------~~~Ge~~~----~-   68 (337)
                      .+.++-...-..|..|.|||..|||||.+.+.+.++++.+.+.+++-+...               .+.|..-+    + 
T Consensus        18 L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~   97 (438)
T KOG2543|consen   18 LKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENF   97 (438)
T ss_pred             HHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHH
Confidence            344444344478999999999999999999999999999988887765321               11111111    1 


Q ss_pred             --HHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           69 --IRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        69 --ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                        ....|.+...+-+..+...|++|.+|.+-
T Consensus        98 ~d~i~~l~q~~~~t~~d~~~~liLDnad~lr  128 (438)
T KOG2543|consen   98 SDFIYLLVQWPAATNRDQKVFLILDNADALR  128 (438)
T ss_pred             HHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence              11233332222234567899999999874

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.87  E-value=0.0016  Score=62.98  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=43.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEec-CCccccC------CCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs-~s~l~~~------~~Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      ..+.+|+.|++|+|||++.+++.....     ..++.+. ..++.-.      +.....-....+.+.+    -+..|..
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~  218 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDR  218 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCE
Confidence            356899999999999999999988762     2333332 2222110      0011111123344444    6789999


Q ss_pred             EEeccc
Q 019694           88 LMINDL   93 (337)
Q Consensus        88 l~IDEi   93 (337)
                      |++.|+
T Consensus       219 IivGEi  224 (323)
T PRK13833        219 IIVGEV  224 (323)
T ss_pred             EEEeec
Confidence            999998

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=96.86  E-value=0.0013  Score=67.84  Aligned_cols=162  Identities=15%  Similarity=0.257  Sum_probs=95.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccc-----cCCCCChHHHHHHHHHHHHH-----HHHhcCceEEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELE-----SGNAGEPAKLIRQRYREAAD-----IIKKGKMCCLMI   90 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~-----~~~~Ge~~~~ir~~f~~A~~-----~~~~~~p~Il~I   90 (337)
                      -+||.|.|||||-.+++++-+...  -+|+-+++..+-     +.++|-.    ...|..|..     .+.......+|+
T Consensus       338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~----~GafTga~~kG~~g~~~~A~gGtlFl  413 (606)
T COG3284         338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV----AGAFTGARRKGYKGKLEQADGGTLFL  413 (606)
T ss_pred             CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC----ccccccchhccccccceecCCCccHH
Confidence            389999999999999999966543  478988887652     2222221    122222210     011224467999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE-----
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-----  165 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~-----  165 (337)
                      |||-.+-             -.++.-|+.++..-..+-++|.   ...-.|-||+||++.=   ..|.+-|||-.     
T Consensus       414 deIgd~p-------------~~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyr  474 (606)
T COG3284         414 DEIGDMP-------------LALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYR  474 (606)
T ss_pred             HHhhhch-------------HHHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHH
Confidence            9995432             1344566667765444445554   2334678999998742   44778888753     


Q ss_pred             ----EEeCCCHHHH---HHHHHHhccC-----CCCCHHHHHHH-hcCCCchhhHh
Q 019694          166 ----FYWAPTREDR---IGVCKGIFRN-----DNVADDDIVKL-VDTFPGQSIDF  207 (337)
Q Consensus       166 ----~i~~P~~~~R---~~Il~~~~~~-----~~l~~~~la~l-~~gf~gadl~~  207 (337)
                          .|.+|...+|   ...+..++..     ..++.+.++.+ ...++|..-+.
T Consensus       475 L~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel  529 (606)
T COG3284         475 LNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIREL  529 (606)
T ss_pred             hcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHH
Confidence                3334877776   3334444432     25555655554 56777765443

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=96.85  E-value=0.0052  Score=58.72  Aligned_cols=68  Identities=18%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      ..+..+.++|+|+.|+|||++.+.+.+-+|-....+..+...... ++.      .|..|    .-....+++.||++.
T Consensus        72 ~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~------~f~~a----~l~gk~l~~~~E~~~  139 (304)
T TIGR01613        72 NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH------RFGLA----RLEGKRAVIGDEVQK  139 (304)
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC------Cchhh----hhcCCEEEEecCCCC
Confidence            467789999999999999999999988888654333332222221 111      24444    434556888899874

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.84  E-value=0.0045  Score=60.36  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+..-..++++|+||+|||++|..+|..
T Consensus       119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~  146 (342)
T PLN03186        119 GIETGSITEIYGEFRTGKTQLCHTLCVT  146 (342)
T ss_pred             CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence            6777788899999999999999987743

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.0023  Score=65.14  Aligned_cols=71  Identities=20%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      ..+||.++-+.||||||||+|.+++-..+-        -++-.+++..-.-.+. +...-+.++...|    +-....+|
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTfl-Ecp~Dl~~miDva----KIaDLVlL  139 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFL-ECPSDLHQMIDVA----KIADLVLL  139 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEE-eChHHHHHHHhHH----HhhheeEE
Confidence            567899999999999999999999877652        2333333322111111 2234455666666    55566677


Q ss_pred             Eecc
Q 019694           89 MIND   92 (337)
Q Consensus        89 ~IDE   92 (337)
                      +||-
T Consensus       140 lIdg  143 (1077)
T COG5192         140 LIDG  143 (1077)
T ss_pred             Eecc
Confidence            7664

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.83  E-value=0.0043  Score=59.85  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=24.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+.+-..+.++||||+|||+|+..+|.
T Consensus        92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~  118 (316)
T TIGR02239        92 GIETGSITEIFGEFRTGKTQLCHTLAV  118 (316)
T ss_pred             CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence            778888899999999999999998875

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.0067  Score=56.24  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      --|-|.||+|||||||.+.||.-.
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            457899999999999999998754

>TIGR00235 udk uridine kinase

Probab=96.83  E-value=0.0016  Score=58.68  Aligned_cols=27  Identities=33%  Similarity=0.717  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +..|.|.||+|+|||||+++++..+..
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456779999999999999999998763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=96.82  E-value=0.0026  Score=65.33  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=41.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      ..|..|+++|+||+||||+|+.++...++.  .++...+     |.    .......|.+.+..+.+.||
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVVI  425 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCAI  425 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEEE
Confidence            467899999999999999999999987654  4454433     21    12344556666677776443

Note that the EC number for the kinase function is: 2.7.1.78

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.81  E-value=0.0011  Score=59.15  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .|.|.||+|+||||+|+.++..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999999987

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.81  E-value=0.0058  Score=51.57  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=21.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      +.|.||+|+|||++++.+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCcc
Confidence            6789999999999999999986543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=96.81  E-value=0.0012  Score=58.05  Aligned_cols=32  Identities=38%  Similarity=0.634  Sum_probs=25.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |+|+|+||+|||++++.+++ +|++++  ++.++.
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~   33 (179)
T cd02022           2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA   33 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence            78999999999999999998 776554  444443

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.81  E-value=0.0019  Score=61.57  Aligned_cols=39  Identities=26%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.+.|+.....+.|..|.|.||+|+||||+|+.+...+.
T Consensus        49 ~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        49 VLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             HHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445566555567899999999999999999998877664

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.80  E-value=0.0018  Score=60.84  Aligned_cols=72  Identities=14%  Similarity=0.182  Sum_probs=42.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC---CCcEEec-CCccccCCCCCh--HHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMS-AGELESGNAGEP--AKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs-~s~l~~~~~Ge~--~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      .+++.||+|+||||+.+++...+.   ..++.+. ..++.-+.+-..  .......|..+...+-+..|.+|+++||.
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR  159 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR  159 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence            489999999999999999977764   2344432 222211100000  00001134444444467899999999994

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.79  E-value=0.0014  Score=57.94  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~   58 (337)
                      |++.|+||+|||++|+.+++.++   .+...++..++.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            78999999999999999999874   555666655544

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.79  E-value=0.0013  Score=58.25  Aligned_cols=28  Identities=14%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      ..+.|.||+|+||||+++.++..++..+
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~   30 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQL   30 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence            4688999999999999999999887654

>PLN02165 adenylate isopentenyltransferase

Probab=96.78  E-value=0.0015  Score=63.37  Aligned_cols=34  Identities=21%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      .+.+.|.||+|+|||+||..+|..++..++..+.
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs   76 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK   76 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence            3468999999999999999999999877665543

>PRK13808 adenylate kinase; Provisional

Probab=96.78  E-value=0.0012  Score=64.12  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      |+|+||||+|||++++.||+.+++.  .++.++++
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL   35 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML   35 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence            7899999999999999999999864  44545443

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.78  E-value=0.0049  Score=58.46  Aligned_cols=37  Identities=16%  Similarity=0.282  Sum_probs=28.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh----C-CCcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l----~-~~~i~vs~s~   56 (337)
                      .++.++|.||+|+||||++..+|..+    | ..+..++...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            46789999999999999999988765    3 4555665543

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.78  E-value=0.0019  Score=63.08  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec-CCccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG------------NAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs-~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      ++..+.||+.||+|+||||++++++.....  .++.+. ..++.-.            ..|...-...++++.+    -+
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR  234 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LR  234 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hc
Confidence            345678999999999999999999987643  223221 1122100            0011111233444444    67


Q ss_pred             cCceEEEeccc
Q 019694           83 GKMCCLMINDL   93 (337)
Q Consensus        83 ~~p~Il~IDEi   93 (337)
                      ..|..|++.|+
T Consensus       235 ~~pD~IivGEi  245 (344)
T PRK13851        235 MRPDRILLGEM  245 (344)
T ss_pred             CCCCeEEEEee
Confidence            79999999998

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.78  E-value=0.002  Score=57.48  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=25.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++...|.|.||+|+|||+|++.++..+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3567899999999999999999999876

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.77  E-value=0.0012  Score=58.92  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh-CCCcE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM-GINPI   50 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l-~~~~i   50 (337)
                      |.+.|+||+|||++|+.+++.+ ++.++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~~~~~i   29 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILPNCCVI   29 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence            6789999999999999999998 34333

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=96.77  E-value=0.0016  Score=62.53  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      .|+.|+|.||+|+|||++|..+|++++..++..+.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds   37 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS   37 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence            35789999999999999999999999887766554

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.76  E-value=0.0026  Score=62.44  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ..|..+.|.||.|||||++.+++.+.+..
T Consensus        20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~   48 (364)
T PF05970_consen   20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS   48 (364)
T ss_pred             cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence            56778999999999999999999887743

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.012  Score=58.15  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=81.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCcccc------CCCC--------ChHHHHHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELES------GNAG--------EPAKLIRQRYREAADII   80 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~------~~~G--------e~~~~ir~~f~~A~~~~   80 (337)
                      |+-+-..+|+-|.||.|||||.-.++..+-  ..++++++.+=..      ...|        -.+.++..+....    
T Consensus        89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l----  164 (456)
T COG1066          89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL----  164 (456)
T ss_pred             CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----
Confidence            444556688889999999999888877653  2688888864211      1111        1223344444444    


Q ss_pred             HhcCceEEEecccccccccCCCCcccch-hhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc-chhc
Q 019694           81 KKGKMCCLMINDLDAGAGRMGGTTQYTV-NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY-APLI  158 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~-~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld-~aLl  158 (337)
                      ...+|.+++||-|-.+....-.+...++ ..+.....|+++..             ...--+++++--.-.-.|- |-++
T Consensus       165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK-------------~~~i~~fiVGHVTKeG~IAGPrvL  231 (456)
T COG1066         165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK-------------TKNIAIFIVGHVTKEGAIAGPRVL  231 (456)
T ss_pred             HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH-------------HcCCeEEEEEEEcccccccCchhe
Confidence            7889999999999877643321222222 23455556665544             1122233333322222222 2222


Q ss_pred             cCCCceEEEeC-CCHHHHHHHHHHh
Q 019694          159 RDGRMEKFYWA-PTREDRIGVCKGI  182 (337)
Q Consensus       159 R~gR~d~~i~~-P~~~~R~~Il~~~  182 (337)
                       -+-.|-.+++ -++.....|++.+
T Consensus       232 -EHmVDtVlyFEGd~~~~~RiLR~v  255 (456)
T COG1066         232 -EHMVDTVLYFEGDRHSRYRILRSV  255 (456)
T ss_pred             -eeeeeEEEEEeccCCCceeeeehh
Confidence             2445666666 5555566665433

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.75  E-value=0.004  Score=52.86  Aligned_cols=73  Identities=15%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCc---cccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE---LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~---l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      +++...+.|.||+|+|||+|.++++.....  .-+.+++..   +...+.+..  .-+-.+..|    -...|.++++||
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~--~~rv~lara----l~~~p~illlDE   96 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGE--KMRLALAKL----LLENPNLLLLDE   96 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHH--HHHHHHHHH----HhcCCCEEEEeC
Confidence            345567899999999999999999886532  112222110   001111111  111123333    356899999999


Q ss_pred             cccc
Q 019694           93 LDAG   96 (337)
Q Consensus        93 iD~l   96 (337)
                      -.+.
T Consensus        97 P~~~  100 (144)
T cd03221          97 PTNH  100 (144)
T ss_pred             CccC
Confidence            7643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=96.75  E-value=0.0012  Score=67.91  Aligned_cols=145  Identities=16%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHH-----HHHHHHHHHHHHhcCceEEEecccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~i-----r~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      ..|||.|-||||||.+.|.+++-....++..--+   +.-+|-+....     ++---+| +.+--....|.+|||+|++
T Consensus       483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v~KdPvtrEWTLEa-GALVLADkGvClIDEFDKM  558 (854)
T KOG0477|consen  483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYVRKDPVTREWTLEA-GALVLADKGVCLIDEFDKM  558 (854)
T ss_pred             eeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEEeeCCccceeeecc-CeEEEccCceEEeehhhhh
Confidence            4599999999999999999988665444432111   11111110000     0000011 0001124568899999987


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchhccCCCc
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGRM  163 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~gR~  163 (337)
                      -...    ..+....+-+|.+ .       ++-.|. ......+..||+|+|-..             .|-.|++.  ||
T Consensus       559 ndqD----RtSIHEAMEQQSI-S-------ISKAGI-VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RF  623 (854)
T KOG0477|consen  559 NDQD----RTSIHEAMEQQSI-S-------ISKAGI-VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RF  623 (854)
T ss_pred             cccc----cchHHHHHHhcch-h-------hhhhhH-HHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--hc
Confidence            5211    1112222222111 0       000010 012245667899988521             35566664  89


Q ss_pred             eEEEeC-----CCHHHHHH--HHHHhccC
Q 019694          164 EKFYWA-----PTREDRIG--VCKGIFRN  185 (337)
Q Consensus       164 d~~i~~-----P~~~~R~~--Il~~~~~~  185 (337)
                      |..--+     |-.+++.+  ++..|.+.
T Consensus       624 DiLcVvkD~vd~~~De~lA~fVV~Sh~r~  652 (854)
T KOG0477|consen  624 DILCVVKDTVDPVQDEKLAKFVVGSHVRH  652 (854)
T ss_pred             ceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence            987766     77777644  35666543

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.75  E-value=0.0011  Score=57.92  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +.++|.||+|+|||++++.+++....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcc
Confidence            46899999999999999999997654

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.74  E-value=0.0013  Score=57.40  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .++|.||||+|||+++++++..++.
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            5789999999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.73  E-value=0.0064  Score=58.31  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      .|+.++|.||.++|||-||-.+|++++.++++++.-.+.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY   40 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY   40 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence            478899999999999999999999999999988766554

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.73  E-value=0.0058  Score=62.32  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=32.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      .|+.....+|+.||||+|||+|+-.++.+.   |-+.+.++..+
T Consensus       258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE  301 (484)
T TIGR02655       258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE  301 (484)
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence            478888899999999999999999887654   55566665543

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR00017 cmk cytidylate kinase

Probab=96.73  E-value=0.0016  Score=59.42  Aligned_cols=30  Identities=33%  Similarity=0.467  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      +..|.|.||+|+|||++++.+|+++++.++
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~   31 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYL   31 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            346889999999999999999999998765

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.72  E-value=0.018  Score=52.79  Aligned_cols=25  Identities=24%  Similarity=-0.051  Sum_probs=21.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .....++|.||.|+|||++.+.++.
T Consensus        29 ~~g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          29 EGGYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=96.71  E-value=0.00084  Score=67.57  Aligned_cols=138  Identities=20%  Similarity=0.267  Sum_probs=76.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHH------HHHHHHHHHhcCceEEEeccccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR------YREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~------f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      -.|+|.|-||+-||.|.+.|.+-.-...+....+   +.-+|-++.-+++.      ++-.  .+--....|..|||+|+
T Consensus       376 INicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGG--ALVLAD~GICCIDEfDK  450 (721)
T KOG0482|consen  376 INICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGG--ALVLADGGICCIDEFDK  450 (721)
T ss_pred             eeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccc--eEEEccCceEeehhhhh
Confidence            4689999999999999999988665555543222   12223322211110      0000  00012456888999999


Q ss_pred             ccccCCCCcccchhhH-hHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------CCcchhccCC
Q 019694           96 GAGRMGGTTQYTVNNQ-MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDG  161 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~-~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR~g  161 (337)
                      +....     .+.... +-+|+. .+..       .| .....+.+.-|++++|-..             .||+|||.  
T Consensus       451 M~e~D-----RtAIHEVMEQQTI-SIaK-------AG-I~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS--  514 (721)
T KOG0482|consen  451 MDESD-----RTAIHEVMEQQTI-SIAK-------AG-INTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--  514 (721)
T ss_pred             hhhhh-----hHHHHHHHHhhhh-hhhh-------hc-cccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--
Confidence            86321     111111 222222 1111       12 1223456778888888422             58999996  


Q ss_pred             CceEEEeC---CCHHHHHHHHH
Q 019694          162 RMEKFYWA---PTREDRIGVCK  180 (337)
Q Consensus       162 R~d~~i~~---P~~~~R~~Il~  180 (337)
                      |||....+   |+++.=..+.+
T Consensus       515 RFDll~Li~D~pdrd~D~~LA~  536 (721)
T KOG0482|consen  515 RFDLLWLIQDRPDRDNDLRLAQ  536 (721)
T ss_pred             hhhhhhhhccCCcccchHHHHH
Confidence            99986665   88876555533

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.0073  Score=65.16  Aligned_cols=137  Identities=18%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCceEE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL   88 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il   88 (337)
                      +.=+|.|.||+|||.++.-+|+..          +..++.++.+.+.  .++-|+-+..++.+.+++    . .+...||
T Consensus       209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL  284 (898)
T KOG1051|consen  209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL  284 (898)
T ss_pred             CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence            456889999999999999998864          2345666666443  346677777777777777    5 5677899


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----CCCcchhccCCCc
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRM  163 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----~~ld~aLlR~gR~  163 (337)
                      ||||+.-+.+..+  . +. ....+ ..|.-+               -.++.+.+|+||...     -.-||+|-|  ||
T Consensus       285 figelh~lvg~g~--~-~~-~~d~~-nlLkp~---------------L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw  342 (898)
T KOG1051|consen  285 FLGELHWLVGSGS--N-YG-AIDAA-NLLKPL---------------LARGGLWCIGATTLETYRKCIEKDPALER--RW  342 (898)
T ss_pred             EecceeeeecCCC--c-ch-HHHHH-HhhHHH---------------HhcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence            9999998875443  1 11 11111 112111               123447889877632     245899988  88


Q ss_pred             eEEEeC-CCHHHHHHHHHHhcc
Q 019694          164 EKFYWA-PTREDRIGVCKGIFR  184 (337)
Q Consensus       164 d~~i~~-P~~~~R~~Il~~~~~  184 (337)
                      +.+.-- |+.++-..|++..-.
T Consensus       343 ~l~~v~~pS~~~~~~iL~~l~~  364 (898)
T KOG1051|consen  343 QLVLVPIPSVENLSLILPGLSE  364 (898)
T ss_pred             ceeEeccCcccchhhhhhhhhh
Confidence            886665 998887667655443

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0011  Score=59.93  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      -|+|+|+||+|||++|+.+|+.+.
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHH
Confidence            378999999999999999999884

>COG0645 Predicted kinase [General function prediction only]

Probab=96.71  E-value=0.0044  Score=54.24  Aligned_cols=71  Identities=20%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCC--------------C-hHHHHHHHHHHHHHHHHhcCce
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG--------------E-PAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~G--------------e-~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ..+|++|-||+|||++|+.+++.+|.-.+..+  .+.....|              + +.+--..++..|..++..+.+.
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD--~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V   79 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD--VIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV   79 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehH--HHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            57899999999999999999999997655332  22111111              1 1222335677777777777775


Q ss_pred             EEEeccccccccc
Q 019694           87 CLMINDLDAGAGR   99 (337)
Q Consensus        87 Il~IDEiD~l~~~   99 (337)
                      |+     |+.+.+
T Consensus        80 Vl-----Da~~~r   87 (170)
T COG0645          80 VL-----DATFDR   87 (170)
T ss_pred             EE-----ecccCC
Confidence            54     665543

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=96.71  E-value=0.0017  Score=58.23  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      +.|.|+|++|+|||++++.+++.+|++++  ++.++
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~   35 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY   35 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence            35899999999999999999998887766  44444

>PRK08356 hypothetical protein; Provisional

Probab=96.70  E-value=0.0018  Score=57.72  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      ..|+|.||||+||||+|+.+. +.|+.  .++.++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~   37 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD   37 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence            458899999999999999995 56665  455554

>PRK13975 thymidylate kinase; Provisional

Probab=96.70  E-value=0.0021  Score=56.90  Aligned_cols=28  Identities=25%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      +-|.|.|++|+||||+++.+++.++..+
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~   30 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW   30 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            5688999999999999999999998643

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.69  E-value=0.0022  Score=57.06  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=26.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC-CCcEEecCCcc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGEL   57 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l   57 (337)
                      |.|.||+|+||||+++.++..++ .....++...+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~   36 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY   36 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            68999999999999999999873 33445554443

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=96.69  E-value=0.0021  Score=58.18  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=28.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      -.|..|.|+|++|||||++++.+++++|++++.
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vid   36 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVC   36 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence            356789999999999999999999999987543

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.68  E-value=0.0024  Score=61.74  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEe-cCCcccc--C----CCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMM-SAGELES--G----NAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~v-s~s~l~~--~----~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +..+.+++.|++|+|||+++++++.+.     ...++.+ +..++.-  .    +.........++++.+    -+..|.
T Consensus       146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD  221 (319)
T PRK13894        146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPD  221 (319)
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCC
Confidence            346789999999999999999998864     1122222 2222210  0    0001111234455555    678999


Q ss_pred             EEEeccc
Q 019694           87 CLMINDL   93 (337)
Q Consensus        87 Il~IDEi   93 (337)
                      .|++.|+
T Consensus       222 ~IivGEi  228 (319)
T PRK13894        222 RILVGEV  228 (319)
T ss_pred             EEEEecc
Confidence            9999998

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.68  E-value=0.0044  Score=57.71  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=33.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s   55 (337)
                      .|++.-..+|++|+||||||+++..++.+   .|.+++.++..
T Consensus        18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~   60 (260)
T COG0467          18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE   60 (260)
T ss_pred             CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            56788888999999999999999987554   37778888876

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.68  E-value=0.0017  Score=57.83  Aligned_cols=27  Identities=22%  Similarity=0.214  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .|+.|.|.||+|+|||+|++.+.++..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            478899999999999999999988763

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.66  E-value=0.0042  Score=54.95  Aligned_cols=75  Identities=15%  Similarity=0.101  Sum_probs=42.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCcc--ccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l--~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      +++-..+.|.||.|+|||||.+.++.....  .-+.+++..+  ......-+... ++...-|  .+-...|.++++||-
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq-~qrv~la--ral~~~p~lllLDEP   98 (177)
T cd03222          22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGE-LQRVAIA--AALLRNATFYLFDEP   98 (177)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHH-HHHHHHH--HHHhcCCCEEEEECC
Confidence            355567889999999999999999886532  1233332111  11110011111 2333333  113568999999997


Q ss_pred             cc
Q 019694           94 DA   95 (337)
Q Consensus        94 D~   95 (337)
                      -+
T Consensus        99 ts  100 (177)
T cd03222          99 SA  100 (177)
T ss_pred             cc
Confidence            54

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.66  E-value=0.0048  Score=60.06  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=38.2

Q ss_pred             CchhHHHHHhhhhc--CCCC-CCCcEEEEEcCCCchHHHHHHHHHHHhCC-CcEEecCC
Q 019694            1 MDKLVVHITKNFMS--LPNI-KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAG   55 (337)
Q Consensus         1 ~~k~~~~i~k~~l~--~~g~-~~p~giLL~GpPGtGKT~lA~aiA~~l~~-~~i~vs~s   55 (337)
                      ||+.+.+++. |++  ..|. .--+.++|.||+|+|||++++.+-+-+.. +++.+..+
T Consensus        66 ~~~~i~~lV~-~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~  123 (358)
T PF08298_consen   66 MEETIERLVN-YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGC  123 (358)
T ss_pred             cHHHHHHHHH-HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCC
Confidence            5666777766 555  2233 34578899999999999999999887653 55555433

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.66  E-value=0.0079  Score=58.12  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=28.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      +.|..++|.||+|+||||++..+|..+   +..+..+..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~  150 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG  150 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence            357889999999999999999998876   444554444

>PRK00023 cmk cytidylate kinase; Provisional

Probab=96.65  E-value=0.0018  Score=59.33  Aligned_cols=31  Identities=23%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      +..|.+.||||+|||++++.+|+++|++++.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~   34 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD   34 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            4578899999999999999999999987653

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.64  E-value=0.007  Score=56.64  Aligned_cols=83  Identities=14%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC---------CcEEecCCc-c--------ccCCCCChHH----------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGE-L--------ESGNAGEPAK----------   67 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~---------~~i~vs~s~-l--------~~~~~Ge~~~----------   67 (337)
                      .|++.-...=|+||||+|||.||-.+|-...+         ..+.++... +        ...+.-+..+          
T Consensus        33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~  112 (256)
T PF08423_consen   33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV  112 (256)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred             CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence            46766666779999999999999988765432         355555432 1        1111111111          


Q ss_pred             ----HHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           68 ----LIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        68 ----~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                          .+..+.......+...+-.+|+||-|-+++.
T Consensus       113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr  147 (256)
T PF08423_consen  113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR  147 (256)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred             CCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence                1112333333344466788999999988763

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PLN02199 shikimate kinase

Probab=96.63  E-value=0.0022  Score=61.11  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD  134 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD  134 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence            567999999999999999999999999988665

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.62  E-value=0.024  Score=52.13  Aligned_cols=21  Identities=19%  Similarity=0.097  Sum_probs=18.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -+|+||||+|||+|+..+|..
T Consensus         4 ~ll~g~~G~GKS~lal~la~~   24 (239)
T cd01125           4 SALVAPGGTGKSSLLLVLALA   24 (239)
T ss_pred             eEEEcCCCCCHHHHHHHHHHH
Confidence            478999999999999988764

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.62  E-value=0.01  Score=51.75  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +-..+.|.||.|+|||+|.+.++...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34568899999999999999998864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.61  E-value=0.0052  Score=53.61  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             EcCCCchHHHHHHHHHHHhC-CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694           27 WGGKGQGKSFQCELVFAKMG-INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        27 ~GpPGtGKT~lA~aiA~~l~-~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      .+.+||||||++.++++-++ +.-  +...++..+   ...+.+..    +.+++.+....+||+|
T Consensus         5 IAtiGCGKTTva~aL~~LFg~wgH--vQnDnI~~k---~~~~f~~~----~l~~L~~~~~~vViaD   61 (168)
T PF08303_consen    5 IATIGCGKTTVALALSNLFGEWGH--VQNDNITGK---RKPKFIKA----VLELLAKDTHPVVIAD   61 (168)
T ss_pred             ecCCCcCHHHHHHHHHHHcCCCCc--cccCCCCCC---CHHHHHHH----HHHHHhhCCCCEEEEe
Confidence            57899999999999999988 543  333334333   23233333    3333455556677766

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []

Probab=96.59  E-value=0.009  Score=57.04  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELV   41 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~ai   41 (337)
                      ..|.+..+|||.|||||.|.|.+
T Consensus        85 ~qP~I~~VYGPTG~GKSqLlRNL  107 (369)
T PF02456_consen   85 LQPFIGVVYGPTGSGKSQLLRNL  107 (369)
T ss_pred             CCceEEEEECCCCCCHHHHHHHh
Confidence            56889999999999999999976

During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.59  E-value=0.0061  Score=54.22  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.+.|.||+|+||||+++++-+..+
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~~   29 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDDK   29 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45678999999999999999988773

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=96.59  E-value=0.0071  Score=63.71  Aligned_cols=40  Identities=23%  Similarity=0.340  Sum_probs=33.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES   59 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~   59 (337)
                      .|.-|+++|.||+|||++|++++.++   +...+.+++..+..
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~  501 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH  501 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence            47889999999999999999999997   45677777766543

>PRK06761 hypothetical protein; Provisional

Probab=96.58  E-value=0.0026  Score=60.34  Aligned_cols=32  Identities=25%  Similarity=0.232  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ++.|.+.||||+||||+++.+++++....+.+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v   34 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV   34 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence            35789999999999999999999987654443

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.0011  Score=66.49  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .++|++||||||||++|+-+..
T Consensus       199 HnLl~~GpPGtGKTmla~Rl~~  220 (490)
T COG0606         199 HNLLLVGPPGTGKTMLASRLPG  220 (490)
T ss_pred             CcEEEecCCCCchHHhhhhhcc
Confidence            5799999999999999997744

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.56  E-value=0.0026  Score=56.12  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      ..+.|.||+|+|||+++++++..++..  .+++.
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd   35 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGD   35 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCc
Confidence            458899999999999999999998763  44444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
3t15_A	293	Structure Of Green-Type Rubisco Activase From Tobac		1e-142
3thg_A	107	Crystal Structure Of The Creosote Rubisco Activase		4e-42
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		6e-06

>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco Length = 293

Iteration: 1
 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/278 (86%), Positives = 252/278 (90%)
Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESG
Sbjct: 16  MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG 75
Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 76  NAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 135
Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 136 ADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 195
Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSK 240
           GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS 
Sbjct: 196 GIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSF 255
Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 278
           +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADK
Sbjct: 256 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293

>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase C-Domain Length = 107

Iteration: 1
 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 86/102 (84%)
Query: 171 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXX 230
           TREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW       
Sbjct: 6   TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 231 XXXKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 272
              K LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKR
Sbjct: 66  TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 18  IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
           IK P  + ++G  G GK+   + V A +G N I   A  +     GE A++IR+ +  A 
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 78  DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 137
              K+ + C + ++++DA  GR    ++ T  ++ +  TLM +       Q+ G  N  +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 138 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 170
                II+  N   TL   L+R GR+++    P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	1e-149
3thg_A	107	Ribulose bisphosphate carboxylase/oxygenase activ	8e-56
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-05
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	2e-04

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score =  419 bits (1080), Expect = e-149
 Identities = 245/278 (88%), Positives = 259/278 (93%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESG
Sbjct: 16  MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG 75

Query: 61  NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 120
           NAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNI
Sbjct: 76  NAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 135

Query: 121 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCK 180
           ADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 
Sbjct: 136 ADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCT 195

Query: 181 GIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK 240
           GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW+SG G+  IG  L+NS 
Sbjct: 196 GIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSF 255

Query: 241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADK 278
           +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADK
Sbjct: 256 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293

>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata} Length = 107

 Score =  176 bits (447), Expect = 8e-56
 Identities = 87/102 (85%), Positives = 94/102 (92%)

Query: 171 TREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 230
           TREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VGV 
Sbjct: 6   TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65

Query: 231 SIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 272
           +IGK LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKR
Sbjct: 66  TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 53/333 (15%), Positives = 95/333 (28%), Gaps = 102/333 (30%)

Query: 3   KLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKS-----------FQCELVFAKMGINPI 50
           +  + + +  + L P   V     I G  G GK+            QC++ F    I  +
Sbjct: 135 QPYLKLRQALLELRPAKNV----LIDGVLGSGKTWVALDVCLSYKVQCKMDF---KIFWL 187

Query: 51  MMSAGELESGNAGEPAKL----------IRQRYREAADIIKKGKMCCLMINDLDAGAGRM 100
            +        N   P  +          I   +   +D     K   L I+ + A   R+
Sbjct: 188 NL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRL 237

Query: 101 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE----NPRVPIIVTGNDFS---TL 153
             +  Y       N  L  +  N   VQ     N +     N    I++T         L
Sbjct: 238 LKSKPY------ENCLL--VLLN---VQ-----NAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 154 YAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKL----VDTFPGQSIDFFG 209
            A       ++      T ++     K +       D     L    + T P + +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDE----VKSLLL--KYLDCRPQDLPREVLTTNP-RRLSIIA 334

Query: 210 AL----RAR------VYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ----------P 249
                  A       V  D++   I      S+   L    E    F++          P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIE----SSL-NVL-EPAEYRKMFDRLSVFPPSAHIP 388

Query: 250 RMTMEKLLEYGNMIVQEQENVKRVQLADKYLSE 282
            + +  +  + ++I  +   V   +L    L E
Sbjct: 389 TILLSLI--WFDVIKSDVMVVV-NKLHKYSLVE 418

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 24/183 (13%)

Query: 31  GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 90
           G GK+     V  + G    +++  E+ S  AGE    +R+ + EA    +K     + I
Sbjct: 248 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFI 303

Query: 91  NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 150
           ++LDA A +    T   V  ++V + L+ + D        G+   ++   V ++   N  
Sbjct: 304 DELDAIAPK-REKTHGEVERRIV-SQLLTLMD--------GL---KQRAHVIVMAATNRP 350

Query: 151 STLYAPLIRDGRM--EKFYWAPTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSIDF 207
           +++   L R GR   E     P    R+ + +   +N  +ADD D+ ++ +   G     
Sbjct: 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG----H 406

Query: 208 FGA 210
            GA
Sbjct: 407 VGA 409

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	100.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.97
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.97
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.96
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.96
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.96
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.95
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.95
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.95
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.95
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.95
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.95
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.93
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.93
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.93
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.92
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.92
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.92
3thg_A	107	Ribulose bisphosphate carboxylase/oxygenase activ	99.92
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.91
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.89
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.85
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.8
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.8
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.76
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.74
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.74
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.71
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.68
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.67
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.67
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.6
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.6
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.59
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.58
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.57
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.57
3pvs_A	447	Replication-associated recombination protein A; ma	99.56
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.56
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.55
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.55
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.55
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.54
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.54
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.53
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.53
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.53
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.51
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.49
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.47
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.45
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.42
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.42
3bos_A	242	Putative DNA replication factor; P-loop containing	99.41
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.41
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.4
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.39
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.35
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.34
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.34
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.34
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.32
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.32
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.31
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.3
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.29
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.28
3co5_A	143	Putative two-component system transcriptional RES	99.28
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.28
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.26
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.23
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.21
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.11
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.11
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	99.05
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.94
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.93
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.88
2qgz_A	308	Helicase loader, putative primosome component; str	98.85
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.85
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.81
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.77
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.74
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.6
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.6
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.59
2fna_A	357	Conserved hypothetical protein; structural genomic	98.55
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.51
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.45
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.41
3f8t_A	506	Predicted ATPase involved in replication control,	98.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.25
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.25
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.18
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.1
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.06
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.06
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.02
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.01
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.99
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.95
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.91
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.9
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.9
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.86
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.86
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.85
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.8
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.79
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.79
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.78
3io5_A	333	Recombination and repair protein; storage dimer, i	97.75
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.74
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.73
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.73
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.72
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.71
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.7
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.69
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.67
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.67
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.65
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.65
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.64
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.64
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.64
1via_A	175	Shikimate kinase; structural genomics, transferase	97.63
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.63
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.62
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.62
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.6
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.59
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.58
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.58
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.57
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.57
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.57
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.57
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.54
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.54
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.53
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.52
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.51
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.5
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.48
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.48
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.47
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.45
3kw6_A	78	26S protease regulatory subunit 8; structural geno	97.44
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.43
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.42
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.42
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.41
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.41
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.41
2krk_A	86	26S protease regulatory subunit 8; structural geno	97.39
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.39
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.38
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.36
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.36
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.36
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.35
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.33
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.26
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.26
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.26
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.26
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.25
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.24
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.24
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.24
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.24
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.24
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.23
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.22
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.21
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.2
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.17
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.17
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.15
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.14
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.14
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.13
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.13
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.11
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.09
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.08
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.08
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.07
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.05
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.05
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.03
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.02
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.02
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.02
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.02
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.01
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.0
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.99
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.98
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.94
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.93
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.82
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.81
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.79
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.78
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.76
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.76
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.76
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	96.76
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.75
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.72
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.72
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.69
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.69
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.69
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.67
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.61
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.5
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.48
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.48
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.45
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.41
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	96.4
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.34
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	96.33
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.28
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.27
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.26
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.25
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.24
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.23
3ice_A	422	Transcription termination factor RHO; transcriptio	96.18
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.17
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.15
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.13
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.09
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.04
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.04
2xxa_A	433	Signal recognition particle protein; protein trans	96.03
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.98
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.98
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.96
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.95
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.94
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.94
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.91
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.83
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.82
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.81
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.8
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.75
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.75
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.75
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.73
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.73
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.7
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.67
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.66
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.61
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.61
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.6
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.55
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.54
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	95.53
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.53
2og2_A	359	Putative signal recognition particle receptor; nuc	95.51
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	95.49
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	95.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.4
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.38
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	95.38
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.34
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.33
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.32
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.27
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.27
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.26
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.23
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.05
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.01
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.92
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.92
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	94.91
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.86
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.83
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.79
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.74
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.68
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.64
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.64
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.59
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.58
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.57
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.54
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	94.52
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.52
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	94.51
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.5
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	94.5
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.48
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.43
1g6h_A	257	High-affinity branched-chain amino acid transport	94.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.4
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.38
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.37
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.36
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.36
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.35
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.34
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.34
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.33
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.32
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.29
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.26
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	94.26
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.23
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.22
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.19
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.19
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.18
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.17
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.17
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.17
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.16
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.15
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.13
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.12
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.12
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.1
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.09
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.08
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.07
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.03
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.03
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.01
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.99
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.89
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	93.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.85
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.85
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.8
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.8
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.77
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.7
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.7
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.7
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.7
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.7
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.62
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	93.61
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.59
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.59
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.56
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.55
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.53
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.52
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	93.51
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.51
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.5
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.48
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	93.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.45
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	93.43
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	93.42
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.41
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.39
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.38
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	93.32
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.28
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	93.27
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.26
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	93.23
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.18
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.17
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	93.16
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.15
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.15
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.1
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.1
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	93.07
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.05
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.04
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	93.04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	93.02
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.0
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.98
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	92.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.94
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.93
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.9
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.89
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	92.87
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	92.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.78
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.74
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	92.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	92.71
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.67
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.65
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	92.63
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.58
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.56
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.56
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.54
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.48
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.41
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.39
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.36
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	92.32
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	92.31
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	92.31
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	92.29
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.28
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.25
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.23
3b6e_A	216	Interferon-induced helicase C domain-containing P;	92.22
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	92.2
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	92.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.16
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.16
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	92.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.05
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	92.04
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	92.01
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	91.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.93
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.92
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	91.9

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=100.00  E-value=7.1e-53  Score=397.99  Aligned_cols=277  Identities=88%  Similarity=1.401  Sum_probs=238.9

Q ss_pred             CchhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694            1 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus         1 ~~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      +|+++.+++|+|+..++.++|+|+|||||||||||++|+++|++++.+++.++++++.++++|+++..+++.|..|.+++
T Consensus        16 ~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~   95 (293)
T 3t15_A           16 MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII   95 (293)
T ss_dssp             HHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      +...|+||||||||++++++++..+.+..++.+...|++++|+.+.+++++.+......+|+||+|||+++.||++|+|+
T Consensus        96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~  175 (293)
T 3t15_A           96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD  175 (293)
T ss_dssp             TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred             hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence            89999999999999999877655566677888999999999999888888887777788999999999999999999999


Q ss_pred             CCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCc
Q 019694          161 GRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK  240 (337)
Q Consensus       161 gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~  240 (337)
                      ||||+.+++|+.++|.+|++.++...+++.+.+++++++|++++|++++++|++.+++++++|++..|.+++.+.++++.
T Consensus       176 ~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~~~~~~~  255 (293)
T 3t15_A          176 GRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSF  255 (293)
T ss_dssp             HHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHHHHTSCS
T ss_pred             CCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCcccHHHHHHHHHHHHHHHhhhhhhhhHH
Q 019694          241 EAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLAD  277 (337)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~g~~l~~eq~~~~~~~l~~  277 (337)
                      ...|.|.++.+++++|+++|+++++||+++..++|++
T Consensus       256 ~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~  292 (293)
T 3t15_A          256 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD  292 (293)
T ss_dssp             SCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            8899999999999999999999999999999999986

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-41  Score=329.64  Aligned_cols=177  Identities=19%  Similarity=0.266  Sum_probs=153.7

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.|+.+|..|    +..+||||||||||
T Consensus       176 ~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A----r~~aP~IIFiDEiD  251 (405)
T 4b4t_J          176 SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID  251 (405)
T ss_dssp             HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH----HHTCSEEEEEESSS
T ss_pred             hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH----HHhCCceEeeecch
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCc-c-cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTT-Q-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~-~-~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++++++.+. . .....+.+. .|++.+|        |.   ....+|+||+|||+++.|||||+||||||+.|++  |
T Consensus       252 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP  319 (405)
T 4b4t_J          252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLD--------GF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP  319 (405)
T ss_dssp             CCTTSCSCSSSGGGGHHHHHHH-HHHHHHH--------TT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred             hhccCCCCCCCCCcHHHHHHHH-HHHHhhh--------cc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence            9998775222 1 122223333 3444445        55   5567899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+++..    +++.+.+++.|+||+|+||..
T Consensus       320 d~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~  360 (405)
T 4b4t_J          320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG  360 (405)
T ss_dssp             CHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence            9999999999998765    456789999999999999963

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-40  Score=324.54  Aligned_cols=177  Identities=21%  Similarity=0.291  Sum_probs=153.1

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..|    +..+||||||||||
T Consensus       210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~A----r~~aP~IIfiDEiD  285 (437)
T 4b4t_I          210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA----GENAPSIVFIDEID  285 (437)
T ss_dssp             HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHH----HHTCSEEEEEEEES
T ss_pred             hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHH----HhcCCcEEEEehhh
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcc--cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~~--~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++++|+.+..  .....+.+. .|++.+|        |.   ....+|+||+|||+++.||+||+||||||+.|++  |
T Consensus       286 ai~~~R~~~~~~~~~~~~~~l~-~LL~~lD--------g~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP  353 (437)
T 4b4t_I          286 AIGTKRYDSNSGGEREIQRTML-ELLNQLD--------GF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP  353 (437)
T ss_dssp             SSSCCCSCSSCSSCCHHHHHHH-HHHHHHH--------HC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred             hhcccCCCCCCCccHHHHHHHH-HHHHHhh--------Cc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence            99987753221  112222332 3444444        44   5567899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+++..    +++.+.|++.++||+|+||..
T Consensus       354 d~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~  394 (437)
T 4b4t_I          354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA  394 (437)
T ss_dssp             CHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence            9999999999999765    456789999999999999973

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-40  Score=323.48  Aligned_cols=177  Identities=20%  Similarity=0.291  Sum_probs=152.6

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..|    +..+||||||||+|
T Consensus       237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~A----r~~aP~IIfiDEiD  312 (467)
T 4b4t_H          237 TLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID  312 (467)
T ss_dssp             HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHH----HHTCSEEEEEECCT
T ss_pred             HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHH----HhcCCceEeecccc
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcc-c-chhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTTQ-Y-TVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~~-~-~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++.+|+.... . ....+.+. .|++.+|        |.   ....+|+||+|||+++.||+||+||||||+.|++  |
T Consensus       313 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP  380 (467)
T 4b4t_H          313 AVGGARFDDGAGGDNEVQRTML-ELITQLD--------GF---DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP  380 (467)
T ss_dssp             TTSBCCSSSSCGGGGHHHHHHH-HHHHHHH--------SS---CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred             cccccccCcCCCccHHHHHHHH-HHHHHhh--------cc---CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence            99987753221 1 11122222 3333344        44   5668899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+++..    +++.+.|++.|+||+|+||..
T Consensus       381 d~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~  421 (467)
T 4b4t_H          381 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS  421 (467)
T ss_dssp             CHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence            9999999999998764    456789999999999999963

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=321.90  Aligned_cols=177  Identities=26%  Similarity=0.356  Sum_probs=153.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|++++.++.+|..|    +..+||||||||||
T Consensus       209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A----~~~~P~IifiDEiD  284 (437)
T 4b4t_L          209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEPCIIFMDEVD  284 (437)
T ss_dssp             HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHH----HHSCSEEEEEECCC
T ss_pred             hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHH----HhcCCceeeeeccc
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +++++|++..  ......+.+. .|++.+|        |.   ....+|+||+|||+++.|||||+||||||+.|++  |
T Consensus       285 ai~~~R~~~~~~~~~~~~~~l~-~lL~~lD--------g~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP  352 (437)
T 4b4t_L          285 AIGGRRFSEGTSADREIQRTLM-ELLTQMD--------GF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP  352 (437)
T ss_dssp             SSSCCCSSSCCSSTTHHHHHHH-HHHHHHH--------SS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred             ccccccccCCCCcchHHHHHHH-HHHHHhh--------cc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence            9998775221  1222223333 3444445        55   5567899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+++..    .++.+.+++.|+||+|+||..
T Consensus       353 d~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~  393 (437)
T 4b4t_L          353 NEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN  393 (437)
T ss_dssp             CHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence            9999999999998754    566799999999999999963

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-40  Score=326.36  Aligned_cols=178  Identities=22%  Similarity=0.308  Sum_probs=152.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+|+|++++++|+.++++++.++|+|+++++++.+|..|    +..+||||||||||
T Consensus       209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A----~~~aP~IifiDEiD  284 (434)
T 4b4t_M          209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA----KEKAPTIIFIDELD  284 (434)
T ss_dssp             HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH----HHHCSEEEEEECTH
T ss_pred             hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH----HhcCCeEEeecchh
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcc-cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           95 AGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        95 ~l~~~~~~~~~-~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      +++++|+++.. .......+...|++.+|        |+   ....+|+||+|||+++.||+||+||||||+.|++  |+
T Consensus       285 al~~~R~~~~~~~~~~~~~~~~~lL~~ld--------g~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd  353 (434)
T 4b4t_M          285 AIGTKRFDSEKSGDREVQRTMLELLNQLD--------GF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS  353 (434)
T ss_dssp             HHHCCCSSGGGGTTHHHHHHHHHHHHHHT--------TS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCC
T ss_pred             hhhhccCCCCCCCchHHHHHHHHHHHHhh--------cc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcC
Confidence            99987753221 11111222233444445        65   5567899999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      .++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus       354 ~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~  393 (434)
T 4b4t_M          354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA  393 (434)
T ss_dssp             HHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence            999999999888643    567799999999999999963

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=313.69  Aligned_cols=177  Identities=20%  Similarity=0.280  Sum_probs=153.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|+|||||||||||++|+|+|++++++|+.++++++.++|+|++++.|+.+|..|    +..+||||||||+|
T Consensus       200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A----~~~aP~IifiDEiD  275 (428)
T 4b4t_K          200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAPSIIFIDEVD  275 (428)
T ss_dssp             HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH----HHTCSEEEEEECTH
T ss_pred             hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHH----HHcCCCeeechhhh
Confidence            45999999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC---
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---  169 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~---  169 (337)
                      ++++.|++.  .......+.+. .|++.+|        |.   ....+|+||+|||+++.|||||+||||||+.|++   
T Consensus       276 ~i~~~R~~~~~~~~~~~~r~l~-~lL~~ld--------g~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l  343 (428)
T 4b4t_K          276 SIATKRFDAQTGSDREVQRILI-ELLTQMD--------GF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL  343 (428)
T ss_dssp             HHHCSCSSSCSCCCCHHHHHHH-HHHHHHH--------HS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred             hhhccccCCCCCCChHHHHHHH-HHHHHhh--------CC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence            999777422  12223334444 4445555        55   4567899999999999999999999999999987   


Q ss_pred             CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          170 PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      |+.++|.+|++.+++..    +++.+.+++.|+||+|+||..
T Consensus       344 Pd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~  385 (428)
T 4b4t_K          344 RDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA  385 (428)
T ss_dssp             CCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence            79999999999998765    456789999999999999963

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=1.1e-36  Score=320.40  Aligned_cols=192  Identities=22%  Similarity=0.347  Sum_probs=137.6

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||++|+++|++++.+|+.++++++.++|+|++++.|+++|..|    +..+||||||||||
T Consensus       505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiD  580 (806)
T 3cf2_A          505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD  580 (806)
T ss_dssp             SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGG
T ss_pred             hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhh
Confidence            45889999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      ++++.|+..  .......+.++++| ..+|        |.   ....+|+||+|||+|+.||+|++||||||+.+++  |
T Consensus       581 sl~~~R~~~~~~~~~~~~rv~~~lL-~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP  648 (806)
T 3cf2_A          581 SIAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  648 (806)
T ss_dssp             GCC--------------CHHHHHHH-HHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred             HHhhccCCCCCCCchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence            999887532  22334445555444 4555        55   4567899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS  225 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~  225 (337)
                      +.++|.+|++.++++.    +++.+.|++.++||+|+||..   ++......++++.++
T Consensus       649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~---l~~~A~~~a~r~~~~  704 (806)
T 3cf2_A          649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE---ICQRACKLAIRESIE  704 (806)
T ss_dssp             --CHHHHTTTTTSSCC--CCC----------------CHHH---HHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHH---HHHHHHHHHHHHHHH
Confidence            9999999999999865    445688999999999999974   333333334555443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=2e-34  Score=303.30  Aligned_cols=192  Identities=22%  Similarity=0.303  Sum_probs=162.0

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|+++|+|||||||||||||+||+++|++++.+++.++++++.++|.|++++.++.+|..|    ++.+||||||||||
T Consensus       232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A----~~~~PsIIfIDEiD  307 (806)
T 3cf2_A          232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELD  307 (806)
T ss_dssp             SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHH----TTSCSEEEEEESGG
T ss_pred             hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHH----HHcCCeEEEEehhc
Confidence            56899999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      +++.++++ .......+.++ .|+.++|        +.   ....+|+||+|||+++.||++|+|+||||+.+++  |+.
T Consensus       308 al~~~r~~-~~~~~~~riv~-~LL~~md--------g~---~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~  374 (806)
T 3cf2_A          308 AIAPKREK-THGEVERRIVS-QLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA  374 (806)
T ss_dssp             GTCCTTTT-CCCTTHHHHHH-HHHTHHH--------HC---CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCH
T ss_pred             ccccccCC-CCChHHHHHHH-HHHHHHh--------cc---cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCH
Confidence            99987762 33344444554 4445555        44   4457899999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHh
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG  226 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~  226 (337)
                      ++|.+|++.+++..    +++...++..|+||+|+||..   +.......++++....
T Consensus       375 ~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA~~~A~~r~~~~  429 (806)
T 3cf2_A          375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEAALQAIRKKMDL  429 (806)
T ss_dssp             HHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHHHHHHHHhcccc
Confidence            99999999998764    567799999999999999973   3333333345544443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.97  E-value=3.5e-30  Score=257.91  Aligned_cols=177  Identities=21%  Similarity=0.272  Sum_probs=145.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+|+||+||||||||++|+++|.+++.+|+.++++++.+.++|..+..++.+|..|    +...|+||||||||
T Consensus        43 ~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A----~~~~p~ILfIDEid  118 (476)
T 2ce7_A           43 RIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQA----KAHAPCIVFIDEID  118 (476)
T ss_dssp             TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHH----HHTCSEEEEEETGG
T ss_pred             hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHH----HhcCCCEEEEechh
Confidence            45889999999999999999999999999999999999999999999999999999999999    88899999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+..+++..  .......+.++++| ..++        ++   ....+|+||+|||+++.||++++|+||||+.+.+  |
T Consensus       119 ~l~~~r~~~~~g~~~~~~~~l~~LL-~~ld--------~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P  186 (476)
T 2ce7_A          119 AVGRHRGAGLGGGHDEREQTLNQLL-VEMD--------GF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP  186 (476)
T ss_dssp             GTCCC---------CHHHHHHHHHH-HHHH--------HS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred             hhhhhcccccCcCcHHHHHHHHHHH-HHHh--------cc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence            998766421  11112223344333 3333        33   2346799999999999999999999999999998  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+++..    +++...+++.+.||+|++|..
T Consensus       187 d~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~  227 (476)
T 2ce7_A          187 DMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLEN  227 (476)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHH
Confidence            9999999999888764    345678999999999999974

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.97  E-value=8.1e-29  Score=236.44  Aligned_cols=188  Identities=20%  Similarity=0.259  Sum_probs=152.4

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      +..+|++||||||||||||++|+++|+++ +.+++.++++++.++|.|+.++.++.+|..|    +..+|+||||||||+
T Consensus        41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a----~~~~~~vl~iDEid~  116 (322)
T 1xwi_A           41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDS  116 (322)
T ss_dssp             TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHH----HHTSSEEEEEETTTG
T ss_pred             CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH----HhcCCcEEEeecHHH
Confidence            46788999999999999999999999999 8999999999999999999999999999999    888999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +++.++. .......+.++++| ..++        +.  .....+|+||+|||+++.+|++++|  ||++.+++  |+.+
T Consensus       117 l~~~~~~-~~~~~~~~~~~~ll-~~ld--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~  182 (322)
T 1xwi_A          117 LCGSRSE-NESEAARRIKTEFL-VQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH  182 (322)
T ss_dssp             GGCCSSS-CCTTHHHHHHHHHH-HHHH--------CS--SSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred             hcccccc-ccchHHHHHHHHHH-HHHh--------cc--cccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence            9877652 23334444444443 4444        22  1235789999999999999999999  99999998  9999


Q ss_pred             HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH
Q 019694          174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS  225 (337)
Q Consensus       174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~  225 (337)
                      +|.+|++.++...+.  +.   ..|++.++||+|+||..   +.......++++.+.
T Consensus       183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A~~~a~r~~~~  236 (322)
T 1xwi_A          183 ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDALMQPVRKVQS  236 (322)
T ss_dssp             HHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHh
Confidence            999999999876643  33   67888899999999973   333334445665554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=234.80  Aligned_cols=176  Identities=25%  Similarity=0.400  Sum_probs=142.5

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..++.+|+|++|+||||||||+|++++|.+++.+++.+++.++.+.+.|+.++.++.+|..+    +...|+++|+||+|
T Consensus        38 ~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a----~~~~p~i~~~Deid  113 (274)
T 2x8a_A           38 ALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAPCVIFFDEVD  113 (274)
T ss_dssp             HTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHH----HHTCSEEEEEETCT
T ss_pred             HcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHH----HhcCCCeEeeehhh
Confidence            45889999999999999999999999999999999999999999999999999999999998    78899999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR  172 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~  172 (337)
                      .++..++.. ......+.+++ ++..++        |.   .....++++++||+++.||+|++||||||+.+++  |+.
T Consensus       114 ~~~~~r~~~-~~~~~~~~~~~-~l~~Ls--------gg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~  180 (274)
T 2x8a_A          114 ALCPRRSDR-ETGASVRVVNQ-LLTEMD--------GL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP  180 (274)
T ss_dssp             TTCC----------CTTHHHH-HHHHHH--------TC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCH
T ss_pred             hhhcccCCC-cchHHHHHHHH-HHHhhh--------cc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCH
Confidence            987655421 11112233333 333334        33   4456789999999999999999999999999999  999


Q ss_pred             HHHHHHHHHhccC-------CCCCHHHHHHH--hcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~-------~~l~~~~la~l--~~gf~gadl~~  207 (337)
                      ++|.+|++.+++.       ..++.+.++..  ++||+|+||..
T Consensus       181 ~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~  224 (274)
T 2x8a_A          181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA  224 (274)
T ss_dssp             HHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence            9999999998853       24566788876  45999999974

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.96  E-value=1.8e-29  Score=238.36  Aligned_cols=176  Identities=22%  Similarity=0.366  Sum_probs=147.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .|+++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|    ....|+||||||||.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~  119 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS  119 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHH----HHTCSEEEEECSTTH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHH----HhcCCeEEEEEChHH
Confidence            3788999999999999999999999999999999999999999999999999999999999    888999999999999


Q ss_pred             ccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           96 GAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        96 l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      +...+++.  .......+.+. .|+..++        +.   ....+|+||+|||+++.||++++|+|||++.+++  |+
T Consensus       120 l~~~~~~~~~~~~~~~~~~~~-~lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~  187 (301)
T 3cf0_A          120 IAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD  187 (301)
T ss_dssp             HHHHHTTTTCCSSCSCCHHHH-HHHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred             HhhccCCCcCCcchHHHHHHH-HHHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcC
Confidence            88654321  11112223333 3445555        33   3356799999999999999999999999999998  99


Q ss_pred             HHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          172 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      .++|.+|++.+++..    +++.+.++..+.||+|++|..
T Consensus       188 ~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~  227 (301)
T 3cf0_A          188 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE  227 (301)
T ss_dssp             HHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence            999999999998754    456689999999999998863

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.96  E-value=1.1e-28  Score=234.79  Aligned_cols=191  Identities=20%  Similarity=0.272  Sum_probs=152.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .+..+|++||||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|    +...|+||||||||.
T Consensus        46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~  121 (322)
T 3eie_A           46 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDA  121 (322)
T ss_dssp             TTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHH----HHTSSEEEEEECGGG
T ss_pred             cCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHH----HhcCCeEEEechhhh
Confidence            3667889999999999999999999999999999999999999999999999999999999    888999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +...++. .+.....+... .|+..++        +.  .....+|+||+|||+++.||++++|  ||+..+++  |+.+
T Consensus       122 l~~~~~~-~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~  187 (322)
T 3eie_A          122 LTGTRGE-GESEASRRIKT-ELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA  187 (322)
T ss_dssp             GSCC-------CCTHHHHH-HHHHHHG--------GG--GTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHH
T ss_pred             hhccCCC-CcchHHHHHHH-HHHHHhc--------cc--cccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHH
Confidence            9876642 22233333443 3444444        22  1245679999999999999999999  99999988  9999


Q ss_pred             HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhh
Q 019694          174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV  227 (337)
Q Consensus       174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~  227 (337)
                      +|.+|++.++...+.  +.   ..+++.++||+|++|.   ++.......++++....+
T Consensus       188 ~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a~~~a~r~~~~~~  243 (322)
T 3eie_A          188 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSAT  243 (322)
T ss_dssp             HHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHHTTHHHHHHHHCE
T ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhh
Confidence            999999999887653  33   6788889999999996   334444445566666554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.95  E-value=2.3e-28  Score=246.11  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=167.3

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+|+||+||||||||+||+++|.+++.+++.++++++.+.+.|...+.++.+|+.+    +...|+|+||||||
T Consensus        58 ~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a----~~~~p~il~IDEId  133 (499)
T 2dhr_A           58 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID  133 (499)
T ss_dssp             TTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTS----SSSSSCEEEEECGG
T ss_pred             hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHH----HhcCCCEEEEehHH
Confidence            45788999999999999999999999999999999999999999999999888899999988    77789999999999


Q ss_pred             cccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+...++...  ......+.++++| ..++        |.   .....+++|++||+++.||++++|+||||+.+.+  |
T Consensus       134 ~l~~~r~~~~~~~~~e~~~~l~~LL-~~Ld--------g~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P  201 (499)
T 2dhr_A          134 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP  201 (499)
T ss_dssp             GTCCCSSSSTTTSSHHHHHHHHHHH-HHGG--------GC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred             HHHHhhccCcCCCcHHHHHHHHHHH-HHhc--------cc---ccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence            9886654111  1111223344333 3333        44   3456789999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHH----hhcCccchhhh---hcC
Q 019694          171 TREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS----GVGVGSIGKSL---VNS  239 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~----~~~~~~~~~~~---~~~  239 (337)
                      +.++|.+|++.+++...+    +...++..+.||+|++|...-  +     ++.....+    .+..+.+...+   +..
T Consensus       202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv--~-----~Aa~~A~~~~~~~It~~dl~~al~~v~~~  274 (499)
T 2dhr_A          202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL--N-----EAALLAAREGRRKITMKDLEEAADRVMML  274 (499)
T ss_dssp             CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHH--H-----HHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHH--H-----HHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence            999999999998875443    457899999999999997431  1     11111110    12222222211   111


Q ss_pred             cCC-CCCCCCCcccHHHHHHHHHHHHHHH
Q 019694          240 KEA-APTFEQPRMTMEKLLEYGNMIVQEQ  267 (337)
Q Consensus       240 ~~~-~~~~~~~~~~~~~l~~~g~~l~~eq  267 (337)
                      ... ...+.+.+....++|++||+++..-
T Consensus       275 ~~~~~~~~~~~e~~~~a~~e~g~av~~~~  303 (499)
T 2dhr_A          275 PAKKSLVLSPRDRRITAYHEAGHALAAHF  303 (499)
T ss_dssp             SSSSCCCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchhhHHHHhhhHHHHHHHHHHHhh
Confidence            111 1223344556789999999987653

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.95  E-value=2e-27  Score=229.70  Aligned_cols=188  Identities=20%  Similarity=0.270  Sum_probs=144.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .+.+++++||||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|    +...|+||||||||.
T Consensus        79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~  154 (355)
T 2qp9_X           79 GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKPSIIFIDQVDA  154 (355)
T ss_dssp             SSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHH----HHTSSEEEEEECGGG
T ss_pred             cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHh
Confidence            3567889999999999999999999999999999999999999999999999999999998    888999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +...++. .+.....+..+ .|+..++        +.  .....+|+||+|||+++.||++++|  ||+..+++  |+.+
T Consensus       155 l~~~r~~-~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~  220 (355)
T 2qp9_X          155 LTGTRGE-GESEASRRIKT-ELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA  220 (355)
T ss_dssp             GTC-------CTHHHHHHH-HHHHHHH--------HC--C---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHH
T ss_pred             hcccCCC-CcchHHHHHHH-HHHHHhh--------cc--cccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHH
Confidence            9877652 23333334444 3444544        22  1234679999999999999999999  99999988  9999


Q ss_pred             HHHHHHHHhccCCCC--CH---HHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHH
Q 019694          174 DRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI  224 (337)
Q Consensus       174 ~R~~Il~~~~~~~~l--~~---~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i  224 (337)
                      +|.+|++.++...+.  +.   ..|++.++||+|++|..   +.......++++..
T Consensus       221 ~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~~A~~~a~~~~~  273 (355)
T 2qp9_X          221 ARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVKDALMQPIRKIQ  273 (355)
T ss_dssp             HHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHH
Confidence            999999999877643  33   67899999999999973   33333334455443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=1.6e-27  Score=221.47  Aligned_cols=178  Identities=24%  Similarity=0.344  Sum_probs=145.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .|+.++.++||+||||||||++|+++|++++.+++.++++++.+.+.|+....++..|..+    +...|+||||||+|.
T Consensus        46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~  121 (285)
T 3h4m_A           46 VGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA----KEKAPSIIFIDEIDA  121 (285)
T ss_dssp             HCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHH----HHTCSEEEEEETTHH
T ss_pred             cCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHH----HHcCCeEEEEECHHH
Confidence            4678899999999999999999999999999999999999999999999999999999998    888999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +..++.+..  ..........+..+++     .+++.   ....+++||+|||.++.+|++++|++||+..+.+  |+.+
T Consensus       122 l~~~~~~~~--~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~  191 (285)
T 3h4m_A          122 IAAKRTDAL--TGGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK  191 (285)
T ss_dssp             HHBCCSSSC--CGGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHH
T ss_pred             hcccCcccc--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHH
Confidence            987664221  1111122233333333     11122   3346799999999999999999999999999998  9999


Q ss_pred             HHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          174 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       174 ~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +|.+|++.++...    ..+...++..+.||++++|..
T Consensus       192 ~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~  229 (285)
T 3h4m_A          192 GRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA  229 (285)
T ss_dssp             HHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence            9999999988754    345689999999999999863

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.95  E-value=3.1e-27  Score=234.91  Aligned_cols=189  Identities=19%  Similarity=0.248  Sum_probs=143.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      +..+|++||||||||||||++|+++|+++ +.+|+.++++++.++|.|+.++.++.+|..|    +...|+||||||||.
T Consensus       163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~  238 (444)
T 2zan_A          163 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLA----RENKPSIIFIDEIDS  238 (444)
T ss_dssp             GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHH----HHSCSEEEEESCTTT
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHH----HHcCCeEEEEechHh
Confidence            35678999999999999999999999999 8999999999999999999999999999998    888999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +++.++. .......+.++++| ..++        +.  .....+|+||+|||+++.||++++|  ||+..+++  |+.+
T Consensus       239 l~~~~~~-~~~~~~~~~~~~lL-~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~  304 (444)
T 2zan_A          239 LCGSRSE-NESEAARRIKTEFL-VQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAH  304 (444)
T ss_dssp             TCCCSSC-CCCGGGHHHHHHHH-TTTT--------CS--SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHH
T ss_pred             hccCCCC-ccccHHHHHHHHHH-HHHh--------Cc--ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHH
Confidence            9876652 23333444444433 3444        33  1235789999999999999999999  99998888  9999


Q ss_pred             HHHHHHHHhccCCCC--C---HHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHh
Q 019694          174 DRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISG  226 (337)
Q Consensus       174 ~R~~Il~~~~~~~~l--~---~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~  226 (337)
                      +|.+|++.++...+.  +   ...|++.++||+|++|..   +.......++++.+..
T Consensus       305 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~a~~~a~r~~~~~  359 (444)
T 2zan_A          305 ARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVRDALMQPVRKVQSA  359 (444)
T ss_dssp             HHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHHHHHTHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHhh
Confidence            999999999876543  3   367899999999999974   3333334456665543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=218.30  Aligned_cols=175  Identities=23%  Similarity=0.354  Sum_probs=133.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .|.+.|+++|||||||||||++|+++|++++.+++.++++++.+.+.|.....++.+|..+    ....|+||||||+|.
T Consensus        34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~  109 (262)
T 2qz4_A           34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA  109 (262)
T ss_dssp             --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred             cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence            4678999999999999999999999999999999999999999999999988999999998    778899999999999


Q ss_pred             ccccCCCCcc---cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           96 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        96 l~~~~~~~~~---~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +..+++....   .......+..+| +.++        +.   ....+++||+|||.++.+|++++|+|||+..+++  |
T Consensus       110 l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p  177 (262)
T 2qz4_A          110 VGKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP  177 (262)
T ss_dssp             -----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred             hhccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence            9866541110   111122233222 3333        22   2346899999999999999999999999999998  9


Q ss_pred             CHHHHHHHHHHhccCCCCCH------HHHHHHhcCCCchhhH
Q 019694          171 TREDRIGVCKGIFRNDNVAD------DDIVKLVDTFPGQSID  206 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~l~~------~~la~l~~gf~gadl~  206 (337)
                      +.++|.+|++.++...++..      ..+++.+.||++++|.
T Consensus       178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~  219 (262)
T 2qz4_A          178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA  219 (262)
T ss_dssp             CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence            99999999999887655442      5688888999998876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.95  E-value=1e-26  Score=213.56  Aligned_cols=177  Identities=21%  Similarity=0.291  Sum_probs=142.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+++||+||||||||++|+++|++++.+++.++++++.+.+.|...+.++.+|..|    ....|+++||||+|
T Consensus        39 ~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~il~iDeid  114 (257)
T 1lv7_A           39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID  114 (257)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHH
T ss_pred             HcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHH----HHcCCeeehhhhhh
Confidence            34678899999999999999999999999999999999999999999999999999999998    78889999999999


Q ss_pred             cccccCCCCcc--cchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~~~--~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+...++....  .....+.+.. ++..++        +.   ....+++||+|||+++.+|++++|+|||++.+.+  |
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~~~~-ll~~l~--------~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P  182 (257)
T 1lv7_A          115 AVGRQRGAGLGGGHDEREQTLNQ-MLVEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  182 (257)
T ss_dssp             HHTCCCSTTSCCTTCHHHHHHHH-HHHHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCC
T ss_pred             hhccCCCCCcCCCchHHHHHHHH-HHHHhh--------Cc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCC
Confidence            98865542111  1111233333 333344        33   3356799999999999999999999999999988  9


Q ss_pred             CHHHHHHHHHHhccCCCC----CHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~l----~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++...++    +...++..+.||++++|..
T Consensus       183 ~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~  223 (257)
T 1lv7_A          183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN  223 (257)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence            999999999998876543    3477888899999999873

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.95  E-value=4.1e-27  Score=236.77  Aligned_cols=175  Identities=22%  Similarity=0.311  Sum_probs=149.9

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .|.++|++||||||||||||++|+++|++++.+|+.++++++.+.+.|+....++.+|..|    ...+|++|||||||.
T Consensus       233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~  308 (489)
T 3hu3_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA  308 (489)
T ss_dssp             HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred             cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence            3688999999999999999999999999999999999999999999999999999999999    889999999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +..+++. ..... ...+...|+.+++        +.   ....+++||+|||+++.||++++|+|||+..+++  |+.+
T Consensus       309 l~~~~~~-~~~~~-~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~  375 (489)
T 3hu3_A          309 IAPKREK-THGEV-ERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  375 (489)
T ss_dssp             HCBCTTS-CCCHH-HHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred             hcccccc-ccchH-HHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence            9977652 22222 3344455666666        22   3456799999999999999999999999999998  9999


Q ss_pred             HHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694          174 DRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       174 ~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~  207 (337)
                      +|.+|++.++....    ++...++..+.||++++|..
T Consensus       376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~  413 (489)
T 3hu3_A          376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA  413 (489)
T ss_dssp             HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence            99999999987654    34588999999999999863

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.93  E-value=5e-25  Score=205.97  Aligned_cols=173  Identities=17%  Similarity=0.304  Sum_probs=135.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .+++++||+||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+    ....|+||||||+|.+..
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~  127 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVA----RHMQPSIIFIDEVDSLLS  127 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHH----HHTCSEEEEEETGGGTSB
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHH----HHcCCcEEEeccHHHhcc
Confidence            4689999999999999999999999999999999999999999999999999999988    788999999999999987


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                      .++. .......+... .|+..++        +........+++||+|||+++.++++++|  ||+..+++  |+.++|.
T Consensus       128 ~~~~-~~~~~~~~~~~-~ll~~l~--------~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~  195 (297)
T 3b9p_A          128 ERSS-SEHEASRRLKT-EFLVEFD--------GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE  195 (297)
T ss_dssp             CC------CCSHHHHH-HHHHHHH--------HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred             cccc-CcchHHHHHHH-HHHHHHh--------cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence            6542 11222233333 3334444        22111223679999999999999999998  89888887  9999999


Q ss_pred             HHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694          177 GVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       177 ~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~  207 (337)
                      .|++.++...+  ++.   ..+++.+.||+|++|..
T Consensus       196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~  231 (297)
T 3b9p_A          196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA  231 (297)
T ss_dssp             HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence            99998886543  443   56788899999999863

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.93  E-value=4.9e-25  Score=212.92  Aligned_cols=173  Identities=18%  Similarity=0.318  Sum_probs=138.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      ..+|++|||+||||||||++|+++|++++.+++.++++++.+.+.|+..+.++.+|..+    ....|+||||||||.+.
T Consensus       114 ~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~  189 (357)
T 3d8b_A          114 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA----RCQQPAVIFIDEIDSLL  189 (357)
T ss_dssp             GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH----HHTCSEEEEEETHHHHT
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEeCchhhh
Confidence            36789999999999999999999999999999999999999999999999999999988    88899999999999998


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHH
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR  175 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R  175 (337)
                      ..++. .......+.+. .|+..++        +. ......+++||+|||+++.++++++|  ||+..+++  |+.++|
T Consensus       190 ~~~~~-~~~~~~~~~~~-~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r  256 (357)
T 3d8b_A          190 SQRGD-GEHESSRRIKT-EFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR  256 (357)
T ss_dssp             BC-------CHHHHHHH-HHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred             ccCCC-CcchHHHHHHH-HHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence            76542 22222333333 3444444        22 11234689999999999999999998  89988888  999999


Q ss_pred             HHHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694          176 IGVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       176 ~~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~  207 (337)
                      .+|++.++...+  ++.   ..+++.++||++++|..
T Consensus       257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~  293 (357)
T 3d8b_A          257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ  293 (357)
T ss_dssp             HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence            999998886654  444   56788899999999863

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.92  E-value=2.6e-25  Score=203.79  Aligned_cols=177  Identities=20%  Similarity=0.273  Sum_probs=139.9

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..++++|+|++|+||||||||+|+++++..++.+++.+++.++.+.+.|...+.++.+|+.+    ....|+++||||||
T Consensus        43 ~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~Deid  118 (254)
T 1ixz_A           43 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID  118 (254)
T ss_dssp             HTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH----TTSSSEEEEEETHH
T ss_pred             HcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHH----HhcCCeEEEehhhh
Confidence            45788999999999999999999999999999999999999888888888888888899888    76789999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+...++..  .......+.++++ +..++        |.   .....++++++||+++.||++++|++||++.+++  |
T Consensus       119 ~l~~~~~~~~~~~~~~~~~~~~~l-l~~l~--------g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p  186 (254)
T 1ixz_A          119 AVGRKRGSGVGGGNDEREQTLNQL-LVEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP  186 (254)
T ss_dssp             HHHC---------CHHHHHHHHHH-HHHHH--------TC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred             hhhcccCccccccchHHHHHHHHH-HHHHh--------CC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCc
Confidence            987554311  0111222333333 33333        33   3345678999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.+.+..    .++...++..++||+|++|..
T Consensus       187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~  227 (254)
T 1ixz_A          187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN  227 (254)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence            9999999999887654    344578999999999999863

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.92  E-value=6.2e-27  Score=215.85  Aligned_cols=176  Identities=22%  Similarity=0.289  Sum_probs=136.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .+.++|+++||+||||||||++|+++|++++.+++.++++++.+.+.|.....++..|..+    ....|+||||||+|.
T Consensus        39 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDEid~  114 (268)
T 2r62_A           39 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETA----KKQAPSIIFIDEIDA  114 (268)
T ss_dssp             HSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHH----HHSCSCEEEESCGGG
T ss_pred             CCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHH----HhcCCeEEEEeChhh
Confidence            3678899999999999999999999999999999999999999999988877778889888    777899999999999


Q ss_pred             ccccCCCCc---ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           96 GAGRMGGTT---QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        96 l~~~~~~~~---~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +...+.++.   ......+.+. .|+..++        +.  .....+++||+|||.++.+|++++|+|||+..+++  |
T Consensus       115 l~~~~~~~~~~~~~~~~~~~~~-~ll~~l~--------~~--~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p  183 (268)
T 2r62_A          115 IGKSRAAGGVVSGNDEREQTLN-QLLAEMD--------GF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP  183 (268)
T ss_dssp             TTC----------CCCSCSSTT-TTTTTTT--------CS--SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCC
T ss_pred             hcccccccccCCCchhHHHHHH-HHHHHhh--------Cc--ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCc
Confidence            986542110   0000111121 1112222        22  12345689999999999999999999999998888  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~  206 (337)
                      +.++|.+|++.++....    ++.+.++..+.||+|++|.
T Consensus       184 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~  223 (268)
T 2r62_A          184 DFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA  223 (268)
T ss_dssp             CTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence            99999999999887643    3457788889999998875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=212.52  Aligned_cols=172  Identities=20%  Similarity=0.302  Sum_probs=128.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .++++||||||||||||++|+++|++++.+++.++++++.+.+.|+....++.+|..+    +...|+||||||||.++.
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~  221 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVA----RELQPSIIFIDQVDSLLC  221 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHH----HHSSSEEEEEETGGGGC-
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHH----HhcCCeEEEEECchhhcc
Confidence            4579999999999999999999999999999999999999999999999999999999    888999999999999986


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHH
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRI  176 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~  176 (337)
                      .+.. .......+... .|+..++        +. ......+|+||+|||+++.|+++++|  ||+..+++  |+.++|.
T Consensus       222 ~~~~-~~~~~~~~~~~-~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~  288 (389)
T 3vfd_A          222 ERRE-GEHDASRRLKT-EFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL  288 (389)
T ss_dssp             --------CTHHHHHH-HHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred             cCCC-ccchHHHHHHH-HHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence            6542 22222333333 3444444        22 11234679999999999999999998  89887887  9999999


Q ss_pred             HHHHHhccCCC--CCH---HHHHHHhcCCCchhhHh
Q 019694          177 GVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       177 ~Il~~~~~~~~--l~~---~~la~l~~gf~gadl~~  207 (337)
                      +|++.++...+  ++.   ..++..++||++++|..
T Consensus       289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~  324 (389)
T 3vfd_A          289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA  324 (389)
T ss_dssp             HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence            99999887654  333   57788899999998864

>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}

Probab=99.92  E-value=2.3e-25  Score=175.21  Aligned_cols=103  Identities=84%  Similarity=1.316  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhHhHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCC
Q 019694          170 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQP  249 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~~~~alra~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
                      -++++|..|++.++++++++.++++++++.|++|+||||||||+++|+++|++|+..+|.++++++++++++++|.|++|
T Consensus         5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P   84 (107)
T 3thg_A            5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP   84 (107)
T ss_dssp             CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHhhhhh
Q 019694          250 RMTMEKLLEYGNMIVQEQENVKR  272 (337)
Q Consensus       250 ~~~~~~l~~~g~~l~~eq~~~~~  272 (337)
                      .+|+++|+++|++|++||++|++
T Consensus        85 ~~tl~~Lle~G~~Lv~EQ~~V~~  107 (107)
T 3thg_A           85 KMTIDKLLGYGGMLVQEQENVKR  107 (107)
T ss_dssp             CCCHHHHHHHHHHHHTTC-----
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.91  E-value=3e-24  Score=199.78  Aligned_cols=176  Identities=21%  Similarity=0.277  Sum_probs=139.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..++.+|+|++|+||||||||+|+++++..++.+++.+++.++...+.+...+.++.+|+.+    ....|+++||||||
T Consensus        67 ~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~i~~iDeid  142 (278)
T 1iy2_A           67 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEID  142 (278)
T ss_dssp             HTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHH----HTSCSEEEEEETHH
T ss_pred             HcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHH----HhcCCcEEehhhhH
Confidence            45788899999999999999999999999999999999998888888888878888899888    76789999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+...+...  .......+.+.+++ ..++        |.   .....++++++||+++.||++++|++||++.+++  |
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~ll-~~ls--------gg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p  210 (278)
T 1iy2_A          143 AVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP  210 (278)
T ss_dssp             HHHCC--------CHHHHHHHHHHH-HHHT--------TC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCC
T ss_pred             hhhcccccccCCcchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCc
Confidence            887554311  01111223333332 3333        33   3345678999999999999999999999999998  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhH
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~  206 (337)
                      +.++|.+|++.+++...    ++...++..++||+|++|.
T Consensus       211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~  250 (278)
T 1iy2_A          211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE  250 (278)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence            99999999998876543    4457889999999999986

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.85  E-value=7.4e-24  Score=211.01  Aligned_cols=174  Identities=10%  Similarity=0.030  Sum_probs=113.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .+..+|+++|||||||||||++|+++|++++  .+|+.++++++.++++|+.+. +++.|..|.. .+...|+||||||+
T Consensus        58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEi  135 (456)
T 2c9o_A           58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEV  135 (456)
T ss_dssp             TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEE
T ss_pred             hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEech
Confidence            4667789999999999999999999999999  999999999999999999987 8888887622 23568999999999


Q ss_pred             ccccccCCCCcc---cchhhH---------------hHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcc
Q 019694           94 DAGAGRMGGTTQ---YTVNNQ---------------MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA  155 (337)
Q Consensus        94 D~l~~~~~~~~~---~~~~~~---------------~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~  155 (337)
                      |++++++++...   .....+               +...++ ..++.      .+.   .....|+|++|||+++.+|+
T Consensus       136 d~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll-~~l~~------~~~---~~~~~v~i~attn~~~~ld~  205 (456)
T 2c9o_A          136 TELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIF-ESLQK------ERV---EAGDVIYIEANSGAVKRQGR  205 (456)
T ss_dssp             EEEEEC--------------CEEEEEEETTEEEEEEECHHHH-HHHHH------TTC---CTTEEEEEETTTCCEEEEEE
T ss_pred             hhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHH-HHHhh------ccC---CCCCEEEEEcCCCCcccCCh
Confidence            999977652211   000000               111111 11110      011   22334566799999999999


Q ss_pred             hhccCCCceE----EEeCCC--HHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhH
Q 019694          156 PLIRDGRMEK----FYWAPT--REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       156 aLlR~gR~d~----~i~~P~--~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~  206 (337)
                      +++|+||||+    .+..|+  .++|.+|++.+...   +.+.++..++|  |+|+.
T Consensus       206 a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~  257 (456)
T 2c9o_A          206 CDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDIL  257 (456)
T ss_dssp             ETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC------------
T ss_pred             hhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHH
Confidence            9999999999    333364  36677776555432   34556666677  66665

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.80  E-value=1.8e-19  Score=166.57  Aligned_cols=167  Identities=12%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH----HHHHHHHHHHHHHHHhcCceEE
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~----~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      +...+..++.++||+||||||||++|+++|++++.+++.+++++   .+.|...    ..++..|..+    ....++||
T Consensus        56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~vl  128 (272)
T 1d2n_A           56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQLSCV  128 (272)
T ss_dssp             HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSEEEE
T ss_pred             HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCCcEE
Confidence            33445678899999999999999999999999999999998765   3344433    4566777777    67789999


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~  168 (337)
                      ||||||.+++.+..+.  ... ..+.+.|..+++        +.  .....+++||+|||.++.+++..++ +||+..+.
T Consensus       129 ~iDEid~l~~~~~~~~--~~~-~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~  194 (272)
T 1d2n_A          129 VVDDIERLLDYVPIGP--RFS-NLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIH  194 (272)
T ss_dssp             EECCHHHHTTCBTTTT--BCC-HHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEE
T ss_pred             EEEChhhhhccCCCCh--hHH-HHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceEEc
Confidence            9999999876553111  111 233345545554        21  1234568899999999988884333 59999999


Q ss_pred             CCCHHHHHHHHHHhccCCCCCHH---HHHHHhcCC
Q 019694          169 APTREDRIGVCKGIFRNDNVADD---DIVKLVDTF  200 (337)
Q Consensus       169 ~P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf  200 (337)
                      +|...+|.+|...+.....++.+   .+++.+.||
T Consensus       195 ~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~  229 (272)
T 1d2n_A          195 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK  229 (272)
T ss_dssp             CCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred             CCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence            98777766665555444456654   444445554

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.80  E-value=7.8e-19  Score=164.39  Aligned_cols=153  Identities=12%  Similarity=0.109  Sum_probs=117.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC-------CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~-------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      .+++..+||+||||||||++|+++|+.++       .+++.++++++.+.+.|.....++..|..+       .++||||
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i  136 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI  136 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence            35567899999999999999999999883       389999999999999999988888888887       6789999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceE
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK  165 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~  165 (337)
                      ||+|.++..+++.    .....+...|+.+++             ....++.||+|||...     .++|+|++  ||+.
T Consensus       137 DEid~l~~~~~~~----~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~  197 (309)
T 3syl_A          137 DEAYYLYRPDNER----DYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH  197 (309)
T ss_dssp             ETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred             EChhhhccCCCcc----cccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence            9999998654311    112234445656666             2346789999998654     35788887  8988


Q ss_pred             EEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694          166 FYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL  196 (337)
Q Consensus       166 ~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l  196 (337)
                      .+.+  |+.+++.+|++.++...+  ++.+.+..+
T Consensus       198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l  232 (309)
T 3syl_A          198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETAL  232 (309)
T ss_dssp             EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred             EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            8888  999999999999887554  444444333

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.76  E-value=2.5e-18  Score=174.91  Aligned_cols=166  Identities=19%  Similarity=0.280  Sum_probs=111.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc---------CCCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      .+..+||+||||||||++|+++|..++.+++.++.+.+..         .++|.....+...|..|    ....| ||||
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l  181 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL  181 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence            4678999999999999999999999999999998876543         45666656666667666    54555 9999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc--CCCCCceEEEEeCCCCCCcchhccCCCceEEEe
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~--~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~  168 (337)
                      ||||++...+.+.         ....|++++++.+...+...+..  ....+++||+|||+++.++++|++  ||+. +.
T Consensus       182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v-i~  249 (543)
T 3m6a_A          182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEI-IN  249 (543)
T ss_dssp             EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEE-EE
T ss_pred             hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcce-ee
Confidence            9999987654311         23456667775443333222211  234789999999999999999998  8864 66


Q ss_pred             C--CCHHHHHHHHHHhccC------------CCCCHHHHHHHhcCCCc
Q 019694          169 A--PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG  202 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~------------~~l~~~~la~l~~gf~g  202 (337)
                      +  |+.+++.+|++.++..            ..++.+.+..++.+|++
T Consensus       250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~  297 (543)
T 3m6a_A          250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR  297 (543)
T ss_dssp             CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred             eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence            6  9999999999887621            13456777777776664

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.74  E-value=8.6e-18  Score=156.57  Aligned_cols=157  Identities=17%  Similarity=0.136  Sum_probs=112.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCCCh-HHHHHHHHHHHHHHHH-hcCceEEEeccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAADIIK-KGKMCCLMINDLDA   95 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~Ge~-~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~   95 (337)
                      ..|.++||+||||||||++|+++|+.++.+++.++++.+.+ +++|.. ...++.++..+...+. ...++||||||+|.
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~  127 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK  127 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence            45789999999999999999999999999999999998876 566642 3456666654311112 23578999999999


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE----eCCCCCCcchhccCCCceEEEeC--
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA--  169 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T----TN~~~~ld~aLlR~gR~d~~i~~--  169 (337)
                      +.....+ .........+...|+.+++........+   .....++.+|+|    ++.+..++++|++  ||+..+.+  
T Consensus       128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~  201 (310)
T 1ofh_A          128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA  201 (310)
T ss_dssp             GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred             cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence            8865531 2233344445667777777322111111   134567889998    4678889999986  89877888  


Q ss_pred             CCHHHHHHHHHH
Q 019694          170 PTREDRIGVCKG  181 (337)
Q Consensus       170 P~~~~R~~Il~~  181 (337)
                      |+.+++.+|++.
T Consensus       202 ~~~~~~~~il~~  213 (310)
T 1ofh_A          202 LSAADFERILTE  213 (310)
T ss_dssp             CCHHHHHHHHHS
T ss_pred             cCHHHHHHHHHh
Confidence            899999999874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.74  E-value=1.4e-18  Score=172.26  Aligned_cols=134  Identities=13%  Similarity=0.119  Sum_probs=59.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcccc-CCCCC-hHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      +|+++||+||||||||++|+++|+.++.+++.++++.+.+ +|+|+ .+..++.+|..|..+        +++||+|.+.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~~  120 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKNR  120 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSCC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhhh
Confidence            6789999999999999999999999999999999999888 69995 789999999998333        3489998875


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE-eCCCCCCcchhccCCCceEEEeC--CCHH-
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYWA--PTRE-  173 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T-TN~~~~ld~aLlR~gR~d~~i~~--P~~~-  173 (337)
                      ....    .....+.++ .|+..+|        |..   ....|  +++ ||+++.||+||+|+||||+.|++  |+.. 
T Consensus       121 ~~~~----~~~e~rvl~-~LL~~~d--------g~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~  182 (444)
T 1g41_A          121 ARAE----DVAEERILD-ALLPPAK--------NQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS  182 (444)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccch----hhHHHHHHH-HHHHHhh--------ccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence            4322    222233443 3333444        542   22333  555 99999999999999999999999  7776 


Q ss_pred             HHHHHH
Q 019694          174 DRIGVC  179 (337)
Q Consensus       174 ~R~~Il  179 (337)
                      .|.+|+
T Consensus       183 ~~~ei~  188 (444)
T 1g41_A          183 MGVEIM  188 (444)
T ss_dssp             ------
T ss_pred             chhhhh
Confidence            577765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.71  E-value=3.8e-18  Score=164.45  Aligned_cols=160  Identities=19%  Similarity=0.261  Sum_probs=110.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC-CCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~-~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      .++.++||+||||||||++|+++|+.++.+++.++++++... |+|.. ...++..|..+...+....++||||||||++
T Consensus        49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l  128 (363)
T 3hws_A           49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI  128 (363)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence            367899999999999999999999999999999999988744 66664 4566667666533334457899999999998


Q ss_pred             cccCCCC-cccchhhHhHHHHHHhhhCCCccccCC---Cc------cccCCCCCceEEEEeCCC----------CC----
Q 019694           97 AGRMGGT-TQYTVNNQMVNATLMNIADNPTCVQLP---GM------YNKEENPRVPIIVTGNDF----------ST----  152 (337)
Q Consensus        97 ~~~~~~~-~~~~~~~~~v~~~Ll~lld~~~~~~~~---g~------~~~~~~~~V~vI~TTN~~----------~~----  152 (337)
                      ...+++. .......+.+...|+.+++. ..+.++   +.      .......++++|+|+|..          ..    
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~Ll~~leg-~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~  207 (363)
T 3hws_A          129 SRKSDNPSITRDVSGEGVQQALLKLIEG-TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI  207 (363)
T ss_dssp             CCCSSCC---CHHHHHHHHHHHHHHHHC-C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred             cccccccccccccchHHHHHHHHHHhcC-ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence            8665422 22333344477788888882 222111   10      001234567777777743          11    


Q ss_pred             -------------------------------CcchhccCCCceEEEeC--CCHHHHHHHHHH
Q 019694          153 -------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCKG  181 (337)
Q Consensus       153 -------------------------------ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~  181 (337)
                                                     +.|+|+  +||+.++.+  |+.+++.+|+..
T Consensus       208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~--~R~~~~~~~~pl~~~~~~~I~~~  267 (363)
T 3hws_A          208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFI--GRLPVVATLNELSEEALIQILKE  267 (363)
T ss_dssp             ----------CCSCHHHHHHTCCHHHHHHHTCCHHHH--TTCCEEEECCCCCHHHHHHHHHS
T ss_pred             CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHh--cccCeeeecCCCCHHHHHHHHHH
Confidence                                           678887  499999877  899999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.68  E-value=4.4e-17  Score=139.66  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=93.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ..+..++|+||||||||++|+++++++          +.+++.++.+.+.  ..+.|.....++..+...   .+...++
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  117 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV  117 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence            457789999999999999999999986          6788888877665  234444445555555544   2356789


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~g  161 (337)
                      ||+|||+|.+....+.....     .+...|..+++               ..++.+|+|||.+.     .+++++++  
T Consensus       118 vl~iDe~~~l~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~--  175 (195)
T 1jbk_A          118 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER--  175 (195)
T ss_dssp             EEEEETGGGGTT------CC-----CCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred             EEEEeCHHHHhccCcccchH-----HHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence            99999999987543211111     12223333333               24678999999886     78999998  


Q ss_pred             CceEEEeC--CCHHHHHHHH
Q 019694          162 RMEKFYWA--PTREDRIGVC  179 (337)
Q Consensus       162 R~d~~i~~--P~~~~R~~Il  179 (337)
                      ||+. +.+  |+.++|.+|+
T Consensus       176 r~~~-i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          176 RFQK-VFVAEPSVEDTIAIL  194 (195)
T ss_dssp             TEEE-EECCCCCHHHHHTTC
T ss_pred             Hhce-eecCCCCHHHHHHHh
Confidence            8884 566  9999998875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.67  E-value=8.3e-16  Score=147.16  Aligned_cols=148  Identities=14%  Similarity=0.091  Sum_probs=97.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCccccCCCC-------------------------------
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAG-------------------------------   63 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~~~~G-------------------------------   63 (337)
                      +..+++++||+||||||||++|+++|++++.  +++.+++..+.+.+.+                               
T Consensus        66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld  145 (368)
T 3uk6_A           66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID  145 (368)
T ss_dssp             TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence            4455799999999999999999999999985  7778877664443333                               


Q ss_pred             ------------------ChHHHHHHHHHHHHHHHH-hc----CceEEEecccccccccCCCCcccchhhHhHHHHHHhh
Q 019694           64 ------------------EPAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI  120 (337)
Q Consensus        64 ------------------e~~~~ir~~f~~A~~~~~-~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~l  120 (337)
                                        +....++..|..+..... .+    .|+||||||+|.+..             .....|+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~  212 (368)
T 3uk6_A          146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA  212 (368)
T ss_dssp             HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred             hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence                              223445566655533222 22    278999999997632             122344444


Q ss_pred             hCCCccccCCCccccCCCCCceEEEEe-----------CCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCC-
Q 019694          121 ADNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND-  186 (337)
Q Consensus       121 ld~~~~~~~~g~~~~~~~~~V~vI~TT-----------N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~-  186 (337)
                      ++             .....+++++|.           |.+..++++|++  ||.. +.+  |+.+++.+|++..+... 
T Consensus       213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~  276 (368)
T 3uk6_A          213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEED  276 (368)
T ss_dssp             TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTT
T ss_pred             hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcC
Confidence            44             122234444443           357889999998  7766 455  89999999998887654 


Q ss_pred             -CCCHHHH
Q 019694          187 -NVADDDI  193 (337)
Q Consensus       187 -~l~~~~l  193 (337)
                       .++.+.+
T Consensus       277 ~~~~~~~l  284 (368)
T 3uk6_A          277 VEMSEDAY  284 (368)
T ss_dssp             CCBCHHHH
T ss_pred             CCCCHHHH
Confidence             3444433

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.67  E-value=8.2e-16  Score=145.84  Aligned_cols=158  Identities=13%  Similarity=0.083  Sum_probs=109.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .++..|||+||||||||++|+++|++++.+++.++++.+.      ....+...+..      ...+++|||||||.+..
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~vl~lDEi~~l~~  120 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN------LSEGDILFIDEIHRLSP  120 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT------CCTTCEEEEETGGGCCH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh------ccCCCEEEEechhhcCH
Confidence            4567899999999999999999999999999999987552      22222232222      35789999999997642


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCc-----cccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~-----~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                                   .....|+..+++.....+.+.     ......+++.+|++||+...++++|++  ||+..+.+  |+
T Consensus       121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~  185 (338)
T 3pfi_A          121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK  185 (338)
T ss_dssp             -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred             -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence                         123344455553221111111     001123368999999999999999987  89888888  99


Q ss_pred             HHHHHHHHHHhccCCC--CCHHHHHHHhcCCCch
Q 019694          172 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQ  203 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~ga  203 (337)
                      .+++..+++.+....+  ++.+.+..+...+.|.
T Consensus       186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~  219 (338)
T 3pfi_A          186 DSELALILQKAALKLNKTCEEKAALEIAKRSRST  219 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence            9999999988876554  5566666666655543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.60  E-value=9.2e-15  Score=136.56  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC------------CCCChHHHHHHHHHHHHHHHHhcC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~------------~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      ++..+||+||||||||++|+++|+.+   +.+++.++++.+...            +.|...   ...+..+   +....
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~---~~~~~~~---~~~~~  119 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE---GGQLTEA---VRRRP  119 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT---CCHHHHH---HHHCS
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccc---cchHHHH---HHhCC
Confidence            34579999999999999999999998   456888888765432            111110   0122222   23445


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC---------------
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND---------------  149 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~---------------  149 (337)
                      .+||||||+|.+..             .+...|+.++++.....  +........++++|+|||.               
T Consensus       120 ~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~  184 (311)
T 4fcw_A          120 YSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY  184 (311)
T ss_dssp             SEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred             CeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence            68999999997632             23345566665332211  1101123457789999998               


Q ss_pred             -----------CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccC-----------CCCCHHHHHHHhc-CC
Q 019694          150 -----------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TF  200 (337)
Q Consensus       150 -----------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~-----------~~l~~~~la~l~~-gf  200 (337)
                                 ...++++|+.  ||+..+.+  |+.+++.+|++.++..           ..++.+.+..+.. +|
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  258 (311)
T 4fcw_A          185 ERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY  258 (311)
T ss_dssp             STHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence                       5578888885  99887777  8999999998877643           1345566666555 44

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.60  E-value=2.2e-15  Score=129.06  Aligned_cols=124  Identities=14%  Similarity=0.139  Sum_probs=85.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM   85 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p   85 (337)
                      ..+..+||+||||||||++|+++++++          +.+++.++.+.+.  ..+.|.....++..+..+    . ...|
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  116 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ  116 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence            446789999999999999999999987          6777777766654  223344444555555554    4 3478


Q ss_pred             eEEEecccccccccCC-CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhcc
Q 019694           86 CCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR  159 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~-~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR  159 (337)
                      .+|||||+|.+...+. ...+.     .+...|..+++               ..++.+|++||.+.     .++++++|
T Consensus       117 ~vl~iDe~~~l~~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~  176 (187)
T 2p65_A          117 VVMFIDEIHTVVGAGAVAEGAL-----DAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER  176 (187)
T ss_dssp             EEEEETTGGGGSSSSSSCTTSC-----CTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred             eEEEEeCHHHhcccccccccch-----HHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence            9999999999875432 11111     12223333333               25678999999875     68999998


Q ss_pred             CCCceEEEeC
Q 019694          160 DGRMEKFYWA  169 (337)
Q Consensus       160 ~gR~d~~i~~  169 (337)
                        ||+. +.+
T Consensus       177 --R~~~-i~i  183 (187)
T 2p65_A          177 --RFQQ-ILV  183 (187)
T ss_dssp             --HEEE-EEC
T ss_pred             --hcCc-ccC
Confidence              8986 665

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.59  E-value=1.2e-14  Score=136.62  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=103.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      ..+..+||+||||||||++|++++++++.+++.++++.+..      ...+...|..+     ...+++|||||||.+..
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~  104 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR  104 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence            45678999999999999999999999999999998875522      22222222220     25788999999997642


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccc-----cCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~-----~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      .             ....|+.++++.....+.+...     .....++.+|+|||++..++++|.+  ||+..+.+  |+
T Consensus       105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~  169 (324)
T 1hqc_A          105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT  169 (324)
T ss_dssp             H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred             c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence            1             1233344444221111111100     0122468999999999999999986  88767777  99


Q ss_pred             HHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694          172 REDRIGVCKGIFRND--NVADDDIVKLVDTF  200 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~--~l~~~~la~l~~gf  200 (337)
                      .+++.+++..++...  .++.+.+..+....
T Consensus       170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~  200 (324)
T 1hqc_A          170 PEELAQGVMRDARLLGVRITEEAALEIGRRS  200 (324)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence            999999998887654  45555554444443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.58  E-value=6.1e-15  Score=147.23  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=97.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      +.+..+||+||||||||++|+++|+.+          +.+++.++++   .++.|+.+..++.+|..+    ....++||
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iL  271 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIIL  271 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEE
Confidence            445688999999999999999999997          7788888877   677787777788889888    77789999


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCc
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM  163 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~  163 (337)
                      |||      +..           .....|+..+               ..+.+.+|++||...     .+|++|.|  ||
T Consensus       272 fiD------~~~-----------~a~~~L~~~L---------------~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf  317 (468)
T 3pxg_A          272 FID------AAI-----------DASNILKPSL---------------ARGELQCIGATTLDEYRKYIEKDAALER--RF  317 (468)
T ss_dssp             EEC------C-------------------CCCT---------------TSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred             EEe------Cch-----------hHHHHHHHhh---------------cCCCEEEEecCCHHHHHHHhhcCHHHHH--hC
Confidence            999      110           0111221111               245789999999988     69999998  89


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccC----CC--CCH---HHHHHHhcCCCch
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFPGQ  203 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~----~~--l~~---~~la~l~~gf~ga  203 (337)
                      .. +.+  |+.+++.+|++.+...    .+  ++.   ..++.++.+|.+.
T Consensus       318 ~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~  367 (468)
T 3pxg_A          318 QP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD  367 (468)
T ss_dssp             EE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred             cc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence            86 666  9999999999988755    23  333   4455566665543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.57  E-value=6.5e-15  Score=142.29  Aligned_cols=140  Identities=16%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      +.+..+||+||||||||++|+++|+.++.+++.++++.+. .++.|.. ...+...+..+...+....++||||||+|.+
T Consensus        70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l  149 (376)
T 1um8_A           70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI  149 (376)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred             cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence            4567899999999999999999999999999999988875 4566654 3445555554422233457899999999998


Q ss_pred             cccCCCC-cccchhhHhHHHHHHhhhCCCccc-c-CCCc------cccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           97 AGRMGGT-TQYTVNNQMVNATLMNIADNPTCV-Q-LPGM------YNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        97 ~~~~~~~-~~~~~~~~~v~~~Ll~lld~~~~~-~-~~g~------~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                      ...+++. .........+...|+.+++..... . ..+.      .......++.+|+||| .+.+++++.|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~  220 (376)
T 1um8_A          150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK  220 (376)
T ss_dssp             --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHHTTT
T ss_pred             hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH
Confidence            8654321 111222223566777888733210 0 0000      0012246778899988 4445555544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.57  E-value=5.7e-15  Score=139.63  Aligned_cols=163  Identities=15%  Similarity=0.164  Sum_probs=100.4

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      .++.+...++ +.+.+++||||||||||++|+++++++   +.+++.+++.++...+.+.........|...     ...
T Consensus        25 ~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~   98 (324)
T 1l8q_A           25 VVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----YKS   98 (324)
T ss_dssp             HHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----HHT
T ss_pred             HHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----hcC
Confidence            3444444444 356789999999999999999999998   8899999887654322211111001122221     234


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC---CCcchhccCC
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDG  161 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~---~ld~aLlR~g  161 (337)
                      ++||||||+|.+.+...       .    .+.++.+++        ..   ...+..+||+++|.+.   .++++|++  
T Consensus        99 ~~vL~iDEi~~l~~~~~-------~----~~~l~~~l~--------~~---~~~~~~iii~~~~~~~~l~~l~~~L~s--  154 (324)
T 1l8q_A           99 VDLLLLDDVQFLSGKER-------T----QIEFFHIFN--------TL---YLLEKQIILASDRHPQKLDGVSDRLVS--  154 (324)
T ss_dssp             CSEEEEECGGGGTTCHH-------H----HHHHHHHHH--------HH---HHTTCEEEEEESSCGGGCTTSCHHHHH--
T ss_pred             CCEEEEcCcccccCChH-------H----HHHHHHHHH--------HH---HHCCCeEEEEecCChHHHHHhhhHhhh--
Confidence            88999999998754211       1    112222222        00   1122345555555555   68999987  


Q ss_pred             Cce--EEEeC-CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694          162 RME--KFYWA-PTREDRIGVCKGIFRND--NVADDDIVKLVDTF  200 (337)
Q Consensus       162 R~d--~~i~~-P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf  200 (337)
                      ||.  ..+.+ |+.+++.+|++.++...  .++.+.+..+....
T Consensus       155 R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~  198 (324)
T 1l8q_A          155 RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT  198 (324)
T ss_dssp             HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence            665  66777 77899999998887643  45666565555554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.56  E-value=1.8e-14  Score=143.14  Aligned_cols=127  Identities=17%  Similarity=0.214  Sum_probs=93.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG  101 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~  101 (337)
                      ..+|||||||||||++|+++|+.++.+++.++...       ...+.++..|..+........++||||||||.+.....
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q  123 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ  123 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence            58999999999999999999999999999988642       34566788888886555567899999999998743211


Q ss_pred             CCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe--CCCCCCcchhccCCCceEEEeC-CCHHHHHHH
Q 019694          102 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA-PTREDRIGV  178 (337)
Q Consensus       102 ~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT--N~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~I  178 (337)
                                   ..|+..++               ...+.+|++|  |....++++|++  |+..+..- |+.+++..+
T Consensus       124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i  173 (447)
T 3pvs_A          124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV  173 (447)
T ss_dssp             --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred             -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence                         11223333               1446777777  445689999998  66643333 999999999


Q ss_pred             HHHhccC
Q 019694          179 CKGIFRN  185 (337)
Q Consensus       179 l~~~~~~  185 (337)
                      ++..+..
T Consensus       174 l~~~l~~  180 (447)
T 3pvs_A          174 LTQAMED  180 (447)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9888765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.56  E-value=2.2e-14  Score=150.77  Aligned_cols=158  Identities=14%  Similarity=0.142  Sum_probs=111.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHhcCce
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      +.+..+||+||||||||++|+++|+.+          +..++.++.+.+.  .++.|+.+..++.+|..+    ....++
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~  280 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNS  280 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCE
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCe
Confidence            457789999999999999999999987          5667788777776  468889888899999888    767789


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----CCCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----~~ld~aLlR~g  161 (337)
                      ||||||+|.+.+..+. ...   .......|..++               ...++.+|++||.+     -.+|++|.|  
T Consensus       281 iL~IDEi~~l~~~~~~-~~~---~~~~~~~L~~~l---------------~~~~~~~I~at~~~~~~~~~~~d~aL~~--  339 (758)
T 1r6b_X          281 ILFIDEIHTIIGAGAA-SGG---QVDAANLIKPLL---------------SSGKIRVIGSTTYQEFSNIFEKDRALAR--  339 (758)
T ss_dssp             EEEETTTTTTTTSCCS-SSC---HHHHHHHHSSCS---------------SSCCCEEEEEECHHHHHCCCCCTTSSGG--
T ss_pred             EEEEechHHHhhcCCC-Ccc---hHHHHHHHHHHH---------------hCCCeEEEEEeCchHHhhhhhcCHHHHh--
Confidence            9999999999865431 111   112222332222               24578899999964     357899998  


Q ss_pred             CceEEEeC--CCHHHHHHHHHHhccC------CCCCH---HHHHHHhcCCCc
Q 019694          162 RMEKFYWA--PTREDRIGVCKGIFRN------DNVAD---DDIVKLVDTFPG  202 (337)
Q Consensus       162 R~d~~i~~--P~~~~R~~Il~~~~~~------~~l~~---~~la~l~~gf~g  202 (337)
                      ||.. +.+  |+.++|.+|++.+...      ..++.   ..++.++.+|..
T Consensus       340 Rf~~-i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~  390 (758)
T 1r6b_X          340 RFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN  390 (758)
T ss_dssp             GEEE-EECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred             CceE-EEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence            8984 666  9999999998876632      23444   344555555433

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.55  E-value=2.2e-14  Score=135.32  Aligned_cols=137  Identities=20%  Similarity=0.286  Sum_probs=95.2

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-hcCce
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMC   86 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~   86 (337)
                      .+++++.  ..+.|..+|++||||||||++|+++|++++.+++.+++++.     +  ...++..+........ .+.+.
T Consensus        37 ~l~~~l~--~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~--~~~i~~~~~~~~~~~~~~~~~~  107 (324)
T 3u61_B           37 TFKSITS--KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K--IDFVRGPLTNFASAASFDGRQK  107 (324)
T ss_dssp             HHHHHHH--TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C--HHHHHTHHHHHHHBCCCSSCEE
T ss_pred             HHHHHHH--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C--HHHHHHHHHHHHhhcccCCCCe
Confidence            3444444  33567889999999999999999999999999999998752     2  3445555444311111 23789


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEE
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF  166 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~  166 (337)
                      ||||||+|.+.+.            .....|+.+++             ....++.+|+|||.+..++++|++  |+.. 
T Consensus       108 vliiDEi~~l~~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~-  159 (324)
T 3u61_B          108 VIVIDEFDRSGLA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRV-  159 (324)
T ss_dssp             EEEEESCCCGGGH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEE-
T ss_pred             EEEEECCcccCcH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcE-
Confidence            9999999987411            12234444444             123557899999999999999998  6654 


Q ss_pred             EeC--CCHHHHHHHHHH
Q 019694          167 YWA--PTREDRIGVCKG  181 (337)
Q Consensus       167 i~~--P~~~~R~~Il~~  181 (337)
                      +.+  |+.++|.+|+..
T Consensus       160 i~~~~~~~~e~~~il~~  176 (324)
T 3u61_B          160 ITFGQPTDEDKIEMMKQ  176 (324)
T ss_dssp             EECCCCCHHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHH
Confidence            565  999987666433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.55  E-value=5.9e-14  Score=147.62  Aligned_cols=137  Identities=11%  Similarity=0.141  Sum_probs=97.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      .+||+||||||||++|+++|+.+   +.+++.++++++.+.+.....    ..+...    +...++||||||||++.. 
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~~~~-  593 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEKAHP-  593 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGGSCH-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccccCH-
Confidence            69999999999999999999997   678999999999887766521    122222    455778999999987521 


Q ss_pred             CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC------------CcchhccCCCceEEE
Q 019694          100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRMEKFY  167 (337)
Q Consensus       100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~------------ld~aLlR~gR~d~~i  167 (337)
                                  .+...|+.++++.......|  ......++.||+|||.+..            +.|+|+.  ||+..+
T Consensus       594 ------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i  657 (758)
T 3pxi_A          594 ------------DVFNILLQVLEDGRLTDSKG--RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEII  657 (758)
T ss_dssp             ------------HHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEE
T ss_pred             ------------HHHHHHHHHhccCeEEcCCC--CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEE
Confidence                        34456667776422221111  1234568899999997654            6788875  998888


Q ss_pred             eC--CCHHHHHHHHHHhcc
Q 019694          168 WA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       168 ~~--P~~~~R~~Il~~~~~  184 (337)
                      .+  |+.+++.+|++.++.
T Consensus       658 ~~~~l~~~~~~~i~~~~l~  676 (758)
T 3pxi_A          658 VFHSLEKKHLTEIVSLMSD  676 (758)
T ss_dssp             ECC--CHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHH
Confidence            88  888999999776653

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.55  E-value=5.6e-15  Score=157.49  Aligned_cols=157  Identities=17%  Similarity=0.187  Sum_probs=99.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHHh-cCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKM   85 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~~-~~p   85 (337)
                      +.+.++||+||||||||++|+++|+.+          +.+++.++.+.+.  .++.|+.+..++.+|..+    .. ..|
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~  264 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGE  264 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSS
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCC
Confidence            345678999999999999999999997          8889999998886  567888888888888887    64 478


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcchhccCC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDG  161 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~aLlR~g  161 (337)
                      +||||||+|.+.+..+...     ...+...|..++.               ...+.+|++||.++    .++++|+|  
T Consensus       265 ~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--  322 (854)
T 1qvr_A          265 VILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--  322 (854)
T ss_dssp             EEEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--
T ss_pred             eEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--
Confidence            9999999999875543111     1112222323332               35678999999775    47999998  


Q ss_pred             CceEEEeC--CCHHHHHHHHHHhcc------CCCCCH---HHHHHHhcCCCc
Q 019694          162 RMEKFYWA--PTREDRIGVCKGIFR------NDNVAD---DDIVKLVDTFPG  202 (337)
Q Consensus       162 R~d~~i~~--P~~~~R~~Il~~~~~------~~~l~~---~~la~l~~gf~g  202 (337)
                      ||+. +.+  |+.+++.+|++.++.      ...++.   ..++.++.+|..
T Consensus       323 Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~  373 (854)
T 1qvr_A          323 RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT  373 (854)
T ss_dssp             CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred             CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence            8886 555  999999999876654      223343   345566655533

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.54  E-value=4.5e-14  Score=134.36  Aligned_cols=138  Identities=11%  Similarity=0.044  Sum_probs=93.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccC----------C------CCChHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------N------AGEPAKLIRQ   71 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~----------~------~Ge~~~~ir~   71 (337)
                      ...|..++|+||||||||++++++++++          ...++.+++..+.+.          .      .|.....++.
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~  121 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF  121 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            3568899999999999999999999998          356788887765332          1      2344556667


Q ss_pred             HHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           72 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        72 ~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                      .|....  -....++||+|||+|.+.   .   +         ..|.++++          |......++.||+++|..+
T Consensus       122 ~f~~~~--~~~~~~~ii~lDE~d~l~---~---q---------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d  174 (318)
T 3te6_A          122 YITNVP--KAKKRKTLILIQNPENLL---S---E---------KILQYFEK----------WISSKNSKLSIICVGGHNV  174 (318)
T ss_dssp             HHHHSC--GGGSCEEEEEEECCSSSC---C---T---------HHHHHHHH----------HHHCSSCCEEEEEECCSSC
T ss_pred             HHHHhh--hccCCceEEEEecHHHhh---c---c---------hHHHHHHh----------cccccCCcEEEEEEecCcc
Confidence            776530  025678999999999986   1   1         12222222          1113457899999999987


Q ss_pred             CCcch----hccCCCce-EEEeC--CCHHHHHHHHHHhcc
Q 019694          152 TLYAP----LIRDGRME-KFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       152 ~ld~a----LlR~gR~d-~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      ..+..    +..  ||. ..+.+  ++.++..+|++..+.
T Consensus       175 ~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~  212 (318)
T 3te6_A          175 TIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK  212 (318)
T ss_dssp             CCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             cchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence            54433    333  564 34555  899999999776654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.54  E-value=1.8e-14  Score=151.62  Aligned_cols=125  Identities=15%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL   88 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il   88 (337)
                      +.+..+||+||||||||++|+++|+.+          +.+++.++.   ..+|.|+.+..++.+|..+    ....|+||
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iL  271 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIIL  271 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEE
Confidence            456679999999999999999999997          777887776   5667888888889999998    77889999


Q ss_pred             EecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCc
Q 019694           89 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM  163 (337)
Q Consensus        89 ~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~  163 (337)
                      |||         + ..       .....|+..               -..+.+.+|+|||...     .+|++|.|  ||
T Consensus       272 fiD---------~-~~-------~~~~~L~~~---------------l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf  317 (758)
T 3pxi_A          272 FID---------A-AI-------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RF  317 (758)
T ss_dssp             EEC---------C----------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred             EEc---------C-ch-------hHHHHHHHH---------------HhcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence            999         1 00       011122111               1245789999999998     79999999  88


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccC
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRN  185 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~  185 (337)
                      .. +++  |+.+++.+|++.+...
T Consensus       318 ~~-i~v~~p~~~~~~~il~~~~~~  340 (758)
T 3pxi_A          318 QP-IQVDQPSVDESIQILQGLRDR  340 (758)
T ss_dssp             EE-EECCCCCHHHHHHHHHHTTTT
T ss_pred             cE-EEeCCCCHHHHHHHHHHHHHH
Confidence            54 777  9999999999977654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.53  E-value=1.4e-13  Score=120.28  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH--HHhcCceEEEeccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA   95 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~--~~~~~p~Il~IDEiD~   95 (337)
                      .++|+||||||||++++++++++     ...++.++.+...      ....++..+......  .....+.+|+|||+|.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~  113 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA  113 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence            39999999999999999999986     3456667665322      112223332222100  0135789999999997


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +...             ....|+.+++             ....++.+|+|||.+..+++++.+  |+. .+.+  |+.+
T Consensus       114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~  164 (226)
T 2chg_A          114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKE  164 (226)
T ss_dssp             SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHH
T ss_pred             cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHH
Confidence            6421             1223444444             123567899999999999999987  676 5566  8899


Q ss_pred             HHHHHHHHhccCC--CCCHHHHHHHhc
Q 019694          174 DRIGVCKGIFRND--NVADDDIVKLVD  198 (337)
Q Consensus       174 ~R~~Il~~~~~~~--~l~~~~la~l~~  198 (337)
                      +..+++..++...  .++.+.+..+..
T Consensus       165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~  191 (226)
T 2chg_A          165 AMKKRLLEICEKEGVKITEDGLEALIY  191 (226)
T ss_dssp             HHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999988877533  355555544443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.53  E-value=3.5e-14  Score=136.09  Aligned_cols=153  Identities=13%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh-----------CCCcEEecCCccc-c-----------------CCCCChHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEPAKLI   69 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----------~~~~i~vs~s~l~-~-----------------~~~Ge~~~~i   69 (337)
                      ..|..++|+||||||||++|+++++++           +.+++.+++.... +                 ...|....  
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--  120 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLG--  120 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH--
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH--
Confidence            457799999999999999999999987           8889988866432 1                 01121111  


Q ss_pred             HHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC
Q 019694           70 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND  149 (337)
Q Consensus        70 r~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~  149 (337)
                       ..+......+....+ ||||||+|.+.....   +     ..   .+..+++         .    . .++.+|+|||.
T Consensus       121 -~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~~  173 (384)
T 2qby_B          121 -EYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISND  173 (384)
T ss_dssp             -HHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECSS
T ss_pred             -HHHHHHHHHhccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEECC
Confidence             122222222244444 999999998754321   0     11   0222223         1    1 67899999999


Q ss_pred             C---CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc----CCCCCH---HHHHHHhcCCCc
Q 019694          150 F---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVAD---DDIVKLVDTFPG  202 (337)
Q Consensus       150 ~---~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~----~~~l~~---~~la~l~~gf~g  202 (337)
                      .   +.+++++++  ||...+.+  |+.++..+|++..+.    ...++.   +.+++.+.+.+|
T Consensus       174 ~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G  236 (384)
T 2qby_B          174 INVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG  236 (384)
T ss_dssp             TTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred             CchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence            8   678999887  66556666  899999999888654    234554   445555654444

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.53  E-value=3.2e-14  Score=149.47  Aligned_cols=143  Identities=17%  Similarity=0.192  Sum_probs=99.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC-----CCCChHHHHH-----HHHHHHHHHHHhcCceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLIR-----QRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~-----~~Ge~~~~ir-----~~f~~A~~~~~~~~p~Il~I   90 (337)
                      ...+||+||||||||++|+++|+.++.+++.++++++...     .+|.+...+.     .+..    .++...++||||
T Consensus       488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~----~~~~~~~~vl~l  563 (758)
T 1r6b_X          488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTD----AVIKHPHAVLLL  563 (758)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHH----HHHHCSSEEEEE
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHH----HHHhCCCcEEEE
Confidence            3469999999999999999999999999999999887543     3343211111     1122    224556899999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-------------------
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------------  151 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-------------------  151 (337)
                      ||||++..             .+...|+.++++.....-.|.  .....+++||+|||...                   
T Consensus       564 DEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~  628 (758)
T 1r6b_X          564 DEIEKAHP-------------DVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDA  628 (758)
T ss_dssp             ETGGGSCH-------------HHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------C
T ss_pred             eCccccCH-------------HHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHHH
Confidence            99997521             244566677763221111111  12346789999999854                   


Q ss_pred             ------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          152 ------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       152 ------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                            .++|+|+.  |||.++.+  |+.+++..|+..++.
T Consensus       629 ~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~  667 (758)
T 1r6b_X          629 MEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV  667 (758)
T ss_dssp             HHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence                  67888885  99888888  889999999887764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.51  E-value=9.6e-14  Score=132.48  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC----------------CCCChHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQRY   73 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~f   73 (337)
                      ..+..++|+||||||||++++++++++         +..++.+++....+.                ..|.+..   ..+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~  118 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVG---EVY  118 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHH---HHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHH
Confidence            557799999999999999999999988         788888887653221                1222222   222


Q ss_pred             HHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCC-CCCceEEEEeCCC-
Q 019694           74 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF-  150 (337)
Q Consensus        74 ~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~-~~~V~vI~TTN~~-  150 (337)
                      ......+. .+.|+||||||+|.+.....        .   ...|..+++.        . .... ..++.+|+|||.+ 
T Consensus       119 ~~l~~~l~~~~~~~vlilDEi~~l~~~~~--------~---~~~l~~l~~~--------~-~~~~~~~~~~~I~~t~~~~  178 (387)
T 2v1u_A          119 ERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------G---QDLLYRITRI--------N-QELGDRVWVSLVGITNSLG  178 (387)
T ss_dssp             HHHHHHHTTSCSEEEEEEETTTHHHHSTT--------H---HHHHHHHHHG--------G-GCC-----CEEEEECSCST
T ss_pred             HHHHHHHhccCCeEEEEEccHhhhcccCC--------C---ChHHHhHhhc--------h-hhcCCCceEEEEEEECCCc
Confidence            22222223 45689999999998753320        1   1222222220        0 0011 4678999999998 


Q ss_pred             --CCCcchhccCCCceE-EEeC--CCHHHHHHHHHHhccC----CCCCH---HHHHHHhc
Q 019694          151 --STLYAPLIRDGRMEK-FYWA--PTREDRIGVCKGIFRN----DNVAD---DDIVKLVD  198 (337)
Q Consensus       151 --~~ld~aLlR~gR~d~-~i~~--P~~~~R~~Il~~~~~~----~~l~~---~~la~l~~  198 (337)
                        +.+++++.+  ||.. .+.+  |+.+++.+|++..+..    ..++.   +.+++.+.
T Consensus       179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~  236 (387)
T 2v1u_A          179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA  236 (387)
T ss_dssp             TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred             hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence              788899887  6643 5555  8899999998877642    34444   44555555

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.49  E-value=4.1e-14  Score=140.24  Aligned_cols=164  Identities=15%  Similarity=0.220  Sum_probs=97.7

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHh
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      .++.+...++.  +..++||||||||||+||+++++++     +.+++.+++.++...+.+.........|...    ..
T Consensus       119 ~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~  192 (440)
T 2z4s_A          119 AALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK----YR  192 (440)
T ss_dssp             HHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHH----HT
T ss_pred             HHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHH----hc
Confidence            33444444443  6789999999999999999999988     8888888887653221110000000112211    12


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCC---Ccchhc
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLI  158 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~---ld~aLl  158 (337)
                      ..+.||||||+|.+.+...       ....+..++..+.+                .+..+|+||++ +..   ++++|+
T Consensus       193 ~~~~vL~IDEi~~l~~~~~-------~q~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~~L~  249 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTG-------VQTELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDRLV  249 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHH-------HHHHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCHHHH
T ss_pred             CCCCEEEEeCcccccCChH-------HHHHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHHHHH
Confidence            2789999999998764311       11112222211111                22345556665 443   788988


Q ss_pred             cCCCce--EEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694          159 RDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG  202 (337)
Q Consensus       159 R~gR~d--~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g  202 (337)
                      +  ||.  ..+.+  |+.++|.+|++..+...  .++.+.+..++....|
T Consensus       250 s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g  297 (440)
T 2z4s_A          250 S--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD  297 (440)
T ss_dssp             H--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS
T ss_pred             h--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence            7  664  55666  99999999998887533  4555555555544444

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.47  E-value=4.4e-14  Score=142.56  Aligned_cols=153  Identities=16%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChH-------HHHHHHHHHHHHH-HHhcCceEEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADI-IKKGKMCCLMI   90 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~-------~~ir~~f~~A~~~-~~~~~p~Il~I   90 (337)
                      .+++++||+||||||||++|+++|++++.+++.++++++.+....+..       ..++..|..+... .....++||||
T Consensus        75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI  154 (516)
T 1sxj_A           75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM  154 (516)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence            367899999999999999999999999999999999876443211000       0011122221000 01367899999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--CCcchhccCCCceEEEe
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--~ld~aLlR~gR~d~~i~  168 (337)
                      ||+|.+.....    .      ....|.++++               ..+++||++||...  .+ +++.|   +...+.
T Consensus       155 DEid~l~~~~~----~------~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l-~~l~~---r~~~i~  205 (516)
T 1sxj_A          155 DEVDGMSGGDR----G------GVGQLAQFCR---------------KTSTPLILICNERNLPKM-RPFDR---VCLDIQ  205 (516)
T ss_dssp             CSGGGCCTTST----T------HHHHHHHHHH---------------HCSSCEEEEESCTTSSTT-GGGTT---TSEEEE
T ss_pred             ECCCccchhhH----H------HHHHHHHHHH---------------hcCCCEEEEEcCCCCccc-hhhHh---ceEEEE
Confidence            99998865321    1      1123334443               13445777777643  33 34543   333556


Q ss_pred             C--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694          169 A--PTREDRIGVCKGIFRND--NVADDDIVKLVDTF  200 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf  200 (337)
                      +  |+.+++.+++..++...  .++.+.+..++...
T Consensus       206 f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s  241 (516)
T 1sxj_A          206 FRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT  241 (516)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred             eCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence            5  99999999988776543  45665555555443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.45  E-value=3.6e-13  Score=118.88  Aligned_cols=146  Identities=12%  Similarity=0.134  Sum_probs=88.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC----------------ccccCC--CCChHHHHHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG----------------ELESGN--AGEPAKLIRQRYREAADII   80 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s----------------~l~~~~--~Ge~~~~ir~~f~~A~~~~   80 (337)
                      +.|..++|+||||||||+++++++++++.........                ++....  .......++.++.......
T Consensus        43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (250)
T 1njg_A           43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP  122 (250)
T ss_dssp             CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence            3466899999999999999999999875432110000                000000  0012223344443320000


Q ss_pred             HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      ....+.+|+|||+|.+..             .....|+.+++             ....++.+|+|||++..+++++.+ 
T Consensus       123 ~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~-  175 (250)
T 1njg_A          123 ARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS-  175 (250)
T ss_dssp             SSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred             hcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH-
Confidence            134689999999997521             11223444444             224568899999999999999887 


Q ss_pred             CCceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHH
Q 019694          161 GRMEKFYWA--PTREDRIGVCKGIFRND--NVADDDI  193 (337)
Q Consensus       161 gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~l  193 (337)
                       |+ ..+.+  |+.++..+++..++...  .++.+.+
T Consensus       176 -r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~  210 (250)
T 1njg_A          176 -RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRAL  210 (250)
T ss_dssp             -TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             -Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence             44 34556  89999999998887644  3444333

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.42  E-value=1.2e-12  Score=121.94  Aligned_cols=144  Identities=19%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH--hcCceEEEecccccc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMINDLDAG   96 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~--~~~p~Il~IDEiD~l   96 (337)
                      +||+||||||||++|+++++++     +.+++.+++++..+.  ..    ++...........  ...+.||+|||+|.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l  114 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DV----VRHKIKEFARTAPIGGAPFKIIFLDEADAL  114 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TT----SSHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HH----HHHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence            9999999999999999999986     345777877654321  11    1222222210001  256899999999976


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHH
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED  174 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~  174 (337)
                      ...             ....|+.+++             ....++.+|++||.+..+++++.+  |+. .+.+  |+.++
T Consensus       115 ~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~  165 (319)
T 2chq_A          115 TAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEA  165 (319)
T ss_dssp             CHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHH
T ss_pred             CHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHH
Confidence            321             1122333444             234678899999999999999987  555 4555  89999


Q ss_pred             HHHHHHHhccCCCC--CHHHHHHHhcCCCc
Q 019694          175 RIGVCKGIFRNDNV--ADDDIVKLVDTFPG  202 (337)
Q Consensus       175 R~~Il~~~~~~~~l--~~~~la~l~~gf~g  202 (337)
                      +.+++..++...++  +.+.+..+.....|
T Consensus       166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G  195 (319)
T 2chq_A          166 MKKRLLEICEKEGVKITEDGLEALIYISGG  195 (319)
T ss_dssp             HHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence            99999888876544  66666666654443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.42  E-value=7.5e-13  Score=123.52  Aligned_cols=151  Identities=15%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH---hcCceEEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMI   90 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~---~~~p~Il~I   90 (337)
                      +.|. +||+||||+|||++|+++++++     +..++.+++++..      ....++..+........   .+.+.||+|
T Consensus        41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii  113 (323)
T 1sxj_B           41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL  113 (323)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred             CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence            3455 9999999999999999999986     3456677665421      23445555544410000   335899999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      ||+|.+...             ....|+.+++             ....++.+|++||.++.+++++.+  |+. .+.+ 
T Consensus       114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~  164 (323)
T 1sxj_B          114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYS  164 (323)
T ss_dssp             ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECC
T ss_pred             ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hce-EEeec
Confidence            999976421             0122333333             223567899999999999999987  454 4555 


Q ss_pred             -CCHHHHHHHHHHhccCC--CCCHHH---HHHHhcCCCchhh
Q 019694          170 -PTREDRIGVCKGIFRND--NVADDD---IVKLVDTFPGQSI  205 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~~~--~l~~~~---la~l~~gf~gadl  205 (337)
                       |+.++..+++..++...  .++.+.   +++.+.|-....+
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~  206 (323)
T 1sxj_B          165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI  206 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence             89999999998877543  345543   4445544443333

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.41  E-value=5.8e-13  Score=118.65  Aligned_cols=145  Identities=15%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      .+..++|+||||||||++|+++++++.   ..++.++.+++......        .+.      ....+.+|+|||+|.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~vliiDe~~~~  116 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------GLEQFDLICIDDVDAV  116 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------TGGGSSEEEEETGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------hccCCCEEEEeccccc
Confidence            568999999999999999999999874   67788888776544311        111      1245789999999986


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC----CCcchhccCCCce--EEEeC-
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGRME--KFYWA-  169 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~----~ld~aLlR~gR~d--~~i~~-  169 (337)
                      .....           ....|+.+++        ..   .....+.+|+|||...    .+++++.+  |+.  ..+.+ 
T Consensus       117 ~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~  172 (242)
T 3bos_A          117 AGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ  172 (242)
T ss_dssp             TTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred             cCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence            43210           0122333332        00   1112333666666433    45677876  554  67777 


Q ss_pred             -CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694          170 -PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG  202 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g  202 (337)
                       |+.+++.+++..++...  .++.+.+..+...+.|
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g  208 (242)
T 3bos_A          173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR  208 (242)
T ss_dssp             CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence             99999999998887643  4566666666655544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.41  E-value=1.2e-12  Score=139.58  Aligned_cols=143  Identities=15%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----HHHHHHHHHHHHhcCceEEE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCLM   89 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~Il~   89 (337)
                      ..+||+||||||||++|+++++.+   +.+++.++++++...     .+|.+...+    ...|..+   ++...++|||
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~  665 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL  665 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence            589999999999999999999998   788999999877543     222211111    0122222   2445678999


Q ss_pred             ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC--------------------
Q 019694           90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--------------------  149 (337)
Q Consensus        90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~--------------------  149 (337)
                      |||||++.             ..+...|+.++++....  ++.-......+++||+|||.                    
T Consensus       666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~  730 (854)
T 1qvr_A          666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD  730 (854)
T ss_dssp             ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred             EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence            99998652             13455677777754322  11111223457889999997                    


Q ss_pred             ------CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          150 ------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       150 ------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                            ...+.|+|+.  |++..+.+  |+.++...|+..++.
T Consensus       731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~  771 (854)
T 1qvr_A          731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS  771 (854)
T ss_dssp             HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence                  2346677764  89877776  888999999776654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.40  E-value=1.8e-13  Score=129.71  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=83.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE----ecCCcc---------------------ccCCCCChHHHH------
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGEL---------------------ESGNAGEPAKLI------   69 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~----vs~s~l---------------------~~~~~Ge~~~~i------   69 (337)
                      +.++||+||||||||++|+++++.++...+.    +++...                     .....|.+...+      
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  124 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI  124 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence            3459999999999999999999998631100    011100                     000112221111      


Q ss_pred             HHHHHHHH-----HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCc-cccCCCccccCCCCCceE
Q 019694           70 RQRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        70 r~~f~~A~-----~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~-~~~~~g~~~~~~~~~V~v  143 (337)
                      ...+..+.     ..+....+++|||||||.+...             ....|+.+++... .+...|.. .....++.+
T Consensus       125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~l  190 (350)
T 1g8p_A          125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVL  190 (350)
T ss_dssp             HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEE
T ss_pred             hhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEE
Confidence            11222210     0111224789999999976321             1234444444211 11111210 111247899


Q ss_pred             EEEeCCCC-CCcchhccCCCceEEEeC--C-CHHHHHHHHHHhc
Q 019694          144 IVTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCKGIF  183 (337)
Q Consensus       144 I~TTN~~~-~ld~aLlR~gR~d~~i~~--P-~~~~R~~Il~~~~  183 (337)
                      |+|||..+ .++++|++  ||+..+.+  | +.+++.+|++..+
T Consensus       191 i~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~  232 (350)
T 1g8p_A          191 VGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD  232 (350)
T ss_dssp             EEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence            99999754 89999998  89887888  5 6788889987654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.39  E-value=3.7e-12  Score=120.56  Aligned_cols=139  Identities=12%  Similarity=0.188  Sum_probs=91.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC------CCcEEecCCccccCCCCChHHHHHHHHHHHHHH------------HHhcCc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGKM   85 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~------~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~------------~~~~~p   85 (337)
                      +||+||||||||++|+++|++++      ..++.+++++..      ....+++.+......            .....+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPY  134 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCc
Confidence            99999999999999999999864      356777766431      122333333222110            012356


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK  165 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~  165 (337)
                      .||||||+|.+...             ....|+.+++             ....++.+|++||.++.+++++.+  |+..
T Consensus       135 ~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~~  186 (353)
T 1sxj_D          135 KIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCSK  186 (353)
T ss_dssp             EEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSEE
T ss_pred             eEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCce
Confidence            79999999976421             1233444444             123456788899999999999987  6663


Q ss_pred             EEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHh
Q 019694          166 FYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV  197 (337)
Q Consensus       166 ~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~  197 (337)
                       +.+  |+.++...++...+...+  ++.+.+..++
T Consensus       187 -i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~  221 (353)
T 1sxj_D          187 -FRFKALDASNAIDRLRFISEQENVKCDDGVLERIL  221 (353)
T ss_dssp             -EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred             -EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence             445  889999999888876554  5554444433

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.37  E-value=5.3e-13  Score=126.32  Aligned_cols=142  Identities=12%  Similarity=0.086  Sum_probs=87.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHH-HHhcC---ceEEEecccc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPAKLIRQRYREAADI-IKKGK---MCCLMINDLD   94 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~-~~~~~---p~Il~IDEiD   94 (337)
                      ..++||+||||||||++|+++|+.++.+++.++++.-.  +...|..      .+...... .....   .+||||||+|
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~------~~~~~~~~~~~~~g~l~~~vl~iDEi~  119 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM------IYNQHKGNFEVKKGPVFSNFILADEVN  119 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE------EEETTTTEEEEEECTTCSSEEEEETGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce------eecCCCCceEeccCcccccEEEEEccc
Confidence            35799999999999999999999999999888763110  0000000      00000000 00111   3799999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----CCcchhccCCCceEEEeC
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYWA  169 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----~ld~aLlR~gR~d~~i~~  169 (337)
                      .+..             .....|++.++... +.+.|.. .....++.||+|+|..+     .++++|++  ||+..+.+
T Consensus       120 ~~~~-------------~~~~~Ll~~l~~~~-~~~~g~~-~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i  182 (331)
T 2r44_A          120 RSPA-------------KVQSALLECMQEKQ-VTIGDTT-YPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHL  182 (331)
T ss_dssp             GSCH-------------HHHHHHHHHHHHSE-EEETTEE-EECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEEC
T ss_pred             cCCH-------------HHHHHHHHHHhcCc-eeeCCEE-EECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEc
Confidence            7532             12233444444211 1112211 11234677888888443     38999997  88877777


Q ss_pred             --CCHHHHHHHHHHhccC
Q 019694          170 --PTREDRIGVCKGIFRN  185 (337)
Q Consensus       170 --P~~~~R~~Il~~~~~~  185 (337)
                        |+.+++.+|++.....
T Consensus       183 ~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          183 TYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             CCCCHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHhcccc
Confidence              9999999999888764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.36  E-value=1.4e-12  Score=109.53  Aligned_cols=91  Identities=10%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      .+..|||+||||||||++|+++++..   +.+|+ ++++.+.+.      ......|..|       ..++|||||||.+
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l   88 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL   88 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence            34569999999999999999999987   67888 988876554      1234556666       5689999999976


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                      ...             .+..|+.++.             ....++.+|+|||.+
T Consensus        89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~  116 (145)
T 3n70_A           89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS  116 (145)
T ss_dssp             CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred             CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence            321             1233444443             223467899999974

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.35  E-value=2e-11  Score=116.28  Aligned_cols=157  Identities=13%  Similarity=0.083  Sum_probs=98.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      .++..++|+||||||||+|++++|+.++.++...+++.+..      ...+...+..      .....|+||||++.+..
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~  116 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK  116 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence            45677999999999999999999999999887777654321      2223332221      23568999999997642


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCcc-ccC-CCc---cccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQL-PGM---YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~-~g~---~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                              +     +...|+..+..... +.+ .+.   ........+.+|++||++..|++++++  ||...+.+  |+
T Consensus       117 --------~-----~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~  181 (334)
T 1in4_A          117 --------A-----VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT  181 (334)
T ss_dssp             --------H-----HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred             --------H-----HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence                    1     11222222221100 000 000   000123457788899999999999987  78766666  99


Q ss_pred             HHHHHHHHHHhccCC--CCCHHHHHHHhcCCCc
Q 019694          172 REDRIGVCKGIFRND--NVADDDIVKLVDTFPG  202 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~--~l~~~~la~l~~gf~g  202 (337)
                      .+++.+|++......  .++.+.+..++....|
T Consensus       182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G  214 (334)
T 1in4_A          182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG  214 (334)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC
Confidence            999999998776543  4555555555554444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.34  E-value=9e-12  Score=118.51  Aligned_cols=154  Identities=15%  Similarity=0.227  Sum_probs=95.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCcccc----------C------CCCChHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------G------NAGEPAKLIRQRYREA   76 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l~~----------~------~~Ge~~~~ir~~f~~A   76 (337)
                      ..+..++|+||||||||++++++++++      +..++.+++....+          .      ..|.+.   ...+...
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~l  119 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSI---AELYRRL  119 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCH---HHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHH
Confidence            557789999999999999999999988      88888888653211          0      112222   2223333


Q ss_pred             HHHHHh-cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC---CC
Q 019694           77 ADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST  152 (337)
Q Consensus        77 ~~~~~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---~~  152 (337)
                      .+.+.. ..|+||+|||+|.+....+    .     .....|+..++        .    ....++.+|++||++   ..
T Consensus       120 ~~~l~~~~~~~vlilDE~~~l~~~~~----~-----~~l~~l~~~~~--------~----~~~~~~~~I~~~~~~~~~~~  178 (386)
T 2qby_A          120 VKAVRDYGSQVVIVLDEIDAFVKKYN----D-----DILYKLSRINS--------E----VNKSKISFIGITNDVKFVDL  178 (386)
T ss_dssp             HHHHHTCCSCEEEEEETHHHHHHSSC----S-----THHHHHHHHHH--------S----CCC--EEEEEEESCGGGGGG
T ss_pred             HHHHhccCCeEEEEEcChhhhhccCc----C-----HHHHHHhhchh--------h----cCCCeEEEEEEECCCChHhh
Confidence            223343 4599999999998764321    0     11223333333        1    134578999999987   46


Q ss_pred             CcchhccCCCce-EEEeC--CCHHHHHHHHHHhcc----CCCCCHH---HHHHHhc
Q 019694          153 LYAPLIRDGRME-KFYWA--PTREDRIGVCKGIFR----NDNVADD---DIVKLVD  198 (337)
Q Consensus       153 ld~aLlR~gR~d-~~i~~--P~~~~R~~Il~~~~~----~~~l~~~---~la~l~~  198 (337)
                      +++.+.+  ||. +.+.+  ++.++..+|+...+.    ...++.+   .++..+.
T Consensus       179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~  232 (386)
T 2qby_A          179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA  232 (386)
T ss_dssp             CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred             hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence            7788877  442 35555  889999999887653    2345543   3444454

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.34  E-value=9.1e-12  Score=119.11  Aligned_cols=149  Identities=11%  Similarity=0.138  Sum_probs=94.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccC----------------CCCChHHHHHHHHHHHHHHHH-
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK-   81 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~f~~A~~~~~-   81 (337)
                      .++|+||||||||++++++++.+    +..++.++++...+.                ..|.+..   ..+......+. 
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~~l~~~l~~  122 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRD---EFLALLVEHLRE  122 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHH---HHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHH---HHHHHHHHHHhh
Confidence            89999999999999999999998    667888886543210                0121211   22222222223 


Q ss_pred             hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC---CCCcchhc
Q 019694           82 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLI  158 (337)
Q Consensus        82 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---~~ld~aLl  158 (337)
                      ...|.||+|||+|.+    .         ......|+.++++        . ......++.||++||++   +.+++.+.
T Consensus       123 ~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~~--------~-~~~~~~~~~iI~~~~~~~~~~~l~~~~~  180 (389)
T 1fnn_A          123 RDLYMFLVLDDAFNL----A---------PDILSTFIRLGQE--------A-DKLGAFRIALVIVGHNDAVLNNLDPSTR  180 (389)
T ss_dssp             TTCCEEEEEETGGGS----C---------HHHHHHHHHHTTC--------H-HHHSSCCEEEEEEESSTHHHHTSCHHHH
T ss_pred             cCCeEEEEEECcccc----c---------hHHHHHHHHHHHh--------C-CCCCcCCEEEEEEECCchHHHHhCHHhh
Confidence            456899999999976    1         1222334444431        1 00012578999999998   67888887


Q ss_pred             cCCCceE-EEeC--CCHHHHHHHHHHhccC----CCCCHH---HHHHHhc
Q 019694          159 RDGRMEK-FYWA--PTREDRIGVCKGIFRN----DNVADD---DIVKLVD  198 (337)
Q Consensus       159 R~gR~d~-~i~~--P~~~~R~~Il~~~~~~----~~l~~~---~la~l~~  198 (337)
                      +  ||.. .+.+  ++.++..+++...+..    ..++.+   .+++.+.
T Consensus       181 ~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  228 (389)
T 1fnn_A          181 G--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG  228 (389)
T ss_dssp             H--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred             h--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence            6  5553 4566  7888899998776643    356664   4455553

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.34  E-value=6.6e-12  Score=119.67  Aligned_cols=153  Identities=12%  Similarity=0.102  Sum_probs=99.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      -+.|.++||+||||+|||++|+++|+.+...                        ++.+...+   +-...+...++++.
T Consensus        21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~   97 (334)
T 1a5t_A           21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVT   97 (334)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHH
T ss_pred             CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHH
Confidence            3678899999999999999999999988643                        22222210   00011234566666


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      +.+...-..+...|++|||+|.+...            . ...|+..++             ++..++.+|++||+++.+
T Consensus        98 ~~~~~~~~~~~~kvviIdead~l~~~------------a-~naLLk~lE-------------ep~~~~~~Il~t~~~~~l  151 (334)
T 1a5t_A           98 EKLNEHARLGGAKVVWVTDAALLTDA------------A-ANALLKTLE-------------EPPAETWFFLATREPERL  151 (334)
T ss_dssp             HHTTSCCTTSSCEEEEESCGGGBCHH------------H-HHHHHHHHT-------------SCCTTEEEEEEESCGGGS
T ss_pred             HHHhhccccCCcEEEEECchhhcCHH------------H-HHHHHHHhc-------------CCCCCeEEEEEeCChHhC
Confidence            66511111346789999999986321            1 123444555             345678899999999999


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHH---HHHHHhcCCCchhh
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSI  205 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~---~la~l~~gf~gadl  205 (337)
                      ++++++  |+.. +.+  |+.++..+++....   .++.+   .+++++.|-.+..+
T Consensus       152 ~~ti~S--Rc~~-~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r~a~  202 (334)
T 1a5t_A          152 LATLRS--RCRL-HYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPGAAL  202 (334)
T ss_dssp             CHHHHT--TSEE-EECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHH
T ss_pred             cHHHhh--ccee-eeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHH
Confidence            999987  5543 555  89999999988776   45554   34555555444443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.32  E-value=4.7e-12  Score=120.75  Aligned_cols=143  Identities=13%  Similarity=0.160  Sum_probs=91.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR   74 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f~   74 (337)
                      +.|..+||+||||||||++|+++|+.++..                        ++.++.+.    .  .....++.++.
T Consensus        36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~  109 (373)
T 1jr3_A           36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD  109 (373)
T ss_dssp             CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence            456789999999999999999999988642                        22232221    0  11122445555


Q ss_pred             HHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc
Q 019694           75 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY  154 (337)
Q Consensus        75 ~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld  154 (337)
                      .+......+.+.||+|||+|.+...             ....|+..++             ....++.+|++||++..++
T Consensus       110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~  163 (373)
T 1jr3_A          110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP  163 (373)
T ss_dssp             HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred             HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence            4411001346789999999976311             1223444444             2345688999999999999


Q ss_pred             chhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHH
Q 019694          155 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKL  196 (337)
Q Consensus       155 ~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l  196 (337)
                      +++.+  |+ ..+.+  |+.++..++++.++...+  ++.+.+..+
T Consensus       164 ~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l  206 (373)
T 1jr3_A          164 VTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL  206 (373)
T ss_dssp             HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred             HHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            99886  45 34555  899999999988876544  444433333

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.32  E-value=1.3e-12  Score=119.75  Aligned_cols=135  Identities=16%  Similarity=0.212  Sum_probs=79.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccC-----CCCChHHHHHHHHHHHH----HHHHhcCceE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-----NAGEPAKLIRQRYREAA----DIIKKGKMCC   87 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~-----~~Ge~~~~ir~~f~~A~----~~~~~~~p~I   87 (337)
                      .+..|||+||||||||++|+++++.+.   .+++.++++.+...     ..|..    ...|..+.    ..+.....++
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~----~~~~~g~~~~~~~~l~~a~~~~  103 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE----AGAFTGAQKRHPGRFERADGGT  103 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-------------CCCCHHHHTTTSE
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCc----ccccccccccccchhhhcCCcE
Confidence            356799999999999999999999875   67999998865211     01110    00111110    1112235689


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcchhccC
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIRD  160 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~aLlR~  160 (337)
                      |||||||.+..             .....|+.+++........+.  .....++.||+|||..       ..+.++|.. 
T Consensus       104 l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~-  167 (265)
T 2bjv_A          104 LFLDELATAPM-------------MVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD-  167 (265)
T ss_dssp             EEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH-
T ss_pred             EEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH-
Confidence            99999997642             122344555553221111111  1123568899999984       246778876 


Q ss_pred             CCce-EEEeCCCHHHH
Q 019694          161 GRME-KFYWAPTREDR  175 (337)
Q Consensus       161 gR~d-~~i~~P~~~~R  175 (337)
                       ||. ..+.+|...+|
T Consensus       168 -Rl~~~~i~lp~L~~R  182 (265)
T 2bjv_A          168 -ALAFDVVQLPPLRER  182 (265)
T ss_dssp             -HHCSEEEECCCGGGC
T ss_pred             -hhcCcEEeCCChhhh
Confidence             775 45667777655

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.31  E-value=6.7e-12  Score=117.21  Aligned_cols=140  Identities=18%  Similarity=0.218  Sum_probs=90.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHH--HHhcCceEEEeccccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA   95 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~--~~~~~p~Il~IDEiD~   95 (337)
                      .+||+||||||||++|+++++++.     ..++.+++++..+      ...++.........  .....+.||+|||+|.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~  121 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA  121 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence            499999999999999999999863     2356666553211      11222222222100  0125689999999997


Q ss_pred             ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHH
Q 019694           96 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus        96 l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                      +...             ....|+.+++             .....+.+|+|||.++.+++++.+  |+. .+.+  |+.+
T Consensus       122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~  172 (327)
T 1iqp_A          122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDE  172 (327)
T ss_dssp             SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHH
T ss_pred             CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHH
Confidence            6321             1233444444             223567899999999999999987  565 4555  8889


Q ss_pred             HHHHHHHHhccCCC--CCHHHHHHHh
Q 019694          174 DRIGVCKGIFRNDN--VADDDIVKLV  197 (337)
Q Consensus       174 ~R~~Il~~~~~~~~--l~~~~la~l~  197 (337)
                      +..+++..++...+  ++.+.+..+.
T Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~l~  198 (327)
T 1iqp_A          173 DIAKRLRYIAENEGLELTEEGLQAIL  198 (327)
T ss_dssp             HHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999988876655  4554444333

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.30  E-value=7.1e-12  Score=118.18  Aligned_cols=159  Identities=14%  Similarity=0.199  Sum_probs=92.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc-----C--------CCCChHHHHHHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G--------NAGEPAKLIRQRYREAADIIKK   82 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~-----~--------~~Ge~~~~ir~~f~~A~~~~~~   82 (337)
                      +.+..|||+||||||||++|+++++..   +.+|+.++++.+..     .        +.|... .....|..|      
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------   95 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------   95 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence            446779999999999999999999965   57899998876532     1        111110 112344445      


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-------CCCcc
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYA  155 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-------~~ld~  155 (337)
                       ..++|||||||.+..             .....|+.+++......+.+.  .....++.||+|||..       ..+++
T Consensus        96 -~~g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~  159 (304)
T 1ojl_A           96 -DGGTLFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ  159 (304)
T ss_dssp             -TTSEEEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred             -CCCEEEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence             568999999997632             123445566663322222221  1224568999999985       23444


Q ss_pred             hhccCCCce-EEEeCCCHHHHHH----HHHHhcc---------CCCCCHHHHHHHhcC-CCc
Q 019694          156 PLIRDGRME-KFYWAPTREDRIG----VCKGIFR---------NDNVADDDIVKLVDT-FPG  202 (337)
Q Consensus       156 aLlR~gR~d-~~i~~P~~~~R~~----Il~~~~~---------~~~l~~~~la~l~~g-f~g  202 (337)
                      +|..  ||. ..+.+|...+|.+    ++..++.         ...++.+.+..+... |+|
T Consensus       160 ~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG  219 (304)
T 1ojl_A          160 DLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG  219 (304)
T ss_dssp             HHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred             HHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence            4443  453 3355677665532    3433321         124566666655543 354

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.29  E-value=4.6e-13  Score=137.52  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=86.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe----cCCccccCCC-----CChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNA-----GEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v----s~s~l~~~~~-----Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .|||+||||||||++|+++|+.++..++..    +.+.+.....     |.. ..-...+..|       ..+|||||||
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~G~l~~A-------~~gil~IDEi  400 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEY-YLEAGALVLA-------DGGIAVIDEI  400 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSC-SEEECHHHHH-------SSSEECCTTT
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccc-cccCCeeEec-------CCCcEEeehh
Confidence            799999999999999999999987654432    2222221111     110 0000123333       5689999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCcccc-CCCccccCCCCCceEEEEeCCCC-------------CCcchhcc
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQ-LPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR  159 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~-~~g~~~~~~~~~V~vI~TTN~~~-------------~ld~aLlR  159 (337)
                      |++..             .....|++.+++.+... -.|. ......++.||+|||...             .|++||++
T Consensus       401 d~l~~-------------~~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~  466 (595)
T 3f9v_A          401 DKMRD-------------EDRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS  466 (595)
T ss_dssp             TCCCS-------------HHHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred             hhCCH-------------hHhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence            98632             12345566666332110 1111 112346789999999886             89999998


Q ss_pred             CCCceEEEeC---CCHHHHHHHHHHhccC
Q 019694          160 DGRMEKFYWA---PTREDRIGVCKGIFRN  185 (337)
Q Consensus       160 ~gR~d~~i~~---P~~~~R~~Il~~~~~~  185 (337)
                        |||..+.+   |+.+ ...|.+.++..
T Consensus       467 --RFDl~~~~~~~~~~e-~~~i~~~il~~  492 (595)
T 3f9v_A          467 --RFDLIFILKDQPGEQ-DRELANYILDV  492 (595)
T ss_dssp             --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred             --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence              99865554   7777 77787776654

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.28  E-value=3.6e-12  Score=147.99  Aligned_cols=143  Identities=12%  Similarity=0.137  Sum_probs=91.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHH-HHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH-----------hcCceE
Q 019694           20 VPLILGIWGGKGQGKSFQCELV-FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCC   87 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~ai-A~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~I   87 (337)
                      ..++|||+||||||||++|+.+ ++..+..++.++.+...      +...+...+....+..+           .++++|
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence            4579999999999999999554 44446677777766432      22334444443211000           234579


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccC-----CCCCceEEEEeCCCC-----CCcchh
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS-----TLYAPL  157 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~-----~~~~V~vI~TTN~~~-----~ld~aL  157 (337)
                      |||||||.-...+.| +      +....+|.++++.      .|.|...     ...++.+|+|||.+.     .|+++|
T Consensus      1340 lFiDEinmp~~d~yg-~------q~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rl 1406 (2695)
T 4akg_A         1340 LFCDEINLPKLDKYG-S------QNVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERF 1406 (2695)
T ss_dssp             EEEETTTCSCCCSSS-C------CHHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHH
T ss_pred             EEecccccccccccC-c------hhHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhh
Confidence            999999964433321 2      2233444444442      2333321     125689999999994     899999


Q ss_pred             ccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          158 IRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       158 lR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      +|  || ..+++  |+.+++..|+..++.
T Consensus      1407 lR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A         1407 TR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp             HT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred             hh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence            99  67 55666  999999999777663

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.28  E-value=8.8e-13  Score=110.57  Aligned_cols=91  Identities=12%  Similarity=0.006  Sum_probs=64.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      .+..|||+||||||||++|+++++..+ +++.++++.+...+       ....|..|       ..++|||||||.+...
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~   90 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN   90 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH
Confidence            355699999999999999999999888 89989888654332       34555555       5689999999976321


Q ss_pred             CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC
Q 019694          100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF  150 (337)
Q Consensus       100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~  150 (337)
                                   ....|+.+++.            ....++.+|+|||..
T Consensus        91 -------------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~  116 (143)
T 3co5_A           91 -------------IQTGITFIIGK------------AERCRVRVIASCSYA  116 (143)
T ss_dssp             -------------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred             -------------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence                         12334444441            114567899999965

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.28  E-value=4.8e-12  Score=127.31  Aligned_cols=140  Identities=13%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC-----ccccCCCCChHHHHHHHHHHHHHHHHhc---CceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-----ELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s-----~l~~~~~Ge~~~~ir~~f~~A~~~~~~~---~p~Il~I   90 (337)
                      ...|||+||||||||++|+++|+.++.  +|..++..     ++.+.+.+..... ...|..+    ..+   .++||||
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~I  115 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFL  115 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEE
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeH
Confidence            358999999999999999999998854  33333332     2222222221100 1222222    222   4679999


Q ss_pred             cccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCC---CcchhccCCCceEEE
Q 019694           91 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFY  167 (337)
Q Consensus        91 DEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~---ld~aLlR~gR~d~~i  167 (337)
                      |||+.+..             .+...|+.+++... +...|..  ...+..++|+|||....   +.+++++  ||...+
T Consensus       116 DEI~r~~~-------------~~q~~LL~~lee~~-v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i  177 (500)
T 3nbx_X          116 DEIWKAGP-------------AILNTLLTAINERQ-FRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRL  177 (500)
T ss_dssp             ESGGGCCH-------------HHHHHHHHHHHSSE-EECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEE
T ss_pred             HhHhhhcH-------------HHHHHHHHHHHHHh-ccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHH
Confidence            99975321             23445666665322 2223321  22233357889986332   3348887  888888


Q ss_pred             eC--CCH-HHHHHHHHHhc
Q 019694          168 WA--PTR-EDRIGVCKGIF  183 (337)
Q Consensus       168 ~~--P~~-~~R~~Il~~~~  183 (337)
                      ++  |+. +++.+|++...
T Consensus       178 ~v~~p~~~ee~~~IL~~~~  196 (500)
T 3nbx_X          178 WLDKVQDKANFRSMLTSQQ  196 (500)
T ss_dssp             ECCSCCCHHHHHHHHTCCC
T ss_pred             HHHHhhhhhhHHHHHhccc
Confidence            88  665 77889987665

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.26  E-value=5e-11  Score=113.21  Aligned_cols=135  Identities=16%  Similarity=0.350  Sum_probs=82.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----------------------------cEEecCCccccCCCCC-hHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGELESGNAGE-PAKL   68 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----------------------------~i~vs~s~l~~~~~Ge-~~~~   68 (337)
                      +.|. ++|+||||+|||++++++++++..+                             ++.++.+.     .+. ....
T Consensus        35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  108 (354)
T 1sxj_E           35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIV  108 (354)
T ss_dssp             CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHH
T ss_pred             CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHH
Confidence            4455 9999999999999999999975211                             12222211     111 1113


Q ss_pred             HHHHHHHHHHHHH----------hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC
Q 019694           69 IRQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN  138 (337)
Q Consensus        69 ir~~f~~A~~~~~----------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~  138 (337)
                      +++....+.....          ...|.||+|||+|.+..             .....|+..++             ...
T Consensus       109 ~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~  162 (354)
T 1sxj_E          109 IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYS  162 (354)
T ss_dssp             HHHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HST
T ss_pred             HHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhc
Confidence            4444444311000          23678999999997421             11223334444             123


Q ss_pred             CCceEEEEeCCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694          139 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       139 ~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l  188 (337)
                      .++.+|++||+++.+.+++.+  |+ ..+.+  |+.++..++++.++...++
T Consensus       163 ~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~  211 (354)
T 1sxj_E          163 KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI  211 (354)
T ss_dssp             TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999986  55 44555  8999999999888765443

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.23  E-value=2.8e-11  Score=114.41  Aligned_cols=160  Identities=8%  Similarity=-0.012  Sum_probs=100.0

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +..+++.++...   +..+|||||||+|||++|+++|+.+      ...++.++++.   ..  .+...+|++.+.+...
T Consensus         6 ~~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~   77 (305)
T 2gno_A            6 LETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IGIDDIRTIKDFLNYS   77 (305)
T ss_dssp             HHHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BCHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhc
Confidence            344445544433   4589999999999999999999874      33566666531   11  2334577777776111


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                      -..+...|+||||+|.+...            . ...|+..++             ++.+.+.+|++||.++.|.++++.
T Consensus        78 p~~~~~kvviIdead~lt~~------------a-~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S  131 (305)
T 2gno_A           78 PELYTRKYVIVHDCERMTQQ------------A-ANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS  131 (305)
T ss_dssp             CSSSSSEEEEETTGGGBCHH------------H-HHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT
T ss_pred             cccCCceEEEeccHHHhCHH------------H-HHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc
Confidence            01234579999999986321            1 223444444             445677888889999999999987


Q ss_pred             CCCceEEEeCCCHHHHHHHHHHhccCCCCCHHHHHHHhcCCCchhhH
Q 019694          160 DGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID  206 (337)
Q Consensus       160 ~gR~d~~i~~P~~~~R~~Il~~~~~~~~l~~~~la~l~~gf~gadl~  206 (337)
                        | -..+..|+.++..+++...+   +++.+.+ .+..|-.+..+.
T Consensus       132 --R-~~~f~~l~~~~i~~~L~~~~---~i~~~~~-~~~~g~~~~al~  171 (305)
T 2gno_A          132 --R-VFRVVVNVPKEFRDLVKEKI---GDLWEEL-PLLERDFKTALE  171 (305)
T ss_dssp             --T-SEEEECCCCHHHHHHHHHHH---TTHHHHC-GGGGTCHHHHHH
T ss_pred             --e-eEeCCCCCHHHHHHHHHHHh---CCCHHHH-HHHCCCHHHHHH
Confidence              4 22222388888888887776   3554433 344444444433

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.21  E-value=1.4e-10  Score=110.24  Aligned_cols=137  Identities=13%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC-----CcEEecCCccccCCCCChHHHHHHHHHHHHHHHH--hcCceEEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLMIN   91 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~-----~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~--~~~p~Il~ID   91 (337)
                      +.|. +||+||||||||++++++|+.+..     .++.++.++.    .  ....+++......+...  ...+.|++||
T Consensus        45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~--~~~~ir~~i~~~~~~~~~~~~~~~viiiD  117 (340)
T 1sxj_C           45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----R--GIDVVRNQIKDFASTRQIFSKGFKLIILD  117 (340)
T ss_dssp             CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----C--SHHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred             CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----c--cHHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence            3454 999999999999999999998632     3455555432    1  12344444433311000  1247899999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--  169 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--  169 (337)
                      |+|.+...             ....|+..++             .....+.+|++||.+..+.++++.  |+.. +.+  
T Consensus       118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~-~~~~~  168 (340)
T 1sxj_C          118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTR-FRFQP  168 (340)
T ss_dssp             TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEE-EECCC
T ss_pred             CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hcee-EeccC
Confidence            99976321             1223444444             223456788999999999999987  6654 444  


Q ss_pred             CCHHHHHHHHHHhccCC--CCCHH
Q 019694          170 PTREDRIGVCKGIFRND--NVADD  191 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~--~l~~~  191 (337)
                      ++.++..+++...+...  +++.+
T Consensus       169 l~~~~~~~~l~~~~~~~~~~i~~~  192 (340)
T 1sxj_C          169 LPQEAIERRIANVLVHEKLKLSPN  192 (340)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCBCHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHH
Confidence            78888888888877544  44543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.11  E-value=9.6e-11  Score=131.36  Aligned_cols=115  Identities=14%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             CCcE--EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc------------cCCCCC----hHHHHHHHHHHHHH
Q 019694           20 VPLI--LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD   78 (337)
Q Consensus        20 ~p~g--iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~------------~~~~Ge----~~~~ir~~f~~A~~   78 (337)
                      +|+|  +|||||||||||+||++++.+.   |-+.+.++..+..            ++|+++    +++.++.+|..|  
T Consensus      1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A         1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred             CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence            4555  9999999999999999998876   4455555555533            677888    899999999888  


Q ss_pred             HHHhcCceEEEecccccccccCC---C--CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC
Q 019694           79 IIKKGKMCCLMINDLDAGAGRMG---G--TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS  151 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~~~~---~--~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~  151 (337)
                        +...||+||+|++|+++++++   .  ..+.....+.++++|.++ +        +.   ....+|+|| +||+..
T Consensus      1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~-~--------~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A         1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL-A--------GN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp             --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH-H--------HH---HHHTTCEEE-EEECEE
T ss_pred             --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH-H--------hh---hccCCeEEE-Eecccc
Confidence              999999999999999997732   1  112234445566666433 2        22   445677666 777643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.11  E-value=3.4e-10  Score=97.60  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccCCCCChHHHHHHHHHHHH--
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA--   77 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~--   77 (337)
                      -+...++.|.....+....+++|+||||||||+|+++++..+    |..++.++..++...        +...+....  
T Consensus        21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~~~~   92 (180)
T 3ec2_A           21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR--------LKHLMDEGKDT   92 (180)
T ss_dssp             HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH--------HHHHHHHTCCS
T ss_pred             HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHhcCchHH
Confidence            345666777776666678899999999999999999999876    556666665544321        111111100  


Q ss_pred             H-HHHhcCceEEEecccccc
Q 019694           78 D-IIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        78 ~-~~~~~~p~Il~IDEiD~l   96 (337)
                      . +..-..|.+|+|||++..
T Consensus        93 ~~~~~~~~~~llilDE~~~~  112 (180)
T 3ec2_A           93 KFLKTVLNSPVLVLDDLGSE  112 (180)
T ss_dssp             HHHHHHHTCSEEEEETCSSS
T ss_pred             HHHHHhcCCCEEEEeCCCCC
Confidence            0 112347899999999753

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=99.05  E-value=1.9e-10  Score=109.29  Aligned_cols=123  Identities=16%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC--cEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~--~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .|+.....++|+||||||||+||.++|.+.|..  |+.....+..+.+..+.+..++.+++..    .+..  +|+||+|
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI  191 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSL  191 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECC
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEecc
Confidence            455666778999999999999999999876544  5555224444444444444444444333    4444  9999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                      +.+.....+........+.+.+.|..+..         .   ....++.+|+++| +...++++
T Consensus       192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal  242 (331)
T 2vhj_A          192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI  242 (331)
T ss_dssp             TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred             cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence            99864433211111123334444433322         1   1224567888888 56677665

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.94  E-value=1.5e-09  Score=94.95  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             HHhhhhcCC-CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHh
Q 019694            8 ITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKK   82 (337)
Q Consensus         8 i~k~~l~~~-g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~   82 (337)
                      .++.++... ....|++++|+||||||||++|+++++++   +.+++.++.+++........ ...+...+...    . 
T Consensus        40 ~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-  114 (202)
T 2w58_A           40 FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI----K-  114 (202)
T ss_dssp             HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH----H-
T ss_pred             HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh----c-
Confidence            344454422 22235899999999999999999999987   56777777665432110000 00001112211    2 


Q ss_pred             cCceEEEecccccc
Q 019694           83 GKMCCLMINDLDAG   96 (337)
Q Consensus        83 ~~p~Il~IDEiD~l   96 (337)
                       .+.+|+|||++..
T Consensus       115 -~~~~lilDei~~~  127 (202)
T 2w58_A          115 -KVPVLMLDDLGAE  127 (202)
T ss_dssp             -HSSEEEEEEECCC
T ss_pred             -CCCEEEEcCCCCC
Confidence             3469999999764

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.93  E-value=2.5e-09  Score=102.97  Aligned_cols=157  Identities=9%  Similarity=0.122  Sum_probs=88.7

Q ss_pred             CCcEEEE--EcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC----------------CCCChHHHHHHH
Q 019694           20 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR   72 (337)
Q Consensus        20 ~p~giLL--~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~----------------~~Ge~~~~ir~~   72 (337)
                      .+..++|  +||||+|||++++.+++++         +..++.+++....+.                ..|.+..   .+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~  125 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI  125 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence            4678999  9999999999999999876         456677765321100                0111111   22


Q ss_pred             HHHHHHHHH-hcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCC--CCceEEEEeCC
Q 019694           73 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND  149 (337)
Q Consensus        73 f~~A~~~~~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~--~~V~vI~TTN~  149 (337)
                      +......+. ...|.||+|||+|.+..... ..     ...+ ..|+..+.+        .  ....  .++.+|+|||.
T Consensus       126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-~~-----~~~l-~~l~~~~~~--------~--~~~~~~~~v~lI~~~~~  188 (412)
T 1w5s_A          126 LKALVDNLYVENHYLLVILDEFQSMLSSPR-IA-----AEDL-YTLLRVHEE--------I--PSRDGVNRIGFLLVASD  188 (412)
T ss_dssp             HHHHHHHHHHHTCEEEEEEESTHHHHSCTT-SC-----HHHH-HHHHTHHHH--------S--CCTTSCCBEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCeEEEEEeCHHHHhhccC-cc-----hHHH-HHHHHHHHh--------c--ccCCCCceEEEEEEecc
Confidence            222222222 46799999999998754311 00     1111 122222220        0  0112  67889999987


Q ss_pred             CC---CCc---chhccCCCceEEEeC--CCHHHHHHHHHHhcc----CCCCCH---HHHHHHhc
Q 019694          150 FS---TLY---APLIRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVAD---DDIVKLVD  198 (337)
Q Consensus       150 ~~---~ld---~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~----~~~l~~---~~la~l~~  198 (337)
                      ++   .++   +.+.+  |+...+.+  ++.++..+++...+.    ...++.   ..+.+.+.
T Consensus       189 ~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~  250 (412)
T 1w5s_A          189 VRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG  250 (412)
T ss_dssp             THHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred             ccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence            65   233   55555  33333666  788899999865543    234555   34555566

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.88  E-value=3.7e-09  Score=102.74  Aligned_cols=121  Identities=11%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      .+++.+..++|+||||+|||||+++++..++..++.+....       ..     ..|...    ...+..++|+||++.
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~-----~~~~lg----~~~q~~~~l~dd~~~  227 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR-----LNFELG----VAIDQFLVVFEDVKG  227 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT-----HHHHHG----GGTTCSCEEETTCCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh-----HHHHHH----HhcchhHHHHHHHHH
Confidence            36777889999999999999999999998876655433221       11     011111    223556789999998


Q ss_pred             ccc-cCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCH
Q 019694           96 GAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR  172 (337)
Q Consensus        96 l~~-~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~  172 (337)
                      +.. .++-.......   ....+.+.++                +.+.|+++||+++.+ ++++||||++..++.+..
T Consensus       228 ~~~~~r~l~~~~~~~---~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~  285 (377)
T 1svm_A          228 TGGESRDLPSGQGIN---NLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPK  285 (377)
T ss_dssp             STTTTTTCCCCSHHH---HHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCCH
T ss_pred             HHHHHhhccccCcch---HHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhcH
Confidence            774 22101101000   1112222333                236789999999999 789999999998888553

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.85  E-value=1.3e-09  Score=102.92  Aligned_cols=83  Identities=12%  Similarity=0.182  Sum_probs=49.1

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHh
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKK   82 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~   82 (337)
                      .++.|+....-..+.+++||||||||||+||+++|+++.    .+++.++.+++.....+.. ...+...+..      -
T Consensus       139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~------~  212 (308)
T 2qgz_A          139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA------V  212 (308)
T ss_dssp             HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH------H
T ss_pred             HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH------h
Confidence            445555532222468999999999999999999998654    6777777665433211100 0001111111      1


Q ss_pred             cCceEEEecccccc
Q 019694           83 GKMCCLMINDLDAG   96 (337)
Q Consensus        83 ~~p~Il~IDEiD~l   96 (337)
                      ....+||||||+..
T Consensus       213 ~~~~lLiiDdig~~  226 (308)
T 2qgz_A          213 KNVPVLILDDIGAE  226 (308)
T ss_dssp             HTSSEEEEETCCC-
T ss_pred             cCCCEEEEcCCCCC
Confidence            24569999999653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.85  E-value=2.5e-09  Score=95.49  Aligned_cols=112  Identities=15%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCc
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM   85 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p   85 (337)
                      ++.++.|+.  +++...++|+|||||||||++|.++|+.+.-.++....+.  +    ..      .+.      .-...
T Consensus        45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s----~f------~l~------~l~~~  104 (212)
T 1tue_A           45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--S----HF------WLE------PLTDT  104 (212)
T ss_dssp             HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--S----CG------GGG------GGTTC
T ss_pred             HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--c----hh------hhc------ccCCC
Confidence            455666665  3444578999999999999999999999865432211100  0    00      001      11123


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-CCCCCceEEEEeCCC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF  150 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-~~~~~V~vI~TTN~~  150 (337)
                      .||+|||+|.-            ..+.+...+.+++|.- .+.++-.+.. ......|+|+|||..
T Consensus       105 kIiiLDEad~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~  157 (212)
T 1tue_A          105 KVAMLDDATTT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIH  157 (212)
T ss_dssp             SSEEEEEECHH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSC
T ss_pred             CEEEEECCCch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCC
Confidence            49999999831            1223444556666621 1111111111 122356999999973

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.81  E-value=2.7e-09  Score=90.19  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l   96 (337)
                      ....++|+||+|+|||+|+++++..+   |...+.++..++...               +    ...+|.+|+|||++.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~   95 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL   95 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence            45789999999999999999999987   667788887766543               1    1236889999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.77  E-value=1.8e-08  Score=89.44  Aligned_cols=125  Identities=14%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH--------hC-CCcEEecCCccccCCC-------------CChHHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA-------------GEPAKLIRQRYREAA   77 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~--------l~-~~~i~vs~s~l~~~~~-------------Ge~~~~ir~~f~~A~   77 (337)
                      .+...|++|+||+|||++|...+..        .| .+++..+..+|.....             ++.. ..+..+..+ 
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~-   81 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQL-SAHDMYEWI-   81 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCE-EGGGHHHHT-
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccc-cHHHHHHHh-
Confidence            4568899999999999999886443        34 5666666555533221             1100 001122211 


Q ss_pred             HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           78 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        78 ~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                       ....+..+||+|||++.+...+......   .+    .|.++..             .....+-||++|+.++.|+.++
T Consensus        82 -~~~~~~~~vliIDEAq~l~~~~~~~~e~---~r----ll~~l~~-------------~r~~~~~iil~tq~~~~l~~~l  140 (199)
T 2r2a_A           82 -KKPENIGSIVIVDEAQDVWPARSAGSKI---PE----NVQWLNT-------------HRHQGIDIFVLTQGPKLLDQNL  140 (199)
T ss_dssp             -TSGGGTTCEEEETTGGGTSBCCCTTCCC---CH----HHHGGGG-------------TTTTTCEEEEEESCGGGBCHHH
T ss_pred             -hccccCceEEEEEChhhhccCccccchh---HH----HHHHHHh-------------cCcCCeEEEEECCCHHHHhHHH
Confidence             0124568999999999987544211111   11    2222211             2234567899999999999997


Q ss_pred             ccCCCceEEEeC
Q 019694          158 IRDGRMEKFYWA  169 (337)
Q Consensus       158 lR~gR~d~~i~~  169 (337)
                      .+  |++..+.+
T Consensus       141 r~--ri~~~~~l  150 (199)
T 2r2a_A          141 RT--LVRKHYHI  150 (199)
T ss_dssp             HT--TEEEEEEE
T ss_pred             HH--HhheEEEE
Confidence            64  99999888

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.74  E-value=2.6e-08  Score=102.25  Aligned_cols=26  Identities=19%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ..++|+||||||||++|+++|..+..
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            57999999999999999999998754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.60  E-value=4e-08  Score=111.61  Aligned_cols=103  Identities=17%  Similarity=0.263  Sum_probs=66.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc----cCCCC------------ChHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAG------------EPAKLIRQRYREA   76 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~----~~~~G------------e~~~~ir~~f~~A   76 (337)
                      .|++.+++++|+||||||||+||.+++.+.   |.....++..+..    ....|            ..+..++.++..+
T Consensus      1422 GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A         1422 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp             SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence            468899999999999999999999997765   4455555554321    11112            3344555455444


Q ss_pred             HHHHHhcCceEEEecccccccccC---C--CCcccchhhHhHHHHHHhhhC
Q 019694           77 ADIIKKGKMCCLMINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD  122 (337)
Q Consensus        77 ~~~~~~~~p~Il~IDEiD~l~~~~---~--~~~~~~~~~~~v~~~Ll~lld  122 (337)
                          +..+|++|||||++.+.+..   +  +.+..+...+.+.+.|.++..
T Consensus      1502 ----r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A         1502 ----RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp             ----HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             ----hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence                88999999999999888642   1  111222234455555555544

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.60  E-value=2.9e-07  Score=86.14  Aligned_cols=157  Identities=20%  Similarity=0.245  Sum_probs=86.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc------------c---CCCCC---------------------h
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P   65 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~------------~---~~~Ge---------------------~   65 (337)
                      ..++|+||+|+|||+|++.++++.+  ++.+++....            .   ...+.                     .
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  109 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR  109 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence            5899999999999999999999886  4444432211            0   00000                     0


Q ss_pred             HHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEE
Q 019694           66 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV  145 (337)
Q Consensus        66 ~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~  145 (337)
                      ...+.+++....+.+....|.+|+|||++.+.....  .    ....+...|..+++              ...++.+|+
T Consensus       110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~--------------~~~~~~~il  169 (350)
T 2qen_A          110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD--------------SLPNLKIIL  169 (350)
T ss_dssp             GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH--------------HCTTEEEEE
T ss_pred             cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH--------------hcCCeEEEE
Confidence            011233333332233333499999999998753100  0    01112223333333              013667788


Q ss_pred             EeCCCC---------CCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCH---HHHHHHhcCCCc
Q 019694          146 TGNDFS---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VAD---DDIVKLVDTFPG  202 (337)
Q Consensus       146 TTN~~~---------~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~---~~la~l~~gf~g  202 (337)
                      |+....         ....++  .||....+.+  .+.++-.+++...+...+  ++.   ..+...+.|++.
T Consensus       170 ~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~  240 (350)
T 2qen_A          170 TGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG  240 (350)
T ss_dssp             EESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred             ECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence            776432         112223  2466666777  688888888887765443  444   345566777664

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.59  E-value=2e-07  Score=108.91  Aligned_cols=141  Identities=9%  Similarity=0.053  Sum_probs=91.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      .-+|+++.||||||||++++++|+.+|.+++.+++++-.+      ...+...|..+    . ...+.++|||++.+-..
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~----~-~~Gaw~~~DE~nr~~~e  712 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI----T-QIGAWGCFDEFNRLDEK  712 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH----H-HHTCEEEEETTTSSCHH
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH----H-hcCCEeeehhhhhcChH
Confidence            4578999999999999999999999999999999986433      34445566655    2 22479999999875321


Q ss_pred             CCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC--CCHH
Q 019694          100 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTRE  173 (337)
Q Consensus       100 ~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~--P~~~  173 (337)
                           --.+..+.+...+-.+.+....+...|.. ....+...|++|.|    ....||++|.+  ||- .+.+  |+.+
T Consensus       713 -----vLs~l~~~l~~i~~al~~~~~~i~~~g~~-i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr-~v~m~~Pd~~  783 (2695)
T 4akg_A          713 -----VLSAVSANIQQIQNGLQVGKSHITLLEEE-TPLSPHTAVFITLNPGYNGRSELPENLKK--SFR-EFSMKSPQSG  783 (2695)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHTCSEEECSSSE-EECCTTCEEEEEECCCSSSSCCCCHHHHT--TEE-EEECCCCCHH
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCcEEeeCCcE-EecCCCceEEEEeCCCccCcccccHHHHh--heE-EEEeeCCCHH
Confidence                 11112222222222222323233333321 12345667889999    66789999987  553 4555  9999


Q ss_pred             HHHHHHH
Q 019694          174 DRIGVCK  180 (337)
Q Consensus       174 ~R~~Il~  180 (337)
                      ...+|+.
T Consensus       784 ~i~ei~l  790 (2695)
T 4akg_A          784 TIAEMIL  790 (2695)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888853

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.55  E-value=9.5e-07  Score=82.64  Aligned_cols=153  Identities=17%  Similarity=0.203  Sum_probs=87.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-----c---------------------------CCCC------
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-----S---------------------------GNAG------   63 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-----~---------------------------~~~G------   63 (337)
                      ..++|+||+|+|||+|++.++++++..++.+++....     +                           ...|      
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  110 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN  110 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence            4899999999999999999999987777777655321     0                           0000      


Q ss_pred             -----C---hHHHHHHHHHHHHHHHHhc--CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc
Q 019694           64 -----E---PAKLIRQRYREAADIIKKG--KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY  133 (337)
Q Consensus        64 -----e---~~~~ir~~f~~A~~~~~~~--~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~  133 (337)
                           .   ....+..++...    ...  .|.+|+|||++.+....+    ..     +...|..+.+           
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~vlvlDe~~~~~~~~~----~~-----~~~~l~~~~~-----------  166 (357)
T 2fna_A          111 EIKFNWNRKDRLSFANLLESF----EQASKDNVIIVLDEAQELVKLRG----VN-----LLPALAYAYD-----------  166 (357)
T ss_dssp             SEEEC-----CCCHHHHHHHH----HHTCSSCEEEEEETGGGGGGCTT----CC-----CHHHHHHHHH-----------
T ss_pred             EEEeccCCcchhhHHHHHHHH----HhcCCCCeEEEEECHHHhhccCc----hh-----HHHHHHHHHH-----------
Confidence                 0   001122222222    221  499999999998754211    00     1122222222           


Q ss_pred             ccCCCCCceEEEEeCCCCCC---------cchhccCCCceEEEeC--CCHHHHHHHHHHhccCC--CC-CHHHHHHHhcC
Q 019694          134 NKEENPRVPIIVTGNDFSTL---------YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND--NV-ADDDIVKLVDT  199 (337)
Q Consensus       134 ~~~~~~~V~vI~TTN~~~~l---------d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~--~l-~~~~la~l~~g  199 (337)
                         ...++.+|+|++....+         ..++  .||+...+.+  .+.++..+++...+...  .. ....+...+.|
T Consensus       167 ---~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G  241 (357)
T 2fna_A          167 ---NLKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGG  241 (357)
T ss_dssp             ---HCTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCS
T ss_pred             ---cCCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCC
Confidence               01356788888753211         1222  3466556666  78888888887765321  22 23677788888


Q ss_pred             CCch
Q 019694          200 FPGQ  203 (337)
Q Consensus       200 f~ga  203 (337)
                      ++..
T Consensus       242 ~P~~  245 (357)
T 2fna_A          242 IPGW  245 (357)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            8764

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.51  E-value=3.3e-07  Score=88.98  Aligned_cols=129  Identities=17%  Similarity=0.208  Sum_probs=76.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcccc-------------CCCCChHHHHHHHHHHHHHHHHhcC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES-------------GNAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~-------------~~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      ...|||+|++|||||++|+++.....   .+|+.++++.+-.             .+.|.... -...|..|       .
T Consensus       160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~  231 (387)
T 1ny5_A          160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------D  231 (387)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------T
T ss_pred             CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------C
Confidence            34479999999999999999988764   5899999886522             11121100 11344444       5


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME  164 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d  164 (337)
                      ..+||||||+.+..             .++..|+.+++..+...+++.  .....++.||+|||..-   ..+.+.|+|.
T Consensus       232 ~gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~l---~~~~~~g~fr  293 (387)
T 1ny5_A          232 GGTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRNI---KELVKEGKFR  293 (387)
T ss_dssp             TSEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSCH---HHHHHTTSSC
T ss_pred             CcEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCCH---HHHHHcCCcc
Confidence            67999999987632             233445555553222222222  12235678999999631   1233444442


Q ss_pred             ---------EEEeCCCHHHH
Q 019694          165 ---------KFYWAPTREDR  175 (337)
Q Consensus       165 ---------~~i~~P~~~~R  175 (337)
                               ..+.+|...+|
T Consensus       294 ~dl~~rl~~~~i~lPpLreR  313 (387)
T 1ny5_A          294 EDLYYRLGVIEIEIPPLRER  313 (387)
T ss_dssp             HHHHHHHTTEEEECCCGGGC
T ss_pred             HHHHHhhcCCeecCCcchhc
Confidence                     34566776554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.45  E-value=8.8e-08  Score=112.60  Aligned_cols=141  Identities=11%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHH------------hcCceE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCC   87 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~------------~~~p~I   87 (337)
                      .+.|||+||||||||+++......+ +.+++.++.+.-      .+...+...++.-.+..+            .++..|
T Consensus      1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~------Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A         1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSA------TTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp             TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTT------CCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCC------CCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence            3569999999999998876654444 556667776632      223444444432100000            144579


Q ss_pred             EEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcccc-----CCCCCceEEEEeCCC-----CCCcchh
Q 019694           88 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPL  157 (337)
Q Consensus        88 l~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~-----~~~~~V~vI~TTN~~-----~~ld~aL  157 (337)
                      +|||||+.-.....       ..|....+|..++|.-      |.|..     ....++.+|+|+|.+     ..|+++|
T Consensus      1378 lFiDDiNmp~~D~y-------GtQ~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A         1378 VFCDEINLPSTDKY-------GTQRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp             EEETTTTCCCCCTT-------SCCHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred             EEecccCCCCcccc-------ccccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence            99999985322221       1223445566666632      23322     123678899999977     4699999


Q ss_pred             ccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          158 IRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       158 lR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                      +|  ||-. +.+  |+.++...|+..++
T Consensus      1445 ~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A         1445 LR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp             HT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred             Hh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence            98  6666 444  99999999965543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.41  E-value=1.1e-06  Score=81.18  Aligned_cols=41  Identities=10%  Similarity=0.112  Sum_probs=30.3

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ...+++|++.. .++..+|+||||||||||++|++||+.++.
T Consensus        90 ~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A           90 ASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             HHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            33455555531 133468999999999999999999998765

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.25  E-value=2.7e-07  Score=91.69  Aligned_cols=123  Identities=17%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             EEEEEcCCCchHHHHHHHH-HHHhCCCcEEe-cCCc-------cccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           23 ILGIWGGKGQGKSFQCELV-FAKMGINPIMM-SAGE-------LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~ai-A~~l~~~~i~v-s~s~-------l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      .|||.|+||| ||++|+++ ++-+....+.. .++.       +.+. .| . ..-...+..|       ...++|||||
T Consensus       241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~-tG-~-~~~~G~l~LA-------dgGvl~lDEI  309 (506)
T 3f8t_A          241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED-RG-W-ALRAGAAVLA-------DGGILAVDHL  309 (506)
T ss_dssp             CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES-SS-E-EEEECHHHHT-------TTSEEEEECC
T ss_pred             eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC-CC-c-ccCCCeeEEc-------CCCeeehHhh
Confidence            6999999999 99999999 66543322221 0000       1111 01 0 0000122233       4579999999


Q ss_pred             ccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC-----------CCcchhccCCC
Q 019694           94 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIRDGR  162 (337)
Q Consensus        94 D~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~-----------~ld~aLlR~gR  162 (337)
                      +.+-.             .....|++.+...+ +.+.|.   ....+..||+|+|...           .|+++++-  |
T Consensus       310 n~~~~-------------~~qsaLlEaMEe~~-VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--R  370 (506)
T 3f8t_A          310 EGAPE-------------PHRWALMEAMDKGT-VTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--H  370 (506)
T ss_dssp             TTCCH-------------HHHHHHHHHHHHSE-EEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--T
T ss_pred             hhCCH-------------HHHHHHHHHHhCCc-EEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--h
Confidence            87532             22345555555332 334443   4456789999999765           78899996  9


Q ss_pred             ceEEEeC---CCHHHH
Q 019694          163 MEKFYWA---PTREDR  175 (337)
Q Consensus       163 ~d~~i~~---P~~~~R  175 (337)
                      ||.++.+   |+.+.-
T Consensus       371 FDLi~i~~d~pd~e~d  386 (506)
T 3f8t_A          371 FDLIAFLGVDPRPGEP  386 (506)
T ss_dssp             CSEEEETTC-------
T ss_pred             eeeEEEecCCCChhHh
Confidence            9998877   666553

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.25  E-value=3.9e-06  Score=73.47  Aligned_cols=41  Identities=10%  Similarity=0.054  Sum_probs=33.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      .|++....++|+||||+|||+|++.++...+...+.++...
T Consensus        15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            36777888999999999999999999886666777776543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.25  E-value=1.6e-06  Score=83.58  Aligned_cols=128  Identities=17%  Similarity=0.275  Sum_probs=75.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCC--cEEecCCccccCC-------------CCChHHHHHHHHHHHHHHHHhcCce
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~--~i~vs~s~l~~~~-------------~Ge~~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ..+|++|++||||+++|+++....+..  |+.++++.+-...             .|.... -...|..|       ...
T Consensus       153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a-------~~g  224 (368)
T 3dzd_A          153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELA-------DQG  224 (368)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHT-------TTS
T ss_pred             hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhc-------CCC
Confidence            349999999999999999998877543  9999998753221             111000 01234444       456


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceE-
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-  165 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~-  165 (337)
                      .||||||+.+..             .++..|+.+++..+...+.+.  .....++-+|+|||..  + ..+...|+|.. 
T Consensus       225 tlfldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~d  286 (368)
T 3dzd_A          225 TLFLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFRED  286 (368)
T ss_dssp             EEEEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHH
T ss_pred             eEEecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHH
Confidence            899999987632             234455555553222222221  1123467899999952  2 22344555542 


Q ss_pred             --------EEeCCCHHHH
Q 019694          166 --------FYWAPTREDR  175 (337)
Q Consensus       166 --------~i~~P~~~~R  175 (337)
                              .+.+|...+|
T Consensus       287 L~~rl~~~~i~lPpLreR  304 (368)
T 3dzd_A          287 LYYRLSVFQIYLPPLRER  304 (368)
T ss_dssp             HHHHHTSEEEECCCGGGS
T ss_pred             HHHHhCCeEEeCCChhhc
Confidence                    4666766655

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.18  E-value=2.2e-06  Score=72.93  Aligned_cols=34  Identities=15%  Similarity=0.106  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      |+.|+|.|+||+||||+++++++.++.+++.++.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~   36 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence            5679999999999999999999999988887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.10  E-value=2.1e-05  Score=68.04  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      -+.|.||+|+|||||++.++..+++.+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            478999999999999999999887543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.06  E-value=1.1e-05  Score=77.69  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CCC--------hHHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGE--------PAKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~Ge--------~~~~ir~~f~~A~~~~   80 (337)
                      .|+++...++|+||||+|||+|+..++..+   +..++.++........    .|-        ....+.+....+..++
T Consensus        56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~  135 (356)
T 3hr8_A           56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV  135 (356)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence            367777889999999999999999998764   5566666665422100    000        0011234444454555


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+.+++||.+-.+.+
T Consensus       136 ~~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          136 RSGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             HTSCCSEEEEECTTTCCC
T ss_pred             hhcCCCeEEehHhhhhcC
Confidence            678899999999988764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.06  E-value=2.2e-05  Score=92.80  Aligned_cols=141  Identities=17%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccccC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM  100 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~  100 (337)
                      -.|..+.||+|||||.+++.+|+.+|.+++.+++++-.      ..+.+...|.-+   +.  ..+..+|||++.+-.. 
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~---~~--~GaW~cfDEfNrl~~~-  671 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGL---CQ--CGAWGCFDEFNRLEER-  671 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHH---HH--HTCEEEEETTTSSCHH-
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhH---hh--cCcEEEehhhhcCCHH-
Confidence            35678999999999999999999999999999998533      233444555544   22  3457889999875311 


Q ss_pred             CCCcccchhhHhHHHHHHhhhCCCccccCC-CccccCCCCCceEEEEeC----CCCCCcchhccCCCceEEEeC-CCHHH
Q 019694          101 GGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA-PTRED  174 (337)
Q Consensus       101 ~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~-g~~~~~~~~~V~vI~TTN----~~~~ld~aLlR~gR~d~~i~~-P~~~~  174 (337)
                          --.+..+.+......+.+....+.+. |. .-.-.+...|++|.|    ....||++|..  ||--+... |+.+.
T Consensus       672 ----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~-~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~  744 (3245)
T 3vkg_A          672 ----ILSAVSQQIQTIQVALKENSKEVELLGGK-NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREM  744 (3245)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHcCCCeEEecCCC-EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHH
Confidence                11222222222222233434444444 32 112345678999999    45789999987  44333323 99999


Q ss_pred             HHHHHH
Q 019694          175 RIGVCK  180 (337)
Q Consensus       175 R~~Il~  180 (337)
                      ..+|+-
T Consensus       745 i~ei~L  750 (3245)
T 3vkg_A          745 IAQVML  750 (3245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888853

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.06  E-value=6e-06  Score=94.13  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK   81 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~G--------e~~~~ir~~f~~A~~~~~   81 (337)
                      |+.+...++|+|+||+|||+||..+|..+   +.+++.++..+.....    .|        .++..+.+++..+..+.+
T Consensus       728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~  807 (2050)
T 3cmu_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  807 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence            78889999999999999999999998876   3458888876544332    22        122335677777766666


Q ss_pred             hcCceEEEecccccccc
Q 019694           82 KGKMCCLMINDLDAGAG   98 (337)
Q Consensus        82 ~~~p~Il~IDEiD~l~~   98 (337)
                      ...|++|+||.|..+..
T Consensus       808 ~~~~~LVIIDsLq~i~~  824 (2050)
T 3cmu_A          808 SGAVDVIVVDSVAALTP  824 (2050)
T ss_dssp             HTCCSEEEESCGGGCCC
T ss_pred             ccCCCEEEEcchhhhcc
Confidence            78999999999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.02  E-value=1.6e-05  Score=72.26  Aligned_cols=52  Identities=13%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             HHHHhhhhc-CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694            6 VHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus         6 ~~i~k~~l~-~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      ..+.+.++. ......|..|+|.|+||+||||+++.++..++..++.+++..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~   68 (253)
T 2p5t_B           16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF   68 (253)
T ss_dssp             HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred             HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence            334444443 2345678899999999999999999999999877777777665

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.01  E-value=3.5e-06  Score=80.82  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~f~~A~~~~   80 (337)
                      .|++....++|+||||+|||+||..++...   +...+.++...-.+.    ..|-.        ...+.+.+..+..++
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~  135 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV  135 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            367777889999999999999999987654   556666665432111    01100        001233444454455


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...|.+|+||++..+..
T Consensus       136 ~~~~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          136 RSGALDIIVIDSVAALVP  153 (349)
T ss_dssp             TTTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEcChHhhcc
Confidence            677899999999998874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.99  E-value=2.3e-05  Score=75.60  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=55.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~----~Ge~--------~~~ir~~f~~A~~~~   80 (337)
                      .|++....++|+||||+|||+||..+|..+   +..++.++...-.+..    .|..        ...+.+++..+..++
T Consensus        69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~  148 (366)
T 1xp8_A           69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  148 (366)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence            367778889999999999999999887764   5566666654321110    1100        001233444444455


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+.+|+||.+..+..
T Consensus       149 ~~~~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          149 RSGAIDVVVVDSVAALTP  166 (366)
T ss_dssp             TTTCCSEEEEECTTTCCC
T ss_pred             hcCCCCEEEEeChHHhcc
Confidence            677899999999998874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.95  E-value=7.4e-06  Score=76.29  Aligned_cols=56  Identities=14%  Similarity=0.212  Sum_probs=42.5

Q ss_pred             hhHHHHHhhhhcC-CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694            3 KLVVHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus         3 k~~~~i~k~~l~~-~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      +++..++..++.. .....|..|+|.||||+||||+++.++++++..++.++...+.
T Consensus        14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R   70 (287)
T 1gvn_B           14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   70 (287)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence            4556666666652 3345688999999999999999999999986567778765444

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.91  E-value=6.6e-06  Score=70.43  Aligned_cols=34  Identities=12%  Similarity=-0.142  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .++.|+|.||||+|||++++.+|+.++++++..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            3568999999999999999999999999887553

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.91  E-value=8.6e-06  Score=69.89  Aligned_cols=35  Identities=11%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      |.+.|+.|+|.|+||+||||+++.+++.++..++.
T Consensus         1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~   35 (193)
T 2rhm_A            1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS   35 (193)
T ss_dssp             CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence            35668899999999999999999999999987665

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.90  E-value=1.4e-05  Score=90.06  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=59.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcccc----CCCCC--------hHHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~----~~~Ge--------~~~~ir~~f~~A~~~~   80 (337)
                      .|+.+...++|+||||+|||+||..+|..+   +.+++.++..+...    ...|-        .+..+.+++..+..++
T Consensus       727 GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv  806 (1706)
T 3cmw_A          727 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  806 (1706)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHH
Confidence            368889999999999999999999997764   44677776654321    11120        1113456666666666


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...|.+|+||.+..+..
T Consensus       807 ~~~~~~lVVIDsLq~l~~  824 (1706)
T 3cmw_A          807 RSGAVDVIVVDSVAALTP  824 (1706)
T ss_dssp             HHTCCSEEEESCSTTCCC
T ss_pred             HccCCCEEEEechhhhcc
Confidence            778999999999998874

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.90  E-value=1.2e-05  Score=77.26  Aligned_cols=83  Identities=16%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCChH--------HHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge~~--------~~ir~~f~~A~~~~   80 (337)
                      .|++....++|+||||+|||+||..+|..+   +..++.++...-.+.    ..|...        ....++...+..++
T Consensus        58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~  137 (356)
T 1u94_A           58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  137 (356)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence            367777889999999999999999987754   566777776432110    001000        01223333343445


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+.+|+||.+..+..
T Consensus       138 ~~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          138 RSGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HHTCCSEEEEECGGGCCC
T ss_pred             hccCCCEEEEcCHHHhcc
Confidence            577899999999998874

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.86  E-value=8.3e-05  Score=65.11  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      .|++....++|+||||+|||+|++.++..+   +..++.++
T Consensus        18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            367777889999999999999999998653   44444443

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.86  E-value=2.6e-05  Score=73.60  Aligned_cols=82  Identities=10%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCcccc--------CCCCC--------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE--------------   64 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~--------~~~Ge--------------   64 (337)
                      .|++....++|+||||+|||+||..+|...         +...+.++...-.+        ...|-              
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~  181 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA  181 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence            467777889999999999999999998875         44566666554210        00111              


Q ss_pred             -hHHHHHHHHHHHHHHHHh-cCceEEEeccccccc
Q 019694           65 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGA   97 (337)
Q Consensus        65 -~~~~ir~~f~~A~~~~~~-~~p~Il~IDEiD~l~   97 (337)
                       ....+.+++..+..+++. ..+.+|+||.+..+.
T Consensus       182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~  216 (324)
T 2z43_A          182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF  216 (324)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence             011112344455555666 789999999998876

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.85  E-value=3.4e-05  Score=68.41  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH--h-------CCCcEEecCCccccC--------CCCC--------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELESG--------NAGE--------------   64 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~--l-------~~~~i~vs~s~l~~~--------~~Ge--------------   64 (337)
                      .|++....++|+||||+|||+|++.++..  +       +...+.++.......        ..|-              
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   98 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA   98 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence            46777788999999999999999999985  2       345566665441000        0110              


Q ss_pred             -hHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           65 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        65 -~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                       ....+...+..+.+.+....|.+|+|||+-.+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~  133 (243)
T 1n0w_A           99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR  133 (243)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred             CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence             1111122333344455677899999999987663

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=1.3e-05  Score=69.88  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      +.+.+.|+|.||||+||||+++.+|+.++..++..+
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            345668999999999999999999999999877543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.79  E-value=1.4e-05  Score=68.25  Aligned_cols=35  Identities=20%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ...++.|+|+|+||+|||++++.+++.++..++..
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~   42 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV   42 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence            34456799999999999999999999999877654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.79  E-value=4.8e-05  Score=69.43  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE   58 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~   58 (337)
                      .+..|+|.|+||+||||+|+.+++.   .|..++.++...+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~   44 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR   44 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence            3567999999999999999999998   78887766665543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.78  E-value=4.4e-05  Score=72.71  Aligned_cols=83  Identities=14%  Similarity=0.069  Sum_probs=53.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---------CCCcEEecCCccccC--------CCCCh-------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGEP-------------   65 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---------~~~~i~vs~s~l~~~--------~~Ge~-------------   65 (337)
                      .|++....++|+||||+|||+||..+|...         +...+.++...-.+.        ..|-.             
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~  196 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA  196 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence            367777889999999999999999998863         445666665442110        00100             


Q ss_pred             --HHHHHHHHHHHHHHHHh--cCceEEEecccccccc
Q 019694           66 --AKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG   98 (337)
Q Consensus        66 --~~~ir~~f~~A~~~~~~--~~p~Il~IDEiD~l~~   98 (337)
                        ...+.++...+..+++.  ..+.+|+||.+..+..
T Consensus       197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~  233 (343)
T 1v5w_A          197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR  233 (343)
T ss_dssp             CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence              01111333344455566  7899999999988763

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.75  E-value=3.2e-05  Score=73.32  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=51.0

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCccccC----CCCCh--------HHHHHHH-HHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----NAGEP--------AKLIRQR-YREAA   77 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~l~~~----~~Ge~--------~~~ir~~-f~~A~   77 (337)
                      .|++.. .++|+||||+|||+|+-.++.++     +..++.++..+-...    ..|-.        +....++ +..+.
T Consensus        24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~  102 (333)
T 3io5_A           24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN  102 (333)
T ss_dssp             CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred             CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence            456554 67999999999999988775543     556677766532110    01110        0112233 33332


Q ss_pred             HH--HHhcCceEEEeccccccccc
Q 019694           78 DI--IKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        78 ~~--~~~~~p~Il~IDEiD~l~~~   99 (337)
                      .+  ++...|.+|+||=|-++..+
T Consensus       103 ~l~~i~~~~~~lvVIDSI~aL~~~  126 (333)
T 3io5_A          103 QLDAIERGEKVVVFIDSLGNLASK  126 (333)
T ss_dssp             HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred             HHHHhhccCceEEEEecccccccc
Confidence            23  46788999999999988743

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.74  E-value=2.3e-05  Score=68.23  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=30.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -..|..|+|.|+||+||||+|+.+++.++.+++.+
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            34567899999999999999999999999886654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.73  E-value=2e-05  Score=70.65  Aligned_cols=41  Identities=32%  Similarity=0.567  Sum_probs=33.2

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      ....+.|+.|+|.||||+||+|+|+.+++++|++  .++.+++
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdl   63 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDL   63 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHH
Confidence            3456788999999999999999999999999865  4455444

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.73  E-value=6.9e-05  Score=71.66  Aligned_cols=82  Identities=18%  Similarity=0.183  Sum_probs=53.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcccc--------CCCCC--------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE--------------   64 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~--------~~~Ge--------------   64 (337)
                      .|++....++|+||||+|||+|++.++....         -..+.++..+...        ...+-              
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~  205 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA  205 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence            4677778899999999999999999998762         2446665543210        00000              


Q ss_pred             -hHHHHHHHHHHHHHHHHh-----cCceEEEeccccccc
Q 019694           65 -PAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA   97 (337)
Q Consensus        65 -~~~~ir~~f~~A~~~~~~-----~~p~Il~IDEiD~l~   97 (337)
                       ......+++..+..++..     ..|.+|+|||+-++.
T Consensus       206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l  244 (349)
T 1pzn_A          206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF  244 (349)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred             CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence             011223445555555666     689999999997765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.72  E-value=1.9e-05  Score=67.53  Aligned_cols=31  Identities=35%  Similarity=0.705  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      |+.|+|.|+||+||||+|+.+++.++++++.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   33 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            6789999999999999999999999976654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.72  E-value=1.7e-05  Score=67.78  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      ..|+|.|+||+|||++|+.+++.+|++++..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            34899999999999999999999998876543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.70  E-value=2.8e-05  Score=65.24  Aligned_cols=32  Identities=16%  Similarity=-0.071  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      ..|+|.||||+||||+++.+++.++++++..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            35889999999999999999999998876443

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.69  E-value=0.00025  Score=66.86  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=86.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CC-CcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~-~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      +.+...|||||+|.||++.++.+++.+   +. ++..+..    +   ++  ..++++...+...---+...|++|||++
T Consensus        16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~   86 (343)
T 1jr3_D           16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI----D---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE   86 (343)
T ss_dssp             CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC----C---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe----c---CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence            467789999999999999999998865   32 2222211    1   11  2235555555222224567899999998


Q ss_pred             c-ccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC------CCCcchhccCCCceEEE
Q 019694           95 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY  167 (337)
Q Consensus        95 ~-l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~------~~ld~aLlR~gR~d~~i  167 (337)
                      . +...             ....|+..+.             .+.+.+++|.+|+.+      ..+.+++..++  -. +
T Consensus        87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~-~  137 (343)
T 1jr3_D           87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALANRS--VQ-V  137 (343)
T ss_dssp             SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EE-E
T ss_pred             CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eE-E
Confidence            6 4210             1123334444             233455666666653      35677776533  32 3


Q ss_pred             eC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhcCCCc
Q 019694          168 WA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG  202 (337)
Q Consensus       168 ~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~gf~g  202 (337)
                      .+  |+.++...+++..+...+  ++.+.+..+++...|
T Consensus       138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g  176 (343)
T 1jr3_D          138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG  176 (343)
T ss_dssp             EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred             EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence            33  778888888888876665  455555555554443

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.67  E-value=2.8e-05  Score=66.32  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|+.|+|.|+||+||||+++.+++.++..++..
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            3467899999999999999999999999766544

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.67  E-value=2.5e-05  Score=67.09  Aligned_cols=33  Identities=33%  Similarity=0.533  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .++.|+|.|+||+||||+++.+++.++.+++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   40 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST   40 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            456899999999999999999999999876644

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.65  E-value=3e-05  Score=65.38  Aligned_cols=32  Identities=19%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -..|+|.|+|||||||+++.+|+++|++++..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~   38 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT   38 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            35789999999999999999999999988754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.65  E-value=2.9e-05  Score=68.61  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .+..|+|.|+||+||||+++.+|+.+++.++..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            467799999999999999999999999866544

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.65  E-value=2.7e-05  Score=67.05  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH-hCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK-MGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~-l~~~~i~v   52 (337)
                      +..|+|+|+||+|||++++.+++. +|++++.+
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~   42 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence            456999999999999999999999 78776644

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.65  E-value=2.6e-05  Score=66.89  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      +++.+..+.|.||||+||||+++.++...+...+.+++.+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~   44 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD   44 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence            3556778999999999999999999998777777776554

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.64  E-value=2.4e-05  Score=66.11  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH-HhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA-KMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~-~l~~~   48 (337)
                      |+.|+|.|+||+||||+|+.+++ .++..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~   30 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFY   30 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence            67899999999999999999998 45543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.64  E-value=0.00012  Score=71.36  Aligned_cols=83  Identities=13%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCcccc--------CCCCCh-------------
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGEP-------------   65 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~~--------~~~Ge~-------------   65 (337)
                      .|++.-..++|+||||+|||+|++.++...-         ...+.++..+...        ..+|-.             
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~  252 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA  252 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence            4777788899999999999999997764432         2356666543211        001110             


Q ss_pred             --HHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           66 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        66 --~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                        ..........+...+....|.+|+||++-.+..
T Consensus       253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~  287 (400)
T 3lda_A          253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR  287 (400)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred             CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence              111223444455556677899999999977653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.64  E-value=3e-05  Score=65.46  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=26.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      +..|.|.||||+||||+++.+|..++..++
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i   33 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY   33 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456899999999999999999999997554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.63  E-value=2.6e-05  Score=66.28  Aligned_cols=29  Identities=17%  Similarity=0.114  Sum_probs=26.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      .|+|.||||+||||+++.+|+.++++++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d   34 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLD   34 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence            48899999999999999999999987764

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.63  E-value=0.00072  Score=68.18  Aligned_cols=24  Identities=29%  Similarity=0.253  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .++.|+|+||+|+|||+||+.+++
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            467899999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.62  E-value=2.8e-05  Score=69.11  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=28.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|..|+|.|+||+||||+++.+|+.++..++..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            4567899999999999999999999998766543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.62  E-value=2.6e-05  Score=66.32  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |..|+|.|+||+||||+++.+++.++.+++
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            567999999999999999999999998866

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.61  E-value=3.2e-05  Score=64.50  Aligned_cols=30  Identities=33%  Similarity=0.401  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|+|.||||+||||+++.+ +.+|.+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            36889999999999999999 8899887654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.61  E-value=3.1e-05  Score=66.63  Aligned_cols=33  Identities=36%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|+.|+|.|+||+||||+|+.+++.++..++..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   43 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST   43 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            356899999999999999999999999765543

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.60  E-value=4.1e-05  Score=66.62  Aligned_cols=32  Identities=28%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      .|+.|+|.|+||+||||+++.+++.+|..++.
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~   48 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE   48 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence            36689999999999999999999999877654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.59  E-value=4.1e-05  Score=66.47  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|+.|+|.|+||+||||+++.+++.+|..++..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            3467799999999999999999999998766554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.58  E-value=0.00016  Score=63.44  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|++....+.|.||+|+|||+|++.++...
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467777889999999999999999999854

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.58  E-value=0.00017  Score=64.00  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~----l~~~~i~vs~s   55 (337)
                      .|+++...++|+|+||+|||++|..+|.+    .+.+++.++..
T Consensus        25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            37788888999999999999999876543    35666665543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.57  E-value=4.2e-05  Score=69.12  Aligned_cols=34  Identities=18%  Similarity=0.003  Sum_probs=29.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +.|.-|+|.||||+||||+|+.+++++++..+.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            4678899999999999999999999998766544

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.57  E-value=3.6e-05  Score=64.79  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=27.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +.|+|.|+||+|||++++.+++.++++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            4589999999999999999999999876643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.57  E-value=3.2e-05  Score=65.96  Aligned_cols=26  Identities=15%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++.|+|.|+||+||||+++.+++.++
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999987

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.57  E-value=3.9e-05  Score=65.48  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      +..|+|.|+||+||||+++.+++.++++++.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~   34 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS   34 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            4568999999999999999999999876543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.57  E-value=5.6e-05  Score=68.06  Aligned_cols=43  Identities=19%  Similarity=0.280  Sum_probs=28.2

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      +.+.|....+. .|..+.|.||||+||||+++.+++.+|...+.
T Consensus        15 ~~~~~~~~~~~-~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~   57 (246)
T 2bbw_A           15 TENLYFQSMAS-KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS   57 (246)
T ss_dssp             ------------CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred             HHHHHHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            45556665544 37889999999999999999999999876543

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.54  E-value=0.00011  Score=68.80  Aligned_cols=29  Identities=14%  Similarity=0.100  Sum_probs=25.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|++....++|+||||+|||+||..+|..
T Consensus        93 GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            46777788999999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.54  E-value=5.7e-05  Score=68.80  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      +.++|.||||+|||++|+.+|++++..++..+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            358899999999999999999999988776654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.53  E-value=0.0024  Score=64.24  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ..++.|.|+|++|+|||+||+.+++
T Consensus       150 ~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          150 LDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999999999997

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.52  E-value=5.8e-05  Score=67.47  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .+..|+|.|+||+||||+++.+|+++++.++..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            356799999999999999999999999776554

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.52  E-value=5.1e-05  Score=66.64  Aligned_cols=30  Identities=37%  Similarity=0.386  Sum_probs=26.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -|+|.||||+||||+|+.++++++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            378999999999999999999998876655

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.51  E-value=3.2e-05  Score=74.28  Aligned_cols=50  Identities=16%  Similarity=0.075  Sum_probs=35.8

Q ss_pred             chhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694            2 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus         2 ~k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ++++..+++.+-....-.....|+|+||||+|||++++++|..++.+|+.
T Consensus         5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~   54 (359)
T 2ga8_A            5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT   54 (359)
T ss_dssp             HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            45666666665332111122468899999999999999999999988854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.51  E-value=5.5e-05  Score=66.31  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=26.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -|+|.||||+||||+|+.++++++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            378999999999999999999999876654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.50  E-value=4.7e-05  Score=67.31  Aligned_cols=32  Identities=28%  Similarity=0.475  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +..|+|.|+||+||||+++.+|+.++++++..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            35688999999999999999999999876654

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.48  E-value=0.00022  Score=62.93  Aligned_cols=119  Identities=13%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH---hCCCcEEe---cCC------ccccCC-----------CCCh------HHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SAG------ELESGN-----------AGEP------AKLIRQRY   73 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~---l~~~~i~v---s~s------~l~~~~-----------~Ge~------~~~ir~~f   73 (337)
                      -|++|+++|.|||+.|-.+|-.   .|..+..+   ++.      .+....           .-..      ....+..+
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l  109 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW  109 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence            4779999999999999988665   47777666   321      122211           1111      23456677


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      ..+.+.+......+|++||+--...- +     -.....+.++|    .             ....++-||+|+|.+   
T Consensus       110 ~~a~~~l~~~~yDlvILDEi~~al~~-g-----~l~~~ev~~~l----~-------------~Rp~~~~vIlTGr~a---  163 (196)
T 1g5t_A          110 QHGKRMLADPLLDMVVLDELTYMVAY-D-----YLPLEEVISAL----N-------------ARPGHQTVIITGRGC---  163 (196)
T ss_dssp             HHHHHHTTCTTCSEEEEETHHHHHHT-T-----SSCHHHHHHHH----H-------------TSCTTCEEEEECSSC---
T ss_pred             HHHHHHHhcCCCCEEEEeCCCccccC-C-----CCCHHHHHHHH----H-------------hCcCCCEEEEECCCC---
Confidence            77766766788899999998432110 0     01111222222    2             334567899999985   


Q ss_pred             cchhccCCCceEEEeC
Q 019694          154 YAPLIRDGRMEKFYWA  169 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~  169 (337)
                      ++.|+-  .-|.+-++
T Consensus       164 p~~l~e--~AD~VTem  177 (196)
T 1g5t_A          164 HRDILD--LADTVSEL  177 (196)
T ss_dssp             CHHHHH--HCSEEEEC
T ss_pred             cHHHHH--hCcceeee
Confidence            566653  44444443

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.48  E-value=6.4e-05  Score=63.05  Aligned_cols=30  Identities=20%  Similarity=0.058  Sum_probs=26.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|+|.|+||+||||+++.+++.++++++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   31 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV   31 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            488999999999999999999999887643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.47  E-value=4e-05  Score=67.79  Aligned_cols=31  Identities=39%  Similarity=0.542  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .|+.|+|.||||+||||+++.+|+.++..++
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i   34 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI   34 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            4567999999999999999999999997544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.45  E-value=0.00023  Score=70.26  Aligned_cols=39  Identities=10%  Similarity=0.038  Sum_probs=30.6

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~   54 (337)
                      .|+.+...++|.|+||+|||+|+..+|..+    |.+++.++.
T Consensus       198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            367777889999999999999999887653    556666554

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=97.44  E-value=0.00047  Score=51.22  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          169 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       169 ~P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +|+.++|.+|++.+++..    .++.+.|++.|+||+|+||..
T Consensus         2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~   44 (78)
T 3kw6_A            2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG   44 (78)
T ss_dssp             CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence            499999999999999865    556799999999999999973

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.43  E-value=0.00032  Score=69.30  Aligned_cols=90  Identities=14%  Similarity=0.138  Sum_probs=66.9

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe-----CCCCCCcchhc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-----NDFSTLYAPLI  158 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT-----N~~~~ld~aLl  158 (337)
                      ...||++||||+++.+.+ +....+...-+++.|+.++++.++..   .|.....++|++|+|+     |..+ +-|+|+
T Consensus       250 ~~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~  324 (444)
T 1g41_A          250 QNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSD-LIPELQ  324 (444)
T ss_dssp             HHCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGG-SCHHHH
T ss_pred             cCCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhh-cchHHh
Confidence            345999999999986543 23445666678889999999654433   2344678899999998     5444 447776


Q ss_pred             cCCCceEEEeC--CCHHHHHHHHH
Q 019694          159 RDGRMEKFYWA--PTREDRIGVCK  180 (337)
Q Consensus       159 R~gR~d~~i~~--P~~~~R~~Il~  180 (337)
                        |||...+.+  ++.++..+|+.
T Consensus       325 --~R~~i~i~l~~lt~~e~~~Il~  346 (444)
T 1g41_A          325 --GRLPIRVELTALSAADFERILT  346 (444)
T ss_dssp             --TTCCEEEECCCCCHHHHHHHHH
T ss_pred             --cccceeeeCCCCCHHHHHHHHH
Confidence              699999998  88999999983

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.42  E-value=0.00024  Score=62.96  Aligned_cols=39  Identities=21%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|++....++|+||||+|||+++..++...   +...+.++.
T Consensus        18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~   59 (247)
T 2dr3_A           18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL   59 (247)
T ss_dssp             TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            467777889999999999999998876542   445555544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.42  E-value=0.00011  Score=62.13  Aligned_cols=30  Identities=23%  Similarity=0.190  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ...++|.||||+||||+++.++..+|..++
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i   37 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL   37 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence            467899999999999999999999876544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.41  E-value=0.00011  Score=64.03  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=29.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      +.+..+.|.||+|+||||+++.++..+|..  .+++..+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~   63 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF   63 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence            456789999999999999999999999754  4444433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.41  E-value=0.0023  Score=69.37  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..++.|.|+|++|+|||+||+.+++.
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            34678999999999999999998775

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.41  E-value=0.00054  Score=64.91  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      .|+.|+|.||+|+|||++++.+|++++..++.++.-
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            356899999999999999999999999888877544

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=97.39  E-value=0.0006  Score=51.97  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          170 PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       170 P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      |+.++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus        11 Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~   52 (86)
T 2krk_A           11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG   52 (86)
T ss_dssp             CCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence            99999999999999865    566799999999999999974

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.39  E-value=0.00011  Score=65.21  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=26.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      .|+|.||||+||+|+|+.+|+++|++.  +|.+++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl   34 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI   34 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence            478899999999999999999998764  444433

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.38  E-value=0.00074  Score=66.35  Aligned_cols=39  Identities=13%  Similarity=0.001  Sum_probs=30.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~   54 (337)
                      .|+.+...++|.|+||+|||+||..+|...    |.+++.++.
T Consensus       195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            477777889999999999999999887643    556666554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.38  E-value=0.00016  Score=61.62  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      ..+..|.|.|++|+||||+++.++..+   |++++.+++..
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            346678899999999999999999988   88888776543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.36  E-value=9.8e-05  Score=64.91  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -|+|.|+||+||||+++.+++.+++.++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            378999999999999999999999876654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.36  E-value=0.00012  Score=65.91  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=43.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhcCce
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC   86 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~-------l~~~~~Ge~-----~~~ir~~f~~A~~~~~~~~p~   86 (337)
                      ..++++||||+|||+++..++..+   |..++.++...       +.+. .|-.     .....+++..+.+.+....+.
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d   91 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK   91 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence            567889999999999988877665   55666553221       2222 1211     001124454442222235689


Q ss_pred             EEEeccccc
Q 019694           87 CLMINDLDA   95 (337)
Q Consensus        87 Il~IDEiD~   95 (337)
                      +|+|||+.-
T Consensus        92 vViIDEaQ~  100 (223)
T 2b8t_A           92 VIGIDEVQF  100 (223)
T ss_dssp             EEEECSGGG
T ss_pred             EEEEecCcc
Confidence            999999964

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.36  E-value=0.00012  Score=63.14  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~vs   53 (337)
                      .++.|.|.|+||+||||+++.+++.+ |.+++.+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            46779999999999999999999998 57766654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.35  E-value=0.00015  Score=63.86  Aligned_cols=30  Identities=20%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      +..|.|.||+|+||||+++.+++.+|++++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~   34 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLL   34 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            457899999999999999999999997655

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.33  E-value=0.00017  Score=61.52  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=27.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      .|.|.|+||+||||+++.+++.+   |++++...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            47899999999999999999998   88877664

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.28  E-value=0.00055  Score=59.45  Aligned_cols=39  Identities=15%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      ..+..|.|.||+|+||||++++++..+   |...+.+++..+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            456789999999999999999999988   544345554443

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.26  E-value=9.4e-05  Score=64.33  Aligned_cols=32  Identities=25%  Similarity=0.204  Sum_probs=27.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ..++.|.|.|+||+||||+++.+++.++...+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~   39 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV   39 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            34678999999999999999999998865433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.26  E-value=0.00021  Score=61.79  Aligned_cols=30  Identities=30%  Similarity=0.305  Sum_probs=27.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|.|.|++|+|||++++.+|+.+|++++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~   33 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSS   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence            789999999999999999999999877754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.26  E-value=0.00017  Score=65.14  Aligned_cols=41  Identities=27%  Similarity=0.579  Sum_probs=33.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCc--------EEecCCcccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELES   59 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~--------i~vs~s~l~~   59 (337)
                      ..|..|.|.|+||+||||+|+.+++.++.++        ..++..++..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            4577899999999999999999999999763        3566666554

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.26  E-value=0.00018  Score=62.19  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ++.|+|.|+||+||||+++.+++.++..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            5678999999999999999999998874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.26  E-value=0.00016  Score=62.20  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=25.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .|.|.|+||+||||+++.+++.++..++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            4789999999999999999999998655

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.25  E-value=0.0001  Score=62.72  Aligned_cols=25  Identities=28%  Similarity=0.066  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.|+|.|+||+||||+++.+++.++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999886

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.24  E-value=0.00018  Score=63.91  Aligned_cols=30  Identities=33%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -|+|.|+||+||||+++.+++.+++.++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            478999999999999999999998755443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.24  E-value=0.00021  Score=64.73  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      .|..|.|.||||+|||++++.+|+.+++.++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d   39 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD   39 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence            46789999999999999999999999976543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.24  E-value=0.0012  Score=61.90  Aligned_cols=35  Identities=20%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      ..|..++|.||+|+||||++..+|..+   +..+..+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~  139 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA  139 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence            467889999999999999999998765   44444443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.24  E-value=0.00017  Score=62.66  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=25.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      +..|.|.||+|+||||+++.++. +|.+++.
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id   31 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVD   31 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence            35688999999999999999987 8877653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.23  E-value=0.00019  Score=61.87  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|..|.|.|++|+||||+++.+++. |++++..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~   38 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL   38 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence            3678999999999999999999998 7766643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.22  E-value=0.00011  Score=63.82  Aligned_cols=29  Identities=17%  Similarity=0.125  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      .|+.|.|.|+||+||||+++.+++.++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~   36 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999987543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.21  E-value=0.00017  Score=62.50  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      .|.|.|++|+||||+++.+++ +|++++..+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d   32 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD   32 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence            588999999999999999999 887665543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.20  E-value=0.00076  Score=64.29  Aligned_cols=36  Identities=22%  Similarity=0.158  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      .++.|+|.||+|+|||+|+..+|++++..++..+.-
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            346799999999999999999999999877765544

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.17  E-value=0.00086  Score=58.69  Aligned_cols=40  Identities=13%  Similarity=0.098  Sum_probs=31.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL   57 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l   57 (337)
                      ...+..|+|.|+||+||||+++.++..++    .+++.+++..+
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            45567899999999999999999998764    55777765444

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.17  E-value=0.0029  Score=59.32  Aligned_cols=39  Identities=15%  Similarity=-0.118  Sum_probs=30.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|+.+..-++|.|+||+|||+|+..+|...   +.+++.++.
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            477777889999999999999999988654   345555543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.16  E-value=0.00069  Score=59.02  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      ++..++...+.. ....+..+.|.||+|+||||+++.++..+   +.+++..+.
T Consensus         6 ~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~   58 (201)
T 1rz3_A            6 RIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (201)
T ss_dssp             HHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             HHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence            344444443333 24557789999999999999999999875   555555543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.15  E-value=0.00021  Score=62.27  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=29.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh-CCCcEEe
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMM   52 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i~v   52 (337)
                      .++.+..|.|.|+||+||||+++.++..+ ++.++..
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~   53 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ   53 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence            45667789999999999999999999987 5554433

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.14  E-value=0.002  Score=58.01  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=26.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      ...|++.|+||+|||+++-.+|..+   |..++.+..
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~   42 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV   42 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3568999999999999998887764   666654444

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.14  E-value=0.00043  Score=67.60  Aligned_cols=37  Identities=22%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      ..|..|+|.|+||+||||+|+.+++.+++.  .++...+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~  292 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL  292 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence            357889999999999999999999998754  4454444

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.13  E-value=0.00049  Score=69.28  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~   56 (337)
                      .|..|+|.|.||+||||+|+.+|+.+++   ....++..+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            4677999999999999999999999854   444455443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.13  E-value=0.00034  Score=61.28  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             hHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694            4 LVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++..++......  .+.+..+.|.||+|+|||||++.++..+.
T Consensus         7 ~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A            7 LCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             HHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            333444443333  45567889999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.11  E-value=0.00052  Score=62.90  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++...++|.||+|+||||+.++++...
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            4555678999999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.09  E-value=0.00028  Score=61.76  Aligned_cols=33  Identities=30%  Similarity=0.601  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      -..|.|+|++||||||+++.+++.+|++++..+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D   44 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD   44 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence            356889999999999999999999898766543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.08  E-value=0.00039  Score=61.00  Aligned_cols=32  Identities=34%  Similarity=0.481  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|..|.|.|++|+||||+++.++. +|.+++..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~   34 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA   34 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence            367899999999999999999988 88765543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.08  E-value=0.00044  Score=59.15  Aligned_cols=37  Identities=11%  Similarity=0.130  Sum_probs=28.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s   55 (337)
                      ..+..|+|.|+||+||||+++.++..++   ..+..++..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d   50 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD   50 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence            3567789999999999999999999874   344555443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.07  E-value=0.0015  Score=64.37  Aligned_cols=70  Identities=16%  Similarity=0.193  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc-------------------c-CCCCChHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-------------------S-GNAGEPAKLIRQRYREA   76 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~-------------------~-~~~Ge~~~~ir~~f~~A   76 (337)
                      .|..|++.|+||+||||++..+|..+   |..+..+++....                   . .....+...++..+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999998765   5666666544221                   1 11123444445555555


Q ss_pred             HHHHHhcCceEEEeccc
Q 019694           77 ADIIKKGKMCCLMINDL   93 (337)
Q Consensus        77 ~~~~~~~~p~Il~IDEi   93 (337)
                          +.....+|+||..
T Consensus       179 ----~~~~~DvVIIDTa  191 (443)
T 3dm5_A          179 ----KSKGVDIIIVDTA  191 (443)
T ss_dssp             ----HHTTCSEEEEECC
T ss_pred             ----HhCCCCEEEEECC
Confidence                6666889999975

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.05  E-value=0.00046  Score=65.11  Aligned_cols=39  Identities=13%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      +.|+.|+|.||+|+|||+||..+|+.++..++..+.-.+
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv   46 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI   46 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence            457789999999999999999999999987776655443

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.05  E-value=0.00032  Score=61.52  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |..|.|.|++|+|||++++.+++.+|++++..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~   34 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT   34 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence            45789999999999999999999999876644

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.03  E-value=0.0023  Score=63.05  Aligned_cols=39  Identities=15%  Similarity=-0.098  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      |+.+..-++|.|+||+|||+||-.+|...   |.+++.++..
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            67777789999999999999999887654   5566666543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.02  E-value=0.00069  Score=64.97  Aligned_cols=68  Identities=12%  Similarity=0.142  Sum_probs=40.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecC-Ccccc---------CCCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG----INPIMMSA-GELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~-s~l~~---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      ..+++.||+|+||||+.++++..+.    ..++.+.. .++..         ..++.........+..|    -...|.+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdv  199 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDI  199 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCE
Confidence            3588999999999999999988652    33332211 11110         01111111122233333    5789999


Q ss_pred             EEeccc
Q 019694           88 LMINDL   93 (337)
Q Consensus        88 l~IDEi   93 (337)
                      |++||+
T Consensus       200 illDEp  205 (356)
T 3jvv_A          200 ILVGEM  205 (356)
T ss_dssp             EEESCC
T ss_pred             EecCCC
Confidence            999998

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.02  E-value=0.00035  Score=64.42  Aligned_cols=30  Identities=33%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh-CCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM-GINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l-~~~~i   50 (337)
                      |+.|+|.|+||+||||+++.+++++ ++.++
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i   32 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI   32 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence            5789999999999999999999974 55444

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.02  E-value=0.00045  Score=62.64  Aligned_cols=30  Identities=17%  Similarity=0.356  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ...|.|.||+|+||||+++.+|+++|+.++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~   56 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLL   56 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence            357889999999999999999999998655

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.02  E-value=0.002  Score=64.21  Aligned_cols=39  Identities=10%  Similarity=-0.048  Sum_probs=30.8

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG   55 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s   55 (337)
                      |+.+...++|.|+||+|||+|+..+|...    |.+++.++..
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            67777789999999999999999988764    4456666543

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.01  E-value=0.00052  Score=61.27  Aligned_cols=34  Identities=18%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ...+..|.|.|++|+|||++++.+++.+|++++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d   46 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD   46 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            3456679999999999999999999999977654

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.00  E-value=0.0018  Score=58.15  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=27.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      .++|.||+|+|||.++.+++.+++...+.+...
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~  142 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence            488999999999999999999887776666544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.99  E-value=0.0004  Score=64.18  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|..|.|.|+||+||||+|+.++ ++|++++..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~  105 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS  105 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence            36789999999999999999999 688765543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.98  E-value=0.00041  Score=63.33  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ...|.|.|++|+||||+++.+|..+|++++..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~   79 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC   79 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence            45799999999999999999999999877754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.94  E-value=0.00046  Score=59.51  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +..+..+.|.||+|+||||+++.++..+
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3456789999999999999999999876

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.93  E-value=0.00047  Score=60.08  Aligned_cols=28  Identities=21%  Similarity=0.183  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ..++.|+|.||||+||||+++.+++.++
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3467789999999999999999999885

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.82  E-value=0.001  Score=63.98  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++...++|.||+|+||||+.++++..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4455678999999999999999998865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.81  E-value=0.0028  Score=60.33  Aligned_cols=39  Identities=10%  Similarity=-0.030  Sum_probs=30.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|+.+..-++|.|+||+|||+|+..+|...   +.++..++.
T Consensus        41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl   82 (338)
T 4a1f_A           41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL   82 (338)
T ss_dssp             CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            377777789999999999999999987763   556555544

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.79  E-value=0.00079  Score=64.22  Aligned_cols=34  Identities=24%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      ++.|+|.||+|+|||++|+.+|..++..++..+.
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds   40 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS   40 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence            4679999999999999999999999966555543

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.78  E-value=0.0023  Score=62.95  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=28.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|..+++.||+|+||||++..+|..+   |..+..+++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~  133 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA  133 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            47889999999999999999998765   566655554

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.76  E-value=0.00085  Score=63.39  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      ++.|+|.||+|+|||+|+..+|+.++..++..+.-
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            45788999999999999999999998766655443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.76  E-value=0.00082  Score=58.90  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +.+..+.|.||+|+||||+++.++..+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            34667899999999999999999998753

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.76  E-value=0.00072  Score=58.81  Aligned_cols=33  Identities=24%  Similarity=0.526  Sum_probs=27.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC--CCcEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM   51 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~--~~~i~   51 (337)
                      +.+..+.|.||+|+||||+++.++..++  +.++.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~   38 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP   38 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            4567789999999999999999999887  54443

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=96.76  E-value=0.00099  Score=58.49  Aligned_cols=30  Identities=17%  Similarity=0.182  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ..|.|.|++|||||++++.+|+++|++|+.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            478999999999999999999999999883

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.75  E-value=0.00099  Score=56.96  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ..++|.||+|+||||+++.++...+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g   28 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDN   28 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCC
Confidence            45789999999999999999986643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.72  E-value=0.0018  Score=61.17  Aligned_cols=38  Identities=37%  Similarity=0.540  Sum_probs=31.0

Q ss_pred             HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694            9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus         9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ...++.....+.|..+.|.||+|+||||+++.++..++
T Consensus        80 ~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           80 TYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             HHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34445555567788999999999999999999998875

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.72  E-value=0.017  Score=58.56  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh-------CCCcEEecCCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAGE   56 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l-------~~~~i~vs~s~   56 (337)
                      -.+|+.|.+|+|||++.+.+...+       .+.++.++...
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg  256 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM  256 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence            368999999999999999876654       24577776653

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.69  E-value=0.0011  Score=64.52  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      +++.|+|.||+|+|||+|+..+|+.++..++..+.
T Consensus         1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            45678999999999999999999999877665543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.69  E-value=0.0011  Score=56.58  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.+.|.||+|+|||||++.++..+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46789999999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.69  E-value=0.0033  Score=64.64  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=33.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      .+..|+|.|+||+||||+|+++++.+   |.+++.+++..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i   91 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   91 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence            46779999999999999999999999   999988865444

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.67  E-value=0.0012  Score=56.89  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      ....+.|.||+|+||||+++.++..+.  .+.+...
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~   39 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISIS   39 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECCC
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEece
Confidence            456788999999999999999998853  4444443

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.65  E-value=0.00091  Score=60.36  Aligned_cols=30  Identities=33%  Similarity=0.471  Sum_probs=25.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      -+.|.||||+||||+|+.+++.++++.+..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            467899999999999999999999876533

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.64  E-value=0.0018  Score=60.41  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             hhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           10 KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        10 k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.++.......+..+.|.||+|+||||+++.++..++
T Consensus        69 ~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           69 EQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             HHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3344333445677899999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.61  E-value=0.0018  Score=60.21  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=26.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ..+.|..|.|.||+|+||||+++.++..++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            456688999999999999999999998875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.50  E-value=0.016  Score=57.91  Aligned_cols=39  Identities=10%  Similarity=0.091  Sum_probs=27.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHH--HHHh--CCCcEEecCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSAG   55 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~ai--A~~l--~~~~i~vs~s   55 (337)
                      +++....++|.||+|+|||+|++.+  +...  +-..+.+++.
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~   77 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   77 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            5666778999999999999999994  3322  3344555443

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.48  E-value=0.0025  Score=60.26  Aligned_cols=70  Identities=11%  Similarity=0.039  Sum_probs=43.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCcccc-----C---CCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELES-----G---NAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l~~-----~---~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      ...++|.||+|+|||||.++++.....  ..+.+.+.....     .   ++.......+.....|    -...|.+|++
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~a----L~~~p~ilil  246 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIIL  246 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHH----hhhCCCEEEE
Confidence            356899999999999999999987642  345554332110     0   1100111223444444    5678999999


Q ss_pred             cccc
Q 019694           91 NDLD   94 (337)
Q Consensus        91 DEiD   94 (337)
                      ||.-
T Consensus       247 dE~~  250 (330)
T 2pt7_A          247 GELR  250 (330)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            9974

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.48  E-value=0.0019  Score=57.99  Aligned_cols=31  Identities=35%  Similarity=0.705  Sum_probs=25.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ++.+..|.|.||.|+||||+++.++..+|..
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            4455678999999999999999999988754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.45  E-value=0.0013  Score=58.20  Aligned_cols=33  Identities=24%  Similarity=0.087  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      .++|+|.||+|+|||+||..+++... .++..+.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            67899999999999999999998866 5554443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.41  E-value=0.0025  Score=57.03  Aligned_cols=29  Identities=17%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ...++-|.|.||||+||||+++.+++.++
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            34567788999999999999999999986

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=96.40  E-value=0.002  Score=57.65  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ...|.|.|++|||||++++.+|+++|++++.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            3578999999999999999999999998764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.37  E-value=0.0084  Score=60.04  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=27.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      ..|+.|+|.|+||+||||++..+|..+   |..+..++.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~  137 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA  137 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence            347789999999999999999998765   666666655

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.34  E-value=0.0012  Score=57.29  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .|.|.|++|+||||+++.+++.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998853

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=96.33  E-value=0.0017  Score=49.57  Aligned_cols=37  Identities=14%  Similarity=0.105  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus         2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~   42 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS   42 (88)
T ss_dssp             CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHH
Confidence            4578999999998765    456799999999999999963

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.28  E-value=0.0075  Score=61.33  Aligned_cols=39  Identities=8%  Similarity=0.055  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l   57 (337)
                      ..+..|+|.|+||+||||+|+++++.++    .+++.++...+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i  436 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV  436 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence            3467789999999999999999999986    67777765544

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.27  E-value=0.0015  Score=60.72  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL   57 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l   57 (337)
                      +..|.|.||+|+||||+|+.+++.++   ..+..++...+
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            55799999999999999999999776   44555665544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.26  E-value=0.0051  Score=60.77  Aligned_cols=30  Identities=13%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ..|.-|+|.|.||+|||++++.+++.++..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~   66 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI   66 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            346789999999999999999999987543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.25  E-value=0.0062  Score=60.43  Aligned_cols=23  Identities=26%  Similarity=0.645  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      -++|+||+|+|||+|+..++...
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhhh
Confidence            48899999999999999887654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.24  E-value=0.0023  Score=55.71  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +++.+.|.||+|+|||||++.++....
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            456789999999999999999988764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.23  E-value=0.003  Score=55.09  Aligned_cols=30  Identities=17%  Similarity=0.136  Sum_probs=24.0

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.....+.|.||+|+|||||++.++..+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            445556788999999999999999998874

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.18  E-value=0.012  Score=57.09  Aligned_cols=76  Identities=12%  Similarity=0.149  Sum_probs=45.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCc---------------cccCCCCCh-HHHHH---HHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE---------------LESGNAGEP-AKLIR---QRYREAA   77 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~---------------l~~~~~Ge~-~~~ir---~~f~~A~   77 (337)
                      .-++|.||+|+|||+|++.+++..     ++.++.+-.++               +......++ ...++   .....|.
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AE  254 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK  254 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            458999999999999999998754     33333332221               111112222 22222   2233343


Q ss_pred             HHHHhcCceEEEeccccccc
Q 019694           78 DIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        78 ~~~~~~~p~Il~IDEiD~l~   97 (337)
                      .....++..+|++|++-+.+
T Consensus       255 yfrd~G~dVLil~DslTR~A  274 (422)
T 3ice_A          255 RLVEHKKDVIILLDSITRLA  274 (422)
T ss_dssp             HHHHTSCEEEEEEECHHHHH
T ss_pred             HHHhcCCCEEEEEeCchHHH
Confidence            44457889999999987654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.17  E-value=0.002  Score=54.69  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCEL   40 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~a   40 (337)
                      +.+..+.|.||+|+|||||+++
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHH
Confidence            3456789999999999999995

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.15  E-value=0.0049  Score=53.62  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=21.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      |.|.||+|+|||+|++.+.++..-.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~   28 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDS   28 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCC
Confidence            7899999999999999998886533

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.13  E-value=0.0026  Score=58.17  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=25.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|++....++|+||||+|||+|+..++..+
T Consensus        25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           25 PNMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467767789999999999999999998643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.11  E-value=0.0034  Score=57.75  Aligned_cols=38  Identities=16%  Similarity=0.074  Sum_probs=29.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEec
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS   53 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs   53 (337)
                      .++++...++|.||||+|||+|++.+|..+    |..++.++
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            467777789999999999999999998764    43454444

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.10  E-value=0.0035  Score=55.88  Aligned_cols=26  Identities=31%  Similarity=0.270  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      |+.|.|.|++|+||||+++.+++.+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            67799999999999999999999984

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.09  E-value=0.0053  Score=53.98  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .++.+.|.||+|+|||+|+++++....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            356788999999999999999998765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.08  E-value=0.02  Score=53.16  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      .++.+.+.|++|+||||++..+|..+   +..+..+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~  133 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA  133 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence            56788899999999999999998764   44444443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.04  E-value=0.0036  Score=55.33  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++....+.|.||+|+|||||++.++...
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3445568899999999999999999876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.04  E-value=0.022  Score=63.37  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      ++-.-+.|.||.|+|||||++++...+..
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~  470 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYDV  470 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence            44456889999999999999999887643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.03  E-value=0.019  Score=56.36  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s   55 (337)
                      ..|+.|++.|++|+||||++-.+|..+    |..+..+++.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D  138 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD  138 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence            457899999999999999999888664    6677776665

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.98  E-value=0.02  Score=54.15  Aligned_cols=27  Identities=19%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..|..+.|.||+|+||||+++.+|..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999999999998865

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.98  E-value=0.018  Score=53.64  Aligned_cols=34  Identities=21%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      +..+++.|++|+||||++..+|..+   +..+..++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~  134 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA  134 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence            7788999999999999999998765   555555554

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.98  E-value=0.0054  Score=51.81  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++....+.|.||.|+|||||.+.++..+
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3444568899999999999999999987

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.96  E-value=0.0049  Score=57.86  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.+..+.|.||+|+|||||++.|+..+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            56678899999999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.95  E-value=0.0018  Score=58.65  Aligned_cols=29  Identities=17%  Similarity=0.006  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.++-|.|.|++|+||||+++.+++.+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34577899999999999999999999983

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.94  E-value=0.032  Score=60.61  Aligned_cols=24  Identities=25%  Similarity=0.116  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ++.|.|+||+|+|||+||+.+++.
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~d  173 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCLS  173 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHHh
Confidence            678999999999999999999863

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.94  E-value=0.0064  Score=52.71  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      +|++|++|+|||++|+.++.. +.+.+.+..+.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            799999999999999999988 87877777654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.91  E-value=0.044  Score=51.98  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v   52 (337)
                      .+.-|.|.|+||+|||+++..++..+   |..+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi  113 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL  113 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            45678999999999999999998775   4444433

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.83  E-value=0.0026  Score=56.27  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=17.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH-HHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVF-AKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA-~~l   45 (337)
                      +....+.|.||+|+||||+++.++ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445678999999999999999999 765

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.82  E-value=0.0064  Score=62.49  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=21.5

Q ss_pred             EEEEEcCCCchHHHH-HHHHHHH--hCCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQ-CELVFAK--MGINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~l-A~aiA~~--l~~~~i~vs~s   55 (337)
                      -.|++||||||||+. +..|+..  .+..++.+..+
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T  242 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS  242 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence            468999999999964 4444332  25555555544

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.81  E-value=0.0096  Score=55.60  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++.+..+.|.||.|+||||+++.+|..+
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999999875

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.80  E-value=0.02  Score=61.28  Aligned_cols=26  Identities=23%  Similarity=0.043  Sum_probs=21.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +.....++|.||.|+||||+.+.++.
T Consensus       670 ~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          670 EDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCchHHHHHHHHH
Confidence            33456799999999999999998863

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.80  E-value=0.0065  Score=56.97  Aligned_cols=29  Identities=24%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+++...+.|+||+|+|||||+++++..+
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            45556679999999999999999999987

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.75  E-value=0.0047  Score=61.96  Aligned_cols=71  Identities=10%  Similarity=0.112  Sum_probs=43.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCc-cccC-----------CCCChHHHHHHHHHHHHHHHHhcCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKM   85 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~-l~~~-----------~~Ge~~~~ir~~f~~A~~~~~~~~p   85 (337)
                      ...+++|.||+|+||||+.++++..+.-  ..+.+.... +.-.           .++.....+....+.+    -...|
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~----LR~~P  334 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA----LRQRP  334 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT----GGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh----hccCC
Confidence            4557999999999999999999887642  345554332 2100           0011111122233333    46689


Q ss_pred             eEEEecccc
Q 019694           86 CCLMINDLD   94 (337)
Q Consensus        86 ~Il~IDEiD   94 (337)
                      .++++.|+-
T Consensus       335 D~iivgEir  343 (511)
T 2oap_1          335 DYIIVGEVR  343 (511)
T ss_dssp             SEEEESCCC
T ss_pred             CeEEeCCcC
Confidence            999999973

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.75  E-value=0.0068  Score=52.06  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.|++|+|||++++.+...+
T Consensus         4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            4 TMIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            345678999999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.75  E-value=0.047  Score=57.32  Aligned_cols=23  Identities=22%  Similarity=0.001  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ...++|.||.|+||||+.|.++.
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHh
Confidence            45789999999999999999875

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.73  E-value=0.0093  Score=60.28  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l   57 (337)
                      +.+..|+|.|+||+||||+++.+++.++   .++..++...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i  411 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV  411 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence            3457789999999999999999999864   45666665443

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.73  E-value=0.0061  Score=54.13  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      --.|.|+|..|||||++++.+++ +|++++..+
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD   40 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD   40 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence            34789999999999999999987 888776544

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.70  E-value=0.011  Score=57.94  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC---CcEEecCCccccCCCCC----hHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGE----PAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~---~~i~vs~s~l~~~~~Ge----~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ..++|.||+|+||||+.++++..+..   .++.+ ...+.....+.    ....+.-.|..+...+-...|.++++.|+
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi  245 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI  245 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence            45789999999999999999998753   23332 22221110000    00001113433322224568999999986

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.67  E-value=0.0071  Score=52.31  Aligned_cols=28  Identities=21%  Similarity=0.122  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      -+|+||.|++|+|||++|.++.+. |..+
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r-G~~l   43 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR-GHQL   43 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence            469999999999999999999874 5433

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.66  E-value=0.0093  Score=51.41  Aligned_cols=32  Identities=13%  Similarity=-0.046  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMM   52 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~v   52 (337)
                      .+.++++||||+|||+++..++..+   +...+.+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            3568899999999999986665543   5554444

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.63  E-value=0.0057  Score=60.16  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=21.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .++|.|+||||||+++.+++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998876

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.61  E-value=0.0078  Score=53.50  Aligned_cols=28  Identities=14%  Similarity=0.081  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +....+.|.||+|+|||||.+.++....
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3456788999999999999999998765

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.61  E-value=0.11  Score=51.97  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=25.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-------CCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-------~~~~i~vs~s   55 (337)
                      .+|+.|++|+|||++.+++...+       .+.++.++..
T Consensus       169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            68999999999999999986543       2356666544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.60  E-value=0.0069  Score=52.62  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+.|.||+|+||||+.+.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47899999999999999999876

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.55  E-value=0.0086  Score=51.33  Aligned_cols=33  Identities=21%  Similarity=0.082  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      ++.+.|.|++|+|||+++..++..+   |..+..+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            4578999999999999999998875   45544444

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.54  E-value=0.057  Score=57.91  Aligned_cols=22  Identities=23%  Similarity=-0.003  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      ...++|.||.|+||||+.|.++
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999984

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=95.53  E-value=0.0068  Score=53.52  Aligned_cols=39  Identities=21%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-cEEecCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIMMSAG   55 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-~i~vs~s   55 (337)
                      +..|++.|+|+|.||+||+++|+.+.+.+|.. +..++.+
T Consensus         7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~ms   46 (202)
T 3ch4_B            7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLS   46 (202)
T ss_dssp             BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTH
T ss_pred             ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEcc
Confidence            44578999999999999999999998877642 3344443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.53  E-value=0.0089  Score=52.91  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~v   52 (337)
                      ..+-|.|.|++|+||||+++.+++.+.   .+++..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            356788999999999999999999874   454444

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.51  E-value=0.014  Score=55.85  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++.|..++|.||.|+||||+++.+|..+
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            3467789999999999999999999875

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=95.49  E-value=0.019  Score=50.40  Aligned_cols=36  Identities=19%  Similarity=-0.030  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCchHH-HHHHHHHHH--hCCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT-~lA~aiA~~--l~~~~i~vs~s   55 (337)
                      .-+..++|||.|+||| .|.+++.+.  .+..++.++..
T Consensus        19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~   57 (195)
T 1w4r_A           19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA   57 (195)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence            4577889999999999 899988664  46677777643

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=95.43  E-value=0.0092  Score=44.54  Aligned_cols=37  Identities=22%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus         2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~   42 (83)
T 3aji_B            2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS   42 (83)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence            6789999999999765    456689999999999999974

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.40  E-value=0.012  Score=55.09  Aligned_cols=26  Identities=15%  Similarity=0.057  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+..+.|.||+|+||||+++.+|..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999876

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.38  E-value=0.079  Score=55.91  Aligned_cols=25  Identities=24%  Similarity=-0.003  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ....++|+||.|+||||+.|.++.-
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHH
Confidence            3467899999999999999998753

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=95.38  E-value=0.0087  Score=60.83  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=26.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      ...++|+||||||||+++.+++..+   +..++.+..
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap  240 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP  240 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence            4578899999999999999987754   555555443

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.34  E-value=0.016  Score=51.54  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=26.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .++-|.|.|++|+||||+++.+++.++....
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~   34 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK   34 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence            3567889999999999999999999987433

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.33  E-value=0.019  Score=53.96  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      ...|+.+++.||+|+||||++..+|..+   +..+..+..
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~  141 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA  141 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            3567889999999999999999998765   455555544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.32  E-value=0.018  Score=57.45  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +..+..++|.||+|+||||+++.|+..+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            4567789999999999999999999865

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.27  E-value=0.015  Score=52.19  Aligned_cols=26  Identities=15%  Similarity=0.220  Sum_probs=20.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+-|.|.||+|+||||+++.+++.+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45668889999999999999999987

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.27  E-value=0.011  Score=54.95  Aligned_cols=37  Identities=14%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s   55 (337)
                      ..+..++|.||+|+||||++..+|..+    |..+..+...
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D  143 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD  143 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            356789999999999999999998754    4455555543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.27  E-value=0.012  Score=49.72  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |...+|+||.|+|||++.++|+--++.
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            346789999999999999999887753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.26  E-value=0.038  Score=54.44  Aligned_cols=26  Identities=15%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ....+..++.|+||||||++...++.
T Consensus       158 ~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          158 VSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccccEEEEEcCCCCCHHHHHHHHhc
Confidence            34557889999999999999988765

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.23  E-value=0.012  Score=53.15  Aligned_cols=27  Identities=26%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .++-|.|.|++|+||||+++.+++.+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999999998763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.05  E-value=0.012  Score=53.13  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++. ..+.|.||.|+|||||.+.++.-..
T Consensus        22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            455 7888999999999999999987653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.01  E-value=0.075  Score=51.98  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|..+++.|++|+||||++..+|..+   +..+..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~  134 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence            57889999999999999999998765   444554443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.00  E-value=0.012  Score=58.96  Aligned_cols=28  Identities=0%  Similarity=-0.150  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .+..|.|.|.+||||||+++++|+.++.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4467889999999999999999999985

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.92  E-value=0.012  Score=52.87  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++....+.|.||.|+|||||.+.++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444578899999999999999998754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=94.92  E-value=0.019  Score=51.37  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=26.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC----CcEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM   51 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~----~~i~   51 (337)
                      ..++-|.|.|++|+||||+++.+++.++.    +++.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence            34677888999999999999999987654    5555

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=94.91  E-value=0.013  Score=60.08  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+++||||||||+++..++..+
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999877776554

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.91  E-value=0.012  Score=50.36  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.+.|.|++|+|||||++.++..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4688999999999999999988763

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.86  E-value=0.013  Score=59.45  Aligned_cols=40  Identities=15%  Similarity=0.103  Sum_probs=30.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCcc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL   57 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l   57 (337)
                      +.....+.|.|++|+||||++++++..++    ..+..+++..+
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            34556789999999999999999999885    23444555443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.83  E-value=0.013  Score=52.53  Aligned_cols=29  Identities=28%  Similarity=0.257  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +..-..+.|.||.|+|||||.+.++.-..
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34445688999999999999999987553

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.79  E-value=0.01  Score=52.77  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++.-..
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445688999999999999999987543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.74  E-value=0.062  Score=52.67  Aligned_cols=70  Identities=11%  Similarity=0.039  Sum_probs=46.5

Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-------------CC
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------FS  151 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-------------~~  151 (337)
                      |.|+||||+|.+..             .....|+..+.             ++...+ +|++||.             ++
T Consensus       296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~-~il~tn~~~~~i~~~~~~~~~~  348 (456)
T 2c9o_A          296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPI-VIFASNRGNCVIRGTEDITSPH  348 (456)
T ss_dssp             ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred             ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCE-EEEecCCccccccccccccccc
Confidence            47999999997631             22344555555             223344 4444433             77


Q ss_pred             CCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          152 TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       152 ~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      .|++.++.  ||-.+ .+  |+.++..+|++....
T Consensus       349 ~l~~~i~s--R~~~~-~~~~~~~~e~~~iL~~~~~  380 (456)
T 2c9o_A          349 GIPLDLLD--RVMII-RTMLYTPQEMKQIIKIRAQ  380 (456)
T ss_dssp             TCCHHHHT--TEEEE-ECCCCCHHHHHHHHHHHHH
T ss_pred             cCChhHHh--hccee-eCCCCCHHHHHHHHHHHHH
Confidence            88888886  77764 55  899999999987764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.68  E-value=0.015  Score=53.11  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +....+.|.||.|+|||||.++++.-..
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445688999999999999999987654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.64  E-value=0.015  Score=52.27  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++....+.|.||.|+|||||.+.++.-.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445568899999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.64  E-value=0.019  Score=49.10  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-++|.|++|+|||+|.+.++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            45789999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.63  E-value=0.019  Score=54.61  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ..-+.|.||+|+|||||++.++..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5678999999999999999999987643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.59  E-value=0.018  Score=49.11  Aligned_cols=24  Identities=21%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .-+.|.|++|+|||+|.+.++...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            467899999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.58  E-value=0.019  Score=52.50  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ++....+.|.||.|+|||||.+.++.-
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344456889999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.57  E-value=0.014  Score=51.36  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ....+.|.||.|+|||||.+.++..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999999875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.54  E-value=0.021  Score=46.26  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|++.|++|+|||+|...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=94.52  E-value=0.022  Score=50.38  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+-|.|.|++|+||||+++.+++.+
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999877

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.52  E-value=0.017  Score=52.61  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=22.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.||.|+|||||.+.++...
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344568999999999999999998754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=94.51  E-value=0.2  Score=54.25  Aligned_cols=22  Identities=18%  Similarity=-0.020  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      ...++|+||.|+||||+.|.++
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iG  810 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAG  810 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHH
Confidence            4789999999999999999983

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.50  E-value=0.1  Score=49.14  Aligned_cols=28  Identities=32%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ......+.|.|+||+||||++..++..+
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3456778899999999999999998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.50  E-value=0.017  Score=52.16  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-..+.|.||.|+|||||.+.++.-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456889999999999999999874

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=94.50  E-value=0.021  Score=58.41  Aligned_cols=25  Identities=32%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+-++++||||||||+++..+...+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578999999999999888776543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.48  E-value=0.017  Score=52.78  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=26.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s   55 (337)
                      +....+.|.||.|+|||||.+.++.-...  .-+.+++.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~   86 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI   86 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCE
Confidence            44456889999999999999999876542  23444443

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.43  E-value=0.018  Score=52.79  Aligned_cols=28  Identities=21%  Similarity=0.191  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +....+.|.||.|+|||||.+.++..+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445688999999999999999987654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.40  E-value=0.016  Score=52.68  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .-..+.|.||.|+|||||.+.++.-..
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999987653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.40  E-value=0.024  Score=46.17  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|..++...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            456899999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.38  E-value=0.029  Score=48.36  Aligned_cols=26  Identities=19%  Similarity=0.118  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+.-|+|.|++|+|||+|..++....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.37  E-value=0.016  Score=52.35  Aligned_cols=28  Identities=32%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +....+.|.||.|+|||||.+.++.-..
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445688999999999999999987653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.36  E-value=0.016  Score=51.63  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++..+.
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            445688999999999999999988653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.36  E-value=0.016  Score=52.00  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++.-..
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345688999999999999999987653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.35  E-value=0.045  Score=48.73  Aligned_cols=35  Identities=14%  Similarity=0.129  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh--CCCcEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS   53 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l--~~~~i~vs   53 (337)
                      ..+..+++.|.+|+||||++..+|..+  |..+..++
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd   48 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   48 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence            345678899999999999999998776  55555554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.34  E-value=0.018  Score=51.00  Aligned_cols=27  Identities=15%  Similarity=0.201  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++....
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            344588999999999999999987653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.34  E-value=0.016  Score=56.81  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .|..|++.|+||+||||++..+|..+   |..+..+++.
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            46789999999999999999998865   4556666554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.33  E-value=0.025  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|+||+|||+|..++...
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.32  E-value=0.12  Score=50.29  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=43.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh-----CCCcEEecCCc-------cccCC--------CCChH-HHHHH---HHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE-------LESGN--------AGEPA-KLIRQ---RYREAAD   78 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l-----~~~~i~vs~s~-------l~~~~--------~Ge~~-~~ir~---~f~~A~~   78 (337)
                      -++|.|+||+|||+|+..|++..     ++.++.+-.++       +....        ..++. ..++.   ....|..
T Consensus       177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy  256 (427)
T 3l0o_A          177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR  256 (427)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            37899999999999999888853     34434332221       22221        22222 22222   2233433


Q ss_pred             HHHhcCceEEEecccccc
Q 019694           79 IIKKGKMCCLMINDLDAG   96 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l   96 (337)
                      ....++..+|++|++-..
T Consensus       257 frd~G~dVLil~DslTR~  274 (427)
T 3l0o_A          257 LVEFNYDVVILLDSLTRL  274 (427)
T ss_dssp             HHHTTCEEEEEEECHHHH
T ss_pred             HHHcCCCEEEecccchHH
Confidence            444788899999998644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.29  E-value=0.02  Score=52.07  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .....+.|.||.|+|||||.+.++.-..
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445688999999999999999987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.28  E-value=0.024  Score=45.76  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|+..+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.27  E-value=0.021  Score=52.19  Aligned_cols=27  Identities=26%  Similarity=0.244  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.||.|+|||||.+.++.-.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344568899999999999999998754

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.26  E-value=0.025  Score=50.01  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.+..|.|.||.|+||||+++.++..
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            44567889999999999999999887

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=94.26  E-value=0.017  Score=52.19  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      +.|.|+|++|+|||++++.+...+|++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~   29 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVK   29 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence            3588999999999999999998888664

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.034  Score=46.82  Aligned_cols=27  Identities=19%  Similarity=0.114  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+.-|++.|++|+|||+|..++....
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345678999999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.22  E-value=0.018  Score=53.07  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .-..+.|.||.|+|||||.++++.-..
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345688999999999999999987553

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.22  E-value=0.035  Score=46.14  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      +.+.-|++.|++|+|||+|...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456779999999999999998886

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.19  E-value=0.023  Score=54.39  Aligned_cols=26  Identities=27%  Similarity=0.128  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .-..+.|.||.|||||||.+.||.-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcCC
Confidence            33458899999999999999999855

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.19  E-value=0.028  Score=45.55  Aligned_cols=24  Identities=21%  Similarity=0.073  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|..++...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.18  E-value=0.025  Score=51.81  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+.|.||+|+|||||.++++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999998653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.17  E-value=0.028  Score=45.72  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|..++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.17  E-value=0.023  Score=54.22  Aligned_cols=27  Identities=26%  Similarity=0.274  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|||||||.+.||.-.
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            334568899999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.17  E-value=0.019  Score=52.08  Aligned_cols=27  Identities=26%  Similarity=0.217  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++..+.
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345688999999999999999987653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.16  E-value=0.026  Score=54.07  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|||||||.+.+|.-.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            334568899999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.15  E-value=0.019  Score=52.59  Aligned_cols=28  Identities=25%  Similarity=0.307  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.-..+.|.||.|+|||||.++++.-..
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3445688999999999999999987653

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.13  E-value=0.024  Score=59.84  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+++||||||||+++..++..+
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999877776653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.12  E-value=0.022  Score=47.99  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -|+|.|++|+|||+|.+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999976

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.12  E-value=0.027  Score=46.51  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .-|.|.|+||+|||+|.+.++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4588999999999999999975

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.11  E-value=0.026  Score=54.06  Aligned_cols=28  Identities=21%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.-..+.|.||.|||||||.+.||.-..
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            3345688999999999999999988653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.11  E-value=0.019  Score=52.02  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.||.|+|||||.+.++.-.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344568899999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.10  E-value=0.03  Score=45.69  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..-|++.|++|+|||+|.+++....
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            3468999999999999999997753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.09  E-value=0.033  Score=48.20  Aligned_cols=26  Identities=27%  Similarity=0.551  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +..++|.|++|+|||+|+..++..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45788999999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.08  E-value=0.089  Score=47.57  Aligned_cols=23  Identities=13%  Similarity=0.135  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|.|.|+||+|||+|..++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.07  E-value=0.023  Score=56.82  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=24.9

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++..-..++|.||||+|||+|++.++...
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56666779999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.06  E-value=0.03  Score=46.16  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|...+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.05  E-value=0.029  Score=46.12  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|+||+|||+|.+.+...
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            346899999999999999998653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.03  E-value=0.028  Score=54.09  Aligned_cols=27  Identities=22%  Similarity=0.212  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|||||||.+.||.-.
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344568899999999999999998754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.03  E-value=0.031  Score=45.68  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|.+++...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456899999999999999999864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.01  E-value=0.038  Score=52.24  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.....+.|.||||+|||||.++++..+
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4455678899999999999999998764

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.00  E-value=0.052  Score=47.59  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh--CCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM--GINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l--~~~~i~v   52 (337)
                      +-|.|-|+.|+||||+++.+++.+  |.+++..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~   35 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT   35 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence            457789999999999999999988  4454444

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.00  E-value=0.031  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|++.|++|+|||+|...+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.00  E-value=0.029  Score=54.22  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|||||||.+.||.-.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            334568899999999999999998865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.00  E-value=0.03  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|..++...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45899999999999999999754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.99  E-value=0.021  Score=52.62  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ....+.|.||.|+|||||.+.++..+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345688999999999999999987654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.96  E-value=0.023  Score=54.25  Aligned_cols=27  Identities=22%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|||||||.+.||.-.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            334568899999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.95  E-value=0.043  Score=44.79  Aligned_cols=25  Identities=20%  Similarity=0.105  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|++.|++|+|||+|...+...
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.94  E-value=0.025  Score=54.03  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .-..+.|.||.|||||||.+.||.-.
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33468899999999999999998755

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.93  E-value=0.034  Score=45.26  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|..++...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.89  E-value=0.037  Score=45.00  Aligned_cols=21  Identities=14%  Similarity=-0.023  Sum_probs=19.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|++|+|||+|...+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=93.88  E-value=0.016  Score=43.20  Aligned_cols=35  Identities=17%  Similarity=0.142  Sum_probs=18.6

Q ss_pred             HHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          173 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       173 ~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      ++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus         1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~   39 (82)
T 2dzn_B            1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA   39 (82)
T ss_dssp             -------------CEECTTCCSTTTTTSSCCCCHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence            46889999888764    566789999999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.85  E-value=0.033  Score=45.52  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=18.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -|++.|+||+|||+|...+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999853

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.85  E-value=0.033  Score=45.40  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .-|++.|++|+|||+|..++..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3588999999999999999976

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.85  E-value=0.036  Score=45.05  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|.+++...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.80  E-value=0.028  Score=54.07  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .-..+.|.||.|||||||.+.||.-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            34568899999999999999999765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.80  E-value=0.03  Score=45.67  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -|+|.|+||+|||+|.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998853

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.77  E-value=0.025  Score=53.95  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs   53 (337)
                      .-..++|.||+|+|||||+++++.....  ..+.+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie  209 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE  209 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence            3456899999999999999999987642  344444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.77  E-value=0.14  Score=56.89  Aligned_cols=27  Identities=26%  Similarity=0.196  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++-.-|.|.||.|+|||||++++..-.
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence            344568899999999999999997754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.76  E-value=0.04  Score=45.70  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      |...+|+||.|+|||++..|+.--+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4466899999999999999997655

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.75  E-value=0.038  Score=46.04  Aligned_cols=26  Identities=15%  Similarity=0.032  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..+.-|+|.|++|+|||+|..++...
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence            33467899999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.70  E-value=0.047  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .+.-|++.|++|+|||+|...+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            455688999999999999999965

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.70  E-value=0.036  Score=45.61  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|..++...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.70  E-value=0.033  Score=45.95  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|...+...
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456899999999999999998653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.70  E-value=0.045  Score=46.34  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ....-|+|.|++|+|||+|...+...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999999875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.70  E-value=0.039  Score=45.36  Aligned_cols=25  Identities=28%  Similarity=0.162  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..-|++.|++|+|||+|.+.+....
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCC
Confidence            4568999999999999999997653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.68  E-value=0.036  Score=46.31  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|++|+|||+|.+.++..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56889999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.62  E-value=0.04  Score=45.82  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-|++.|++|+|||+|..++....
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCC
Confidence            3458999999999999999998643

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.035  Score=58.65  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=22.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s   55 (337)
                      ..+++||||||||+++..+...+    +..++.+..+
T Consensus       377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t  413 (802)
T 2xzl_A          377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS  413 (802)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence            47899999999998776655432    4455555443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.61  E-value=0.048  Score=47.31  Aligned_cols=26  Identities=19%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.-|+|.|.+|+|||+|+..++....
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45677779999999999999988753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.59  E-value=0.041  Score=45.56  Aligned_cols=24  Identities=21%  Similarity=0.073  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|...+...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            356899999999999999999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.59  E-value=0.05  Score=45.49  Aligned_cols=25  Identities=16%  Similarity=0.024  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|++.|++|+|||+|..++...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3556899999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.57  E-value=0.031  Score=51.02  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ...+.|.||.|+|||||.+.++...
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            4468899999999999999998765

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.56  E-value=0.042  Score=46.09  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|+..++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999999865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.55  E-value=0.037  Score=45.59  Aligned_cols=23  Identities=30%  Similarity=0.146  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ..-|++.|++|+|||+|..++..
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999999854

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.53  E-value=0.036  Score=53.64  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=22.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ++.-..+.|.||.|||||||.+.|+.-
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            344456889999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.52  E-value=0.04  Score=45.41  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|..++...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999875

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=93.51  E-value=0.039  Score=46.23  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ...-|++.|++|+|||+|.+.+...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.51  E-value=0.032  Score=51.74  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.||.|+|||||.+.++...
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            344568899999999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.50  E-value=0.043  Score=45.36  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|..++...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            356899999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.48  E-value=0.076  Score=44.49  Aligned_cols=25  Identities=16%  Similarity=-0.075  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +...-|++.|++|+|||+|...+..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456789999999999999999974

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=93.46  E-value=0.13  Score=46.42  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .-|+|.|+||+|||+|..++..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            4588999999999999999975

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.45  E-value=0.044  Score=46.12  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|+|.|++|+|||+|...+...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3456899999999999999999774

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=93.43  E-value=0.042  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|.+.+...
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            456899999999999999999764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=93.42  E-value=0.13  Score=46.94  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|.|.|+||+|||+|..++...
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            45789999999999999999763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.41  E-value=0.043  Score=45.90  Aligned_cols=25  Identities=16%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..-|+|.|++|+|||+|.+.+....
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3568999999999999999887654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.39  E-value=0.033  Score=52.16  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +++-..+.|.||.|+|||||++.++..+.
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            34456789999999999999999987654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.38  E-value=0.049  Score=51.20  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      -+|+||.|++|+|||++|.++... |..++
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv  172 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLV  172 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence            479999999999999999999774 54443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.32  E-value=0.049  Score=45.29  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=93.32  E-value=0.049  Score=45.15  Aligned_cols=23  Identities=13%  Similarity=0.027  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|.+.+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.28  E-value=0.05  Score=44.92  Aligned_cols=25  Identities=20%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|+|.|++|+|||+|...+...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3456899999999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=93.27  E-value=0.029  Score=47.96  Aligned_cols=27  Identities=15%  Similarity=0.134  Sum_probs=21.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +....-+.|.|++|+|||+|.++++..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            344456899999999999999988643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.26  E-value=0.062  Score=51.06  Aligned_cols=27  Identities=26%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ..+.|.||+|+|||+|.+.++......
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            458899999999999999999998654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=93.23  E-value=0.05  Score=57.18  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..+++.||+|+|||+++..+...
T Consensus       110 ~~vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999977766544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.18  E-value=0.052  Score=45.29  Aligned_cols=24  Identities=21%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|.|.|+||+|||+|.++++..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345889999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.17  E-value=0.052  Score=45.59  Aligned_cols=24  Identities=17%  Similarity=-0.009  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=93.16  E-value=0.14  Score=46.18  Aligned_cols=22  Identities=14%  Similarity=0.046  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|.|.|.||+|||+|..++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4788999999999999999754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.15  E-value=0.044  Score=45.67  Aligned_cols=22  Identities=23%  Similarity=0.081  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|++.|++|+|||+|...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999998763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.15  E-value=0.053  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|+|.|++|+|||+|..++...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.10  E-value=0.066  Score=52.55  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      -.-+.|.||+|+|||+|.+.|+......
T Consensus       157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          157 GQRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            3458899999999999999999987654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.10  E-value=0.053  Score=45.72  Aligned_cols=26  Identities=19%  Similarity=-0.014  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ...-|+|.|++|+|||+|...+....
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34568999999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=93.07  E-value=0.051  Score=46.09  Aligned_cols=24  Identities=17%  Similarity=0.045  Sum_probs=20.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|+||+|||+|.+.+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999999873

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.05  E-value=0.046  Score=45.20  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.04  E-value=0.056  Score=45.76  Aligned_cols=24  Identities=21%  Similarity=0.073  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356889999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=93.04  E-value=0.05  Score=45.64  Aligned_cols=24  Identities=13%  Similarity=0.034  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      +.+.-|++.|++|+|||+|..++.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456779999999999999999884

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=93.02  E-value=0.056  Score=45.61  Aligned_cols=23  Identities=35%  Similarity=0.450  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|++|+|||+|...+...
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            45899999999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.00  E-value=0.056  Score=45.86  Aligned_cols=26  Identities=31%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ...-|+|.|++|+|||+|..++....
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCC
Confidence            34568999999999999999997653

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.00  E-value=0.044  Score=51.46  Aligned_cols=29  Identities=17%  Similarity=-0.023  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .+||||.|++|+|||++|.++.. -|..++
T Consensus       147 g~gvli~G~sG~GKStlal~l~~-~G~~lv  175 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV  175 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence            47999999999999999988754 455444

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.98  E-value=0.058  Score=45.13  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|...+...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.95  E-value=0.062  Score=45.12  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|..++...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999999998654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=92.95  E-value=0.073  Score=43.96  Aligned_cols=24  Identities=13%  Similarity=-0.071  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|++.|++|+|||+|...+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.94  E-value=0.05  Score=45.48  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|++|+|||+|...+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.93  E-value=0.058  Score=45.51  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|++|+|||+|...+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999888764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.90  E-value=0.053  Score=53.57  Aligned_cols=26  Identities=19%  Similarity=0.123  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ....++|.||.|+|||||+|.++...
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34458899999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.90  E-value=0.056  Score=44.80  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|++|+|||+|...+...
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            46889999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.89  E-value=0.06  Score=45.20  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|...+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.89  E-value=0.055  Score=45.72  Aligned_cols=25  Identities=24%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ...-|+|.|++|+|||+|...+...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3456899999999999999999764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=92.87  E-value=0.057  Score=51.85  Aligned_cols=27  Identities=30%  Similarity=0.283  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.-..+.|.||.|+|||||.+.++.-.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            334568899999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=92.87  E-value=0.061  Score=45.26  Aligned_cols=24  Identities=17%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|...+...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999999764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.85  E-value=0.062  Score=45.28  Aligned_cols=24  Identities=29%  Similarity=0.164  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999999764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.82  E-value=0.063  Score=45.30  Aligned_cols=25  Identities=16%  Similarity=0.060  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|+|.|++|+|||+|.+.+...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            3456899999999999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.78  E-value=0.069  Score=44.53  Aligned_cols=26  Identities=19%  Similarity=0.106  Sum_probs=21.9

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.+.-|++.|++|+|||+|...+...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            45677999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.74  E-value=0.061  Score=45.64  Aligned_cols=24  Identities=17%  Similarity=-0.009  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.72  E-value=0.075  Score=45.29  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ....-|+|.|++|+|||+|..++...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567899999999999999999754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=92.71  E-value=0.077  Score=50.27  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ...|.|.|+||+|||||..++...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.67  E-value=0.062  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.65  E-value=0.062  Score=45.73  Aligned_cols=24  Identities=17%  Similarity=0.023  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|..++...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            456899999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=92.63  E-value=0.11  Score=45.02  Aligned_cols=33  Identities=15%  Similarity=-0.035  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      -+..+++||+|+|||+.+-.++..+   |..++.+.
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            4678899999999998888777665   66666553

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.58  E-value=0.11  Score=49.53  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=26.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      ....+++.||+|+|||++++.++..+   +..++.++
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            44578999999999999999987653   55555554

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=92.56  E-value=0.075  Score=46.17  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=24.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      |.|-|+-|+||||+++.+++.+   |.+++...
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            5678999999999999999876   66666554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.56  E-value=0.083  Score=45.97  Aligned_cols=27  Identities=26%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |...+|+||.|+|||++..||.--++.
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            456789999999999999999877654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.54  E-value=0.082  Score=44.89  Aligned_cols=26  Identities=15%  Similarity=0.058  Sum_probs=21.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.+.-|+|.|++|+|||+|...+...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999999754

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.48  E-value=0.067  Score=46.16  Aligned_cols=24  Identities=13%  Similarity=0.074  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|.+.+...
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.41  E-value=0.075  Score=45.54  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..-|+|.|++|+|||+|...+....
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568899999999999999998743

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.39  E-value=0.09  Score=44.15  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ...-|+|.|++|+|||+|..++...
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3457899999999999999999763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.36  E-value=0.14  Score=47.69  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..++|.|+.|+||||+.+.+....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            367899999999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=92.32  E-value=0.15  Score=46.08  Aligned_cols=44  Identities=20%  Similarity=0.251  Sum_probs=28.4

Q ss_pred             CchhHHHH--HhhhhcCCCCC---CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694            1 MDKLVVHI--TKNFMSLPNIK---VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus         1 ~~k~~~~i--~k~~l~~~g~~---~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ||+++.-+  +.+.|...|..   ...-|.+.|.||+|||+|..++...
T Consensus         1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~   49 (299)
T 2aka_B            1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence            55555433  22334433332   2235889999999999999999754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=92.31  E-value=0.083  Score=45.25  Aligned_cols=26  Identities=12%  Similarity=-0.005  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..+.-|++.|++|+|||+|...+...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            34567899999999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.31  E-value=0.073  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|.+.+...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            356899999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=92.29  E-value=0.044  Score=45.58  Aligned_cols=25  Identities=20%  Similarity=0.111  Sum_probs=10.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ...-|+|.|++|+|||+|...+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEEEECCCCC------------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999988643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.28  E-value=0.068  Score=52.35  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.|.||+|+|||||.++++..
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            789999999999999999865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.25  E-value=0.083  Score=44.28  Aligned_cols=25  Identities=12%  Similarity=0.112  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .+.-|++.|++|+|||+|.+.+...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.23  E-value=0.074  Score=46.91  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|+|.|++|+|||+|..++...
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHcCC
Confidence            456899999999999999999764

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=92.22  E-value=0.1  Score=44.55  Aligned_cols=24  Identities=17%  Similarity=0.031  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.+++.+|+|+|||+++-.++.+.
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999888776653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=92.20  E-value=0.35  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|.|.|.||+|||+|..++...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.16  E-value=0.078  Score=44.60  Aligned_cols=23  Identities=17%  Similarity=0.036  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|.+.+...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.16  E-value=0.088  Score=44.65  Aligned_cols=25  Identities=16%  Similarity=0.018  Sum_probs=21.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +...-|++.|++|+|||+|...+..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3455699999999999999999854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.16  E-value=0.081  Score=49.06  Aligned_cols=25  Identities=24%  Similarity=0.100  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ...+.|.||+|+|||||.++++ ...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            3568899999999999999998 543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=92.06  E-value=0.084  Score=44.69  Aligned_cols=24  Identities=13%  Similarity=-0.049  Sum_probs=20.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ...-|+|.|++|+|||+|...+..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            345689999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.05  E-value=0.076  Score=50.80  Aligned_cols=25  Identities=24%  Similarity=0.146  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ..+.|.||+|+|||||.++++....
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            4688999999999999999986543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.04  E-value=0.081  Score=45.29  Aligned_cols=24  Identities=17%  Similarity=0.054  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.-|++.|++|+|||+|...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999999764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=92.01  E-value=0.096  Score=44.53  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|+|.|+||+|||+|...+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45889999999999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=91.98  E-value=0.082  Score=45.14  Aligned_cols=23  Identities=17%  Similarity=0.073  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +.-|+|.|++|+|||+|.+.+..
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.96  E-value=0.082  Score=44.69  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .-|+|.|++|+|||+|...+..
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999854

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.93  E-value=0.081  Score=45.10  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +.+.-|+|.|++|+|||+|.+.+..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHh
Confidence            3456789999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.92  E-value=0.087  Score=45.24  Aligned_cols=24  Identities=21%  Similarity=0.081  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|+|.|++|+|||+|...+...
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356899999999999999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.90  E-value=0.072  Score=44.44  Aligned_cols=24  Identities=17%  Similarity=-0.054  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ..-|++.|++|+|||+|...+...
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=91.90  E-value=0.087  Score=44.86  Aligned_cols=23  Identities=22%  Similarity=0.082  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|++|+|||+|...+...
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	1e-13
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	5e-12
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	4e-08
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	8e-07
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	2e-06
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	2e-04
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	0.003

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 21/193 (10%)

Query: 17  NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 76
             ++P  + + G  G GK+     V  +  +  I  S  +      G  A  +R  +  A
Sbjct: 38  GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 97

Query: 77  ADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYN 134
               K+   C + I+++DA   + G           Q +N  L         V++ G   
Sbjct: 98  ----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------VEMDGF-- 142

Query: 135 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD- 191
            E++  + ++   N    L   L+R GR ++     AP  + R  + +   R   +A+D 
Sbjct: 143 -EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV 201

Query: 192 DIVKLVDTFPGQS 204
           D+  L    PG  
Sbjct: 202 DLALLAKRTPGFV 214

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 62.9 bits (153), Expect = 5e-12
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 21/192 (10%)

Query: 18  IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 77
            K+P  + + G  G GK+   + +  +  +    +S  +      G  A  +R  + +A 
Sbjct: 42  GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA- 100

Query: 78  DIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNK 135
              KK   C + I+++DA   + G      +    Q +N  L         V++ G    
Sbjct: 101 ---KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML---------VEMDGF--- 145

Query: 136 EENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-D 192
           E N  + +I   N    L   L+R GR ++      P    R  + K   R   +A D D
Sbjct: 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID 205

Query: 193 IVKLVDTFPGQS 204
              +    PG S
Sbjct: 206 AAIIARGTPGFS 217

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 17  NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 76
            +     +  +G  G GK+   + +  +   N I +   EL +   GE    +R+ + +A
Sbjct: 37  GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 96

Query: 77  ADIIKKGKMCCLMINDLDAGAGRMG--GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 134
               ++   C L  ++LD+ A   G          ++++N  L              M  
Sbjct: 97  ----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE------------MDG 140

Query: 135 KEENPRVPIIVTGNDFSTLYAPLIRDGRME 164
                 V II   N    +   ++R GR++
Sbjct: 141 MSTKKNVFIIGATNRPDIIDPAILRPGRLD 170

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 27/211 (12%), Positives = 53/211 (25%), Gaps = 27/211 (12%)

Query: 1   MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 60
           MD +V    K  +   NI         G    GK+     +    G   + ++       
Sbjct: 136 MDSVVYDFLKCMVY--NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN 193

Query: 61  NAGEP-AKLIRQRYREAADIIK--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATL 117
                        + +        +       IN+LD     + G+ +  VN +  +   
Sbjct: 194 FELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVK--VNLEKKHLNK 251

Query: 118 MNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 177
                 P                   IVT N++S       R  +   F      +  + 
Sbjct: 252 RTQIFPP------------------GIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 293

Query: 178 VCKGIFR--NDNVADDDIVKLVDTFPGQSID 206
             + +            ++ L+   P     
Sbjct: 294 RSEFLLEKRIIQSGIALLLMLIWYRPVAEFA 324

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 21/205 (10%), Positives = 50/205 (24%), Gaps = 3/205 (1%)

Query: 2   DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 61
           ++L  ++ +       ++ P    + G  G GK+     +F +   N I++     +  +
Sbjct: 13  NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 72

Query: 62  AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 121
                 L++   ++    +                        + T     V      + 
Sbjct: 73  PNFDE-LVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATML 131

Query: 122 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 181
                     MY          + T   + T+YA      R             +     
Sbjct: 132 QAKGYETK--MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLE 189

Query: 182 IFRNDNVADDDIVKLVDTFPGQSID 206
                 +  D  +   +     S  
Sbjct: 190 TLHKTGLFSDIRLYNREGVKLYSSL 214

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 25/183 (13%)

Query: 23  ILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADII 80
           ++ + G    GK+     +   +G       +  GE  SG   +    +    R      
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML--- 181

Query: 81  KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 140
              +   ++I+ L    G  GG T     ++     L +            +     +  
Sbjct: 182 ---QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSD------------IGAMAASRG 226

Query: 141 VPIIVTGNDFS---TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVK 195
             +I + N  S    +   +    R        +   +    V              +  
Sbjct: 227 CVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQT 286

Query: 196 LVD 198
              
Sbjct: 287 SYG 289

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 26  IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 85
           ++G  G GK+    ++  ++G+N  + S   +E    G+ A ++     E          
Sbjct: 40  LFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE--KPGDLAAILANSLEEG--------- 88

Query: 86  CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 145
             L I+++   + +        + + +++  +                 + E PR  +I 
Sbjct: 89  DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQ--------GPAARTIRLELPRFTLIG 140

Query: 146 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDD 192
                  + APL+    + +     T E+         R   V   +
Sbjct: 141 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITE 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.95
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.94
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.9
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.77
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.73
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.71
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.54
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.52
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.44
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.44
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.43
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.43
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.43
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.43
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.42
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.34
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.28
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.25
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.25
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.2
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.2
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.19
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	98.96
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.87
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	98.71
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.71
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.63
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.46
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.29
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.28
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.22
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.19
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.19
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.14
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.04
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.03
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.02
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.95
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.91
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.9
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.89
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.89
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.84
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.83
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.83
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.81
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.8
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.8
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.79
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.78
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.76
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.76
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.71
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.66
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.64
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.6
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.42
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.39
d1okkd2	207	GTPase domain of the signal recognition particle r	97.38
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.37
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.29
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.25
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.24
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.21
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.2
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.1
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.06
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.05
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.05
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.01
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.92
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.9
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.77
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.76
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.75
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.75
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.74
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.59
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.55
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.47
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.3
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.05
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.97
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.96
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.8
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.78
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.68
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.67
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.65
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.65
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.65
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.49
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.32
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.28
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.26
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.18
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.12
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.99
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.96
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.78
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.7
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.66
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.65
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.57
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.5
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.45
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.41
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.35
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.32
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.31
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.3
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.27
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.27
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.26
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.17
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.15
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.14
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.14
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.09
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.06
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.03
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.99
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.93
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.91
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.87
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.77
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.74
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.73
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.73
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.72
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.71
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.69
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.69
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.63
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.61
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.47
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.36
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.32
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.29
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.29
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.27
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.17
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.09
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.08
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.07
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.01
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.95
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.93
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.87
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	92.85
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.81
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.8
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.77
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.74
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.71
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.54
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.41
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.41
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.25
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.2
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.18
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	92.1
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.08
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.89
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	91.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.67
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.62
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.56
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.38
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	91.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.2
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.82
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.78
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.75
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.6
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.58
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.36
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.69
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.43
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.34
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.92
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.73
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.63
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.54
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	88.38
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.91
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	87.65
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.92
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	86.25
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.94
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.75
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.64
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.57
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	84.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	84.59
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	84.48
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.47
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.34
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	83.88
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	83.82
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.12
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.1
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	82.76
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	82.41
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	82.38
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	82.03
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.91
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.96
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.81
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.28

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-37  Score=284.96  Aligned_cols=177  Identities=21%  Similarity=0.294  Sum_probs=149.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..|.++|+|+|||||||||||++|+++|++++.+++.++++++.++|+|++++.++.+|+.|    +..+||||||||||
T Consensus        39 ~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A----~~~~P~il~iDeiD  114 (256)
T d1lv7a_          39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEID  114 (256)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHH
T ss_pred             HcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHHHHHHHH----HHcCCEEEEEEChh
Confidence            45899999999999999999999999999999999999999999999999999999999999    99999999999999


Q ss_pred             cccccCCCC--cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           95 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        95 ~l~~~~~~~--~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      ++++.++..  .......+.++ .|++.+|        +.   ....+|+||+|||+++.||++++||||||+.+++  |
T Consensus       115 ~l~~~r~~~~~~~~~~~~~~~~-~ll~~~d--------~~---~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P  182 (256)
T d1lv7a_         115 AVGRQRGAGLGGGHDEREQTLN-QMLVEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP  182 (256)
T ss_dssp             HHTCCCSTTSCCTTCHHHHHHH-HHHHHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCC
T ss_pred             hhCccCCCCCCCCcHHHHHHHH-HHHHHhh--------CC---CCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCc
Confidence            998766422  12223334444 4445555        33   3456899999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCCC----CCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~~----l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++.+..    ++...+++.++||+|+||..
T Consensus       183 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~  223 (256)
T d1lv7a_         183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN  223 (256)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHH
Confidence            99999999999987654    45589999999999999864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.7e-37  Score=280.49  Aligned_cols=179  Identities=20%  Similarity=0.278  Sum_probs=150.1

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      +...|.++|+|||||||||||||++|+++|++++++++.++++++.++|+|++++.++.+|..|    +..+||||||||
T Consensus        34 ~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a----~~~~p~Ii~iDe  109 (247)
T d1ixza_          34 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDE  109 (247)
T ss_dssp             HHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH----TTSSSEEEEEET
T ss_pred             HHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHHHHHHHH----HHcCCEEEEEEC
Confidence            4456899999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             cccccccCCCCc--ccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC-
Q 019694           93 LDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-  169 (337)
Q Consensus        93 iD~l~~~~~~~~--~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~-  169 (337)
                      ||++++.++...  ......+.+ +.|++.++        +.   ....+|+||+|||+++.||++++|+||||+.|++ 
T Consensus       110 id~l~~~r~~~~~~~~~~~~~~~-~~ll~~~d--------~~---~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~  177 (247)
T d1ixza_         110 IDAVGRKRGSGVGGGNDEREQTL-NQLLVEMD--------GF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID  177 (247)
T ss_dssp             HHHHHC---------CHHHHHHH-HHHHHHHH--------TC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred             hhhhCccCCCCCCCCcHHHHHHH-HHHHHHhh--------CC---CCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEEC
Confidence            999987764211  122223334 34455555        33   4457899999999999999999999999999999 


Q ss_pred             -CCHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          170 -PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       170 -P~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                       |+.++|.+|++.++...    +++.+.+++.++||+|+||..
T Consensus       178 ~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~  220 (247)
T d1ixza_         178 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN  220 (247)
T ss_dssp             SCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHH
Confidence             99999999999998654    445688999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-36  Score=276.64  Aligned_cols=178  Identities=22%  Similarity=0.322  Sum_probs=152.6

Q ss_pred             hcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecc
Q 019694           13 MSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND   92 (337)
Q Consensus        13 l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDE   92 (337)
                      +...|+++|+|+|||||||||||++++++|++++.+++.++++++.+.++|+.+..++.+|..|    +..+||||||||
T Consensus        30 ~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A----~~~~p~il~iDe  105 (258)
T d1e32a2          30 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDE  105 (258)
T ss_dssp             HHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHHHHHHHH----HHTCSEEEEESS
T ss_pred             HHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHHHHHHHH----HhcCCeEEEehh
Confidence            3356999999999999999999999999999999999999999999999999999999999999    999999999999


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      +|.+++++++ .......+.+. .++..++        +.   ....+|+||+|||+++.||++++||||||+.+++  |
T Consensus       106 id~l~~~r~~-~~~~~~~~~~~-~~~~~~~--------~~---~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P  172 (258)
T d1e32a2         106 LDAIAPKREK-THGEVERRIVS-QLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIP  172 (258)
T ss_dssp             GGGTCCHHHH-CCCTTHHHHHH-HHHHHHH--------TC---CCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCC
T ss_pred             hhhhccCCCC-CCCchHHHHHH-Hhccccc--------cc---cccCCccEEEeCCCccccchhhhhcccccceeECCCC
Confidence            9999977652 22223333343 3334433        22   4567799999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++++.    +++.+.|++.|+||+|+||..
T Consensus       173 ~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~  213 (258)
T d1e32a2         173 DATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA  213 (258)
T ss_dssp             CHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred             CHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHH
Confidence            9999999999999765    445689999999999999974

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.7e-35  Score=269.11  Aligned_cols=179  Identities=21%  Similarity=0.323  Sum_probs=149.4

Q ss_pred             cCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccc
Q 019694           14 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL   93 (337)
Q Consensus        14 ~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEi   93 (337)
                      ...|+++|+|||||||||||||++|+++|++++++++.++.+++.+.+.|+.+..++.+|..|    +..+||||||||+
T Consensus        34 ~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A----~~~~p~il~idei  109 (265)
T d1r7ra3          34 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDEL  109 (265)
T ss_dssp             HHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSCTTTHHHHHHHHHHHH----HHTCSEEEEESSG
T ss_pred             HhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhccccchHHHHHHHHHHH----HhcCCcceeHHhh
Confidence            456999999999999999999999999999999999999999999999999999999999999    9999999999999


Q ss_pred             ccccccCCCC-cccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--C
Q 019694           94 DAGAGRMGGT-TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        94 D~l~~~~~~~-~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      |.++..++.. .+.......+.+.|++.++        +.   ....+|+||+|||+++.||++++|+|||++.+++  |
T Consensus       110 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~--------~~---~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p  178 (265)
T d1r7ra3         110 DSIAKARGGNIGDGGGAADRVINQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  178 (265)
T ss_dssp             GGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCC
T ss_pred             hhccccCCCcCCCCcHHHHHHHHHHHHHhh--------Cc---CCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecch
Confidence            9999765411 1221222223344555555        33   3456799999999999999999999999999999  9


Q ss_pred             CHHHHHHHHHHhccCC----CCCHHHHHHHhcCCCchhhHh
Q 019694          171 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF  207 (337)
Q Consensus       171 ~~~~R~~Il~~~~~~~----~l~~~~la~l~~gf~gadl~~  207 (337)
                      +.++|.+|++.++++.    +++.+.+++.|+||+++||..
T Consensus       179 ~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~  219 (265)
T d1r7ra3         179 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE  219 (265)
T ss_dssp             CCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHH
Confidence            9999999999998764    456689999999999999974

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.95  E-value=1.9e-30  Score=244.88  Aligned_cols=154  Identities=14%  Similarity=0.067  Sum_probs=120.5

Q ss_pred             CCCCCCCcEEEE-EcCCCchHHHHHHHHHHHhC--CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEec
Q 019694           15 LPNIKVPLILGI-WGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        15 ~~g~~~p~giLL-~GpPGtGKT~lA~aiA~~l~--~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      ..|.+.|+|++| |||||||||++|+++|.+++  .+|+.++++++.++|+|+.++.++.+|+.|    +.  |||||||
T Consensus       116 ~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a----~~--~~ilf~D  189 (321)
T d1w44a_         116 FGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQ--HRVIVID  189 (321)
T ss_dssp             ETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HH--CSEEEEE
T ss_pred             HhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHH----hh--ccEEEee
Confidence            457889999876 89999999999999999986  789999999999999999999999999999    53  8999999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC---CCCcchhccCCCceEEEe
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYW  168 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~---~~ld~aLlR~gR~d~~i~  168 (337)
                      |||++.+.++++.......+.++++|.+ +|        |+   ....+|+||+|||+.   +.|+++++|+||||+.++
T Consensus       190 Eid~~~~~r~~~~~~~~~~r~v~~lL~e-~d--------g~---~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~  257 (321)
T d1w44a_         190 SLKNVIGAAGGNTTSGGISRGAFDLLSD-IG--------AM---AASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSL  257 (321)
T ss_dssp             CCTTTC-----------CCHHHHHHHHH-HH--------HH---HHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEE
T ss_pred             hhhhhccccccCCCCCcchhhhhhhhhh-cc--------cc---ccCCCeEEEEeCCCcccccchhhhhhccCcccceee
Confidence            9999998876433344445667666632 23        45   445679999999953   346677789999999999


Q ss_pred             C--CCHHHHHHHHHHhccCC
Q 019694          169 A--PTREDRIGVCKGIFRND  186 (337)
Q Consensus       169 ~--P~~~~R~~Il~~~~~~~  186 (337)
                      +  |+.++|.+|+..+....
T Consensus       258 v~~pd~~~r~~il~~~~~~~  277 (321)
T d1w44a_         258 VISTDVDGEWQVLTRTGEGL  277 (321)
T ss_dssp             EEECSSTTEEEEEEECBTTC
T ss_pred             cCCCChHHHHHHHHHhccCc
Confidence            9  99999999987776443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.94  E-value=5.5e-28  Score=220.57  Aligned_cols=169  Identities=11%  Similarity=0.136  Sum_probs=126.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ....+|++||||||||||||++|+++|++++.+++.++++++..++.+.. .+.++++|+.|    ++.+||||||||||
T Consensus        35 ~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A----~~~~p~il~iDEid  110 (246)
T d1d2na_          35 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIE  110 (246)
T ss_dssp             CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHH----HTSSEEEEEECCHH
T ss_pred             cCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhh----hhcccceeehhhhh
Confidence            34567899999999999999999999999999999999988777776654 36789999999    99999999999999


Q ss_pred             cccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCHHH
Q 019694           95 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED  174 (337)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~~~  174 (337)
                      +++..+..+  ....+..+ +.|+.+++        +.  .....+|+||+|||+++.+|++.+| +||+..+++|+..+
T Consensus       111 ~l~~~~~~~--~~~~~~~~-~~ll~~l~--------~~--~~~~~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~~~~  176 (246)
T d1d2na_         111 RLLDYVPIG--PRFSNLVL-QALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIAT  176 (246)
T ss_dssp             HHTTCBTTT--TBCCHHHH-HHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEE
T ss_pred             hHhhhcccc--cchhHHHH-HHHHHHhc--------CC--CccccceeeeeccCChhhccchhhc-CccceEEecCCchh
Confidence            988665421  12223333 45556666        22  1235678999999999999887554 69999999988777


Q ss_pred             HHHHHHHhccCCCCCHHHHHHHhcCCCc
Q 019694          175 RIGVCKGIFRNDNVADDDIVKLVDTFPG  202 (337)
Q Consensus       175 R~~Il~~~~~~~~l~~~~la~l~~gf~g  202 (337)
                      |.+|++.+......+..++..+.+.+.|
T Consensus       177 r~~il~~l~~~~~~~~~~~~~i~~~~~g  204 (246)
T d1d2na_         177 GEQLLEALELLGNFKDKERTTIAQQVKG  204 (246)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHcCC
Confidence            7777665544445555444444443333

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=5e-24  Score=200.09  Aligned_cols=158  Identities=16%  Similarity=0.098  Sum_probs=121.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc--cCCCCChHHHHHHHHHHHHHHHH-hcCceEEEecccccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAG   96 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~--~~~~Ge~~~~ir~~f~~A~~~~~-~~~p~Il~IDEiD~l   96 (337)
                      +|+|+||+||||||||+||+++|++++.+++.++++++.  +.+.|++++.++.+|..|...+. ..+||||||||||++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki  127 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI  127 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhh
Confidence            789999999999999999999999999999999999997  44889999999999999843322 346899999999999


Q ss_pred             cccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE----eCCCCCCcchhccCCCceEEEeC--C
Q 019694           97 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA--P  170 (337)
Q Consensus        97 ~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T----TN~~~~ld~aLlR~gR~d~~i~~--P  170 (337)
                      .+++.+ ....+....+.+.|+.++|+-+...   ........+|.+|+|    +|++..++|+++  |||+..+.+  |
T Consensus       128 ~~~~~~-~~~~~~~~gv~~~LL~~~dg~~~~~---~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~--~R~~~~i~~~~~  201 (309)
T d1ofha_         128 CKKGEY-SGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTAL  201 (309)
T ss_dssp             SCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSSCGGGSCHHHH--HTCCEEEECCCC
T ss_pred             hhhccC-cccchhhhHHHHHhhHHhcCCEEec---CCeEEEccceeEEeccchhhcCcccchhhhh--hhhheeeeccCC
Confidence            876653 3333444445556777777322111   011123567888887    577888888887  699999988  9


Q ss_pred             CHHHHHHHHHHhc
Q 019694          171 TREDRIGVCKGIF  183 (337)
Q Consensus       171 ~~~~R~~Il~~~~  183 (337)
                      +..++.+|+..+.
T Consensus       202 ~~~~~~~Il~~~~  214 (309)
T d1ofha_         202 SAADFERILTEPH  214 (309)
T ss_dssp             CHHHHHHHHHSST
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999986543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.77  E-value=1.4e-21  Score=187.08  Aligned_cols=167  Identities=16%  Similarity=0.044  Sum_probs=102.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCC-CCChHHHHHHHHHHHHHH--HHhcCceEEEecc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-AGEPAKLIRQRYREAADI--IKKGKMCCLMIND   92 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~-~Ge~~~~ir~~f~~A~~~--~~~~~p~Il~IDE   92 (337)
                      .|.+.++++|||||||||||++|+++|+.++.+++.+++++..+.+ ++........+|..|...  .....|+++++||
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~De  228 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINN  228 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEeh
Confidence            4777888999999999999999999999999999999988754332 111111111112221000  0123455555555


Q ss_pred             cccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCcc-ccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--
Q 019694           93 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--  169 (337)
Q Consensus        93 iD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~-~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--  169 (337)
                      +|.+...+.|..                     .+.++... ........++|+|||+   ++.+++|++||+..+++  
T Consensus       229 iD~l~~~~dg~~---------------------~~~~~~~~~~~~~~~~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~  284 (362)
T d1svma_         229 LDNLRDYLDGSV---------------------KVNLEKKHLNKRTQIFPPGIVTMNE---YSVPKTLQARFVKQIDFRP  284 (362)
T ss_dssp             HHTTHHHHHCSS---------------------CEEECCSSSCCEEECCCCEEEEECS---CCCCHHHHTTEEEEEECCC
T ss_pred             HhhcccccCCcc---------------------hhhhhhhhhchhhhccCCceeeccc---ccccccccccCceEEeecC
Confidence            555432221110                     01111100 0011123379999996   57888999999999998  


Q ss_pred             CCHHHH-HHHHHHhccCCCCC--HHHHHHHhcCCCchhhH
Q 019694          170 PTREDR-IGVCKGIFRNDNVA--DDDIVKLVDTFPGQSID  206 (337)
Q Consensus       170 P~~~~R-~~Il~~~~~~~~l~--~~~la~l~~gf~gadl~  206 (337)
                      |....| .+++..++++..+.  .+.++.++.+|+|+|+.
T Consensus       285 ~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~  324 (362)
T d1svma_         285 KDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFA  324 (362)
T ss_dssp             CHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSC
T ss_pred             CCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHH
Confidence            544444 34556666665444  47789999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.3e-17  Score=148.72  Aligned_cols=160  Identities=12%  Similarity=0.024  Sum_probs=103.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      +++.++|||||||||||++|+++|++++.+++.+++++...      ...+...+.      .....+++||||+|.+..
T Consensus        33 ~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~------~~~~~~~~~------~~~~~~~~~ide~~~~~~  100 (238)
T d1in4a2          33 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILT------SLERGDVLFIDEIHRLNK  100 (238)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHH------HCCTTCEEEEETGGGCCH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc------HHHHHHHHH------hhccCCchHHHHHHHhhh
Confidence            44568999999999999999999999999999999876532      222333222      345678999999998743


Q ss_pred             cCCCCcccchhhHhHHHHHHhhhCCCccccCCCc-----cccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeC--CC
Q 019694           99 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT  171 (337)
Q Consensus        99 ~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~-----~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~--P~  171 (337)
                      ..             ...++..+..-....+.+.     .......++++|++||++..+++++++  ||...+.+  |+
T Consensus       101 ~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~--r~~~~~~~~~~~  165 (238)
T d1in4a2         101 AV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT  165 (238)
T ss_dssp             HH-------------HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred             HH-------------HhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCcccccccee--eeeEEEEecCCC
Confidence            21             1222222221110011111     011235688999999999999999987  78877766  99


Q ss_pred             HHHHHHHHHHhccCCCCCH--HHHHHHhcCCCchhhH
Q 019694          172 REDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSID  206 (337)
Q Consensus       172 ~~~R~~Il~~~~~~~~l~~--~~la~l~~gf~gadl~  206 (337)
                      .+++..+++.+....++..  +.+..+ ..++..|+.
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~l~~i-~~~s~gd~R  201 (238)
T d1in4a2         166 VKELKEIIKRAASLMDVEIEDAAAEMI-AKRSRGTPR  201 (238)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCHHHHHHH-HHTSTTCHH
T ss_pred             HHHHHHHHHHhhhhccchhhHHHHHHH-HHhCCCCHH
Confidence            9999999998887665543  333333 333344443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2.7e-17  Score=146.79  Aligned_cols=149  Identities=17%  Similarity=0.097  Sum_probs=97.7

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA   97 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~   97 (337)
                      -..+.++|||||||||||++|+++|++++.++..++++....     . .........     .....+|+||||+|.+.
T Consensus        32 ~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~-----~~~~~~i~~iDe~~~~~  100 (239)
T d1ixsb2          32 KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-----P-GDLAAILAN-----SLEEGDILFIDEIHRLS  100 (239)
T ss_dssp             SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS-----H-HHHHHHHHT-----TCCTTCEEEEETGGGCC
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc-----c-hhhHHHHHh-----hccCCCeeeeecccccc
Confidence            346778999999999999999999999999999999875432     1 111111111     13346799999999864


Q ss_pred             ccCCCCcccchhhHhHHHHHHhhhCCCccccCCC-----ccccCCCCCceEEEEeCCCCCCcchhccCCCceEEEeCCCH
Q 019694           98 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPG-----MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR  172 (337)
Q Consensus        98 ~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g-----~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d~~i~~P~~  172 (337)
                      ....             ..++..+++...-...+     .......+++++|++||++...+++.+|++.+...+..|+.
T Consensus       101 ~~~~-------------~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (239)
T d1ixsb2         101 RQAE-------------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTP  167 (239)
T ss_dssp             HHHH-------------HHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCH
T ss_pred             hhHH-------------HhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccCh
Confidence            3211             11111111100000000     01113467889999999999999999886555555555999


Q ss_pred             HHHHHHHHHhccCCCCCH
Q 019694          173 EDRIGVCKGIFRNDNVAD  190 (337)
Q Consensus       173 ~~R~~Il~~~~~~~~l~~  190 (337)
                      +++..|+...+...++..
T Consensus       168 ~~~~~i~~~~~~~~~i~~  185 (239)
T d1ixsb2         168 EELAQGVMRDARLLGVRI  185 (239)
T ss_dssp             HHHHHHHHHHHGGGCCCB
T ss_pred             hhhhHHHHHHHHHhCCcc
Confidence            999999988887665543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.54  E-value=5.4e-15  Score=130.94  Aligned_cols=158  Identities=17%  Similarity=0.198  Sum_probs=103.6

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccccCCCCChHHHHHHHHHHHHHH--
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--   79 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~--   79 (337)
                      ..+++|+....  . ..+||+||||+|||++|+++|++++     ..++.+++++..+      ...++..+......  
T Consensus        34 ~~l~~~i~~~~--~-~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~------~~~~~~~~~~~~~~~~  104 (231)
T d1iqpa2          34 KRLKHYVKTGS--M-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKP  104 (231)
T ss_dssp             HHHHHHHHHTC--C-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCC--C-CeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccc------hhHHHHHHHHHHhhhh
Confidence            34455555332  2 3589999999999999999999875     3567777664321      12223333332111  


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhcc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR  159 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR  159 (337)
                      .....+.|++|||+|.+....             ...|+.+++             .....+.+|++||..+.+++++..
T Consensus       105 ~~~~~~~iilide~d~~~~~~-------------~~~ll~~l~-------------~~~~~~~~i~~~n~~~~i~~~l~s  158 (231)
T d1iqpa2         105 IGGASFKIIFLDEADALTQDA-------------QQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS  158 (231)
T ss_dssp             GGGCSCEEEEEETGGGSCHHH-------------HHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH
T ss_pred             ccCCCceEEeehhhhhcchhH-------------HHHHhhhcc-------------cCCcceEEEeccCChhhchHhHhC
Confidence            124567899999999764321             122334443             334667899999999999999986


Q ss_pred             CCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHHHHhcCCC
Q 019694          160 DGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFP  201 (337)
Q Consensus       160 ~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la~l~~gf~  201 (337)
                        |+..+..- |+..+...+++..+...++  +.+.+..+++.+.
T Consensus       159 --R~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~  201 (231)
T d1iqpa2         159 --RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE  201 (231)
T ss_dssp             --TEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHT
T ss_pred             --ccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence              67654333 9999999999999887776  4555555554433

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=5.2e-14  Score=125.56  Aligned_cols=151  Identities=17%  Similarity=0.201  Sum_probs=92.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCCCChHHHHHHHHHHH--------------HHHHHh
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA--------------ADIIKK   82 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A--------------~~~~~~   82 (337)
                      +...++++|||||||||||++|+++|++++.+++.++.++..+.+      .++..+..+              ......
T Consensus        48 ~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (253)
T d1sxja2          48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT------LLNAGVKNALDNMSVVGYFKHNEEAQNLN  121 (253)
T ss_dssp             STTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH------HHHHTGGGGTTBCCSTTTTTC----CCSS
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhhH------HHHHHHHHHhhcchhhhhhhhhhhccccc
Confidence            455667999999999999999999999999999999988765431      111111110              000124


Q ss_pred             cCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCC
Q 019694           83 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR  162 (337)
Q Consensus        83 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR  162 (337)
                      ..+.++++||+|.+.....    .      ....+++...             .....++++++++....++ ++.   |
T Consensus       122 ~~~~vi~ide~~~~~~~~~----~------~~~~~~~~~~-------------~~~~~ii~i~~~~~~~~~~-~l~---~  174 (253)
T d1sxja2         122 GKHFVIIMDEVDGMSGGDR----G------GVGQLAQFCR-------------KTSTPLILICNERNLPKMR-PFD---R  174 (253)
T ss_dssp             TTSEEEEECSGGGCCTTST----T------HHHHHHHHHH-------------HCSSCEEEEESCTTSSTTG-GGT---T
T ss_pred             ccceEEEeeeccccccchh----h------hhHHHhhhhc-------------ccccccccccccccccccc-ccc---c
Confidence            4678999999998754322    1      1111222211             1122334444444444454 444   3


Q ss_pred             ceEEEeC--CCHHHHHHHHHHhccCC--CCCHHHHHHHhcCC
Q 019694          163 MEKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTF  200 (337)
Q Consensus       163 ~d~~i~~--P~~~~R~~Il~~~~~~~--~l~~~~la~l~~gf  200 (337)
                      +...+.+  |+.+++..+++.++..+  .++.+.+..++...
T Consensus       175 ~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s  216 (253)
T d1sxja2         175 VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT  216 (253)
T ss_dssp             TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred             eeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence            4455666  99999999999888654  45666666666544

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.5e-14  Score=127.48  Aligned_cols=156  Identities=13%  Similarity=0.219  Sum_probs=97.4

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----cEEecCCccccCCCCChHHHHHHHHHHHHH--
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGNAGEPAKLIRQRYREAAD--   78 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~--   78 (337)
                      ...+++|+....  .| .+|||||||+|||++|+++|++++..     ++..+.++..+      .......+.....  
T Consensus        23 ~~~L~~~i~~~~--~~-~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~~~~   93 (227)
T d1sxjc2          23 ITTVRKFVDEGK--LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTR   93 (227)
T ss_dssp             HHHHHHHHHTTC--CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBC
T ss_pred             HHHHHHHHHcCC--CC-eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCC------eeeeecchhhccccc
Confidence            445566665443  33 38899999999999999999997543     34445443221      1122222222100  


Q ss_pred             HHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhc
Q 019694           79 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI  158 (337)
Q Consensus        79 ~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLl  158 (337)
                      ........+|+|||+|.+...             ....|+..++             .....+.++++||.+..++++++
T Consensus        94 ~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le-------------~~~~~~~~~~~~~~~~~i~~~i~  147 (227)
T d1sxjc2          94 QIFSKGFKLIILDEADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALL  147 (227)
T ss_dssp             CSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHH
T ss_pred             cccCCCeEEEEEeccccchhh-------------HHHHHHHHhh-------------hcccceeeccccCcHHHhHHHHH
Confidence            001334569999999976321             1233444444             23456789999999999999998


Q ss_pred             cCCCceEEEeC-CCHHHHHHHHHHhccCCCCC--HHHHHHHhc
Q 019694          159 RDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVD  198 (337)
Q Consensus       159 R~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l~--~~~la~l~~  198 (337)
                      +  |+..+-.. |+.++...++..++..+++.  .+.+..+++
T Consensus       148 s--r~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~  188 (227)
T d1sxjc2         148 S--QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE  188 (227)
T ss_dssp             T--TSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred             H--HHhhhccccccccccccccccccccccccCCHHHHHHHHH
Confidence            7  55443333 99999999999888777554  444444443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.3e-13  Score=123.28  Aligned_cols=154  Identities=15%  Similarity=0.146  Sum_probs=96.6

Q ss_pred             HHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCC
Q 019694            8 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAG   63 (337)
Q Consensus         8 i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~G   63 (337)
                      .+++++..  -+.|..+|||||||+|||++|++++++++.+                        ++.++.++.      
T Consensus        23 ~L~~~i~~--~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------   94 (239)
T d1njfa_          23 ALANGLSL--GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------   94 (239)
T ss_dssp             HHHHHHHT--TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCS------
T ss_pred             HHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEecchhc------
Confidence            34444443  3568899999999999999999999987543                        223332210      


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceE
Q 019694           64 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI  143 (337)
Q Consensus        64 e~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~v  143 (337)
                      .....++.+.+.+......+...|+||||+|.+..             .....|+..++             ....++.+
T Consensus        95 ~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~-------------~~q~~Llk~lE-------------~~~~~~~~  148 (239)
T d1njfa_          95 TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKF  148 (239)
T ss_dssp             SSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEE
T ss_pred             CCHHHHHHHHHHHHhccccCCCEEEEEECcccCCH-------------HHHHHHHHHHh-------------cCCCCeEE
Confidence            11233455444431000134557999999998631             11234445554             33566789


Q ss_pred             EEEeCCCCCCcchhccCCCceEEEeC-CCHHHHHHHHHHhccCC--CCCHHHHHHHh
Q 019694          144 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRND--NVADDDIVKLV  197 (337)
Q Consensus       144 I~TTN~~~~ld~aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~--~l~~~~la~l~  197 (337)
                      |++||+++.+.+++..  |+..+... |+.++..+++.......  .++.+.+..++
T Consensus       149 il~tn~~~~i~~~i~S--Rc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~  203 (239)
T d1njfa_         149 LLATTDPQKLPVTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA  203 (239)
T ss_dssp             EEEESCGGGSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred             EEEcCCccccChhHhh--hhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHH
Confidence            9999999999999987  55443333 88888888887776543  45555444443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.6e-12  Score=117.11  Aligned_cols=142  Identities=15%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcccc--CCCCChHHHHHHHHHHHHHHHHhcC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGK   84 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~--~~~Ge~~~~ir~~f~~A~~~~~~~~   84 (337)
                      ..+....+||.||||+|||++++.+|...          +..++.++.+.+.+  +|.|+-+..+..++.++    ....
T Consensus        35 ~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~----~~~~  110 (268)
T d1r6bx2          35 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDT  110 (268)
T ss_dssp             TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSS
T ss_pred             hcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHh----hccC
Confidence            33445689999999999999999999863          56789999999976  67899988888899888    7788


Q ss_pred             ceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-----CCCCcchhcc
Q 019694           85 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-----FSTLYAPLIR  159 (337)
Q Consensus        85 p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-----~~~ld~aLlR  159 (337)
                      ..|+||||+..+++..++ ...   ...+.    +++.+        .   -.++.+-+|+||..     ...-|++|.|
T Consensus       111 ~iIlfiDeih~l~~~g~~-~g~---~~d~a----~~Lkp--------~---L~rg~i~vIgatT~eey~~~~e~d~al~r  171 (268)
T d1r6bx2         111 NSILFIDEIHTIIGAGAA-SGG---QVDAA----NLIKP--------L---LSSGKIRVIGSTTYQEFSNIFEKDRALAR  171 (268)
T ss_dssp             CEEEEETTTTTTTTSCCS-SSC---HHHHH----HHHSS--------C---SSSCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred             CceEEecchHHHhcCCCC-CCc---cccHH----HHhhH--------H---HhCCCCeEEEeCCHHHHHHHHhhcHHHHh
Confidence            899999999999854321 111   11122    22331        1   23677889998873     3356899998


Q ss_pred             CCCceEEEeC-CCHHHHHHHHHHhc
Q 019694          160 DGRMEKFYWA-PTREDRIGVCKGIF  183 (337)
Q Consensus       160 ~gR~d~~i~~-P~~~~R~~Il~~~~  183 (337)
                        ||.++.-- |+.++-.+|++.+.
T Consensus       172 --rF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         172 --RFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             --GEEEEECCCCCHHHHHHHHHHHH
T ss_pred             --hhcccccCCCCHHHHHHHHHHhh
Confidence              88885544 99999999976543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.8e-13  Score=120.63  Aligned_cols=155  Identities=14%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC-----cEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~-----~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      ...+++|+.....  | .+|||||||||||++|+.+|++++..     ++.++.++..      ....++..+.......
T Consensus        24 ~~~L~~~~~~~~~--~-~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~------~~~~i~~~~~~~~~~~   94 (224)
T d1sxjb2          24 IDRLQQIAKDGNM--P-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKK   94 (224)
T ss_dssp             HHHHHHHHHSCCC--C-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBC
T ss_pred             HHHHHHHHHcCCC--C-eEEEECCCCCCchhhHHHHHHHHhccccccccccccccccC------CceehhhHHHHHHHhh
Confidence            3445666654433  3 38899999999999999999998643     5666666432      2233333333321100


Q ss_pred             ---HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchh
Q 019694           81 ---KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL  157 (337)
Q Consensus        81 ---~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aL  157 (337)
                         ......|++|||+|.+....             ...|+..++             .......+|++||..+.+.+++
T Consensus        95 ~~~~~~~~kviiiDe~d~~~~~~-------------~~~ll~~~e-------------~~~~~~~~i~~~~~~~~i~~~l  148 (224)
T d1sxjb2          95 LHLPPGKHKIVILDEADSMTAGA-------------QQALRRTME-------------LYSNSTRFAFACNQSNKIIEPL  148 (224)
T ss_dssp             CCCCTTCCEEEEEESGGGSCHHH-------------HHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHH
T ss_pred             ccCCCcceEEEEEecccccchhH-------------HHHHhhhcc-------------ccccceeeeeccCchhhhhhHH
Confidence               13356799999999764321             112222222             3456678899999999999999


Q ss_pred             ccCCCceEEEeC--CCHHHHHHHHHHhccCCC--CCHHHHHHHhc
Q 019694          158 IRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVD  198 (337)
Q Consensus       158 lR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~--l~~~~la~l~~  198 (337)
                      +.  |+.. +.+  |+.++...++..++..++  ++.+.+..++.
T Consensus       149 ~s--r~~~-i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~  190 (224)
T d1sxjb2         149 QS--QCAI-LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIF  190 (224)
T ss_dssp             HT--TSEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred             HH--HHHH-hhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHH
Confidence            87  5544 555  999999999988886554  45554544443

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.1e-13  Score=121.32  Aligned_cols=76  Identities=14%  Similarity=0.334  Sum_probs=54.4

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCc
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM  163 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~  163 (337)
                      ...+++|||+|.+....             ...|+.+++             ....++.+|+|||+++.++++++.  |+
T Consensus       131 ~~~iiiide~d~l~~~~-------------~~~l~~~~e-------------~~~~~~~~Il~tn~~~~i~~~l~s--R~  182 (252)
T d1sxje2         131 RYKCVIINEANSLTKDA-------------QAALRRTME-------------KYSKNIRLIMVCDSMSPIIAPIKS--QC  182 (252)
T ss_dssp             CCEEEEEECTTSSCHHH-------------HHHHHHHHH-------------HSTTTEEEEEEESCSCSSCHHHHT--TS
T ss_pred             CceEEEecccccccccc-------------chhhhcccc-------------cccccccceeeeccccchhhhhhc--ch
Confidence            45699999999763211             123334444             335667899999999999999885  77


Q ss_pred             eEEEeC--CCHHHHHHHHHHhccCCCC
Q 019694          164 EKFYWA--PTREDRIGVCKGIFRNDNV  188 (337)
Q Consensus       164 d~~i~~--P~~~~R~~Il~~~~~~~~l  188 (337)
                      . .+.+  |+.++..+++..++...++
T Consensus       183 ~-~i~~~~~~~~~~~~~l~~i~~~e~~  208 (252)
T d1sxje2         183 L-LIRCPAPSDSEISTILSDVVTNERI  208 (252)
T ss_dssp             E-EEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred             h-eeeecccchhhHHHHHHHHHHHcCC
Confidence            4 4566  9999999999888766544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.43  E-value=1.5e-13  Score=130.84  Aligned_cols=161  Identities=17%  Similarity=0.181  Sum_probs=98.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHHHHHHHhcCceEEEeccccc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDA   95 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~   95 (337)
                      -.+|..+||.||+|||||.+||++|+.++.+|+.++++++. .+|+|.. +..++.+...+...++....+||++||+|+
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK  144 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDK  144 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGG
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhh
Confidence            35788899999999999999999999999999999999885 4577652 345667766654445666789999999999


Q ss_pred             ccccCCC-CcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-------------------------
Q 019694           96 GAGRMGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------------------  149 (337)
Q Consensus        96 l~~~~~~-~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-------------------------  149 (337)
                      ....... .....+....+...|++++++......++.-......+..+|.|+|-                         
T Consensus       145 ~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~  224 (364)
T d1um8a_         145 ISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLG  224 (364)
T ss_dssp             C--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCS
T ss_pred             hccccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhccccccc
Confidence            8754321 12223345567788888888432111111111122344555555553                         


Q ss_pred             ------------------------CCCCcchhccCCCceEEEeC--CCHHHHHHHHH
Q 019694          150 ------------------------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK  180 (337)
Q Consensus       150 ------------------------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~  180 (337)
                                              ...+.|.|+  ||+|..+.+  .+.++..+|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~--gRi~~iv~f~~L~~~~l~~Il~  279 (364)
T d1um8a_         225 FTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI--GRLPVLSTLDSISLEAMVDILQ  279 (364)
T ss_dssp             CCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH--TTCCEEEECCCCCHHHHHHHHH
T ss_pred             ccccccchhhhhhhhccccHHHHhhhhhHHHHH--HHhcchhhHhhhhHHHHHHHHH
Confidence                                    123566776  799999998  78888888874

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.6e-13  Score=118.15  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCC------------------------cEEecCCccccCCCCChHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY   73 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~------------------------~i~vs~s~l~~~~~Ge~~~~ir~~f   73 (337)
                      -+.|.++||+||||+|||++|+.+|+.+-..                        ++.+....- ...  -....+|++.
T Consensus        21 ~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~--i~~~~ir~l~   97 (207)
T d1a5ta2          21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNT--LGVDAVREVT   97 (207)
T ss_dssp             TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSS--BCHHHHHHHH
T ss_pred             CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc-ccc--cccchhhHHh
Confidence            4678999999999999999999999987321                        111111100 000  1123355554


Q ss_pred             HHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 019694           74 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL  153 (337)
Q Consensus        74 ~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~l  153 (337)
                      +........+...|++|||+|.+..             .....|+.+++             ++..++.+|++||+++.|
T Consensus        98 ~~~~~~~~~~~~kviIide~d~l~~-------------~a~n~Llk~lE-------------ep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2          98 EKLNEHARLGGAKVVWVTDAALLTD-------------AAANALLKTLE-------------EPPAETWFFLATREPERL  151 (207)
T ss_dssp             HHTTSCCTTSSCEEEEESCGGGBCH-------------HHHHHHHHHHT-------------SCCTTEEEEEEESCGGGS
T ss_pred             hhhhhccccCccceEEechhhhhhh-------------hhhHHHHHHHH-------------hhcccceeeeeecChhhh
Confidence            4431111245677999999997642             12345555666             456788999999999999


Q ss_pred             cchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCCCHHHH
Q 019694          154 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDI  193 (337)
Q Consensus       154 d~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l~~~~l  193 (337)
                      .++++.  |+ ..+.+  |+.++...+++...   .++.+.+
T Consensus       152 l~tI~S--Rc-~~i~~~~~~~~~~~~~L~~~~---~~~~~~~  187 (207)
T d1a5ta2         152 LATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TMSQDAL  187 (207)
T ss_dssp             CHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CCCHHHH
T ss_pred             hhhhcc--ee-EEEecCCCCHHHHHHHHHHcC---CCCHHHH
Confidence            999986  66 45555  88888888776543   3455433

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=5.6e-13  Score=124.38  Aligned_cols=148  Identities=18%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CCCc-EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccC-----CCCChHHHHH-HHHHHHHHHHHhcCceEEEec
Q 019694           19 KVPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLIR-QRYREAADIIKKGKMCCLMIN   91 (337)
Q Consensus        19 ~~p~-giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~-----~~Ge~~~~ir-~~f~~A~~~~~~~~p~Il~ID   91 (337)
                      ..|+ .+||.||||+|||.||+++|+.++.+++.++++++.+.     ..|.+...+- ..-....+.+.....+|++||
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~D  128 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLD  128 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhc
Confidence            3455 58899999999999999999999999999999987532     3444322111 110111122356778999999


Q ss_pred             ccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCC--------------------
Q 019694           92 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--------------------  151 (337)
Q Consensus        92 EiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~--------------------  151 (337)
                      |||+...             .+.+.|++++++-....-.|  ......+.++|+|||--.                    
T Consensus       129 eieKa~~-------------~V~~~lLqild~G~ltd~~G--r~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~  193 (315)
T d1r6bx3         129 EIEKAHP-------------DVFNILLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM  193 (315)
T ss_dssp             TGGGSCH-------------HHHHHHHHHHHHSEEEETTT--EEEECTTEEEEEEECSSCC-----------------CH
T ss_pred             ccccccc-------------hHhhhhHHhhccceecCCCC--CccCccceEEEeccchhhHHHHhhhccchhhhhhHhHH
Confidence            9997421             24567778887432211111  123567889999999421                    


Q ss_pred             -----CCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          152 -----TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       152 -----~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                           .+.|.|+  +|+|..+.+  .+.++...|+...+
T Consensus       194 ~~l~~~f~pEfl--nRid~ii~f~~l~~~~~~~I~~~~l  230 (315)
T d1r6bx3         194 EEIKKIFTPEFR--NRLDNIIWFDHLSTDVIHQVVDKFI  230 (315)
T ss_dssp             HHHHHHSCHHHH--TTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHH--hhhhhhhcccchhhhHHHHHHHHHH
Confidence                 2566776  588887777  56677777765444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=4e-13  Score=125.43  Aligned_cols=160  Identities=15%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             hHHHHHhhhhcCCCCCCCc-EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC-----CCCChHHHH----H
Q 019694            4 LVVHITKNFMSLPNIKVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----R   70 (337)
Q Consensus         4 ~~~~i~k~~l~~~g~~~p~-giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~-----~~Ge~~~~i----r   70 (337)
                      +..++.+.+..+..-..|+ .+||+||+|+|||.+|+++|+.+   +.+++.++++++.+.     ..|.+...+    .
T Consensus        35 v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~  114 (315)
T d1qvra3          35 VADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG  114 (315)
T ss_dssp             HHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-------------
T ss_pred             HHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccC
Confidence            3444444333333334566 56788999999999999999998   678999999887542     233322111    1


Q ss_pred             HHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-
Q 019694           71 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-  149 (337)
Q Consensus        71 ~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-  149 (337)
                      ..+.+   .+++...+||+|||||+...             .+...|+.+++.-....  +........+.++|+|||- 
T Consensus       115 ~~l~~---~~~~~p~~Vvl~DEieK~~~-------------~v~~~ll~~l~~g~~~~--~~gr~v~~~~~i~i~tsnlG  176 (315)
T d1qvra3         115 GQLTE---AVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTD--SHGRTVDFRNTVIILTSNLG  176 (315)
T ss_dssp             -CHHH---HHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECC--SSSCCEECTTEEEEEECCTT
T ss_pred             ChHHH---HHHhCCCcEEEEehHhhcCH-------------HHHHHHHHHhccCceeC--CCCcEecCcceEEEEecccC
Confidence            12222   23556679999999998532             24566777877432221  1112345678899999994 


Q ss_pred             -------------------------CCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhc
Q 019694          150 -------------------------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF  183 (337)
Q Consensus       150 -------------------------~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~  183 (337)
                                               .+.+.|+|+.  |+|.++.+  .+.++..+|+...+
T Consensus       177 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEfln--Rid~Ii~F~~L~~~~~~~I~~~~l  235 (315)
T d1qvra3         177 SPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL  235 (315)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred             hHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHh--cCCeeeeccchhhhhhHHHHHHHH
Confidence                                     3568888885  89988766  66777777765443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=7.1e-12  Score=110.14  Aligned_cols=159  Identities=14%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             HHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCccccCCCCChHHHHHHHHHHHH--
Q 019694            6 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAA--   77 (337)
Q Consensus         6 ~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~--   77 (337)
                      ...+++++.....  | .+||+||||||||++++++|+++      ....+.++.+...+.      ..+...++...  
T Consensus        21 ~~~l~~~i~~~~~--~-~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~   91 (237)
T d1sxjd2          21 VTVLKKTLKSANL--P-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI------SIVREKVKNFARL   91 (237)
T ss_dssp             HHHHHHHTTCTTC--C-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH------HHHTTHHHHHHHS
T ss_pred             HHHHHHHHHcCCC--C-eEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccc------hHHHHHHHHHhhh
Confidence            4456666654332  3 38999999999999999999986      455666666543221      11111111110  


Q ss_pred             ----------HHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEe
Q 019694           78 ----------DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG  147 (337)
Q Consensus        78 ----------~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TT  147 (337)
                                +........||||||+|.+....             ...+..++.             .......+|.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~-------------~~~l~~~~~-------------~~~~~~~~i~~~  145 (237)
T d1sxjd2          92 TVSKPSKHDLENYPCPPYKIIILDEADSMTADA-------------QSALRRTME-------------TYSGVTRFCLIC  145 (237)
T ss_dssp             CCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-------------HHHHHHHHH-------------HTTTTEEEEEEE
T ss_pred             hhhhhhHHHHhhccccCceEEEEecccccCHHH-------------HHHHhhccc-------------cccccccccccc
Confidence                      01113344599999999774321             112222222             223556788899


Q ss_pred             CCCCCCcchhccCCCceEEEeC--CCHHHHHHHHHHhccCCCC--CHHHHHHHhcCCCc
Q 019694          148 NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPG  202 (337)
Q Consensus       148 N~~~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~~~~l--~~~~la~l~~gf~g  202 (337)
                      |..+.+.+++..  |+. .+.+  |+.++..++++.++...++  +.+.+..++....|
T Consensus       146 ~~~~~~~~~l~s--r~~-~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g  201 (237)
T d1sxjd2         146 NYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG  201 (237)
T ss_dssp             SCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred             cccccccccccc--hhh-hhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC
Confidence            999999999886  664 3455  9999999999998876654  55666666555433

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.31  E-value=3.8e-11  Score=106.38  Aligned_cols=152  Identities=11%  Similarity=0.069  Sum_probs=88.7

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC----CCcEEecCCccc----------------cCCCCChH
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELE----------------SGNAGEPA   66 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~----~~~i~vs~s~l~----------------~~~~Ge~~   66 (337)
                      +.+..++..++ ..|.++||+||||||||++++++++.+.    ..++.+++....                ....+...
T Consensus        30 ~~l~~~l~~~~-~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (276)
T d1fnna2          30 ILLGNWLRNPG-HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSR  108 (276)
T ss_dssp             HHHHHHHHSTT-SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCH
T ss_pred             HHHHHHHhCCC-CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccch
Confidence            34444444555 4678999999999999999999999874    445555544321                11223332


Q ss_pred             HHHHHHHHHHHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEE
Q 019694           67 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT  146 (337)
Q Consensus        67 ~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~T  146 (337)
                      ..+...+...  ......+.++++|++|.+....             ...+..++.         ........++.+|++
T Consensus       109 ~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~-------------~~~~~~~~~---------~~~~~~~~~~~~i~~  164 (276)
T d1fnna2         109 DEFLALLVEH--LRERDLYMFLVLDDAFNLAPDI-------------LSTFIRLGQ---------EADKLGAFRIALVIV  164 (276)
T ss_dssp             HHHHHHHHHH--HHHTTCCEEEEEETGGGSCHHH-------------HHHHHHHTT---------CHHHHSSCCEEEEEE
T ss_pred             hHHHHHHHHH--HhhcccccccchhHHHHhhhhh-------------hhhHHHHHh---------ccccccccceEEeec
Confidence            2222222221  2235577888999998653211             011111111         111234567889999


Q ss_pred             eCCC---CCCcchhccCCCceEEEeC--CCHHHHHHHHHHhcc
Q 019694          147 GNDF---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR  184 (337)
Q Consensus       147 TN~~---~~ld~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~  184 (337)
                      +|..   +.+++++.++..... +.+  |+.+++.+|++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~-i~~~~~~~~e~~~il~~r~~  206 (276)
T d1fnna2         165 GHNDAVLNNLDPSTRGIMGKYV-IRFSPYTKDQIFDILLDRAK  206 (276)
T ss_dssp             ESSTHHHHTSCHHHHHHHTTCE-EECCCCBHHHHHHHHHHHHH
T ss_pred             CCchhhhhhcchhhhhhhcchh-ccccchhHHHHHHHHHHHHH
Confidence            9974   467787765333232 444  899999999876553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.28  E-value=7.7e-12  Score=111.61  Aligned_cols=161  Identities=11%  Similarity=0.104  Sum_probs=91.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC---------CCcEEecCCccc----------------cCCCCChHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELE----------------SGNAGEPAKLIRQRYRE   75 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~---------~~~i~vs~s~l~----------------~~~~Ge~~~~ir~~f~~   75 (337)
                      +..++||||||||||++++++++++.         ..+..++.....                ....|.....+...+..
T Consensus        46 ~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  125 (287)
T d1w5sa2          46 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD  125 (287)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred             ceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHH
Confidence            34577899999999999999999863         223333333221                11234443333333333


Q ss_pred             HHHHHHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCc-
Q 019694           76 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY-  154 (337)
Q Consensus        76 A~~~~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld-  154 (337)
                      .  .-....+.++++||+|.+.......  .     .+...+..+.+        ..+......++.+|+.+|..+..+ 
T Consensus       126 ~--~~~~~~~~~~iide~d~l~~~~~~~--~-----~~~~~l~~l~~--------~l~~~~~~~~~~~i~i~~~~~~~~~  188 (287)
T d1w5sa2         126 N--LYVENHYLLVILDEFQSMLSSPRIA--A-----EDLYTLLRVHE--------EIPSRDGVNRIGFLLVASDVRALSY  188 (287)
T ss_dssp             H--HHHHTCEEEEEEESTHHHHSCTTSC--H-----HHHHHHHTHHH--------HSCCTTSCCBEEEEEEEEETHHHHH
T ss_pred             H--HHhccCccccceeEEEEeccccccc--h-----hHHHHHHHHHH--------hcchhhcccceeEEeecccHHHHHH
Confidence            3  1136678899999999886544311  1     11112222211        011113446667888877665433 


Q ss_pred             -----chhccCCCceEEEeC--CCHHHHHHHHHHhcc----CCCCCHH---HHHHHhcCC
Q 019694          155 -----APLIRDGRMEKFYWA--PTREDRIGVCKGIFR----NDNVADD---DIVKLVDTF  200 (337)
Q Consensus       155 -----~aLlR~gR~d~~i~~--P~~~~R~~Il~~~~~----~~~l~~~---~la~l~~gf  200 (337)
                           +++.+  |+...+.+  |+.++..+|++....    ...++.+   .+++++..+
T Consensus       189 ~~~~~~~~~~--r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~  246 (287)
T d1w5sa2         189 MREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGED  246 (287)
T ss_dssp             HHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGG
T ss_pred             HHhhccchhc--ccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhcc
Confidence                 44443  77777777  899999999876653    3456654   444455443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=5e-11  Score=115.85  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc-cCCCCCh-HHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREA   76 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~-~~~~Ge~-~~~ir~~f~~A   76 (337)
                      .|++|||.||||||||.||+.+|+.+++||+.++++.+. .+|+|+. +..++.++..|
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DVesii~~L~~~a  106 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA  106 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecchhHHHHHHHHHH
Confidence            588999999999999999999999999999999999984 5688874 34455544433

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3e-12  Score=111.30  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCccccC--CCCChHHHHHHHHHHHHHHHHhc-Cc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG--NAGEPAKLIRQRYREAADIIKKG-KM   85 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~~--~~Ge~~~~ir~~f~~A~~~~~~~-~p   85 (337)
                      +....++|+||||+|||++++.+|...          +..++.++.+.+.++  |.|+-+..+..++.++    ... ..
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~----~~~~~~  116 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL----AKQEGN  116 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH----HHSTTT
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHH----hcCCCc
Confidence            345578999999999999999999854          467899999998754  4466666677777665    544 47


Q ss_pred             eEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCC-----CCCcchhccC
Q 019694           86 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRD  160 (337)
Q Consensus        86 ~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~-----~~ld~aLlR~  160 (337)
                      .||||||+..+.+..+..... ....++.-.|    .               ++.+.+|+||...     -.-|++|.| 
T Consensus       117 iILfIDeih~l~~~g~~~g~~-d~~~~Lkp~L----~---------------rg~l~~IgatT~eey~~~~e~d~aL~r-  175 (195)
T d1jbka_         117 VILFIDELHTMVGAGKADGAM-DAGNMLKPAL----A---------------RGELHCVGATTLDEYRQYIEKDAALER-  175 (195)
T ss_dssp             EEEEEETGGGGTT------CC-CCHHHHHHHH----H---------------TTSCCEEEEECHHHHHHHTTTCHHHHT-
T ss_pred             EEEEcchHHHHhcCCCCCCcc-cHHHHHHHHH----h---------------CCCceEEecCCHHHHHHHHHcCHHHHh-
Confidence            899999999987543211111 1112222222    2               4667788887632     245999998 


Q ss_pred             CCceEEEeC-CCHHHHHHHH
Q 019694          161 GRMEKFYWA-PTREDRIGVC  179 (337)
Q Consensus       161 gR~d~~i~~-P~~~~R~~Il  179 (337)
                       ||.++.-- |+.++-..|+
T Consensus       176 -rF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         176 -RFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             -TEEEEECCCCCHHHHHTTC
T ss_pred             -cCCEeecCCCCHHHHHHHh
Confidence             88885544 9998877664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.20  E-value=8.8e-12  Score=109.80  Aligned_cols=169  Identities=15%  Similarity=0.134  Sum_probs=95.7

Q ss_pred             hhHHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHH
Q 019694            3 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADI   79 (337)
Q Consensus         3 k~~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~   79 (337)
                      +.+...++.+.+.++-.. ..++||||||||||+|++|+++++   +..++.++..++.......   ..........+ 
T Consensus        19 ~~a~~~~~~~~~~~~~~~-n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-   93 (213)
T d1l8qa2          19 RLAYEVVKEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH---LKKGTINEFRN-   93 (213)
T ss_dssp             HHHHHHHHHHHHTTTTSC-SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH---HHHTCHHHHHH-
T ss_pred             HHHHHHHHHHHhCcCCCC-CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHH---HHccchhhHHH-
Confidence            445666777776665432 248999999999999999999986   4566666665443211100   00000000100 


Q ss_pred             HHhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-CCCC---cc
Q 019694           80 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YA  155 (337)
Q Consensus        80 ~~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-~~~l---d~  155 (337)
                       .-....+|+|||||.+.++..           ....|..+++        .    ....+..+|+|++. |..+   .+
T Consensus        94 -~~~~~dll~iDDi~~i~~~~~-----------~~~~lf~lin--------~----~~~~~~~iiits~~~p~~l~~~~~  149 (213)
T d1l8qa2          94 -MYKSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN--------T----LYLLEKQIILASDRHPQKLDGVSD  149 (213)
T ss_dssp             -HHHTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH--------H----HHHTTCEEEEEESSCGGGCTTSCH
T ss_pred             -HHhhccchhhhhhhhhcCchH-----------HHHHHHHHHH--------H----HhhccceEEEecCCcchhccccch
Confidence             122457999999998865422           1222333333        0    11233356666654 4333   45


Q ss_pred             hhccCCCceEEEeC-CCHHHHHHHHHHhccCCCC--CHHHHHHHhcCC
Q 019694          156 PLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTF  200 (337)
Q Consensus       156 aLlR~gR~d~~i~~-P~~~~R~~Il~~~~~~~~l--~~~~la~l~~gf  200 (337)
                      .|..+-+--..+.+ |+.++|.+|++.++...++  +.+.+.-+.+.+
T Consensus       150 dL~SRL~~g~~~~i~p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~  197 (213)
T d1l8qa2         150 RLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT  197 (213)
T ss_dssp             HHHHHHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred             HHHHHhhCceEEEECCCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence            56542233345555 8889999999988866554  556666555544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=5.4e-11  Score=113.68  Aligned_cols=167  Identities=20%  Similarity=0.292  Sum_probs=98.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh----------CCCcEEecCCcccc--CCCCChHHHHHHHHHHHHHHHHhc-Cce
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKG-KMC   86 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l----------~~~~i~vs~s~l~~--~~~Ge~~~~ir~~f~~A~~~~~~~-~p~   86 (337)
                      ....++|.||||+|||.+++.+|...          +..++.++.+.|..  +|.|+-+..+..+..++    ... .+.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~----~~~~~~~  117 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGEV  117 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSSE
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHh----ccCCCce
Confidence            34456899999999999999998753          45689999999975  46788888887777776    554 478


Q ss_pred             EEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCC-----CCCCcchhccCC
Q 019694           87 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-----FSTLYAPLIRDG  161 (337)
Q Consensus        87 Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~-----~~~ld~aLlR~g  161 (337)
                      ||||||+..+++..+..... ....++.-.|                   .++.+-+|+||..     .+. |+||.|  
T Consensus       118 ilfide~h~l~~~g~~~g~~-d~a~~Lkp~L-------------------~rg~~~~I~~tT~~ey~~~e~-d~al~r--  174 (387)
T d1qvra2         118 ILFIDELHTVVGAGKAEGAV-DAGNMLKPAL-------------------ARGELRLIGATTLDEYREIEK-DPALER--  174 (387)
T ss_dssp             EEEECCC--------------------HHHH-------------------HTTCCCEEEEECHHHHHHHTT-CTTTCS--
T ss_pred             EEEeccHHHHhcCCCCCCcc-cHHHHHHHHH-------------------hCCCcceeeecCHHHHHHhcc-cHHHHH--
Confidence            99999999987543211111 1111222111                   2466788888863     333 899998  


Q ss_pred             CceEEEeC-CCHHHHHHHHHHhcc------CCCCCHHHHH---HHhc------CCCchhhHhHHHHHh
Q 019694          162 RMEKFYWA-PTREDRIGVCKGIFR------NDNVADDDIV---KLVD------TFPGQSIDFFGALRA  213 (337)
Q Consensus       162 R~d~~i~~-P~~~~R~~Il~~~~~------~~~l~~~~la---~l~~------gf~gadl~~~~alra  213 (337)
                      ||..+.-- |+.++-..|++.+..      .-.++.+.+.   .+++      .||+-.|+++....+
T Consensus       175 rF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a  242 (387)
T d1qvra2         175 RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA  242 (387)
T ss_dssp             CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred             hcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHH
Confidence            88886555 999999999776542      2234554443   3332      567778887654444

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.19  E-value=2.1e-12  Score=115.38  Aligned_cols=48  Identities=17%  Similarity=0.259  Sum_probs=43.0

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccccCCC
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA   62 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~~~~~   62 (337)
                      ..+...|+|||||||||||||++|+++|.+++.+++.++++++.....
T Consensus        26 ~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~   73 (273)
T d1gvnb_          26 KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP   73 (273)
T ss_dssp             CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhc
Confidence            457788999999999999999999999999999999999988765443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.96  E-value=2.6e-10  Score=106.00  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             CceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCcc-ccCCCccccCCCCCceEEEEeCCC-CCCcchhccCC
Q 019694           84 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDF-STLYAPLIRDG  161 (337)
Q Consensus        84 ~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~-~~~~g~~~~~~~~~V~vI~TTN~~-~~ld~aLlR~g  161 (337)
                      ...|+|||||..+-.             .+.+.|++.+++.+. +.-.|. ......+..+|+|+|.. ..++++++.  
T Consensus       127 ~~gvl~iDEi~~~~~-------------~~~~aLl~~me~~~v~i~r~g~-~~~~p~~f~liaa~Np~~~~l~~~llD--  190 (333)
T d1g8pa_         127 NRGYLYIDECNLLED-------------HIVDLLLDVAQSGENVVERDGL-SIRHPARFVLVGSGNPEEGDLRPQLLD--  190 (333)
T ss_dssp             TTEEEEETTGGGSCH-------------HHHHHHHHHHHHSEEEECCTTC-CEEEECCEEEEEEECSCSCCCCHHHHT--
T ss_pred             cccEeecccHHHHHH-------------HHHHHHhhhhcCCeEEecccCc-eecCCCCEEEEEecCccccccccchhh--
Confidence            457999999986422             234455566653221 111222 11223456788888864 468999987  


Q ss_pred             CceEEEeC---CCHHHHHHHHHH
Q 019694          162 RMEKFYWA---PTREDRIGVCKG  181 (337)
Q Consensus       162 R~d~~i~~---P~~~~R~~Il~~  181 (337)
                      ||+..+++   .+.+.+.++...
T Consensus       191 Rf~~~i~v~~~~~~~~~~~~~~~  213 (333)
T d1g8pa_         191 RFGLSVEVLSPRDVETRVEVIRR  213 (333)
T ss_dssp             TCSEEEECCCCCSHHHHHHHHHH
T ss_pred             hhcceeeccCcchhhHHHHHHHh
Confidence            89999998   456777777544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=2.5e-09  Score=92.70  Aligned_cols=126  Identities=9%  Similarity=-0.031  Sum_probs=83.6

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC------CcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------NPIMMSAGELESGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~------~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      +.++++....   .+..+|||||||||||++|..+++....      .++.+...   ++.+  .-..||++.+.+...-
T Consensus         4 ~~l~~~i~~~---~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~---~~~I--~Id~IR~i~~~~~~~~   75 (198)
T d2gnoa2           4 ETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENI--GIDDIRTIKDFLNYSP   75 (198)
T ss_dssp             HHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCB--CHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC---cCCC--CHHHHHHHHHHHhhCc
Confidence            3455555533   4669999999999999999999987632      36666543   1111  2345677666651111


Q ss_pred             HhcCceEEEecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccC
Q 019694           81 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD  160 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~  160 (337)
                      ..+..-|++|||+|.+-.             .....|+..++             ++..++.+|.+||+++.|.|+++. 
T Consensus        76 ~~~~~KviIId~ad~l~~-------------~aqNaLLK~LE-------------EPp~~t~fiLit~~~~~ll~TI~S-  128 (198)
T d2gnoa2          76 ELYTRKYVIVHDCERMTQ-------------QAANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS-  128 (198)
T ss_dssp             SSSSSEEEEETTGGGBCH-------------HHHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred             ccCCCEEEEEeCccccch-------------hhhhHHHHHHh-------------CCCCCceeeeccCChhhCHHHHhc-
Confidence            145667999999997632             12234445555             556788999999999999999986 


Q ss_pred             CCceEEEeC
Q 019694          161 GRMEKFYWA  169 (337)
Q Consensus       161 gR~d~~i~~  169 (337)
                       |+- .+.+
T Consensus       129 -RC~-~i~~  135 (198)
T d2gnoa2         129 -RVF-RVVV  135 (198)
T ss_dssp             -TSE-EEEC
T ss_pred             -ceE-EEeC
Confidence             553 3455

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.71  E-value=6.6e-09  Score=93.01  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=73.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhC---CCcEEecCCccccCCCCChHHHHHHHHHHH-----------HHHHHhcCceEEE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMCCLM   89 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~Il~   89 (337)
                      |||+||+|||||++|+++.....   .+++.+++..+...      .....+|...           ..++.......||
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~   99 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD------IFEAELFGYEKGAFTGAVSSKEGFFELADGGTLF   99 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH------HHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEE
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhc------ccHHHhcCcccCCcCCcccccCCHHHccCCCEEE
Confidence            89999999999999999987653   35777777643211      1111222110           0011223567899


Q ss_pred             ecccccccccCCCCcccchhhHhHHHHHHhhhCCCccccCCCccccCCCCCceEEEEeCCCCCCcchhccCCCce-----
Q 019694           90 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-----  164 (337)
Q Consensus        90 IDEiD~l~~~~~~~~~~~~~~~~v~~~Ll~lld~~~~~~~~g~~~~~~~~~V~vI~TTN~~~~ld~aLlR~gR~d-----  164 (337)
                      |||||.+..             ..+..|++++++.+...+++.  .....++-+|+|||..  + ..+...|+|+     
T Consensus       100 l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~~~~--~~~~~~~RlI~~s~~~--l-~~l~~~~~f~~~L~~  161 (247)
T d1ny5a2         100 LDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN--I-KELVKEGKFREDLYY  161 (247)
T ss_dssp             EESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC--H-HHHHHTTSSCHHHHH
T ss_pred             EeChHhCCH-------------HHHHHHHHHHHhCCEEECCCC--CceecCeEEEEecCCC--H-HHHHHcCCCcHHHHh
Confidence            999998632             123344555554333333332  1223467788988863  1 2344555554     


Q ss_pred             ----EEEeCCCHHHHH
Q 019694          165 ----KFYWAPTREDRI  176 (337)
Q Consensus       165 ----~~i~~P~~~~R~  176 (337)
                          ..+.+|...+|.
T Consensus       162 ~l~~~~i~lPpLreR~  177 (247)
T d1ny5a2         162 RLGVIEIEIPPLRERK  177 (247)
T ss_dssp             HHTTEEEECCCGGGCH
T ss_pred             hcCeeeecCCChhhch
Confidence                256778876653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.71  E-value=1.9e-07  Score=81.87  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCccc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE   58 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l~   58 (337)
                      ..+.++|+||+|+|||+|++.++++++..+..++.....
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~   66 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE   66 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGT
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEecccc
Confidence            356899999999999999999999999888777665443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.63  E-value=7.4e-08  Score=79.91  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      |+|.||||+|||||+++++..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            8999999999999999999988653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=3.4e-07  Score=75.24  Aligned_cols=37  Identities=27%  Similarity=0.314  Sum_probs=33.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      ++.|+|.|||||||||+|+++++++|.+++.++...+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            5789999999999999999999999999999887543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.33  E-value=1.3e-07  Score=77.93  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      .+|-|+|.|||||||||||+++|+.++.+++......+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~   43 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREF   43 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHH
Confidence            36889999999999999999999999998886655443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.29  E-value=4.2e-06  Score=75.25  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .+.|.|||++|+|||+||+.++++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4678899999999999999998873

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=1.7e-07  Score=75.44  Aligned_cols=31  Identities=16%  Similarity=0.067  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |.|.|.|||||||||+|+.+|++++++++..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~   33 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS   33 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            4588899999999999999999999988744

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.22  E-value=2.8e-07  Score=75.40  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      .|+. +|.|||||||||+|+.+|+++|.+++.+
T Consensus         4 ~~~I-~i~G~pGsGKTTia~~La~~l~~~~i~~   35 (173)
T d1rkba_           4 LPNI-LLTGTPGVGKTTLGKELASKSGLKYINV   35 (173)
T ss_dssp             CCCE-EEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence            3444 4889999999999999999999988753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.19  E-value=4e-07  Score=75.33  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      |+.||+ |+||+||||+++.+|+.++++|+..+
T Consensus         2 p~Ivli-G~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             CSEEEE-CSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            776766 99999999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.19  E-value=5.5e-07  Score=73.67  Aligned_cols=34  Identities=15%  Similarity=0.106  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      ++.|+|.||||+||||+|++++++++.+++.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~   36 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence            5789999999999999999999999998887654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=7.1e-07  Score=73.09  Aligned_cols=35  Identities=20%  Similarity=0.084  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      ..++.++|.|||||||||+|+++++.++.+++...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d   38 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD   38 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence            45788999999999999999999999998776543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.07  E-value=9.4e-07  Score=71.82  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=26.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .+.|+|.||||+||||+|+.++++++..++
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            367999999999999999999999987644

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.07  E-value=1e-06  Score=74.33  Aligned_cols=33  Identities=27%  Similarity=0.519  Sum_probs=29.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ..|+.|+|.||||+||||+|+.+|+++|+..+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            457899999999999999999999999875543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.04  E-value=9.6e-07  Score=72.92  Aligned_cols=32  Identities=16%  Similarity=0.072  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      |.|.|.|+||+||||+++.+|+.+|++|+..+
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            35788899999999999999999999998653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.03  E-value=1.3e-06  Score=71.53  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      +.-|+|.||||+||||+|+.+|++++..
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~~   32 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDGF   32 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence            3449999999999999999999998753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.02  E-value=1.3e-06  Score=72.53  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      +.|+|.|+||+||||+++.+|+++|++|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            4477889999999999999999999998854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.96  E-value=1.1e-06  Score=74.09  Aligned_cols=30  Identities=40%  Similarity=0.593  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |..|+|.|||||||||+|+.+|+++|+..+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i   32 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAHI   32 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            556889999999999999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.6e-06  Score=71.68  Aligned_cols=30  Identities=37%  Similarity=0.744  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |..|+|.||||+||||+|+.||+++|+..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            678999999999999999999999987554

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.8e-06  Score=70.62  Aligned_cols=24  Identities=17%  Similarity=0.059  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      |.|+|+||||||||+|++++++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999887

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.91  E-value=2.5e-06  Score=72.10  Aligned_cols=32  Identities=38%  Similarity=0.616  Sum_probs=28.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      +.|+.|+|.||||+||||+|+.+|+++|+..+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~i   37 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL   37 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            35788999999999999999999999987554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.90  E-value=3e-06  Score=70.24  Aligned_cols=29  Identities=38%  Similarity=0.447  Sum_probs=26.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |+|.||||+||||+|+.+|+++|+.++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~   31 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST   31 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceech
Confidence            78999999999999999999999876643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=5.7e-06  Score=69.17  Aligned_cols=37  Identities=22%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      +.|..|+|.|+||+||||+|+.++...++.  .++..++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~--~i~~D~~   48 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL   48 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCE--EEEHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCE--EEchHHH
Confidence            568899999999999999999999888754  4444443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.89  E-value=1.9e-06  Score=70.39  Aligned_cols=28  Identities=11%  Similarity=0.044  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .+..|+|+|+||+||||+|+++|+.++.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3455889999999999999999999854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=5.5e-06  Score=69.81  Aligned_cols=35  Identities=14%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG   55 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s   55 (337)
                      |..|+|+|.||+||||+|+++|+.++   .+...++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            77899999999999999999998875   445555544

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=4.4e-06  Score=69.59  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |+|.||||+||||+|+.+|+++|...+.+
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            67889999999999999999998876644

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=5.6e-06  Score=70.39  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=27.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE   56 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~   56 (337)
                      .|.+.||||+||||+|+.||+++|+++  +|.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGd   36 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGA   36 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHH
Confidence            788999999999999999999998765  44443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.81  E-value=4.9e-06  Score=71.55  Aligned_cols=40  Identities=18%  Similarity=0.089  Sum_probs=32.3

Q ss_pred             HHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694            7 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus         7 ~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      ...++++  .|.+....++|||||+||||++|.++++-++-.
T Consensus        41 ~~l~~~l--~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          41 GALKSFL--KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             HHHHHHH--HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             HHHHHHH--cCCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            3445555  466777899999999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=6.1e-06  Score=69.55  Aligned_cols=30  Identities=27%  Similarity=0.501  Sum_probs=26.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      ..|+|.||||+||||+|+.+|+++|+..+.
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g~~~is   38 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            467788999999999999999999876654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.4e-06  Score=71.26  Aligned_cols=34  Identities=12%  Similarity=-0.037  Sum_probs=27.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      ..|. .+..|+|+|+||+||||+|+.+|.+++..+
T Consensus        14 ~~~~-~g~vI~L~G~pGSGKTTiAk~La~~l~~~~   47 (195)
T d1x6va3          14 RGGF-RGCTVWLTGLSGAGKTTVSMALEEYLVCHG   47 (195)
T ss_dssp             SCSC-CCEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCC-CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            3344 366788999999999999999999986543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.79  E-value=2.7e-05  Score=69.78  Aligned_cols=85  Identities=16%  Similarity=0.160  Sum_probs=58.8

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~----~~Ge--------~~~~ir~~f~~A~~~~   80 (337)
                      .|++..+...++||||||||++|..++..   .|..++.++...-.+.    -.|-        ......+.++.+..++
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~  131 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  131 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHH
Confidence            47788899999999999999999988654   4666777766532111    0010        0112345666676777


Q ss_pred             HhcCceEEEecccccccccC
Q 019694           81 KKGKMCCLMINDLDAGAGRM  100 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~~  100 (337)
                      +...+.+|++|=+-++.++.
T Consensus       132 ~~~~~~liIiDSi~al~~r~  151 (268)
T d1xp8a1         132 RSGAIDVVVVDSVAALTPRA  151 (268)
T ss_dssp             TTTCCSEEEEECTTTCCCST
T ss_pred             hcCCCcEEEEecccccccHH
Confidence            78889999999998887543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.78  E-value=7.1e-06  Score=68.80  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=24.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      |+|.||||+||||+|+.+|+++|+.++.
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~~i~   33 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVCHLA   33 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            4467999999999999999999876554

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.76  E-value=7e-06  Score=68.46  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |+|.||||+||||+|+.+|+++|+..+.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~   31 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHIST   31 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence            77899999999999999999999876653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.76  E-value=4.6e-05  Score=65.65  Aligned_cols=83  Identities=17%  Similarity=0.082  Sum_probs=53.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccc--------cC--------------CCC--ChHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE--------SG--------------NAG--EPAKL   68 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~--------~~--------------~~G--e~~~~   68 (337)
                      .|++....++|+||||+|||++|..+|...   +..++.++..+-.        +.              ...  .....
T Consensus        21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1tf7a2          21 GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG  100 (242)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence            468888899999999999999999998875   4455555443200        00              000  00111


Q ss_pred             HHHHHHHHHHHHHhcCceEEEecccccccc
Q 019694           69 IRQRYREAADIIKKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        69 ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+......+....|.+++||.++.+..
T Consensus       101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~  130 (242)
T d1tf7a2         101 LEDHLQIIKSEINDFKPARIAIDSLSALAR  130 (242)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred             HHHHHHHHHHHHHhcCCceeeeecchhhhc
Confidence            223344444455788999999999987754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.74  E-value=6.9e-06  Score=68.52  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |+|.||||+||||+|+.+|+++|+..+.+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~~i~~   33 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT   33 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence            56779999999999999999998765544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.71  E-value=8.1e-06  Score=69.08  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      +..+.+ |.||||+||||+|+.+|+++|+.++
T Consensus         5 r~mrIi-liG~PGSGKtT~a~~La~~~g~~~i   35 (189)
T d2ak3a1           5 RLLRAA-IMGAPGSGKGTVSSRITKHFELKHL   35 (189)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHHHBCCEEE
T ss_pred             cceeEE-EECCCCCCHHHHHHHHHHHHCCeEE
Confidence            444455 5699999999999999999987654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.6e-06  Score=67.59  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      |+|.||||+||||+|+.+|+++++.++..
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~~~i~~   31 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceech
Confidence            67899999999999999999999876643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.67  E-value=1.3e-05  Score=68.39  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      -|.+.||||+||||+|+.||+++|++++
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            3567899999999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.66  E-value=1.6e-05  Score=63.52  Aligned_cols=36  Identities=22%  Similarity=0.146  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCCcc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL   57 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s~l   57 (337)
                      .+.|+|+||||+||||+|+.++++.. .+..++..++
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~   37 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY   37 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence            46789999999999999999877643 3555555443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=3e-05  Score=69.56  Aligned_cols=84  Identities=18%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccC-C---CCC--------hHHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG-N---AGE--------PAKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~-~---~Ge--------~~~~ir~~f~~A~~~~   80 (337)
                      .|++..+...|+||||+|||++|..++..   .|..++.++...-.+. +   .|-        ....+.+.++.+..++
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~  134 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            58888899999999999999999766554   4666677665542111 0   000        1123456777777788


Q ss_pred             HhcCceEEEeccccccccc
Q 019694           81 KKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~~   99 (337)
                      +...+.+|+||-+-++.++
T Consensus       135 ~~~~~~liIiDSi~al~~~  153 (269)
T d1mo6a1         135 RSGALDIVVIDSVAALVPR  153 (269)
T ss_dssp             HTTCEEEEEEECSTTCCCH
T ss_pred             hcCCCCEEEEecccccccH
Confidence            8889999999999888753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=4.1e-05  Score=68.35  Aligned_cols=83  Identities=16%  Similarity=0.181  Sum_probs=55.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccC----CCCC-h-------HHHHHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE-P-------AKLIRQRYREAADII   80 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~----~~Ge-~-------~~~ir~~f~~A~~~~   80 (337)
                      .|++..+.+.|+||||+|||++|-.++...   |..++.++...-.+.    ..|- .       ...+.+.++.+..++
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~  128 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  128 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHH
Confidence            467777899999999999999999876543   566666665432111    0011 0       012345666666677


Q ss_pred             HhcCceEEEecccccccc
Q 019694           81 KKGKMCCLMINDLDAGAG   98 (337)
Q Consensus        81 ~~~~p~Il~IDEiD~l~~   98 (337)
                      +...+.+|+||=+-++.+
T Consensus       129 ~~~~~~liViDSi~al~~  146 (263)
T d1u94a1         129 RSGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HHTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEECcccccc
Confidence            788899999998887764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.60  E-value=7.7e-05  Score=64.05  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=35.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh----CCCcEEecCCccccC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG   60 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l----~~~~i~vs~s~l~~~   60 (337)
                      ..+..|+|+|.||+||||+|+++++.+    +.+++.+++..+...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~   67 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG   67 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHh
Confidence            456789999999999999999998765    678888888776543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.58  E-value=0.00028  Score=59.53  Aligned_cols=84  Identities=11%  Similarity=0.050  Sum_probs=51.9

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHH----HhCCCcEEecCCccc--------------------------------c
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFA----KMGINPIMMSAGELE--------------------------------S   59 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~----~l~~~~i~vs~s~l~--------------------------------~   59 (337)
                      .|+++...++|+|+||+|||+||..+|.    ..+..++.++..+-.                                .
T Consensus        21 GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1tf7a1          21 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPE  100 (242)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSS
T ss_pred             CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchh
Confidence            4788889999999999999999976543    234455555443200                                0


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhcCceEEEeccccccccc
Q 019694           60 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR   99 (337)
Q Consensus        60 ~~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD~l~~~   99 (337)
                      ...-........+.......++...|.+++||-++.+...
T Consensus       101 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~  140 (242)
T d1tf7a1         101 GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ  140 (242)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred             hhhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHh
Confidence            0000011122233444455557888999999999887643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.54  E-value=1.8e-05  Score=64.63  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |.|+|.||||+||||+++.+++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            67999999999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=4.6e-05  Score=63.02  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=31.0

Q ss_pred             HHHHHhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694            5 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus         5 ~~~i~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +.++++..+.. ...-|..|.|.||+|+||||+|+.+++.++.
T Consensus         7 ~~~~~~~~~~~-~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_           7 IDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             HHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34455555443 2334888999999999999999999987653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00023  Score=61.34  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      -+.|..|+|.||+|+||||.+--+|..+   |..+..++...
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   47 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT   47 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            3568999999999999998766667554   55666666554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.38  E-value=0.00017  Score=61.96  Aligned_cols=37  Identities=14%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      .|+.++|.||+|+||||.+--+|..+   |..+..++...
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt   44 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT   44 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            57889999999999998766666654   55556665554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.37  E-value=0.00011  Score=63.55  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      +.|..|+|.||+|+||||.+--+|..+   +..+..++...
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   50 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV   50 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence            578999999999999998666555543   45555555543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.29  E-value=4.4e-05  Score=62.54  Aligned_cols=26  Identities=27%  Similarity=0.028  Sum_probs=23.7

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |.|+|.|+||+||||+++.+++.++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999998854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=6.6e-05  Score=60.51  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=25.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      .+.++|+||+|||||++.+++++   |..+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~   37 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK   37 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence            58899999999999999999875   55554443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.0002  Score=61.86  Aligned_cols=38  Identities=21%  Similarity=0.458  Sum_probs=27.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      ..|..|+|.||+|+||||.+--+|..+   +..+..++...
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt   49 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT   49 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence            578999999999999998766666544   45555555443

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00045  Score=58.49  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|++.-+.++|+||||||||+++..++..
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            46888889999999999999999988654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.21  E-value=0.00026  Score=60.75  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE   56 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~   56 (337)
                      |-.+.++.++|.||+|+||||.+--+|..+   |..+..++...
T Consensus         5 p~~~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt   48 (207)
T d1ls1a2           5 PVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT   48 (207)
T ss_dssp             CCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            445567778999999999998777666654   55666665543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00054  Score=60.07  Aligned_cols=28  Identities=32%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++-.-+.|.||.|+|||||+++++..+.
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3445689999999999999999987653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00018  Score=59.83  Aligned_cols=32  Identities=38%  Similarity=0.556  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      +.|..|.|+|++|+||||+|+.+ ++.|++++.
T Consensus         1 k~p~IIgitG~~gSGKstva~~l-~~~g~~~~~   32 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALL-RSWGYPVLD   32 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence            46889999999999999999998 668887664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00032  Score=63.16  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh------CCCcEEecCCcc
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGEL   57 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l------~~~~i~vs~s~l   57 (337)
                      .+-+.|..|.|.|++|+||||++..|...+      ...+..+|..++
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            456779999999999999999999887664      334556666555

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.05  E-value=0.00097  Score=59.23  Aligned_cols=31  Identities=13%  Similarity=0.147  Sum_probs=27.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +.+....+.|+|||+||||+++.+|++-+|.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4456788999999999999999999999865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00017  Score=61.07  Aligned_cols=28  Identities=36%  Similarity=0.772  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      |..|.|.||+|+||||+|+.+++.++..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            7889999999999999999999998754

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00047  Score=62.68  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             HhhhhcCCCCCCCcEEEEEcCCCchHHHHHHHHHHHhC-----CCcEEecCCccc
Q 019694            9 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELE   58 (337)
Q Consensus         9 ~k~~l~~~g~~~p~giLL~GpPGtGKT~lA~aiA~~l~-----~~~i~vs~s~l~   58 (337)
                      ...||...+.+.|..|.+.|++|+||||+|+.++..+.     ..+..++...+.
T Consensus        68 ~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             HHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            34456667788999999999999999999999999874     345566665553

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.92  E-value=0.0033  Score=55.23  Aligned_cols=28  Identities=25%  Similarity=0.282  Sum_probs=23.1

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++.-.-+.|.||+|+|||||++.++.-.
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3444568999999999999999997654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00023  Score=58.58  Aligned_cols=30  Identities=20%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|+++-..++|+||||+|||++|..+|...
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            477888899999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00041  Score=59.22  Aligned_cols=30  Identities=17%  Similarity=0.140  Sum_probs=26.2

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|+++-..++|+||||||||++|..+|...
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            477777889999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.76  E-value=0.0017  Score=56.71  Aligned_cols=40  Identities=18%  Similarity=0.098  Sum_probs=30.5

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH----hCCCcEEecCC
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG   55 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~----l~~~~i~vs~s   55 (337)
                      .|+.+-.-++|.|+||+|||+++..+|..    .|.++..++..
T Consensus        30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            36777778899999999999998887653    36676666543

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00061  Score=56.99  Aligned_cols=27  Identities=22%  Similarity=0.141  Sum_probs=23.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      |.|.||+|+|||++++.++++.+..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~   29 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFG   29 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcee
Confidence            779999999999999999999875543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.75  E-value=0.0013  Score=57.96  Aligned_cols=28  Identities=25%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++-.-+.|.||.|+|||||++.++...
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3444668999999999999999997654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0054  Score=53.09  Aligned_cols=23  Identities=26%  Similarity=0.049  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .+.++|+||..+|||++.|+++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            36899999999999999999865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00072  Score=56.22  Aligned_cols=26  Identities=31%  Similarity=0.278  Sum_probs=23.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      |+|.||+|+|||+|++.++++....+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~   29 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcce
Confidence            78999999999999999999876543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.65  E-value=0.00045  Score=59.14  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|++.-..++|+||||+|||+++-.+|.+.
T Consensus        31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            467778889999999999999999888764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.60  E-value=0.00059  Score=55.33  Aligned_cols=32  Identities=22%  Similarity=0.109  Sum_probs=25.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      +.+.+.|++|+|||||+..++.++   |..+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            467899999999999999998865   55555554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.00059  Score=56.32  Aligned_cols=26  Identities=15%  Similarity=0.140  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      -+.|.|.||+|+|||++++.+.++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36789999999999999999998874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.55  E-value=0.00057  Score=62.43  Aligned_cols=69  Identities=12%  Similarity=0.063  Sum_probs=44.1

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEe-cCCccccC-------CCCChHHHHHHHHHHHHHHHHhcCceEEEe
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELESG-------NAGEPAKLIRQRYREAADIIKKGKMCCLMI   90 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~v-s~s~l~~~-------~~Ge~~~~ir~~f~~A~~~~~~~~p~Il~I   90 (337)
                      .+.||+.||+|+|||++.++++....-  .++.+ +..++.-.       ..+...-...++++.+    -+..|..|++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~----lR~~pd~iiv  241 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSC----LRMRPDRIIL  241 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHH----TTSCCSEEEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHH----hccCCCcccC
Confidence            356999999999999999999987643  33433 22232110       0111111233455555    6789999999


Q ss_pred             ccc
Q 019694           91 NDL   93 (337)
Q Consensus        91 DEi   93 (337)
                      .|+
T Consensus       242 gEi  244 (323)
T d1g6oa_         242 GEL  244 (323)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            998

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.001  Score=54.60  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      .++.-.|+|.|+=|+|||+++|.+++.+|..-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~   61 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG   61 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence            34556789999999999999999999999863

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.30  E-value=0.0009  Score=56.43  Aligned_cols=30  Identities=13%  Similarity=0.128  Sum_probs=26.4

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      .|+++-..++|+|+||+|||++|..+|..+
T Consensus        29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          29 GGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357777889999999999999999998765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.21  E-value=0.0043  Score=57.95  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC---CCcEEecCC-ccccCCCCC---hHHHHHHHHHHHHHHHHhcCceEEEecccc
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG-ELESGNAGE---PAKLIRQRYREAADIIKKGKMCCLMINDLD   94 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~---~~~i~vs~s-~l~~~~~Ge---~~~~ir~~f~~A~~~~~~~~p~Il~IDEiD   94 (337)
                      ..||+.||+|+||||+..++.+++.   .+++.+..+ +..-.....   ... -..-|..+...+-+..|.||+|.||-
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~-~~~~~~~~l~~~lR~dPDvi~igEiR  237 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR-VDMTFARGLRAILRQDPDVVMVGEIR  237 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG-GTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCC-cCCCHHHHHHHHHhhcCCEEEecCcC
Confidence            3478999999999999999988774   344544222 211111100   000 01135555555578999999999995

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.16  E-value=0.026  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.018  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +.++|+||...|||++.|+++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4689999999999999998854

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.05  E-value=0.0019  Score=53.76  Aligned_cols=29  Identities=31%  Similarity=0.249  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      -+||||.|++|+|||++|-.+... |..++
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv   42 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLI   42 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            479999999999999999988765 76555

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.0022  Score=53.94  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEe
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMM   52 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~v   52 (337)
                      ..|.|+|++||||||+|+.+. ++|++++..
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vida   32 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDA   32 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEc
Confidence            467899999999999999885 688877643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.96  E-value=0.0015  Score=54.09  Aligned_cols=33  Identities=18%  Similarity=0.029  Sum_probs=28.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      .+.|..|.+.|+.|+||||+++.++++++...+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            356888999999999999999999999875433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.003  Score=53.24  Aligned_cols=29  Identities=41%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIM   51 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~   51 (337)
                      -.|.|+|++|+||||+|+.+ +++|++++.
T Consensus         4 ~iIgitG~igSGKStv~~~l-~~~G~~vid   32 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAF-ADLGINVID   32 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred             EEEEEECCCcCCHHHHHHHH-HHCCCcEEE
Confidence            36889999999999999987 478876553

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.78  E-value=0.002  Score=55.12  Aligned_cols=30  Identities=13%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs   53 (337)
                      +.|.|+|+.||||||+|+.+++++|+  ..++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~--~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSA--VKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCE--EECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCC--eEEc
Confidence            57899999999999999999998875  4444

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.76  E-value=0.0027  Score=49.85  Aligned_cols=21  Identities=14%  Similarity=-0.023  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|+||+|||+|.+.+...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0039  Score=53.04  Aligned_cols=30  Identities=27%  Similarity=0.186  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      ||-|.+-|+-|+||||+++.++++++-..+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            899999999999999999999999875433

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.67  E-value=0.0033  Score=51.92  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      -+||||.|++|.|||++|-++.+. |..++
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~li   43 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRLV   43 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            479999999999999999887765 65544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.005  Score=52.08  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.++|.||+|+|||+|.+.+.+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999998865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.65  E-value=0.0031  Score=53.35  Aligned_cols=30  Identities=17%  Similarity=0.106  Sum_probs=23.6

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC--CCcEEe
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG--INPIMM   52 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~--~~~i~v   52 (337)
                      .|++.||+|+|||||.+++.+++.  .....+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~iv   33 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV   33 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEE
Confidence            478999999999999999987653  334444

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0045  Score=51.08  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .|.|.|.||+|+|||+|++.+.++..
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            35689999999999999999988754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.65  E-value=0.0028  Score=52.79  Aligned_cols=29  Identities=21%  Similarity=0.030  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCcE
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINPI   50 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~i   50 (337)
                      -+||||.||+|+|||++|-.+... |..++
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lv   43 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFV   43 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCcee
Confidence            479999999999999999888654 66554

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0037  Score=57.59  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=16.7

Q ss_pred             cEEEEEcCCCchHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELV   41 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~ai   41 (337)
                      +-.+|+||||||||+++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            46889999999999887544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.32  E-value=0.0041  Score=55.68  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=28.2

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCcc
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL   57 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l   57 (337)
                      .++| .|.+.|++|+||||+++++.+.+   ++....++..++
T Consensus         2 ~k~p-IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           2 KKHP-IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             TTSC-EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCC-EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            3566 68999999999999999987765   567677777655

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0043  Score=53.79  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           16 PNIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        16 ~g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|+.+-...+|+|+||+|||+|+-.+|..
T Consensus        24 ~G~~pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          24 PNMVAGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            35555567789999999999999988775

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.26  E-value=0.0049  Score=48.10  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|+||+|||+|...+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.22  E-value=0.0096  Score=49.21  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      .|.|.|+.|+||||+++.+++.+   |.+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~   36 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            36788999999999999999876   667666543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0063  Score=51.46  Aligned_cols=32  Identities=19%  Similarity=0.263  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEec
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMS   53 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs   53 (337)
                      +-|.|.|+.|+||||+++.+++.+   |.+++.+.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            345566999999999999999876   56666553

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0056  Score=51.21  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +-|.+-|++|+||||+++.+++.+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            457788999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.011  Score=51.47  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      ..|+.|++.|.-|+||||++-++|..+   |..+..++..
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            358999999999999999988887765   7777777654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0067  Score=50.39  Aligned_cols=23  Identities=13%  Similarity=0.040  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |.|+|.|+||+|||+|..++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.015  Score=45.83  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|+||+|||+|..++..+
T Consensus         4 I~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.96  E-value=0.0067  Score=47.69  Aligned_cols=22  Identities=23%  Similarity=0.114  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      =|+|.|.||+|||+|.+++...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.78  E-value=0.0055  Score=49.06  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .=|+|.|+||+|||+|..++..
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3488999999999999998844

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.70  E-value=0.014  Score=47.18  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|.|.|.||+|||+|.+++...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.68  E-value=0.0084  Score=52.32  Aligned_cols=20  Identities=20%  Similarity=0.220  Sum_probs=15.2

Q ss_pred             EEEEEcCCCchHHHH-HHHHH
Q 019694           23 ILGIWGGKGQGKSFQ-CELVF   42 (337)
Q Consensus        23 giLL~GpPGtGKT~l-A~aiA   42 (337)
                      -+|+.|+||||||+. +..++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~   36 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIA   36 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHH
Confidence            488999999999975 44443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0087  Score=48.31  Aligned_cols=21  Identities=33%  Similarity=0.226  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|+||+|||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            788999999999999998754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.65  E-value=0.0078  Score=47.93  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|+||+|||+|.+.+...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999998653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.57  E-value=0.0056  Score=51.68  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +....+.|.||.|+|||||.+.++..+
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            344568899999999999999998755

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.0098  Score=51.44  Aligned_cols=29  Identities=21%  Similarity=0.134  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++.-..+.|.||.|||||||.+.++.-..
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            34445788999999999999999987543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.45  E-value=0.017  Score=48.78  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA   54 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~   54 (337)
                      +-|.+-|+-|+||||+++.+++.+......+..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~   36 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF   36 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence            457788999999999999999999776665543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.41  E-value=0.0093  Score=47.72  Aligned_cols=22  Identities=18%  Similarity=-0.023  Sum_probs=19.2

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|+|.|.||+|||+|...+...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3889999999999999998653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.35  E-value=0.011  Score=51.41  Aligned_cols=27  Identities=19%  Similarity=0.182  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.--.+.|.||.|+|||||+++++.-.
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            334568899999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.0054  Score=51.83  Aligned_cols=26  Identities=19%  Similarity=0.073  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |-|.|-|+-|+||||+++.+++.+.-
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            56889999999999999999998853

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.012  Score=46.99  Aligned_cols=20  Identities=20%  Similarity=0.155  Sum_probs=18.4

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|+||+|||+|+..+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.01  Score=53.86  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=27.0

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---C--CCcEEecCC
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---G--INPIMMSAG   55 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~--~~~i~vs~s   55 (337)
                      ...-|.++||||+|||+|..+++..+   |  +.++.++.+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps   93 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   93 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCc
Confidence            35678999999999999999998764   3  334555544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.27  E-value=0.0099  Score=51.34  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.--.+.|.||.|||||||.+.++.-.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCC
Confidence            344568899999999999999997754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.27  E-value=0.011  Score=53.46  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHh---CC--CcEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKM---GI--NPIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l---~~--~~i~vs~s~   56 (337)
                      ...-|.++||||+|||||..+++..+   |.  .++.++.+.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss   91 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   91 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence            45668899999999999999998764   33  345555443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.26  E-value=0.012  Score=46.88  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|++|+|||+|.+.+...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999998664

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.012  Score=46.97  Aligned_cols=21  Identities=33%  Similarity=0.257  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.||+|||+|++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.19  E-value=0.011  Score=48.59  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|+|.|+||+|||+|..++..+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.17  E-value=0.012  Score=47.16  Aligned_cols=21  Identities=24%  Similarity=0.158  Sum_probs=18.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -|.|.|+||+|||+|.+++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999964

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.013  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|...+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.012  Score=47.82  Aligned_cols=20  Identities=25%  Similarity=0.111  Sum_probs=18.2

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|+||+|||+|++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78899999999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.14  E-value=0.012  Score=51.19  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=24.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCc
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE   56 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~   56 (337)
                      .+.|.||.|+|||||.+.++.-+.-  .-+.+++.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~   61 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD   61 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEE
Confidence            4558899999999999999986643  234444443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.09  E-value=0.013  Score=50.78  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.-..+.|.||.|+|||||.+.++.-..
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3345688999999999999999987654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.01  Score=51.58  Aligned_cols=28  Identities=29%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.-..+.|.||.|+|||||++.++.-..
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          29 PAGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             CSSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            3345688999999999999999977543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.013  Score=47.05  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+.+.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.03  E-value=0.014  Score=46.74  Aligned_cols=21  Identities=19%  Similarity=0.029  Sum_probs=19.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|++|+|||+|.+.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.015  Score=46.70  Aligned_cols=21  Identities=38%  Similarity=0.513  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|++|+|||+|.+.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.98  E-value=0.012  Score=51.11  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +++-..+.|.||.|+|||||++.++.-.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3445678899999999999999997754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.93  E-value=0.014  Score=51.87  Aligned_cols=30  Identities=30%  Similarity=0.451  Sum_probs=24.6

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      .+++-..+.|.||.|+|||||+++++..+.
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            344556788999999999999999988653

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.93  E-value=0.014  Score=51.50  Aligned_cols=21  Identities=29%  Similarity=0.270  Sum_probs=15.8

Q ss_pred             EEEEcCCCchHHHH-HHHHHHH
Q 019694           24 LGIWGGKGQGKSFQ-CELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~l-A~aiA~~   44 (337)
                      +|+.|+||||||+. ++.++..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHH
Confidence            88999999999964 4445443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.016  Score=46.79  Aligned_cols=20  Identities=25%  Similarity=0.210  Sum_probs=18.4

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |++.|+||+|||+|++.+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.89  E-value=0.014  Score=50.37  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHHHhCCC--cEEecCCc
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGE   56 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~~l~~~--~i~vs~s~   56 (337)
                      .--.+.|.||.|+|||||.+.++.-+...  -+.+++.+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~   63 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD   63 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEe
Confidence            33468899999999999999998865432  34444433

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.87  E-value=0.02  Score=46.89  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ..|+ |.|.|+||+|||||.+++..
T Consensus        22 ~~~~-I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPE-IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCE-EEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCE-EEEECCCCCCHHHHHHHhcC
Confidence            3444 78899999999999999964

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.84  E-value=0.016  Score=46.41  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|+||+|||+|.+.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.83  E-value=0.014  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.081  Sum_probs=19.5

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      -|+|.|+||+|||+|..++.++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.014  Score=50.95  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ++-..+.|.||.|+|||||++.+.....
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            4445689999999999999999977553

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.018  Score=46.19  Aligned_cols=21  Identities=24%  Similarity=0.145  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|.+|+|||+|++.+...
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.74  E-value=0.013  Score=50.95  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++.-..+.|.||.|||||||.+.++.-.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3344568899999999999999998744

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.73  E-value=0.017  Score=44.54  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      +..+|.+|+|+|||+++-.++.+.+..++.+...
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~   42 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS   42 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence            5578999999999999877777778776666554

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.016  Score=46.46  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.||+|||+|.+.+...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            889999999999999988763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.72  E-value=0.014  Score=46.72  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHH
Q 019694           21 PLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      ..=|++.|+||+|||+|...+..
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            34589999999999999998844

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.017  Score=46.14  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|++|+|||+|...+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.017  Score=46.04  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|.||+|||+|.+.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.69  E-value=0.018  Score=46.78  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.||+|||+|+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.018  Score=45.95  Aligned_cols=20  Identities=15%  Similarity=0.033  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.+|+|||+|.+.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.63  E-value=0.019  Score=45.53  Aligned_cols=21  Identities=19%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|++.+...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.61  E-value=0.015  Score=50.92  Aligned_cols=27  Identities=22%  Similarity=0.222  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      +.--.+.|.||.|+|||||+++++.-.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            344568899999999999999997643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.019  Score=45.82  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=18.0

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.+|+|||+|...+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999998865

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.36  E-value=0.02  Score=46.06  Aligned_cols=22  Identities=32%  Similarity=0.314  Sum_probs=19.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      =|+|.|.+|+|||+|.+.+...
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.021  Score=45.48  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      =|+|.|++|+|||+|.+.+...
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3778899999999999998763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.021  Score=45.78  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.4

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.||+|||+|++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.022  Score=45.20  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.+|+|||+|++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68889999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.023  Score=45.39  Aligned_cols=21  Identities=19%  Similarity=0.147  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|++|+|||+|++.+...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988663

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.024  Score=45.46  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|+||+|||+|...+...
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999888763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.026  Score=45.54  Aligned_cols=21  Identities=29%  Similarity=0.132  Sum_probs=19.1

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      =|++.|.+|+|||+|.+.+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999999876

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.021  Score=49.38  Aligned_cols=29  Identities=24%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +++...+.|.||.|+|||||.+.++....
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45556788999999999999999988653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.08  E-value=0.026  Score=44.97  Aligned_cols=21  Identities=24%  Similarity=0.231  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.024  Score=45.65  Aligned_cols=21  Identities=24%  Similarity=0.120  Sum_probs=18.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|...+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.01  E-value=0.029  Score=45.24  Aligned_cols=28  Identities=25%  Similarity=0.105  Sum_probs=22.4

Q ss_pred             CCCCCCCcEEEEEcCCCchHHHHHHHHH
Q 019694           15 LPNIKVPLILGIWGGKGQGKSFQCELVF   42 (337)
Q Consensus        15 ~~g~~~p~giLL~GpPGtGKT~lA~aiA   42 (337)
                      +.+-+.-.=|+|.|+||+|||+|.+.+.
T Consensus        11 l~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          11 LWGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             GTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             HhCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            3355556678899999999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.96  E-value=0.028  Score=45.03  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.028  Score=44.76  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=18.9

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.023  Score=45.46  Aligned_cols=20  Identities=25%  Similarity=0.307  Sum_probs=17.8

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.+|+|||+|++.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            67899999999999998854

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.85  E-value=0.049  Score=45.36  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=26.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCCcEEecCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAG   55 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~~i~vs~s   55 (337)
                      .+|..|+|+|||.++-+++.+++.+.+.+...
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~  119 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  119 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             cEEEeCCCCCceehHHhHHHHhcCceeEEEcc
Confidence            45788999999999999999998887766654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.81  E-value=0.03  Score=44.64  Aligned_cols=21  Identities=24%  Similarity=0.186  Sum_probs=18.4

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999987653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.80  E-value=0.018  Score=46.33  Aligned_cols=21  Identities=14%  Similarity=-0.013  Sum_probs=18.7

Q ss_pred             EEEEEcCCCchHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~   43 (337)
                      -|+|.|+||+|||+|.+.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.029  Score=45.11  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=18.1

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.+|+|||+|++.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.028  Score=46.09  Aligned_cols=21  Identities=29%  Similarity=0.215  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|++|+|||+|...+...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            788999999999999988753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.54  E-value=0.027  Score=48.64  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhCC--CcEEecCCcc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL   57 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~~--~~i~vs~s~l   57 (337)
                      +.-..+.|.||.|+|||||.++++.-+..  .-+.+++.++
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i   70 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI   70 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence            33456889999999999999999876543  2344444433

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.036  Score=44.36  Aligned_cols=21  Identities=38%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999998763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.41  E-value=0.019  Score=46.11  Aligned_cols=20  Identities=25%  Similarity=0.189  Sum_probs=8.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|.||+|||+|.+.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999987764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.25  E-value=0.027  Score=45.58  Aligned_cols=20  Identities=30%  Similarity=0.313  Sum_probs=17.8

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |.|.|+||+|||+|..++..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67899999999999999854

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.20  E-value=0.036  Score=44.89  Aligned_cols=21  Identities=14%  Similarity=0.151  Sum_probs=18.7

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999988763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.18  E-value=0.015  Score=45.71  Aligned_cols=21  Identities=24%  Similarity=0.237  Sum_probs=19.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |.|.|.||+|||+|..++..+
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.17  E-value=0.032  Score=48.56  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      +.--.+.|.||.|+|||||+++++....
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            3445688999999999999999987654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.037  Score=44.12  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.4

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .|+|.|.||+|||+|..++.++
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.041  Score=44.49  Aligned_cols=23  Identities=13%  Similarity=0.027  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .=|+|.|.+|+|||+|.+.+...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34789999999999999988764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.98  E-value=0.14  Score=43.18  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHh
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ..+|+|..|+|||||.+.+.++.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            47899999999999999987754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.02  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=17.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |++.|++|+|||+|...+...
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999987553

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.041  Score=44.69  Aligned_cols=21  Identities=14%  Similarity=0.009  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|.+.+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999988763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.046  Score=50.15  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s   55 (337)
                      +.+++.|++|+|||++++.+..+   .|..++.++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k   87 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN   87 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            77999999999999988766544   36677777653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=91.80  E-value=0.068  Score=42.88  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             CCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           17 NIKVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        17 g~~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .++...-|.|.|.||+|||+|..++...
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3444456889999999999999999753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.043  Score=44.75  Aligned_cols=21  Identities=14%  Similarity=0.018  Sum_probs=18.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|.+|+|||+|...+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            778899999999999887653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.67  E-value=0.036  Score=44.60  Aligned_cols=20  Identities=25%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |.|.|.||+|||+|..++..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            77899999999999999854

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.023  Score=45.28  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .-|.|.|+|++|||+|.+++..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3478899999999999998843

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.56  E-value=0.017  Score=46.11  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             EEEEEcCCCchHHHHHHHHHHHhC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ..+|+||.|+|||++..||.--++
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            457899999999999999987664

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.38  E-value=0.031  Score=42.23  Aligned_cols=20  Identities=15%  Similarity=-0.046  Sum_probs=16.1

Q ss_pred             CCcEEEEEcCCCchHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCE   39 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~   39 (337)
                      ..+-++|++|||+|||..+-
T Consensus         6 ~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHH
T ss_pred             cCCcEEEEcCCCCChhHHHH
Confidence            34678999999999996653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.04  Score=47.20  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=21.3

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      +.--.+.|.||.|+|||||.++++.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3445688999999999999999976

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.1  Score=44.76  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      .+.|.++|.-|+||||++-.+|..+   |..++.++..
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5788899999999999877665544   7777777664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.89  E-value=0.27  Score=39.66  Aligned_cols=43  Identities=21%  Similarity=0.201  Sum_probs=28.0

Q ss_pred             EEEEcCCCchHHHHHHHHHH----HhCCCcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA----KMGINPIMMSAGELESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~----~l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      +|+.+|+|+|||+++-.++.    +.+...+.+...          ..++++.+++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~----------~~L~~q~~~~~   72 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT----------KPLVLQHAESF   72 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS----------HHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc----------hHHHHHHHHHH
Confidence            67899999999986665554    234455555543          24555666665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.82  E-value=0.05  Score=46.58  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      .+...|.|++|+|||+|..++..+....
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~  122 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLR  122 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhh
Confidence            3567899999999999999997655544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.78  E-value=0.15  Score=40.05  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=23.8

Q ss_pred             EEEEcCCCchHHH-HHHHH--HHHhCCCcEEecCC
Q 019694           24 LGIWGGKGQGKSF-QCELV--FAKMGINPIMMSAG   55 (337)
Q Consensus        24 iLL~GpPGtGKT~-lA~ai--A~~l~~~~i~vs~s   55 (337)
                      =+++||-.+|||+ |.+.+  +...|..++.++.+
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~   39 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK   39 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence            3689999999998 77766  44567777766554

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.75  E-value=0.048  Score=47.20  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=22.4

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +.+.-|+|.|.||+|||++..+|..+
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            44677999999999999999999764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.60  E-value=0.25  Score=43.23  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      ++|.|++|+|||+|+..++...   ...+..+-       .+|+..+.+.+.+++.
T Consensus        71 ~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~-------~iGer~~ev~~~~~~~  119 (276)
T d2jdid3          71 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEM  119 (276)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE-------EESCCHHHHHHHHHHH
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE-------EeccChHHHHHHHHHH
Confidence            7899999999999999998763   22222111       2567766666665554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.58  E-value=0.064  Score=43.36  Aligned_cols=18  Identities=22%  Similarity=0.239  Sum_probs=17.0

Q ss_pred             EEEEcCCCchHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELV   41 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~ai   41 (337)
                      |+|.|.+|+|||+|.+.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999988

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.15  Score=41.35  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=25.9

Q ss_pred             cEEEEEcC-CCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           22 LILGIWGG-KGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        22 ~giLL~Gp-PGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      |-++++|- +|+|||+++-.+|..+   |..+..++.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            56889999 5999999888887754   777777654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.43  E-value=0.35  Score=38.64  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=18.3

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |-+.|.|++|||||..++.+
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            77999999999999999964

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.11  Score=41.97  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      .-|++.|.+|+|||+|...+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34789999999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.11  Score=46.07  Aligned_cols=22  Identities=14%  Similarity=0.022  Sum_probs=19.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHh
Q 019694           24 LGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++|.|++|+|||+|+..+++..
T Consensus        46 ~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          46 GLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.73  E-value=0.17  Score=43.23  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG   55 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s   55 (337)
                      |-|-++|.-|+||||+|-.+|..+   |..+..++..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            456679999999999988776654   7777777764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.63  E-value=0.089  Score=47.52  Aligned_cols=26  Identities=19%  Similarity=0.091  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .-|.|-|+-|+||||+++.+++.++.
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            45778899999999999999998854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.54  E-value=0.045  Score=47.07  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      .+..+|.|++|+|||+|..++..+...
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~  123 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGL  123 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC----
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHh
Confidence            456678899999999999999655443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.38  E-value=0.11  Score=43.37  Aligned_cols=21  Identities=24%  Similarity=0.162  Sum_probs=18.5

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |||.|..|+|||+|.+.+...
T Consensus         9 illlG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999987544

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.91  E-value=0.14  Score=41.01  Aligned_cols=21  Identities=24%  Similarity=0.109  Sum_probs=18.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      |+|.|..|+|||+|.+.+...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.65  E-value=0.21  Score=44.81  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCchHHHHHHHHHHHhCCCc
Q 019694           21 PLILGIWGGKGQGKSFQCELVFAKMGINP   49 (337)
Q Consensus        21 p~giLL~GpPGtGKT~lA~aiA~~l~~~~   49 (337)
                      |.--+|+||.|+|||++..||+--+|...
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg~~~   53 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLGVRS   53 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            33458999999999999999987776543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.92  E-value=0.36  Score=42.17  Aligned_cols=21  Identities=19%  Similarity=0.128  Sum_probs=17.2

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +++.|++|+|||+|+..++..
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHT
T ss_pred             EeeccCCCCChHHHHHHHHhh
Confidence            678999999999998765443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.25  E-value=0.14  Score=44.26  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMG   46 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~   46 (337)
                      ..-+|+||.|+|||++.+|++--++
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4568999999999999999976554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.94  E-value=0.15  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.8

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |.|-|+-|+||||+++.+++.+..
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            668899999999999999998865

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.75  E-value=0.39  Score=39.41  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=24.0

Q ss_pred             cEEEEE-cCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           22 LILGIW-GGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        22 ~giLL~-GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      |.|.++ |..|+|||++|..+|..+   |..+..++.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~   38 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDA   38 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            345555 789999999999887654   666666654

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.64  E-value=1.1  Score=37.89  Aligned_cols=49  Identities=14%  Similarity=0.045  Sum_probs=34.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCCccccCCCCChHHHHHHHHHHH
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREA   76 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A   76 (337)
                      ...|...||+|..|+|||.++-..+..   .|...+.+...          ..+-.+.|...
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt----------~~La~Q~~~~~  124 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT----------TLLAQQHYDNF  124 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS----------HHHHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccH----------HHhHHHHHHHH
Confidence            355778999999999999887765444   36677777654          23445666666

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.57  E-value=0.16  Score=41.47  Aligned_cols=18  Identities=22%  Similarity=0.095  Sum_probs=15.4

Q ss_pred             cEEEEEcCCCchHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCE   39 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~   39 (337)
                      +.+++.+|+|+|||+.+-
T Consensus        41 ~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             SCEEEECSSHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHH
Confidence            458899999999998764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.89  E-value=0.55  Score=35.91  Aligned_cols=54  Identities=7%  Similarity=-0.013  Sum_probs=36.1

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh----C-CCcEEecCCccccCCCCChHHHHHHHHHHHHHHHHhcCceE
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC   87 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l----~-~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~~~~~p~I   87 (337)
                      -.|+|.|-+|+||+++|+++...+    | .++-.+++.            +++.+.--|.++.+.+.-.+
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~------------ni~ri~fva~e~~k~G~~~i   65 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN------------NKTELLSLIQDFIGSGSGLI   65 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT------------TCHHHHTTHHHHHHTTCEEE
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC------------CHHHHHHHHHHHHhcCCEEE
Confidence            468899999999999999996654    2 333333322            34455556778888766433

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.59  E-value=0.25  Score=39.18  Aligned_cols=20  Identities=25%  Similarity=0.204  Sum_probs=17.7

Q ss_pred             EEEEcCCCchHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~   43 (337)
                      |+|.|..|+|||+|.+.+-.
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999998744

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=84.48  E-value=0.19  Score=45.15  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=19.0

Q ss_pred             EEEEcCCCchHHHHHHHHHHHhCCC
Q 019694           24 LGIWGGKGQGKSFQCELVFAKMGIN   48 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~l~~~   48 (337)
                      |.|-|+=|+||||+++.+++.++..
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~~   31 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSRD   31 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----C
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCCC
Confidence            6678999999999999999887643

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.47  E-value=0.97  Score=39.02  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=27.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHH---HhCCCcEEecCCc
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFA---KMGINPIMMSAGE   56 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~---~l~~~~i~vs~s~   56 (337)
                      ..|..-||+|..|+|||..+-..+.   ..|.....+-..+
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~  142 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS  142 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred             cCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence            4456679999999999987765543   4577777776653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.34  E-value=0.5  Score=38.70  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             cEEEEE-cCCCchHHHHHHHHHHHh---CCCcEEecC
Q 019694           22 LILGIW-GGKGQGKSFQCELVFAKM---GINPIMMSA   54 (337)
Q Consensus        22 ~giLL~-GpPGtGKT~lA~aiA~~l---~~~~i~vs~   54 (337)
                      |.|-++ +..|+|||++|-.+|..+   |.++..++.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~   39 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG   39 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            456677 568999999998887654   677777764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.88  E-value=0.42  Score=41.11  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=24.3

Q ss_pred             EEEEEcCCCchHHHHHHHHHHH---hCCCcEEecCC
Q 019694           23 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG   55 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~aiA~~---l~~~~i~vs~s   55 (337)
                      -|-++|.-|+||||+|-.+|..   .|..+..++..
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            3456999999999977666543   47888877653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.82  E-value=0.28  Score=45.04  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCchHHHHHHHHHH
Q 019694           20 VPLILGIWGGKGQGKSFQCELVFA   43 (337)
Q Consensus        20 ~p~giLL~GpPGtGKT~lA~aiA~   43 (337)
                      .|.-|.+.|.||+|||+|..++..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            577899999999999999999964

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.12  E-value=0.62  Score=38.73  Aligned_cols=49  Identities=12%  Similarity=-0.013  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHh---CCCcEEecCCccccCCCCChHHHHHHHHHHHHHHH
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADII   80 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l---~~~~i~vs~s~l~~~~~Ge~~~~ir~~f~~A~~~~   80 (337)
                      +.+++.+|+|+|||+.+-..+..+   +...+.+...          ..++.+.+++..+..
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt----------~~La~Q~~~~l~~~~  110 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPT----------SLLVIQAAETIRKYA  110 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESC----------HHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEecc----------HHHHHHHHHHHHHHH
Confidence            468899999999997665544332   4455555543          245566666653333

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.10  E-value=0.94  Score=39.58  Aligned_cols=21  Identities=19%  Similarity=0.079  Sum_probs=17.6

Q ss_pred             EEEEcCCCchHHHHHHHHHHH
Q 019694           24 LGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        24 iLL~GpPGtGKT~lA~aiA~~   44 (337)
                      ++|.|++|+|||+++..++..
T Consensus        71 ~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          71 ELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CEEEESTTSSHHHHHHHHHHH
T ss_pred             EEeecCCCCChHHHHHHHHHh
Confidence            678999999999998877643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.76  E-value=0.39  Score=40.10  Aligned_cols=27  Identities=19%  Similarity=0.398  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCchHHHHHHHHHHHh
Q 019694           18 IKVPLILGIWGGKGQGKSFQCELVFAKM   45 (337)
Q Consensus        18 ~~~p~giLL~GpPGtGKT~lA~aiA~~l   45 (337)
                      ++.|. |-+.|.|++|||+|+.++....
T Consensus         3 ~r~p~-IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           3 IRSPI-VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             ECCCE-EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCE-EEEEeCCCccHHHHHHHHHhhc
Confidence            45565 7788999999999999997654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=82.41  E-value=0.43  Score=41.41  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      |.|.+.|..|+|||+|+.++....|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            56788999999999999999776654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.38  E-value=0.42  Score=41.75  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCchHHHHHHHHHHHhCC
Q 019694           22 LILGIWGGKGQGKSFQCELVFAKMGI   47 (337)
Q Consensus        22 ~giLL~GpPGtGKT~lA~aiA~~l~~   47 (337)
                      +.|-|.|..|+|||+|+.++....|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            57889999999999999999877664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.03  E-value=0.37  Score=39.80  Aligned_cols=26  Identities=19%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCchHHHHHHHHHHH
Q 019694           19 KVPLILGIWGGKGQGKSFQCELVFAK   44 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~lA~aiA~~   44 (337)
                      +|+..|.+.|-++.|||||+.++...
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHH
Confidence            34567889999999999999998644

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.91  E-value=0.23  Score=44.38  Aligned_cols=17  Identities=24%  Similarity=0.386  Sum_probs=14.8

Q ss_pred             EEEEEcCCCchHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCE   39 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~   39 (337)
                      .-|++|.+|||||||..
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            46999999999999764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.96  E-value=0.3  Score=43.44  Aligned_cols=17  Identities=24%  Similarity=0.386  Sum_probs=14.6

Q ss_pred             EEEEEcCCCchHHHHHH
Q 019694           23 ILGIWGGKGQGKSFQCE   39 (337)
Q Consensus        23 giLL~GpPGtGKT~lA~   39 (337)
                      .-|+.|.+|||||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            35899999999999873

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.28  E-value=0.39  Score=41.06  Aligned_cols=18  Identities=17%  Similarity=0.012  Sum_probs=15.4

Q ss_pred             CCCcEEEEEcCCCchHHH
Q 019694           19 KVPLILGIWGGKGQGKSF   36 (337)
Q Consensus        19 ~~p~giLL~GpPGtGKT~   36 (337)
                      +.-+.+|+.+|+|+|||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            455779999999999995