Citrus Sinensis ID: 019707

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
cccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEEccEEEEcccEEEEEccccccEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHcccHHHHHHHHHHHHHHHcc
HHHHccccccccHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEcccEEEEEEEEEEEEccccccEEEEEEEccHHHHHHcEEEEEEEcccccEEEcccccEcccccccEEEEEEEEEEEEHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHcc
mgnfnlhgitapqeygglglgylYHCIAMEEisrasgsvglsygahsnLCINQlvrhgspaqkdkylpklisgehvgalamsepnagsdvvgmkckadrvdggyiingnkmwctngpvAQTLVVYAKTDIKAGSKGITAFIIekgmpgfstaqkldklgmrgsdtCELVFEncfvpnenvlgqegkGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRqreqfgrplgefqfiqGKTADMYTALQSSRSYVYSVArdcdngkvdpkdcAGVILCAAERATQVTLQAIQClggngyvneyatgrllrdaklyeigaGTSEIRRMIIGRALLKQQ
MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYeigagtseirRMIIGRALLKQQ
MGNFNLHGITAPQEygglglgylyHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
****NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGS****DKYLPKLISGEHVGALA*******SDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL****
MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL***
MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
**NFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ*
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MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9FS88412 Isovaleryl-CoA dehydrogen N/A no 1.0 0.817 0.851 1e-178
Q9SWG0409 Isovaleryl-CoA dehydrogen yes no 1.0 0.823 0.905 1e-177
Q9FS87401 Isovaleryl-CoA dehydrogen N/A no 1.0 0.840 0.866 1e-169
Q9JHI5424 Isovaleryl-CoA dehydrogen yes no 0.988 0.785 0.713 1e-140
Q5RBD5423 Isovaleryl-CoA dehydrogen yes no 0.988 0.787 0.701 1e-138
P26440423 Isovaleryl-CoA dehydrogen yes no 0.988 0.787 0.698 1e-137
P12007424 Isovaleryl-CoA dehydrogen yes no 0.988 0.785 0.695 1e-136
Q3SZI8426 Isovaleryl-CoA dehydrogen yes no 0.988 0.781 0.695 1e-136
P45867379 Acyl-CoA dehydrogenase OS yes no 0.988 0.878 0.429 4e-72
P45857379 Acyl-CoA dehydrogenase OS no no 0.991 0.881 0.413 1e-71
>sp|Q9FS88|IVD1_SOLTU Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 287/337 (85%), Positives = 315/337 (93%)

Query: 1   MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           MG+FNLHGITAP+EYGGL LGYLYHCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P
Sbjct: 76  MGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTP 135

Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
            QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA 
Sbjct: 136 DQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVAN 195

Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
           TL+VYAKTD  AGSKGITAFIIEK MPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENV
Sbjct: 196 TLIVYAKTDTTAGSKGITAFIIEKEMPGFSTAQKLDKLGMRGSDTCELVFENCFVPKENV 255

Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
           LGQEGKGVYV+MSGLDLERLVLAAGP+GIMQAC+D+V+PYVRQREQFGRP+GEFQ IQGK
Sbjct: 256 LGQEGKGVYVLMSGLDLERLVLAAGPVGIMQACMDIVIPYVRQREQFGRPIGEFQLIQGK 315

Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
            ADMYTALQSSRSYVY+VA+DCDNGK+DPKDC+G IL AAERATQV LQAIQCLGGNGY+
Sbjct: 316 LADMYTALQSSRSYVYAVAKDCDNGKIDPKDCSGTILLAAERATQVALQAIQCLGGNGYI 375

Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337
           NEY TGRLLRDAK+YEI AGTSEIRR++IGR L K Q
Sbjct: 376 NEYPTGRLLRDAKMYEIAAGTSEIRRLVIGRELFKHQ 412

Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 3EC: .EC: 8EC: .EC: 4
>sp|Q9SWG0|IVD_ARATH Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2 Back     alignment and function description
>sp|Q9FS87|IVD2_SOLTU Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1 Back     alignment and function description
>sp|Q5RBD5|IVD_PONAB Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|P26440|IVD_HUMAN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1 Back     alignment and function description
>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2 Back     alignment and function description
>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1 Back     alignment and function description
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=acdA PE=2 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
115461843409 Os05g0125500 [Oryza sativa Japonica Grou 1.0 0.823 0.902 0.0
357134886411 PREDICTED: isovaleryl-CoA dehydrogenase 0.997 0.817 0.901 0.0
326498703436 predicted protein [Hordeum vulgare subsp 0.997 0.770 0.892 0.0
413950112 477 hypothetical protein ZEAMMB73_407983 [Ze 0.997 0.704 0.883 1e-180
224106760420 predicted protein [Populus trichocarpa] 0.997 0.8 0.928 1e-180
356539122410 PREDICTED: isovaleryl-CoA dehydrogenase 1.0 0.821 0.928 1e-179
255570831406 acyl-CoA dehydrogenase, putative [Ricinu 0.994 0.825 0.934 1e-179
293332891407 uncharacterized protein LOC100382372 [Ze 0.997 0.825 0.883 1e-179
225435261405 PREDICTED: isovaleryl-CoA dehydrogenase 1.0 0.832 0.925 1e-179
194700346407 unknown [Zea mays] gi|195642912|gb|ACG40 0.997 0.825 0.883 1e-179
>gi|115461843|ref|NP_001054521.1| Os05g0125500 [Oryza sativa Japonica Group] gi|47900455|gb|AAT39231.1| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|57863927|gb|AAS90672.2| putative isovaleryl-CoA dehydrogenase [Oryza sativa Japonica Group] gi|113578072|dbj|BAF16435.1| Os05g0125500 [Oryza sativa Japonica Group] gi|215694715|dbj|BAG89906.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630047|gb|EEE62179.1| hypothetical protein OsJ_16966 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/337 (90%), Positives = 325/337 (96%)

Query: 1   MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           MG+FNLHG+TAP+EYGG+GLGY+YHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP
Sbjct: 73  MGDFNLHGLTAPEEYGGMGLGYMYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 132

Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
           AQK KYLPKLISGEHVGALAMSEPN+GSDVV MKCKA++VDGGY+INGNKMWCTNGP AQ
Sbjct: 133 AQKLKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAEKVDGGYVINGNKMWCTNGPSAQ 192

Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
           TLVVYAKTDI AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP+ENV
Sbjct: 193 TLVVYAKTDIAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPHENV 252

Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
           LG+EGKGVYVMMSGLDLERLVLAAGP+G+MQACLDV +PYVRQREQFGRP+GEFQFIQGK
Sbjct: 253 LGEEGKGVYVMMSGLDLERLVLAAGPIGLMQACLDVAVPYVRQREQFGRPIGEFQFIQGK 312

Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
            ADMYT+LQSSRS+VYSVARDCDNGKVD KDCAGVIL AAERATQV LQAIQCLGGNGY+
Sbjct: 313 LADMYTSLQSSRSFVYSVARDCDNGKVDRKDCAGVILFAAERATQVALQAIQCLGGNGYI 372

Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337
           NEY TGRLLRDAKL+EIGAGTSEIRRMIIGR L K++
Sbjct: 373 NEYPTGRLLRDAKLFEIGAGTSEIRRMIIGRELFKEE 409

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357134886|ref|XP_003569046.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326498703|dbj|BAK02337.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|413950112|gb|AFW82761.1| hypothetical protein ZEAMMB73_407983 [Zea mays] Back     alignment and taxonomy information
>gi|224106760|ref|XP_002314277.1| predicted protein [Populus trichocarpa] gi|222850685|gb|EEE88232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539122|ref|XP_003538049.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|255570831|ref|XP_002526368.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223534327|gb|EEF36039.1| acyl-CoA dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|293332891|ref|NP_001168588.1| uncharacterized protein LOC100382372 [Zea mays] gi|223949393|gb|ACN28780.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|225435261|ref|XP_002285017.1| PREDICTED: isovaleryl-CoA dehydrogenase 1, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|194700346|gb|ACF84257.1| unknown [Zea mays] gi|195642912|gb|ACG40924.1| isovaleryl-CoA dehydrogenase [Zea mays] gi|223947637|gb|ACN27902.1| unknown [Zea mays] gi|413942087|gb|AFW74736.1| isovaleryl-CoA dehydrogenase isoform 1 [Zea mays] gi|413942088|gb|AFW74737.1| isovaleryl-CoA dehydrogenase isoform 2 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2078302409 IVD "isovaleryl-CoA-dehydrogen 1.0 0.823 0.875 7.5e-160
DICTYBASE|DDB_G0279827415 ivdA "isovaleryl-CoA dehydroge 0.997 0.809 0.726 1.7e-128
MGI|MGI:1929242424 Ivd "isovaleryl coenzyme A deh 0.985 0.783 0.691 9.2e-123
UNIPROTKB|F1NF35424 IVD "Uncharacterized protein" 0.985 0.783 0.685 1.5e-122
UNIPROTKB|J3KR54426 IVD "Isovaleryl-CoA dehydrogen 0.985 0.779 0.676 3.6e-121
UNIPROTKB|P26440423 IVD "Isovaleryl-CoA dehydrogen 0.985 0.784 0.676 3.6e-121
UNIPROTKB|F1SSR4426 IVD "Uncharacterized protein" 0.985 0.779 0.676 9.5e-121
UNIPROTKB|Q3SZI8426 IVD "Isovaleryl-CoA dehydrogen 0.985 0.779 0.676 3.2e-120
UNIPROTKB|Q8EFR9389 liuA "Isovaleryl-CoA dehydroge 0.997 0.863 0.660 8.5e-120
TIGR_CMR|SO_1897389 SO_1897 "isovaleryl-CoA dehydr 0.997 0.863 0.660 8.5e-120
TAIR|locus:2078302 IVD "isovaleryl-CoA-dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
 Identities = 295/337 (87%), Positives = 313/337 (92%)

Query:     1 MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
             MG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ 
Sbjct:    73 MGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTA 132

Query:    61 AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
             AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+
Sbjct:   133 AQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAE 192

Query:   121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
             TLVVYAKTD KAGSKGITAFIIEKGM GFSTAQKLDKLGMRGSDTCELVFENCFVP EN+
Sbjct:   193 TLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPEENI 252

Query:   181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
             L +EGKGVYV+MSGLDLERLVLAAGPLGIMQACLD VLPY+RQREQFGRP+GEFQFIQGK
Sbjct:   253 LDKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDNVLPYIRQREQFGRPVGEFQFIQGK 312

Query:   241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
              ADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG ILCAAERATQV LQAIQCLGGNGY+
Sbjct:   313 VADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCAAERATQVALQAIQCLGGNGYI 372

Query:   301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337
             NEYATGRLLRDAKLYEIGAGTSEIRR++IGR L K++
Sbjct:   373 NEYATGRLLRDAKLYEIGAGTSEIRRIVIGRELFKEE 409
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008470 "isovaleryl-CoA dehydrogenase activity" evidence=ISS;IDA
GO:0005759 "mitochondrial matrix" evidence=IDA
GO:0006552 "leucine catabolic process" evidence=IMP;IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0009083 "branched-chain amino acid catabolic process" evidence=IMP
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
DICTYBASE|DDB_G0279827 ivdA "isovaleryl-CoA dehydrogenase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1929242 Ivd "isovaleryl coenzyme A dehydrogenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF35 IVD "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR54 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P26440 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSR4 IVD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZI8 IVD "Isovaleryl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EFR9 liuA "Isovaleryl-CoA dehydrogenase LiuA" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1897 SO_1897 "isovaleryl-CoA dehydrogenase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46703ACDP_MYCLE1, ., 3, ., 9, 9, ., -0.36550.97620.8457yesno
Q9JHI5IVD_MOUSE1, ., 3, ., 8, ., 40.71340.98810.7853yesno
P63427ACDP_MYCTU1, ., 3, ., 9, 9, ., -0.36250.97620.8457yesno
P52042ACDS_CLOAB1, ., 3, ., 8, ., 10.42980.99400.8839yesno
P63428ACDP_MYCBO1, ., 3, ., 9, 9, ., -0.36250.97620.8457yesno
P45867ACDA_BACSU1, ., 3, ., 9, 9, ., -0.42940.98810.8786yesno
Q06319ACDS_MEGEL1, ., 3, ., 8, ., 10.42350.92870.8172yesno
Q9SWG0IVD_ARATH1, ., 3, ., 8, ., 40.90501.00.8239yesno
Q9FS87IVD2_SOLTU1, ., 3, ., 8, ., 40.86641.00.8403N/Ano
Q9FS88IVD1_SOLTU1, ., 3, ., 8, ., 40.85161.00.8179N/Ano
Q3SZI8IVD_BOVIN1, ., 3, ., 8, ., 40.69550.98810.7816yesno
Q5RBD5IVD_PONAB1, ., 3, ., 8, ., 40.70140.98810.7872yesno
P12007IVD_RAT1, ., 3, ., 8, ., 40.69550.98810.7853yesno
P26440IVD_HUMAN1, ., 3, ., 8, ., 40.69850.98810.7872yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.990.983
3rd Layer1.3.99.100.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 0.0
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 0.0
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 1e-134
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 1e-126
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 1e-114
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 3e-93
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 3e-92
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-89
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 2e-79
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 1e-78
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 5e-74
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 1e-64
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 9e-57
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 8e-53
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 4e-51
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 7e-46
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 3e-45
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 1e-44
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 1e-36
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 2e-31
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 8e-30
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 8e-28
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 7e-23
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 2e-21
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 3e-18
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 4e-18
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 5e-17
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 7e-17
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 5e-16
PRK11561538 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; 8e-16
PTZ00457 520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 8e-15
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 1e-13
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 3e-12
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 2e-10
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 2e-10
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 2e-09
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 2e-05
PLN02312 680 PLN02312, PLN02312, acyl-CoA oxidase 5e-05
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information 
 Score =  724 bits (1871), Expect = 0.0
 Identities = 311/337 (92%), Positives = 328/337 (97%)

Query: 1   MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           MG+FNLHGITAP+EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVR+G+P
Sbjct: 68  MGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTP 127

Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
           AQK+KYLPKLISGEHVGALAMSEPN+GSDVV MKCKA+RVDGGY++NGNKMWCTNGPVAQ
Sbjct: 128 AQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQ 187

Query: 121 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 180
           TLVVYAKTD+ AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP ENV
Sbjct: 188 TLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENV 247

Query: 181 LGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK 240
           LGQEGKGVYVMMSGLDLERLVLAAGPLG+MQACLDVVLPYVRQREQFGRP+GEFQFIQGK
Sbjct: 248 LGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGK 307

Query: 241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 300
            ADMYT+LQSSRSYVYSVARDCDNGKVD KDCAGVILCAAERATQV LQAIQCLGGNGY+
Sbjct: 308 LADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYI 367

Query: 301 NEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 337
           NEY TGRLLRDAKLYEIGAGTSEIRRM+IGR L K++
Sbjct: 368 NEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKEE 404

Length = 404
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 337
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
KOG0137 634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
KOG0135 661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.97
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 99.93
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.91
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.86
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.82
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.72
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.6
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 99.5
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.33
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 97.67
PTZ00457520 acyl-CoA dehydrogenase; Provisional 92.47
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 88.94
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-73  Score=480.65  Aligned_cols=322  Identities=42%  Similarity=0.694  Sum_probs=313.5

Q ss_pred             CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707            1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA   80 (337)
Q Consensus         1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~   80 (337)
                      +.|.||+++-+|++|||.|.+......++|+|++.|+|++..+..|+.+...+|..||+++||++|+|.+. |+.+++++
T Consensus        77 ~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfA  155 (398)
T KOG0139|consen   77 LFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFA  155 (398)
T ss_pred             HhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceee
Confidence            35899999999999999999999999999999999999999999999899999999999999998888875 88899999


Q ss_pred             ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707           81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM  160 (337)
Q Consensus        81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~  160 (337)
                      +|||+.|||.....|+|++++|.|+|||+|+|+||+..||+++|++-+++..+.+++++|+||++.||+++..+.+++||
T Consensus       156 lSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGm  235 (398)
T KOG0139|consen  156 LSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGM  235 (398)
T ss_pred             ecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccc
Confidence            99999999999999999999999999999999999999999999999877788999999999999999999999999999


Q ss_pred             CCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 019707          161 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGK  240 (337)
Q Consensus       161 ~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~vq~~  240 (337)
                      |++.+|.+.||||+||++++||+++.|+.+....++-+|+..+++.+|++..++|+++.|+++|.+||.++.++|.+|++
T Consensus       236 RaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhq  315 (398)
T KOG0139|consen  236 RASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQ  315 (398)
T ss_pred             cccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCcccCC
Q 019707          241 TADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG  320 (337)
Q Consensus       241 la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~~~~g  320 (337)
                      ||++.+++|++|.++|++++.-+.+.|...+++|+|+++++.+..+++.|++++||.||+++.|.+|+|||++...|++|
T Consensus       316 iA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeG  395 (398)
T KOG0139|consen  316 IADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEG  395 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHH
Q 019707          321 TSE  323 (337)
Q Consensus       321 ~~~  323 (337)
                      +++
T Consensus       396 tsn  398 (398)
T KOG0139|consen  396 TSN  398 (398)
T ss_pred             CCC
Confidence            863

>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 1e-133
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 5e-67
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 1e-66
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 9e-65
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 4e-60
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 4e-58
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 6e-57
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 1e-55
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 3e-55
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 8e-54
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 2e-53
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 2e-51
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 9e-50
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 2e-49
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 2e-49
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 2e-49
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 3e-49
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 1e-48
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 1e-48
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 2e-48
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-48
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 3e-48
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 4e-48
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 3e-46
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 2e-40
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 1e-39
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 1e-39
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 4e-39
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 1e-36
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 4e-36
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 4e-36
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 6e-36
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 9e-36
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-35
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 7e-35
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 3e-25
3djl_A541 Crystal Structure Of Alkylation Response Protein E. 1e-19
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 4e-16
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 4e-15
3m9v_A439 X-Ray Structure Of A Kijd3 In Complex With Dtdp Len 3e-13
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 1e-12
3mxl_A395 Crystal Structure Of Nitrososynthase From Micromono 2e-10
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 4e-09
2c0u_A439 Crystal Structure Of A Covalent Complex Of Nitroalk 8e-07
3d9d_A438 Nitroalkane Oxidase: Mutant D402n Crystallized With 1e-06
2reh_A439 Mechanistic And Structural Analyses Of The Roles Of 1e-06
2zaf_A439 Mechanistic And Structural Analyses Of The Roles Of 1e-06
3d9g_A438 Nitroalkane Oxidase: Wild Type Crystallized In A Tr 1e-06
2c12_A439 Crystal Structure Of Nitroalkane Oxidase In Complex 1e-06
3d9f_A438 Nitroalkane Oxidase: Active Site Mutant S276a Cryst 2e-06
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 4e-04
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  470 bits (1210), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/335 (67%), Positives = 267/335 (79%), Gaps = 2/335 (0%)
Query: 1   MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct: 55  LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 114
Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
           AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct: 115 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 174
Query: 121 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 178
            L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct: 175 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 234
Query: 179 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 238
           N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA LD  +PY+  RE FG+ +G FQ +Q
Sbjct: 235 NILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ 294
Query: 239 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 298
           GK ADMYT L + R YVY+VA+ CD G    KDCAGVIL +AE ATQV L  IQC GGNG
Sbjct: 295 GKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNG 354
Query: 299 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 333
           Y+N++  GR LRDAKLYEIGAGTSE+RR++IGRA 
Sbjct: 355 YINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora Carbonacea Var. Africana Length = 395 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane Oxidase Trapped During Substrate Turnover Length = 439 Back     alignment and structure
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With 1-Nitrohexane Length = 438 Back     alignment and structure
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409 And Asp402 In The Reaction Of The Flavoprotein Nitroalkane Oxidase Length = 439 Back     alignment and structure
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped State Forming A Cyanoadduct With Fad Length = 438 Back     alignment and structure
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With Spermine, A Competitive Inhibitor Length = 439 Back     alignment and structure
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized With 1- Nitrohexane Length = 438 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 0.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 0.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 0.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 1e-177
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 1e-173
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 1e-163
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-154
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-153
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-153
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-152
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-152
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-151
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-151
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-150
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-150
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 1e-149
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 1e-148
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-144
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 1e-144
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-142
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 1e-141
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 1e-131
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-131
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 1e-129
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 1e-126
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 1e-124
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-123
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-122
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 1e-116
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 1e-71
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 9e-65
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 3e-60
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 4e-49
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 3e-48
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-42
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 5e-37
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 1e-30
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 3e-27
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 6e-25
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
 Score =  621 bits (1603), Expect = 0.0
 Identities = 234/338 (69%), Positives = 275/338 (81%), Gaps = 2/338 (0%)

Query: 1   MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           +GN  + GITAP +YGG GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct: 55  LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 114

Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
           AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct: 115 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 174

Query: 121 TLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 178
            L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct: 175 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 234

Query: 179 NVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 238
           N+LG E KGVYV+MSGLDLERLVLA GPLG+MQA LD  +PY+  RE FG+ +G FQ +Q
Sbjct: 235 NILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ 294

Query: 239 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 298
           GK ADMYT L + R YVY+VA+ CD G    KDCAGVIL +AE ATQV L  IQC GGNG
Sbjct: 295 GKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNG 354

Query: 299 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 336
           Y+N++  GR LRDAKLYEIGAGTSE+RR++IGRA    
Sbjct: 355 YINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD 392
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 100.0
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 95.35
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 85.52
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 84.07
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-66  Score=479.20  Aligned_cols=336  Identities=40%  Similarity=0.645  Sum_probs=320.1

Q ss_pred             CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707            1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA   80 (337)
Q Consensus         1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~   80 (337)
                      |++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+..|..++...|..+++++||++|+|++.+|+.+++++
T Consensus        47 l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a  126 (387)
T 2d29_A           47 LAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG  126 (387)
T ss_dssp             HHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEE
Confidence            46899999999999999999999999999999999999998888874467889999999999999999999999999999


Q ss_pred             ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCC----CCCCeEEEEEeCCCCCeeeccccc
Q 019707           81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLD  156 (337)
Q Consensus        81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~----~~~~~~~flvp~~~~Gv~~~~~~~  156 (337)
                      +|||+.|||...++|++++++|||+|||+|.|+||+..||+++|+++++++.    +++++++|+||++.|||++.++|+
T Consensus       127 ~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~  206 (387)
T 2d29_A          127 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEE  206 (387)
T ss_dssp             CCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCC
T ss_pred             eCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCCCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCccc
Confidence            9999999999999999999999999999999999999999999999986442    456899999999999999999999


Q ss_pred             cccCCCCcceeEEEceeeeCCCCcccCCCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcchH
Q 019707          157 KLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQF  236 (337)
Q Consensus       157 ~~g~~~~~~~~v~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~~~~~~a~~~G~~~~al~~a~~~~~~r~~~g~~~~~~~~  236 (337)
                      ++|+++++++++.||||+||++++|+.++.|+......+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.
T Consensus       207 ~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~  286 (387)
T 2d29_A          207 KLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEG  286 (387)
T ss_dssp             CSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHH
T ss_pred             ccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHH
Confidence            99999999999999999999999999999999888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhhhHHHHHHHHHHHHHHHHHHHhhCCCcccCcchHHHHHHhhccCc
Q 019707          237 IQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE  316 (337)
Q Consensus       237 vq~~la~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~r~~rd~~~~~  316 (337)
                      +|++|+++...++++|++++.+++.++.+.+....++++|.++++.+.++++.++|++||.||++++|++|+|||++...
T Consensus       287 vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~  366 (387)
T 2d29_A          287 VSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTR  366 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCcc
Confidence            99999999999999999999999999987766778999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHhc
Q 019707          317 IGAGTSEIRRMIIGRALLKQ  336 (337)
Q Consensus       317 ~~~g~~~~~~~~l~~~~~~~  336 (337)
                      +++|++++++..|++.++++
T Consensus       367 i~~G~~~i~~~~ia~~~l~~  386 (387)
T 2d29_A          367 IGEGTSEILKLVIARRLLEA  386 (387)
T ss_dssp             TTTSCHHHHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999875
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 337
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 3e-57
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 6e-45
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 2e-39
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 2e-39
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 5e-39
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 6e-39
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 8e-39
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 1e-38
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 2e-36
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 7e-35
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 1e-33
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 5e-33
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 7e-33
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 5e-32
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 3e-30
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 9e-30
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 8e-29
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 4e-28
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 4e-26
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 4e-24
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 6e-24
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 2e-23
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 2e-22
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 1e-19
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 1e-19
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (465), Expect = 3e-57
 Identities = 134/186 (72%), Positives = 158/186 (84%), Gaps = 2/186 (1%)

Query: 1   MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSP 60
           +GN  + GITAP +YGG GLGYL H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ 
Sbjct: 50  LGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNE 109

Query: 61  AQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 120
           AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A 
Sbjct: 110 AQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 169

Query: 121 TLVVYAKTDIKAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 178
            L+VYAKTD+ A   S+GITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P  
Sbjct: 170 VLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAA 229

Query: 179 NVLGQE 184
           N+LG E
Sbjct: 230 NILGHE 235
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query337
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.96
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.96
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.96
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.96
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.95
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.95
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.95
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.95
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.94
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.94
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.91
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.9
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.89
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 97.95
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-40  Score=281.49  Aligned_cols=183  Identities=38%  Similarity=0.602  Sum_probs=174.3

Q ss_pred             CccccccCCCCCccCCCCCCCHHHHHHHHHHHHhccCchhhHhhhhhhhHHHHHHhcCCHHHHhhhchhhhcCcceeEEE
Q 019707            1 MGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA   80 (337)
Q Consensus         1 l~~~Gl~~l~~p~~~GG~~~~~~~~~~~~e~la~~~~~~a~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~g~~~~~~~   80 (337)
                      |++.||+++.+|++|||.+.++.+.+.++|.+++.+.+++++...+. .+...+..+++++||++|++++.+|+.+++++
T Consensus        45 l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a  123 (227)
T d1ukwa2          45 LHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFA  123 (227)
T ss_dssp             HHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEE
T ss_pred             HHhhhhhhhccccccCcccccccccccchhhhccccccccccccccc-cchhhhhccCCHHHHHHhcccccccccccccc
Confidence            46899999999999999999999999999999999999988887776 78889999999999999999999999999999


Q ss_pred             ecCCCCCCCcCCcEeEEEEeCCeEEEeeeeEeeeCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeeeccccccccC
Q 019707           81 MSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGM  160 (337)
Q Consensus        81 ~te~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~flvp~~~~Gv~~~~~~~~~g~  160 (337)
                      +|||++|+|...++|+|++++|||+|||+|+|+|++..||+++|.|++.++++..++++|+||++.|||++.+.|+.+||
T Consensus       124 ~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~Ad~~~v~a~~~~~~~~~g~~~f~V~~~~~Gv~~~~~~~~~G~  203 (227)
T d1ukwa2         124 LSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQ  203 (227)
T ss_dssp             CCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSC
T ss_pred             ccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCccccchhhccccccCCccCcCCcEEEEEeCCCCceEeccccCcccC
Confidence            99999999999999999999999999999999999999999999999987666678999999999999999999999999


Q ss_pred             CCCcceeEEEceeeeCCCCcccCC
Q 019707          161 RGSDTCELVFENCFVPNENVLGQE  184 (337)
Q Consensus       161 ~~~~~~~v~f~~v~Vp~~~vl~~~  184 (337)
                      +++++++|.|+||+||++++||++
T Consensus       204 r~~~~~~v~f~~v~Vp~~~llGeE  227 (227)
T d1ukwa2         204 RASGTYELVFEDVKVPVENRLGEE  227 (227)
T ss_dssp             TTSCEEEEEEEEEEEEGGGEESCT
T ss_pred             CCCceEEEEEeeEEEcHHHccCCC
Confidence            999999999999999999999864
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure