Citrus Sinensis ID: 019706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKTTFDG
ccccccEEEEcHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccEEEcccccccccccEEEEEEEccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccEEEcEEcccccccHHHHHHHHHHcccccccc
ccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccccEEEEEEEccccEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHcccHHHHHHHHHHHHHcHHHHHHccccccHHHHHccccEEcccccEEEEEEEccHHEHcccccccEEEEEEEEEEcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHcccccccccEEEEHEEccccccHHHHHHHHHHHHcccccc
MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCshlhfpnlesafldpnhqGWVKALVSSgagvfenenADIWSDLLSLLRFRginvdkthikdyaercwcpsmssssskhsskIESANQGMVAAVVSILRSlgedplreellgtPRRFVKWLMNFENSIIDMKLngfafgrmdllkpngevsrsnehihselnlsfwsqcehhllpfhgvVHIGYFcaeglnpiGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGiekfgsstATIAVLGRFSTDHSARAMFLqnipkttfdg
mcqlvnefwdlskfsRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSlgedplreellgtpRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGiekfgsstATIAVLGRFSTDHSARAmflqnipkttfdg
MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPsmssssskhsskiesANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKTTFDG
***LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWC********************MVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPN*******EHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQ*********
***LVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLS**********************************************AVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQ**PK*****
MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCP****************NQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKTTFDG
MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINV*****************************SANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKT****
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MCQLVNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPNHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKTTFDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q8YLL1235 GTP cyclohydrolase 1 1 OS yes no 0.522 0.748 0.400 3e-29
Q8DJB8229 GTP cyclohydrolase 1 OS=T yes no 0.575 0.847 0.355 5e-29
Q2JR69229 GTP cyclohydrolase 1 OS=S yes no 0.554 0.816 0.376 1e-28
Q55759234 GTP cyclohydrolase 1 OS=S N/A no 0.537 0.773 0.393 2e-28
P51601243 GTP cyclohydrolase 1 OS=S yes no 0.522 0.724 0.409 2e-28
Q5N623213 GTP cyclohydrolase 1 OS=S yes no 0.563 0.892 0.381 2e-28
Q54769213 GTP cyclohydrolase 1 OS=S yes no 0.563 0.892 0.381 2e-28
O13774235 GTP cyclohydrolase 1 OS=S yes no 0.543 0.778 0.367 2e-27
P50141236 GTP cyclohydrolase 1 OS=G yes no 0.501 0.716 0.395 3e-27
Q2JPT8229 GTP cyclohydrolase 1 OS=S yes no 0.593 0.873 0.360 3e-27
>sp|Q8YLL1|GCH11_NOSS1 GTP cyclohydrolase 1 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=folE1 PE=3 SV=1 Back     alignment and function desciption
 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 112/202 (55%), Gaps = 26/202 (12%)

Query: 137 ESANQGMVAAVVSILRSLGEDPLREELLGTPRRF---VKWLMNFENSIIDMKLNGFAFGR 193
           E   + M+ AV SIL  +GEDP RE LL TP+R    +++L +  N  ++  LNG  F  
Sbjct: 45  EEDMESMMGAVRSILVGVGEDPEREGLLKTPKRVAEAMRFLTSGYNQSLEELLNGAVF-- 102

Query: 194 MDLLKPNGEVSRSNEHIHSEL----NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKS 249
                         +  H+E+    +++F+S CEHH+LPF G  H+ Y   + +  +G S
Sbjct: 103 --------------DEGHNEMVLVRDINFFSLCEHHMLPFMGRAHVAYIPNQKV--VGLS 146

Query: 250 LLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGD-VIVVVEASHTCMIARGIEKFGSSTA 308
            L  IV  Y  +LQVQERL RQIAE V ++L    V VV+EASH CM+ RG++K GS T 
Sbjct: 147 KLARIVEMYSRRLQVQERLTRQIAEAVQTILEPQGVAVVMEASHMCMVMRGVQKPGSWTV 206

Query: 309 TIAVLGRFSTDHSARAMFLQNI 330
           T A+LG F  +   R  F   I
Sbjct: 207 TSAMLGVFQEEQKTREEFFNLI 228

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 1EC: 6
>sp|Q8DJB8|GCH1_THEEB GTP cyclohydrolase 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=folE PE=3 SV=1 Back     alignment and function description
>sp|Q2JR69|GCH1_SYNJA GTP cyclohydrolase 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=folE PE=3 SV=1 Back     alignment and function description
>sp|Q55759|GCH1_SYNY3 GTP cyclohydrolase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=folE PE=3 SV=1 Back     alignment and function description
>sp|P51601|GCH1_YEAST GTP cyclohydrolase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FOL2 PE=1 SV=1 Back     alignment and function description
>sp|Q5N623|GCH1_SYNP6 GTP cyclohydrolase 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=folE PE=3 SV=1 Back     alignment and function description
>sp|Q54769|GCH1_SYNE7 GTP cyclohydrolase 1 OS=Synechococcus elongatus (strain PCC 7942) GN=folE PE=3 SV=2 Back     alignment and function description
>sp|O13774|GCH1_SCHPO GTP cyclohydrolase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.13 PE=1 SV=1 Back     alignment and function description
>sp|P50141|GCH1_CHICK GTP cyclohydrolase 1 OS=Gallus gallus GN=GCH1 PE=2 SV=1 Back     alignment and function description
>sp|Q2JPT8|GCH1_SYNJB GTP cyclohydrolase 1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=folE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
224129572 465 predicted protein [Populus trichocarpa] 0.961 0.696 0.743 1e-142
255580519 469 GTP cyclohydrolase I, putative [Ricinus 0.836 0.601 0.749 1e-137
356524467 457 PREDICTED: uncharacterized protein LOC10 0.967 0.713 0.721 1e-136
356567804 467 PREDICTED: uncharacterized protein LOC10 0.967 0.698 0.706 1e-132
147812001 445 hypothetical protein VITISV_014899 [Viti 0.940 0.712 0.693 1e-129
357505161 456 GTP cyclohydrolase I [Medicago truncatul 0.952 0.703 0.700 1e-129
147818727404 hypothetical protein VITISV_033826 [Viti 0.940 0.784 0.696 1e-129
224065413 465 predicted protein [Populus trichocarpa] 0.955 0.692 0.721 1e-129
225425650 445 PREDICTED: uncharacterized protein LOC10 0.940 0.712 0.693 1e-129
147845441435 hypothetical protein VITISV_035826 [Viti 0.943 0.731 0.685 1e-126
>gi|224129572|ref|XP_002320619.1| predicted protein [Populus trichocarpa] gi|222861392|gb|EEE98934.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/327 (74%), Positives = 279/327 (85%), Gaps = 3/327 (0%)

Query: 11  LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDPN 70
           LSK SRVA+VF+KRLQ+PQRLADE+CSAL HG+ PAGVAV+LQC H+ FPN+ES FLD N
Sbjct: 141 LSKLSRVADVFAKRLQDPQRLADEICSALHHGVMPAGVAVVLQCLHIQFPNIESLFLDSN 200

Query: 71  HQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSS 130
           HQGWVKA+V SG+GVFENE AD+W D LSLL+FRGIN+DKT +KD  ++CWCPS  SSS+
Sbjct: 201 HQGWVKAVVHSGSGVFENELADVWGDFLSLLKFRGINLDKTQMKDSVQQCWCPSRYSSSA 260

Query: 131 KHSSKIESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFA 190
           K    I   N+GMV AV SIL SLGEDPLR+EL+GTP RFVKWLMNF++  ++MKLNG A
Sbjct: 261 K---VIGPPNRGMVTAVTSILSSLGEDPLRKELVGTPSRFVKWLMNFQSPNLEMKLNGVA 317

Query: 191 FGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSL 250
            GRMD LK NGEVS + + I++EL LSFWSQCEHHLLPF+GVVHIGY+CAE   P+ KSL
Sbjct: 318 CGRMDPLKQNGEVSHNKQQIYTELCLSFWSQCEHHLLPFYGVVHIGYYCAEETTPLSKSL 377

Query: 251 LQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSSTATI 310
           LQSIVHFYGFKLQVQERL RQIAETVSSLLGGDV+VVVEA+HTCMI+RGIEKFGSSTATI
Sbjct: 378 LQSIVHFYGFKLQVQERLTRQIAETVSSLLGGDVMVVVEANHTCMISRGIEKFGSSTATI 437

Query: 311 AVLGRFSTDHSARAMFLQNIPKTTFDG 337
           AVLGRFSTD +ARAMFL+NIP     G
Sbjct: 438 AVLGRFSTDPAARAMFLKNIPNPASGG 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255580519|ref|XP_002531084.1| GTP cyclohydrolase I, putative [Ricinus communis] gi|223529330|gb|EEF31298.1| GTP cyclohydrolase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356524467|ref|XP_003530850.1| PREDICTED: uncharacterized protein LOC100816351 [Glycine max] Back     alignment and taxonomy information
>gi|356567804|ref|XP_003552105.1| PREDICTED: uncharacterized protein LOC100783814 [Glycine max] Back     alignment and taxonomy information
>gi|147812001|emb|CAN68065.1| hypothetical protein VITISV_014899 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357505161|ref|XP_003622869.1| GTP cyclohydrolase I [Medicago truncatula] gi|355497884|gb|AES79087.1| GTP cyclohydrolase I [Medicago truncatula] Back     alignment and taxonomy information
>gi|147818727|emb|CAN69497.1| hypothetical protein VITISV_033826 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065413|ref|XP_002301805.1| predicted protein [Populus trichocarpa] gi|222843531|gb|EEE81078.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225425650|ref|XP_002269265.1| PREDICTED: uncharacterized protein LOC100263593 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845441|emb|CAN79046.1| hypothetical protein VITISV_035826 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2098525466 AT3G07270 [Arabidopsis thalian 0.925 0.669 0.604 6.9e-102
SGD|S000003499243 FOL2 "GTP-cyclohydrolase I" [S 0.522 0.724 0.409 1.7e-27
POMBASE|SPAC17A5.13235 SPAC17A5.13 "GTP cyclohydrolas 0.522 0.748 0.372 9.4e-27
DICTYBASE|DDB_G0288481232 gchA "GTP cyclohydrolase I" [D 0.516 0.75 0.401 3.2e-26
ZFIN|ZDB-GENE-001205-3240 gch2 "GTP cyclohydrolase 2" [D 0.510 0.716 0.413 1.8e-25
UNIPROTKB|P50141236 GCH1 "GTP cyclohydrolase 1" [G 0.516 0.737 0.397 2.9e-25
UNIPROTKB|E2RI70249 GCH1 "Uncharacterized protein" 0.516 0.698 0.403 2.9e-25
RGD|61992241 Gch1 "GTP cyclohydrolase 1" [R 0.516 0.721 0.397 4.6e-25
UNIPROTKB|F1MZ14249 GCH1 "Uncharacterized protein" 0.525 0.710 0.396 7.6e-25
WB|WBGene00000298223 cat-4 [Caenorhabditis elegans 0.537 0.811 0.378 9.7e-25
TAIR|locus:2098525 AT3G07270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 197/326 (60%), Positives = 250/326 (76%)

Query:    11 LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLD-P 69
             LSKFSRV +VF+KRLQ+PQRLAD++CSALQH +KPAGVAV+L+CSH+HFP+L+   L+  
Sbjct:   141 LSKFSRVTDVFAKRLQDPQRLADDICSALQHWVKPAGVAVVLECSHIHFPSLDLDSLNLS 200

Query:    70 NHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPXXXXXX 129
             +H+G+VK LVSSG+GVFE+E++++W +  S L F+G+          + + WCP      
Sbjct:   201 SHRGFVKLLVSSGSGVFEDESSNLWGEFQSFLMFKGVKTQALCRNGSSVKEWCPSVKSSS 260

Query:   130 XXXXXXXXXANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGF 189
                       +  MV+AVVSIL+SLGEDPLR+EL+ TP RF+KW++NF+ + ++MKLN F
Sbjct:   261 KLSPE----VDPEMVSAVVSILKSLGEDPLRKELIATPTRFLKWMLNFQRTNLEMKLNSF 316

Query:   190 AFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNP--IG 247
                  +  K NGEV    + +H ELN+ FWS CEHHLLPF+GVVHIGYFCAEG NP  +G
Sbjct:   317 -----NPAKVNGEVKE--KRLHCELNMPFWSMCEHHLLPFYGVVHIGYFCAEGSNPNPVG 369

Query:   248 KSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGIEKFGSST 307
              SL+++IVHFYGFKLQVQER+ RQIAET+S L+GGDVIVV EA HTCMI+RGIEKFGSST
Sbjct:   370 SSLMKAIVHFYGFKLQVQERMTRQIAETLSPLVGGDVIVVAEAGHTCMISRGIEKFGSST 429

Query:   308 ATIAVLGRFSTDHSARAMFLQNIPKT 333
             ATIAVLGRFS+D+SARAMFL  I  T
Sbjct:   430 ATIAVLGRFSSDNSARAMFLDKIHTT 455
GO:0003934 "GTP cyclohydrolase I activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=IEA
GO:0009058 "biosynthetic process" evidence=ISS
GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IEA
SGD|S000003499 FOL2 "GTP-cyclohydrolase I" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC17A5.13 SPAC17A5.13 "GTP cyclohydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288481 gchA "GTP cyclohydrolase I" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-001205-3 gch2 "GTP cyclohydrolase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P50141 GCH1 "GTP cyclohydrolase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RI70 GCH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|61992 Gch1 "GTP cyclohydrolase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MZ14 GCH1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00000298 cat-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.4.160.737
3rd Layer3.5.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN02531469 PLN02531, PLN02531, GTP cyclohydrolase I 0.0
PRK09347188 PRK09347, folE, GTP cyclohydrolase I; Provisional 5e-47
COG0302195 COG0302, FolE, GTP cyclohydrolase I [Coenzyme meta 9e-46
cd00642185 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GT 4e-45
TIGR00063180 TIGR00063, folE, GTP cyclohydrolase I 7e-44
PLN03044188 PLN03044, PLN03044, GTP cyclohydrolase I; Provisio 8e-42
PRK12606201 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed 3e-34
PTZ00484259 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisio 1e-32
pfam0122786 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I 4e-18
PTZ00484259 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisio 1e-11
PLN03044188 PLN03044, PLN03044, GTP cyclohydrolase I; Provisio 2e-10
PRK09347188 PRK09347, folE, GTP cyclohydrolase I; Provisional 5e-09
cd00642185 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GT 6e-09
PLN02531 469 PLN02531, PLN02531, GTP cyclohydrolase I 1e-07
pfam0122786 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I 1e-07
COG0302195 COG0302, FolE, GTP cyclohydrolase I [Coenzyme meta 4e-07
TIGR00063180 TIGR00063, folE, GTP cyclohydrolase I 6e-07
PRK12606201 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed 7e-06
cd00651122 cd00651, TFold, Tunnelling fold (T-fold) 4e-05
>gnl|CDD|215290 PLN02531, PLN02531, GTP cyclohydrolase I Back     alignment and domain information 
 Score =  527 bits (1358), Expect = 0.0
 Identities = 225/334 (67%), Positives = 263/334 (78%), Gaps = 19/334 (5%)

Query: 11  LSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHFPNLESAFLDP- 69
           LSK SRVAEVF+KRLQ+PQRLADE+CSAL HGIKPAGVAV+L+CSH+HFPN     LD  
Sbjct: 141 LSKLSRVAEVFAKRLQDPQRLADEICSALHHGIKPAGVAVVLECSHIHFPNESLGSLDLS 200

Query: 70  NHQGWVKALVSSGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSS 129
           +HQGWVKA V SG+GVFE+E+ ++W + +SLL+FRGINVDK   KD +  CWCPS  SSS
Sbjct: 201 SHQGWVKASVCSGSGVFEDESGNLWEEFVSLLQFRGINVDKRCRKDSSSPCWCPSQDSSS 260

Query: 130 SKHSSKIESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSI-----IDM 184
           +         N  MV+AV SILRSLGEDPLR+EL+ TP RFV+WL+N          ++M
Sbjct: 261 ASPE-----PNPAMVSAVESILRSLGEDPLRKELVLTPSRFVRWLLNSTQGSRMGRNLEM 315

Query: 185 KLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGL- 243
           KLNGFA  +MD L  N     + + +H+ELNL FWSQCEHHLLPF+GVVH+GYFCAEG  
Sbjct: 316 KLNGFACEKMDPLHAN----LNEKTMHTELNLPFWSQCEHHLLPFYGVVHVGYFCAEGGR 371

Query: 244 ---NPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLGGDVIVVVEASHTCMIARGI 300
              NPI +SLLQSIVHFYGF+LQVQERL RQIAETVSSLLGGDV+VVVEASHTCMI+RG+
Sbjct: 372 GNRNPISRSLLQSIVHFYGFRLQVQERLTRQIAETVSSLLGGDVMVVVEASHTCMISRGV 431

Query: 301 EKFGSSTATIAVLGRFSTDHSARAMFLQNIPKTT 334
           EKFGSSTATIAVLGRFS+D  ARAMFLQ+I  T 
Sbjct: 432 EKFGSSTATIAVLGRFSSDAKARAMFLQSIATTN 465

Length = 469
>gnl|CDD|236472 PRK09347, folE, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|223379 COG0302, FolE, GTP cyclohydrolase I [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238349 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate Back     alignment and domain information
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I Back     alignment and domain information
>gnl|CDD|215549 PLN03044, PLN03044, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|237149 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed Back     alignment and domain information
>gnl|CDD|240434 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|216375 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I Back     alignment and domain information
>gnl|CDD|240434 PTZ00484, PTZ00484, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|215549 PLN03044, PLN03044, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|236472 PRK09347, folE, GTP cyclohydrolase I; Provisional Back     alignment and domain information
>gnl|CDD|238349 cd00642, GTP_cyclohydro1, GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate Back     alignment and domain information
>gnl|CDD|215290 PLN02531, PLN02531, GTP cyclohydrolase I Back     alignment and domain information
>gnl|CDD|216375 pfam01227, GTP_cyclohydroI, GTP cyclohydrolase I Back     alignment and domain information
>gnl|CDD|223379 COG0302, FolE, GTP cyclohydrolase I [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I Back     alignment and domain information
>gnl|CDD|237149 PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed Back     alignment and domain information
>gnl|CDD|238351 cd00651, TFold, Tunnelling fold (T-fold) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
PLN02531469 GTP cyclohydrolase I 100.0
COG0302195 FolE GTP cyclohydrolase I [Coenzyme metabolism] 100.0
TIGR00063180 folE GTP cyclohydrolase I. GTP cyclohydrolase I (E 100.0
PLN03044188 GTP cyclohydrolase I; Provisional 100.0
PRK12606201 GTP cyclohydrolase I; Reviewed 100.0
PRK09347188 folE GTP cyclohydrolase I; Provisional 100.0
cd00642185 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) ca 100.0
PF01227179 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: I 100.0
PTZ00484259 GTP cyclohydrolase I; Provisional 100.0
KOG2698247 consensus GTP cyclohydrolase I [Coenzyme transport 100.0
PLN02531 469 GTP cyclohydrolase I 100.0
COG0302195 FolE GTP cyclohydrolase I [Coenzyme metabolism] 100.0
PLN03044188 GTP cyclohydrolase I; Provisional 100.0
TIGR00063180 folE GTP cyclohydrolase I. GTP cyclohydrolase I (E 100.0
cd00642185 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) ca 100.0
PRK12606201 GTP cyclohydrolase I; Reviewed 100.0
PF01227179 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: I 100.0
PRK09347188 folE GTP cyclohydrolase I; Provisional 100.0
PTZ00484259 GTP cyclohydrolase I; Provisional 99.98
KOG2698247 consensus GTP cyclohydrolase I [Coenzyme transport 99.97
PRK13258114 7-cyano-7-deazaguanine reductase; Provisional 99.87
PRK13258114 7-cyano-7-deazaguanine reductase; Provisional 98.71
TIGR03139115 QueF-II 7-cyano-7-deazaguanine reductase. The enzy 93.84
cd00651122 TFold Tunnelling fold (T-fold). The five known T-f 93.47
COG0780149 Enzyme related to GTP cyclohydrolase I [General fu 91.59
PF1448980 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 89.33
>PLN02531 GTP cyclohydrolase I Back     alignment and domain information 
Probab=100.00  E-value=4.6e-103  Score=785.04  Aligned_cols=316  Identities=67%  Similarity=1.075  Sum_probs=272.6

Q ss_pred             CCeEEecchhhHHHHHHhcCcchHHHHHHHHHHHHHhccCCCeeEEEEEeeeccc--cccccccCCCCCCCce---EEEE
Q 019706            5 VNEFWDLSKFSRVAEVFSKRLQNPQRLADEVCSALQHGIKPAGVAVILQCSHLHF--PNLESAFLDPNHQGWV---KALV   79 (337)
Q Consensus         5 ~g~V~GLSKlaRvv~~~ArRlQ~QERLt~qIa~al~~~l~p~GVaV~iea~H~Cm--~~~~~~~~~~~~~~~~---~t~T   79 (337)
                      +|+|+|||||+||||+||||||+|||||+|||++|++.|+|+||+|+|+|+||||  .+||+.     +. ++   .|+|
T Consensus       135 ~~~ViGLSKl~RiV~~~ArRlQvQERLT~qIA~aL~~~l~p~GVaVvieA~H~Cm~~~~RGv~-----~~-~s~~g~t~T  208 (469)
T PLN02531        135 GQRVVGLSKLSRVAEVFAKRLQDPQRLADEICSALHHGIKPAGVAVVLECSHIHFPNESLGSL-----DL-SSHQGWVKA  208 (469)
T ss_pred             CCeEechHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeeecccccccc-----cC-CCCcceEEE
Confidence            7899999999999999999999999999999999999999999999999999999  688762     22 35   6777


Q ss_pred             e--EEEeeecCCChHHHHHHHHHHhcCCCCCCccccccccccccCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhCCC
Q 019706           80 S--SGAGVFENENADIWSDLLSLLRFRGINVDKTHIKDYAERCWCPSMSSSSSKHSSKIESANQGMVAAVVSILRSLGED  157 (337)
Q Consensus        80 s--~~~G~f~~~~~~~r~efl~li~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~avr~lL~alGeD  157 (337)
                      +  .++|+|++|++++|+||+.++..+|++.+...-++++-.||||.++.   +.+  -+...+++++||+.||++||||
T Consensus       209 s~~~~~G~F~~d~~~~r~Efl~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~e~av~~iL~alGeD  283 (469)
T PLN02531        209 SVCSGSGVFEDESGNLWEEFVSLLQFRGINVDKRCRKDSSSPCWCPSQDS---SSA--SPEPNPAMVSAVESILRSLGED  283 (469)
T ss_pred             EeecccceecCCcHHHHHHHHHHhhcCCcccccccCCCccccccCccccc---ccC--CCCCHHHHHHHHHHHHHHhCCC
Confidence            6  55699998743899999999999999999988899999999999966   222  2447788999999999999999


Q ss_pred             CCCccccCchHHHHHHHHHhhcc-----chhhhccCcccCccccCCCCCcccCCCCceEEEecceeeecccccccceeeE
Q 019706          158 PLREELLGTPRRFVKWLMNFENS-----IIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLSFWSQCEHHLLPFHGV  232 (337)
Q Consensus       158 p~regL~~TP~RVak~~~e~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~f~S~CEHHLLPf~G~  232 (337)
                      |+|+||++||+||||||.+++.+     ++...+++....+.+..+.    ..++++||+|+||+|||+||||||||+|+
T Consensus       284 p~RegL~~TP~RVak~~~e~~~G~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~mViv~dI~f~S~CEHHLLPF~G~  359 (469)
T PLN02531        284 PLRKELVLTPSRFVRWLLNSTQGSRMGRNLEMKLNGFACEKMDPLHA----NLNEKTMHTELNLPFWSQCEHHLLPFYGV  359 (469)
T ss_pred             CCchhhhhHHHHHHHHHHHHhcCcccCCCHHHHhhhhcccccccccc----cCCCCceEEEeCceEEEeccccccceEEE
Confidence            99999999999999999998432     1222221111110000000    13568999999999999999999999999


Q ss_pred             EEEEEEeCCC----CccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeeceeecccccCCceE
Q 019706          233 VHIGYFCAEG----LNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMIARGIEKFGSST  307 (337)
Q Consensus       233 ~hVaYiP~~~----~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~~RGv~~~~s~t  307 (337)
                      +||||||+++    .+|+|||||+|||++||||||+|||||+|||++|++ + ++||+|+|+|+||||.||||++++++|
T Consensus       360 ahVaYiP~~~~~~~~~ViGLSKl~RiV~~~arRlQvQERLT~qIA~al~~-l~p~GVaVvieA~H~CM~mRGV~k~~s~t  438 (469)
T PLN02531        360 VHVGYFCAEGGRGNRNPISRSLLQSIVHFYGFRLQVQERLTRQIAETVSS-LLGGDVMVVVEASHTCMISRGVEKFGSST  438 (469)
T ss_pred             EEEEEecCCCCCcCceeechHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hCCCceEEEEEeEEehhhhhCccCCCCeE
Confidence            9999999632    169999999999999999999999999999999999 7 599999999999999999999999999


Q ss_pred             EEeeeeeeecCChHHHHHHHHccCCCCCC
Q 019706          308 ATIAVLGRFSTDHSARAMFLQNIPKTTFD  336 (337)
Q Consensus       308 ~T~a~~G~F~~~~~~r~Efl~li~~~~~~  336 (337)
                      +|++++|.|++|+.+|+|||++|..+.+-
T Consensus       439 ~Tsa~~G~F~~d~~~R~eFl~li~~~~~~  467 (469)
T PLN02531        439 ATIAVLGRFSSDAKARAMFLQSIATTNSS  467 (469)
T ss_pred             EEEEeeeEeCCCHHHHHHHHHHhcccCCC
Confidence            99999999999999999999999887654

>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism] Back     alignment and domain information
>TIGR00063 folE GTP cyclohydrolase I Back     alignment and domain information
>PLN03044 GTP cyclohydrolase I; Provisional Back     alignment and domain information
>PRK12606 GTP cyclohydrolase I; Reviewed Back     alignment and domain information
>PRK09347 folE GTP cyclohydrolase I; Provisional Back     alignment and domain information
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate Back     alignment and domain information
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3 Back     alignment and domain information
>PTZ00484 GTP cyclohydrolase I; Provisional Back     alignment and domain information
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism] Back     alignment and domain information
>PLN02531 GTP cyclohydrolase I Back     alignment and domain information
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism] Back     alignment and domain information
>PLN03044 GTP cyclohydrolase I; Provisional Back     alignment and domain information
>TIGR00063 folE GTP cyclohydrolase I Back     alignment and domain information
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate Back     alignment and domain information
>PRK12606 GTP cyclohydrolase I; Reviewed Back     alignment and domain information
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3 Back     alignment and domain information
>PRK09347 folE GTP cyclohydrolase I; Provisional Back     alignment and domain information
>PTZ00484 GTP cyclohydrolase I; Provisional Back     alignment and domain information
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional Back     alignment and domain information
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional Back     alignment and domain information
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase Back     alignment and domain information
>cd00651 TFold Tunnelling fold (T-fold) Back     alignment and domain information
>COG0780 Enzyme related to GTP cyclohydrolase I [General function prediction only] Back     alignment and domain information
>PF14489 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1is7_A230 Crystal Structure Of Rat GtpchiGFRP STIMULATORY COM 6e-28
1fb1_A196 Crystal Structure Of Human Gtp Cyclohydrolase I Len 3e-26
1wm9_A220 Structure Of Gtp Cyclohydrolase I From Thermus Ther 4e-20
4du6_A223 Crystal Structure Of Gtp Cyclohydrolase I From Yers 2e-13
1gtp_A221 Gtp Cyclohydrolase I Length = 221 1e-12
1n3s_A221 Biosynthesis Of Pteridins. Reaction Mechanism Of Gt 1e-11
1a8r_A221 Gtp Cyclohydrolase I (H112s Mutant) In Complex With 1e-11
1n3t_F221 Biosynthesis Of Pteridins. Reaction Mechanism Of Gt 2e-11
1a9c_A221 Gtp Cyclohydrolase I (C110s Mutant) In Complex With 2e-11
>pdb|1IS7|A Chain A, Crystal Structure Of Rat GtpchiGFRP STIMULATORY COMPLEX Length = 230 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 104/194 (53%), Gaps = 28/194 (14%)
Query: 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLM----NFENSIIDMKLNGFAFGRMDLLK 198
           + AA  SILRSLGEDP R+ LL TP R    +      ++ +I D+ LN   F       
Sbjct: 51  LAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDV-LNDAIF------- 102
Query: 199 PNGEVSRSNEHIHSEL----NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSI 254
                    +  H E+    ++  +S CEHHL+PF G VHIGY   + +  +G S L  I
Sbjct: 103 ---------DEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQV--LGLSKLARI 151
Query: 255 VHFYGFKLQVQERLNRQIAETVS-SLLGGDVIVVVEASHTCMIARGIEKFGSSTATIAVL 313
           V  Y  +LQVQERL +QIA  ++ +L    V VV+EA+H CM+ RG++K  S T T  +L
Sbjct: 152 VEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTML 211
Query: 314 GRFSTDHSARAMFL 327
           G F  D   R  FL
Sbjct: 212 GVFREDPKTREEFL 225
>pdb|1FB1|A Chain A, Crystal Structure Of Human Gtp Cyclohydrolase I Length = 196 Back     alignment and structure
>pdb|1WM9|A Chain A, Structure Of Gtp Cyclohydrolase I From Thermus Thermophilus Hb8 Length = 220 Back     alignment and structure
>pdb|4DU6|A Chain A, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia Pestis Complexed With Gtp Length = 223 Back     alignment and structure
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I Length = 221 Back     alignment and structure
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp Cyclohydrolase I Length = 221 Back     alignment and structure
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp Length = 221 Back     alignment and structure
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp Cyclohydrolase I Length = 221 Back     alignment and structure
>pdb|1A9C|A Chain A, Gtp Cyclohydrolase I (C110s Mutant) In Complex With Gtp Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1a8r_A221 GTP cyclohydrolase I; purine hydrolysis, pterine s 1e-51
1a8r_A221 GTP cyclohydrolase I; purine hydrolysis, pterine s 3e-10
1wur_A220 GTP cyclohydrolase I; beta barrel, protein-inhibit 8e-50
1wur_A220 GTP cyclohydrolase I; beta barrel, protein-inhibit 3e-11
1is8_A230 GTP cyclohydrolase I; enzyme-regulatory protein co 1e-49
1is8_A230 GTP cyclohydrolase I; enzyme-regulatory protein co 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A* Length = 221 Back     alignment and structure
 Score =  169 bits (431), Expect = 1e-51
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 35/207 (16%)

Query: 137 ESANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDM----KLNGFAFG 192
           E+    +   +  I++ L  D   + L+ TP R  K  ++   S +D     K+      
Sbjct: 33  ETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIEN- 91

Query: 193 RMDLLKPNGEVSRSNEHIHSEL----NLSFWSQCEHHLLPFHGVVHIGYFCAEGLNP--- 245
           +M                  E+    +++  S CE H +   G   + Y       P   
Sbjct: 92  KMK---------------VDEMVTVRDITLTSTCESHFVTIDGKATVAYI------PKDS 130

Query: 246 -IGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLLG-GDVIVVVEASHTCMIARGIEKF 303
            IG S +  IV F+  + QVQERL +QI   + +LLG  +V V ++A H C+ ARGI   
Sbjct: 131 VIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDA 190

Query: 304 GSSTATIAVLGRFSTDHSARAMFLQNI 330
            S+T T ++ G F +  + R  FL+ +
Sbjct: 191 TSATTTTSLGGLFKSSQNTRHEFLRAV 217
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A* Length = 221 Back     alignment and structure
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Length = 220 Back     alignment and structure
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Length = 220 Back     alignment and structure
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Length = 230 Back     alignment and structure
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
1wur_A220 GTP cyclohydrolase I; beta barrel, protein-inhibit 100.0
1is8_A230 GTP cyclohydrolase I; enzyme-regulatory protein co 100.0
1a8r_A221 GTP cyclohydrolase I; purine hydrolysis, pterine s 100.0
1wur_A220 GTP cyclohydrolase I; beta barrel, protein-inhibit 100.0
1is8_A230 GTP cyclohydrolase I; enzyme-regulatory protein co 100.0
1a8r_A221 GTP cyclohydrolase I; purine hydrolysis, pterine s 100.0
4f8b_A165 NADPH-dependent 7-cyano-7-deazaguanine reductase; 92.71
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-74  Score=528.17  Aligned_cols=185  Identities=37%  Similarity=0.544  Sum_probs=167.8

Q ss_pred             cchHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEecce
Q 019706          138 SANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLS  217 (337)
Q Consensus       138 ~~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~  217 (337)
                      .+.++|++||++||++|||||+||||.+||+||||||.++        |+||..++.+.++.. .|++++++||+|+||+
T Consensus        33 ~d~~~ie~avr~iL~~lGeDp~RegL~~TP~RvAk~~~e~--------f~Gy~~~~~~~l~~~-~F~~~~~emVivkdI~  103 (220)
T 1wur_A           33 VDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFL--------TRGYRQRLEEVVGGA-VFPAEGSEMVVVKGVE  103 (220)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTSGGGTTHHHHHHHHHHHH--------TGGGGCCHHHHHTTC-EEECSCSSCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCccchhhhHHHHHHHHHHH--------hcccCCChHHhhccc-cCCCCCCcEEEEeCCc
Confidence            3446899999999999999999999999999999999987        456666655554320 2355789999999999


Q ss_pred             eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeecee
Q 019706          218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMI  296 (337)
Q Consensus       218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~  296 (337)
                      |||+||||||||+|++||||||+  ++|+|||||+||||+||||||+|||||+|||++|++.+ ++||+|+|+|+||||+
T Consensus       104 f~S~CEHHllPf~G~ahVaYiP~--~kVvGLSKlaRiV~~farRlQvQERLT~qIAdal~~~L~p~GVaVvieA~H~CM~  181 (220)
T 1wur_A          104 FYSMCEHHLLPFFGKVHIGYIPD--GKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMM  181 (220)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECS--SEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHH
T ss_pred             EEEecCCCCCceEEEEEEEEeCC--CeeecHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhCCCcEEEEEEEEEeCch
Confidence            99999999999999999999995  68999999999999999999999999999999999988 5999999999999999


Q ss_pred             ecccccCCceEEEeeeeeeecCChHHHHHHHHccCCC
Q 019706          297 ARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIPKT  333 (337)
Q Consensus       297 ~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~~~  333 (337)
                      ||||+|++|+|+|++++|.|++|+.+|+|||++|+..
T Consensus       182 mRGV~k~~s~t~Tsa~~G~F~~d~~~R~Efl~li~~~  218 (220)
T 1wur_A          182 MRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLRDG  218 (220)
T ss_dssp             SSTTCCSSCEEEEEEEEEHHHHCHHHHHHHHHHTC--
T ss_pred             hhCcccCCCeEEEEeeeeeeCCCHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999764
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Back     alignment and structure
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A* Back     alignment and structure
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Back     alignment and structure
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A Back     alignment and structure
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A* Back     alignment and structure
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel, protein thioimide complex, pterin binding fold, fold; HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB: 4fgc_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1wpla_194 d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus no 2e-48
d1wpla_194 d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus no 3e-09
d1wura1185 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus 2e-41
d1wura1185 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus 4e-11
d1a8ra_221 d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia co 8e-37
d1a8ra_221 d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia co 1e-04
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 194 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: T-fold
superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
family: GTP cyclohydrolase I
domain: GTP cyclohydrolase I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  159 bits (403), Expect = 2e-48
 Identities = 73/189 (38%), Positives = 97/189 (51%), Gaps = 12/189 (6%)

Query: 143 MVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGE 202
           + AA  SILRSLGEDP R+ LL TP R    +  F     +   +       D       
Sbjct: 15  LAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFD------- 67

Query: 203 VSRSNEHIHSELNLSFWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKL 262
               ++ +    ++  +S CEHHL+PF G VHIGY   +    +G S L  IV  Y  +L
Sbjct: 68  --EDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNK--QVLGLSKLARIVEIYSRRL 123

Query: 263 QVQERLNRQIAETVSSLLGG-DVIVVVEASHTCMIARGIEKFGSSTATIAVLGRFSTDHS 321
           QVQERL +QIA  ++  L    V VV+EA+H CM+ RG++K  S T T  +LG F  D  
Sbjct: 124 QVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPK 183

Query: 322 ARAMFLQNI 330
            R  FL  I
Sbjct: 184 TREEFLTLI 192
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 194 Back     information, alignment and structure
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Length = 185 Back     information, alignment and structure
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Length = 185 Back     information, alignment and structure
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]} Length = 221 Back     information, alignment and structure
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1wura1185 GTP cyclohydrolase I {Thermus thermophilus [TaxId: 100.0
d1wpla_194 GTP cyclohydrolase I {Rat (Rattus norvegicus) [Tax 100.0
d1a8ra_221 GTP cyclohydrolase I {Escherichia coli [TaxId: 562 100.0
d1wura1185 GTP cyclohydrolase I {Thermus thermophilus [TaxId: 100.0
d1wpla_194 GTP cyclohydrolase I {Rat (Rattus norvegicus) [Tax 100.0
d1a8ra_221 GTP cyclohydrolase I {Escherichia coli [TaxId: 562 100.0
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: T-fold
superfamily: Tetrahydrobiopterin biosynthesis enzymes-like
family: GTP cyclohydrolase I
domain: GTP cyclohydrolase I
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.2e-74  Score=514.56  Aligned_cols=183  Identities=38%  Similarity=0.551  Sum_probs=167.6

Q ss_pred             cchHHHHHHHHHHHHHhCCCCCCccccCchHHHHHHHHHhhccchhhhccCcccCccccCCCCCcccCCCCceEEEecce
Q 019706          138 SANQGMVAAVVSILRSLGEDPLREELLGTPRRFVKWLMNFENSIIDMKLNGFAFGRMDLLKPNGEVSRSNEHIHSELNLS  217 (337)
Q Consensus       138 ~~~~~~e~avr~lL~alGeDp~regL~~TP~RVak~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~mViv~~I~  217 (337)
                      .+.+++++||++||++|||||+|+||++||+||||||.++        +.||..++.+.+... .++.++++||+++||+
T Consensus         2 ~d~e~ie~av~~iL~~lGeDp~RegL~~TP~RVAkay~El--------~~Gy~~~~~~~~~~~-~~~~~~~~mVvv~~I~   72 (185)
T d1wura1           2 VDLERLQALAAEWLQVIGEDPGREGLLKTPERVAKAWAFL--------TRGYRQRLEEVVGGA-VFPAEGSEMVVVKGVE   72 (185)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTSGGGTTHHHHHHHHHHHH--------TGGGGCCHHHHHTTC-EEECSCSSCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCchhhhhcHHHHHHHHHHH--------hccccCChHHHhccc-cccccccceEEecCce
Confidence            3567899999999999999999999999999999999987        456666555554421 2356788999999999


Q ss_pred             eeecccccccceeeEEEEEEEeCCCCccccchhHHHHHHHHhcchhhHHHHHHHHHHHHHhHc-CCCeEEEEEeeeecee
Q 019706          218 FWSQCEHHLLPFHGVVHIGYFCAEGLNPIGKSLLQSIVHFYGFKLQVQERLNRQIAETVSSLL-GGDVIVVVEASHTCMI  296 (337)
Q Consensus       218 f~S~CEHHLLPf~G~~hVaYiP~~~~~viGLSKl~RlV~~~ArRlQlQERLT~qIA~aL~~~l-~~GVaV~i~A~H~Cm~  296 (337)
                      |+|+||||||||+|++||||+|+  ++|+|||||+|||++||||||+|||||+|||++|++.+ ++||+|+++|+|+||.
T Consensus        73 f~S~CEHHllPf~G~~~iaYiP~--~~vvGlSKl~Riv~~~arRlQ~QErlt~qIa~~l~~~l~~~gv~V~i~a~H~Cm~  150 (185)
T d1wura1          73 FYSMCEHHLLPFFGKVHIGYIPD--GKILGLSKFARIVDMFARRLQVQERLAVQIAEAIQEVLEPQGVGVVVEGVHLCMM  150 (185)
T ss_dssp             EEEEETTTCCEEEEEEEEEEECS--SEEECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHHCCSEEEEEEEEEEHHHH
T ss_pred             EEeeehhcCccccceEEEEEecC--CCccChHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHhCCCeEEEEEEEeecchh
Confidence            99999999999999999999996  57999999999999999999999999999999999988 5999999999999999


Q ss_pred             ecccccCCceEEEeeeeeeecCChHHHHHHHHccC
Q 019706          297 ARGIEKFGSSTATIAVLGRFSTDHSARAMFLQNIP  331 (337)
Q Consensus       297 ~RGv~~~~s~t~T~a~~G~F~~~~~~r~Efl~li~  331 (337)
                      |||++++++.|+|++++|.|++|+++|+||+++|+
T Consensus       151 ~RGv~~~~~~~~T~~~~G~F~~d~~~r~efl~~i~  185 (185)
T d1wura1         151 MRGVEKQHSRTVTSAMLGVFRENQKTREEFLSHLR  185 (185)
T ss_dssp             SSTTCCSSCEEEEEEEEEHHHHCHHHHHHHHHHTC
T ss_pred             cCCCcCCCceEEEEEEEEEecCChHHHHHHHHhhC
Confidence            99999999999999999999999999999999985
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]} Back     information, alignment and structure