Citrus Sinensis ID: 019709

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccEEEEEEEccccccccEEEEEEcccccccccccccHHHEEEEEEEcccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHcEEEEEEccc
Coil and Loop (DISEMBL)
mtscysrltagsaashsllqspkpspkapvscylrdhhanqrlpttllfrsskrnyyhnnsnyknnNVIYIVASAAaaersdgheaavgdlvdkrksgertvEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAgivtdemlsmpkapFVAVGLLEALAAATGMAAGAilsgasipilSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVasgsnpghslkgaGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFvympsstfsvkimgysv
Flexible Loop (DISEMBL)
MTSCYSRltagsaashsllqspkpsPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYhnnsnyknnnVIYIVASAAAAERSDGHEAAVgdlvdkrksgertvefnvisksndrrvEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFvympsstfsvkimgysv
Low Complexity Region (SEG)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFrsskrnyyhnnsnyknnnVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVavgllealaaatgmaagaILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Disordered region (IsUnstruct)
*******************************CYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAA************************VEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIM****
Disordered Region (DISOPRED)
***********************************************************************************************************SKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS************IFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Disordered Region (DISEMBL)
****************************PVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAA*********AAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Disordered Region (DISPRO)
*****SR****SAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRN***NNSNYKNNNVIYIVASAA*************************VE*NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSSTFSVKIMGYSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q9GSB0	473	Crt homolog 1 OS=Dictyost	yes	no	0.599	0.427	0.291	1e-12
Q55C66	478	Crt homolog 3 OS=Dictyost	no	no	0.534	0.376	0.291	3e-12
Q550A6	484	Crt homolog 2 OS=Dictyost	no	no	0.548	0.382	0.284	6e-12

>sp|Q9GSB0|CRTP1_DICDI Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHA 171
             + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++  Y  +  
Sbjct: 48  ETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAVTAYKIFFT 107

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             +  E    P   F  +G L+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 108 KDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 167

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  LV IG ++T    S  G S  G   FW+   ++S +  A   V K++
Sbjct: 168 KERYSLIQLGGA-LVIIGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGALSNVYKDI 226

Query: 292 IFLDAAQRLKGGVDLFVVNSYGSAFQVSF 320
            F   A      +D++ +  + S +Q  F
Sbjct: 227 GFQAVAD-----MDVWYLQYWDSLYQSIF 250

May regulate endogenous transporter.
Dictyostelium discoideum (taxid: 44689)

>sp|Q55C66|CRTP3_DICDI Crt homolog 3 OS=Dictyostelium discoideum GN=crtp3 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 95/182 (52%), Gaps = 2/182 (1%)

Query: 113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SILYLRYHA 171
             + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++ Y  Y  
Sbjct: 51  ETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAMWYKMYCT 110

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
             V  E  + P+  FV +GLL+A+     +  G   SG    +L+Q  + + ++ S IFL
Sbjct: 111 SDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTMIASFIFL 170

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
             RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A   V K++
Sbjct: 171 RERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGALSNVYKDI 229

Query: 292 IF 293
            F
Sbjct: 230 AF 231

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

>sp|Q550A6|CRTP2_DICDI Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 5/190 (2%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N ISK   +   +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct: 51  NSISK---QTATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQ 223
            LY       +  +  S P+  FV +G L+A+     +  G   +G    +L+Q+ + + 
Sbjct: 108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query: 224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
           +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct: 168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query: 284 ADTVLKEVIF 293
              V K + F
Sbjct: 227 FSNVYKAIGF 236

May regulate endogenous transporter.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
449444865	459	PREDICTED: crt homolog 2-like [Cucumis s	0.925	0.679	0.610	8e-90
359479254	453	PREDICTED: crt homolog 1-like [Vitis vin	0.635	0.472	0.837	9e-88
224103963	451	predicted protein [Populus trichocarpa]	0.916	0.685	0.618	6e-86
296083866	344	unnamed protein product [Vitis vinifera]	0.620	0.607	0.842	3e-85
356519872	426	PREDICTED: crt homolog 1-like [Glycine m	0.732	0.579	0.702	1e-83
356553645	438	PREDICTED: crt homolog 1-like [Glycine m	0.727	0.559	0.717	1e-81
356577341	428	PREDICTED: crt homolog 1-like [Glycine m	0.738	0.581	0.719	9e-81
357505093	432	hypothetical protein MTR_7g054190 [Medic	0.741	0.578	0.697	4e-79
21553716	447	unknown [Arabidopsis thaliana]	0.887	0.668	0.563	6e-79
18419900	447	CRT (chloroquine-resistance transporter)	0.887	0.668	0.563	7e-79

>gi|449444865|ref|XP_004140194.1| PREDICTED: crt homolog 2-like [Cucumis sativus] gi|449480984|ref|XP_004156047.1| PREDICTED: crt homolog 2-like [Cucumis sativus]

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 202/331 (61%), Positives = 239/331 (72%), Gaps = 19/331 (5%)

Query: 1   MTSCYSRLTAGSAA---SHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYY 57
           MTS   R +AG+A+      L Q P+  P+  VS Y  D   +      ++ R+ K    
Sbjct: 1   MTSWSHRFSAGTASFGGPFRLRQRPRSLPE--VSIYRNDDLRSGC--GCVILRAPK---- 52

Query: 58  HNNSNYKNNNVIYIVASAAAAERSDGHEAAVGDL----VDKRKSGE--RTVEFNVISKSN 111
           H        +  + ++ +   +R      AVGD     + + KSGE    +    + +S 
Sbjct: 53  HRRLEAVAPSGAWDLSDSGEEDRVKPCSYAVGDQRVEDLAEGKSGEILENIRAEKLRRS- 111

Query: 112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA 171
           DR+VEIV+AAA TV+ GV NRVLYKLALVPLKHYPFFLAQLATFGYV VYFSILYLRYHA
Sbjct: 112 DRKVEIVVAAASTVIFGVANRVLYKLALVPLKHYPFFLAQLATFGYVIVYFSILYLRYHA 171

Query: 172 GIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFL 231
           GIVTDEMLS PKAP++  GLLEAL AATGMAA AILSGASIP+LSQTFLVWQILLS IFL
Sbjct: 172 GIVTDEMLSTPKAPYIVAGLLEALGAATGMAAAAILSGASIPVLSQTFLVWQILLSTIFL 231

Query: 232 GRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEV 291
           GRRY+ +QLFGCF V IGVIITVASGSN G+SLK AGIFWSLLMI+SFL QAADTVLKE+
Sbjct: 232 GRRYKTSQLFGCFFVTIGVIITVASGSNAGNSLKEAGIFWSLLMIISFLFQAADTVLKEI 291

Query: 292 IFLDAAQRLKG-GVDLFVVNSYGSAFQVSFV 321
           IFLDA+++LKG  +DLFVVNS+GSAFQ  F+
Sbjct: 292 IFLDASRQLKGRTIDLFVVNSFGSAFQAVFI 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479254|ref|XP_002276436.2| PREDICTED: crt homolog 1-like [Vitis vinifera]

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 195/215 (90%), Gaps = 1/215 (0%)

Query: 110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRY 169
             DRR+++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY
Sbjct: 105 EGDRRMKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRY 164

Query: 170 HAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSII 229
           +AGIVTDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS I
Sbjct: 165 NAGIVTDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAI 224

Query: 230 FLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLK 289
           FLGRRY+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLK
Sbjct: 225 FLGRRYKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLK 284

Query: 290 EVIFLDAAQRLKGG-VDLFVVNSYGSAFQVSFVYM 323
           E IFL AA+RLKGG VDLFVVNSYGSAFQ  F+ +
Sbjct: 285 ERIFLKAAERLKGGSVDLFVVNSYGSAFQALFICL 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103963|ref|XP_002313263.1| predicted protein [Populus trichocarpa] gi|222849671|gb|EEE87218.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 212/343 (61%), Positives = 245/343 (71%), Gaps = 34/343 (9%)

Query: 1   MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNN 60
           MTSC+ RLT G        QS + S    +S  L+    NQ+    +L RSS R Y  + 
Sbjct: 1   MTSCFRRLTTGPTPPSGPAQSRQRSTADILSLPLKRISINQQ--PGILLRSS-RQYSRS- 56

Query: 61  SNYKNNNVIYIVASAAAAERSDGHEAA---------VGDLV--DKRKSGERTVEFN---V 106
                    +I+ +    +RS G   A         VGD       +S +RTVE N    
Sbjct: 57  ---------FIIEAVEPGDRSGGGNEAEKAGPCACLVGDQTVGGVVESIDRTVEINGKRT 107

Query: 107 ISKSN-----DRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVY 161
           IS S+     DR VE+ +AAAVTV+LGVGNRVLYKLAL+PLKHYPFFLAQLATFGYV VY
Sbjct: 108 ISGSDSRSKEDRAVEVAVAAAVTVVLGVGNRVLYKLALLPLKHYPFFLAQLATFGYVIVY 167

Query: 162 FSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLV 221
           F+IL++R+ AGIVTDEMLSMPKAP++ VGLLEAL AATGMAAGAILSGASIPILSQTFLV
Sbjct: 168 FTILHIRHRAGIVTDEMLSMPKAPYILVGLLEALGAATGMAAGAILSGASIPILSQTFLV 227

Query: 222 WQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLL 281
           WQILLS IFLGRRY+VNQL GCFLV +GVIITVASG + G SL+ AGIFWSLLM+ SF L
Sbjct: 228 WQILLSTIFLGRRYKVNQLLGCFLVAVGVIITVASGPSAG-SLREAGIFWSLLMMFSFFL 286

Query: 282 QAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQVSFVYM 323
           QAADTVLKEVIF DAA++LKGG VDLFV+NSYGSAFQ  FV +
Sbjct: 287 QAADTVLKEVIFSDAAKQLKGGSVDLFVINSYGSAFQALFVCL 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083866|emb|CBI24254.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIV 174
           +++VIAAA TV+LGVGNRVLYKLALVPLKHYPFFLAQLAT GYV VYFSIL LRY+AGIV
Sbjct: 1   MKVVIAAAFTVVLGVGNRVLYKLALVPLKHYPFFLAQLATVGYVLVYFSILSLRYNAGIV 60

Query: 175 TDEMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRR 234
           TDEMLS+PK P+VAVGLLEAL AATGMAAGAILSGASIPILSQ+FLVWQ+LLS IFLGRR
Sbjct: 61  TDEMLSLPKTPYVAVGLLEALGAATGMAAGAILSGASIPILSQSFLVWQLLLSAIFLGRR 120

Query: 235 YRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFL 294
           Y+VNQL GCFLV IGVIITVASGS+ G SLKGAGIFWSLLM+VSFL QAADTVLKE IFL
Sbjct: 121 YKVNQLLGCFLVAIGVIITVASGSSAGASLKGAGIFWSLLMMVSFLFQAADTVLKERIFL 180

Query: 295 DAAQRLKGG-VDLFVVNSYGSAFQVSFVYM 323
            AA+RLKGG VDLFVVNSYGSAFQ  F+ +
Sbjct: 181 KAAERLKGGSVDLFVVNSYGSAFQALFICL 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519872|ref|XP_003528593.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/252 (70%), Positives = 199/252 (78%), Gaps = 5/252 (1%)

Query: 73  ASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNR 132
           A    A    G +  V      R  G    E     +S +R  E+++AAAVTV++G GNR
Sbjct: 49  AKCGGAWERSGEKKVVAP--RPRSVGRFAAESG--RESGNRLAEVMLAAAVTVVMGAGNR 104

Query: 133 VLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLL 192
           VLYKLALVPL++YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGLL
Sbjct: 105 VLYKLALVPLRNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGLL 164

Query: 193 EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII 252
           EAL AATGMAAGA+LSGASIPILSQ FLVWQILLS  FLGRRY+VNQL GC LV IGVI+
Sbjct: 165 EALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYFFLGRRYKVNQLVGCSLVAIGVIL 224

Query: 253 TVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNS 311
           TV SGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA Q+LKGG +D+FVVNS
Sbjct: 225 TVVSGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATQKLKGGSLDMFVVNS 284

Query: 312 YGSAFQVSFVYM 323
           +GSAFQ  F+ +
Sbjct: 285 FGSAFQALFICL 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553645|ref|XP_003545164.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 180/251 (71%), Positives = 206/251 (82%), Gaps = 6/251 (2%)

Query: 78  AERSDGHEAAVGDL---VDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVL 134
           ++   G E  VG     V+ R+  E     + +  S +R VE+  AA  TV+LGVGNRVL
Sbjct: 55  SDDVGGREEKVGPCSYAVEDRRVAEDGGS-DAVVGSRNRVVEVAAAAVATVVLGVGNRVL 113

Query: 135 YKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA 194
           YKLALVPLKHYPFFLAQLATFGYV VYF+ILY+R+HAGIVTDEML  PKAPF+ VGLLEA
Sbjct: 114 YKLALVPLKHYPFFLAQLATFGYVIVYFAILYIRHHAGIVTDEMLDAPKAPFIVVGLLEA 173

Query: 195 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV 254
           LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRY+VNQL GCFLV IGV++TV
Sbjct: 174 LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYKVNQLLGCFLVTIGVVVTV 233

Query: 255 ASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG--VDLFVVNSY 312
           ASG+  G+ LK  G+FWSLLMIVSF LQAADTVLKE+IFLD++++LKGG  +DLFVVNSY
Sbjct: 234 ASGAGAGNLLKEGGMFWSLLMIVSFFLQAADTVLKEIIFLDSSRKLKGGCCMDLFVVNSY 293

Query: 313 GSAFQVSFVYM 323
           GSAFQ  FV +
Sbjct: 294 GSAFQALFVCL 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577341|ref|XP_003556785.1| PREDICTED: crt homolog 1-like [Glycine max]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 182/253 (71%), Positives = 205/253 (81%), Gaps = 4/253 (1%)

Query: 72  VASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGN 131
           V    A +RS   +AAV      R      +      +S +R  E+V+AAAVTV++G GN
Sbjct: 49  VKCGGAWKRSGEKKAAVAA---PRPCAVGRLAAESGRESGNRSAEVVLAAAVTVVMGAGN 105

Query: 132 RVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGL 191
           RVLYKLALVPLK+YPFFLAQLATFGYV VYFSILY+RY AGIVTDEMLS+PK PF+ VGL
Sbjct: 106 RVLYKLALVPLKNYPFFLAQLATFGYVIVYFSILYIRYRAGIVTDEMLSVPKTPFLVVGL 165

Query: 192 LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVI 251
           LEAL AATGMAAGA+LSGASIPILSQ FLVWQILLS IFLGRRY+VNQL GCFLV IGVI
Sbjct: 166 LEALGAATGMAAGAMLSGASIPILSQAFLVWQILLSYIFLGRRYKVNQLVGCFLVAIGVI 225

Query: 252 ITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVN 310
           +TVASGS  GHSLK AGIFWSLLMIVSFL QAADTVLKEVIFLDA ++LKGG +D+FVVN
Sbjct: 226 LTVASGSGAGHSLKEAGIFWSLLMIVSFLFQAADTVLKEVIFLDATRKLKGGSLDMFVVN 285

Query: 311 SYGSAFQVSFVYM 323
           S+GSAFQ  F+ +
Sbjct: 286 SFGSAFQALFICL 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505093|ref|XP_003622835.1| hypothetical protein MTR_7g054190 [Medicago truncatula] gi|355497850|gb|AES79053.1| hypothetical protein MTR_7g054190 [Medicago truncatula]

 Score =  301 bits (770), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 182/261 (69%), Positives = 208/261 (79%), Gaps = 11/261 (4%)

Query: 64  KNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIAAAV 123
           +    I +V ++ A ERSD  E       D++K   R VE N   KS ++ V++V+AAA 
Sbjct: 49  RRRTWIPVVEASGARERSDVSEE------DEKK---RIVEDNC-RKSENQTVKVVVAAAA 98

Query: 124 TVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK 183
             + GVGNRVLYKLALVPLK YPFFLAQ +TF YV VYFSILY+RY AGIVTDEML++PK
Sbjct: 99  VGVFGVGNRVLYKLALVPLKQYPFFLAQFSTFVYVIVYFSILYIRYRAGIVTDEMLAVPK 158

Query: 184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGC 243
            PF+ VGLLEAL AATGMAAGA+LSGASIPILSQTFLVWQILLS IFLGRRY+VNQL GC
Sbjct: 159 TPFLIVGLLEALGAATGMAAGAMLSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGC 218

Query: 244 FLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG 303
           FLV IGVIITVASGS  G SL+ AGIFWSLLM+VSFL QAADTVLKEVIF DA Q+LKGG
Sbjct: 219 FLVAIGVIITVASGSGAGKSLQEAGIFWSLLMMVSFLFQAADTVLKEVIFSDATQKLKGG 278

Query: 304 -VDLFVVNSYGSAFQVSFVYM 323
            +DLFVVNS+GSAFQ  F+ +
Sbjct: 279 SLDLFVVNSFGSAFQALFICL 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553716|gb|AAM62809.1| unknown [Arabidopsis thaliana]

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 182/323 (56%), Positives = 219/323 (67%), Gaps = 24/323 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLKGG-VDLFVVNSYGSAFQV 318
            +RLKG  +DLFVVNSYGS FQV
Sbjct: 285 KKRLKGASLDLFVVNSYGSIFQV 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419900|ref|NP_568373.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana] gi|115646756|gb|ABJ17107.1| At5g19380 [Arabidopsis thaliana] gi|332005310|gb|AED92693.1| CRT (chloroquine-resistance transporter)-like transporter 1 [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 182/323 (56%), Positives = 219/323 (67%), Gaps = 24/323 (7%)

Query: 2   TSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFRSSKRNYYHNNS 61
           T+   RL AG  AS   ++S   +P   VS   R+   N   P  L  RSS+R+      
Sbjct: 3   TTSSDRLIAGLTASIGSIESRYANPAQSVSLICRNQ-INGAPPIVL--RSSRRSR----- 54

Query: 62  NYKNNNVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEF-----NVISKSNDRRVE 116
                  ++++ +   A+  +G     GD  D +KS  R         + ++  +DR +E
Sbjct: 55  -------LWLIEAIPPAKSWNGSND--GD-EDIKKSDTRNYAIGGTGGHAVAGKDDRTME 104

Query: 117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTD 176
           IVIAAA T  LGVGNRVLYKLAL+PLK YPFFLAQL+TFGYVAVYFSILY RY AGIVT 
Sbjct: 105 IVIAAATTAALGVGNRVLYKLALIPLKQYPFFLAQLSTFGYVAVYFSILYFRYRAGIVTK 164

Query: 177 EMLSMPKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYR 236
           EMLS+PK PF+ VG+LE+LA A GMAA + LSG S  +LSQTFLVWQIL SIIFLGRRYR
Sbjct: 165 EMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLSQTFLVWQILFSIIFLGRRYR 224

Query: 237 VNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDA 296
           +NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+ SFLLQ ADTV+KEVIFLD+
Sbjct: 225 INQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMVFSFLLQGADTVMKEVIFLDS 284

Query: 297 AQRLKGG-VDLFVVNSYGSAFQV 318
            +RLKG  +DLFVVNSYGS FQV
Sbjct: 285 KKRLKGASLDLFVVNSYGSIFQV 307

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2150250	507	CLT1 "CRT (chloroquine-resista	0.480	0.319	0.656	2e-69
TAIR|locus:2177008	452	CLT3 "CRT (chloroquine-resista	0.910	0.679	0.493	5.6e-68
TAIR|locus:2136032	431	CLT2 "CRT (chloroquine-resista	0.658	0.515	0.471	1.2e-51
DICTYBASE|DDB_G0276943	473	crtp1 "chloroquine resistance	0.614	0.437	0.267	4.1e-11
DICTYBASE|DDB_G0270204	478	crtp3 "chloroquine resistance	0.551	0.389	0.264	2.1e-10
DICTYBASE|DDB_G0277321	484	crtp2 "chloroquine resistance	0.548	0.382	0.263	2.9e-10

TAIR|locus:2150250 CLT1 "CRT (chloroquine-resistance transporter)-like transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
 Identities = 107/163 (65%), Positives = 119/163 (73%)

Query:   157 YVAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILS 216
             YVAVYFSILY RY AGIVT EMLS+PK PF+                   LSG S  +LS
Sbjct:   205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264

Query:   217 QTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI 276
             QTFLVWQIL SIIFLGRRYR+NQ+ GC LV  GVI++VASGS   HS K  GI WSLLM+
Sbjct:   265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324

Query:   277 VSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYGSAFQV 318
              SFLLQ ADTV+KEVIFLD+ +RLKG  +DLFVVNSYGS FQV
Sbjct:   325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQV 367

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2177008 CLT3 "CRT (chloroquine-resistance transporter)-like transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 157/318 (49%), Positives = 197/318 (61%)

Query:     1 MTSCYSRLTAGSAASHSLLQSPKPSPKAPVSCYLRDHHANQRLPTTLLFXXXXXXXXXXX 60
             M +   R T G  AS + ++S   +    +S  +R +H + RLP  L+            
Sbjct:     1 MATTSRRFTTGLFASITSVKSHSANRPQSISL-IRRNHIDHRLP--LIVPSSRRWIIQAA 57

Query:    61 XXXXXXXVIYIVASAAAAERSDGHEAAVGDLVDKRKSGERTVEFNVISKSNDRRVEIVIA 120
                      +   + A  ++   +  A+GD  +   S   TV  +VI   + +  EIVI 
Sbjct:    58 RSWDG----FDDGAEAEIKKPGAYGYAIGDN-EIEGSSSSTV--HVIDGEHVKTAEIVIW 110

Query:   121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLS 180
             AAVT   GVGNRV+YKLALVPLK YPFFLAQL+TFGYVAVY++ILY RY AG VTD MLS
Sbjct:   111 AAVTAAFGVGNRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLS 170

Query:   181 MPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL 240
             +PK+PF+                   LSG S  +LSQTFLVWQI  SIIFLGRRY VNQ+
Sbjct:   171 VPKSPFLIVGILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQI 230

Query:   241 FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRL 300
              GC LV +GVI++VASGS   HSL  AG+ W LLM++SFLLQ A TVLKEVIF+D+ +RL
Sbjct:   231 LGCTLVALGVIVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRL 290

Query:   301 KGG-VDLFVVNSYGSAFQ 317
             KG  +DLF+VNSYGSAFQ
Sbjct:   291 KGASLDLFIVNSYGSAFQ 308

GO:0009507 "chloroplast" evidence=ISM

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

TAIR|locus:2136032 CLT2 "CRT (chloroquine-resistance transporter)-like transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 107/227 (47%), Positives = 146/227 (64%)

Query:    98 GERTVEFNVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGY 157
             G  T E ++ S  N     IV  + V V L V NRVLYKLALVP+K YPFF+AQL TFGY
Sbjct:    79 GASTEESSIPSNRN----LIVANSVVIVALAVANRVLYKLALVPMKQYPFFMAQLTTFGY 134

Query:   158 VAVYFSILYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQ 217
             V +YF+ILY R   GIVT+EM+ +PK  F                   +L G  IPIL+Q
Sbjct:   135 VLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIGFLEALGVATGMAAAAMLPGPVIPILNQ 194

Query:   218 TFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIV 277
             T+LVWQ+L +++ LGRR+ +NQ+ GC LV +GV++ V+SGS    +L G G  W  +++ 
Sbjct:   195 TYLVWQLLFALLILGRRFLLNQIAGCLLVAVGVVVAVSSGSGADTTLSGIGFLWPAVLVA 254

Query:   278 SFLLQAADTVLKEVIFLDAAQRLKG-GVDLFVVNSYGSAFQVSFVYM 323
             S   QA  +++KE +F DAA+RL+G  +D+FVVNS+GS FQ  FV++
Sbjct:   255 SAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVVNSFGSGFQALFVFL 301

GO:0009507 "chloroplast" evidence=IDA

GO:0002229 "defense response to oomycetes" evidence=IGI

GO:0009536 "plastid" evidence=IDA

GO:0034635 "glutathione transport" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IMP

DICTYBASE|DDB_G0276943 crtp1 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 178 (67.7 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 58/217 (26%), Positives = 94/217 (43%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N +SK     + I+I   + V  GV N VL K  +    +Y FFL+QL  FGYV ++ ++
Sbjct:    43 NSMSKET---ITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLTNFGYVPIFGAV 99

Query:   165 L-YLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
               Y  +    +  E    P   F                     SG    +L+Q  + + 
Sbjct:   100 TAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQQLLNQAIIPFT 159

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             ++ S IFL  RY + QL G  ++ IG ++T    S  G S  G   FW+   ++S +  A
Sbjct:   160 MIASFIFLKERYSLIQLGGALVI-IGGVVTSLIPSLLGGSSGGNKPFWNFFYLLSVIPGA 218

Query:   284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSF 320
                V K++ F   A      +D++ +  + S +Q  F
Sbjct:   219 LSNVYKDIGFQAVAD-----MDVWYLQYWDSLYQSIF 250

GO:0012506 "vesicle membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0270204 crtp3 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 50/189 (26%), Positives = 90/189 (47%)

Query:   107 ISKSNDRR-VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYF-SI 164
             + KS  +  + I+I   + ++ GV N VL K  ++   +Y FFL+Q+  +GY+ ++  ++
Sbjct:    44 LKKSMTKETLPILIYVLLYIISGVINVVLLKKLMIKFVNYGFFLSQITNYGYLPIFLVAM 103

Query:   165 LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQI 224
              Y  Y    V  E  + P+  FV                    SG    +L+Q  + + +
Sbjct:   104 WYKMYCTSDVPKETRNFPQYKFVIMGLLDAINGFFVVIGGVSTSGPLQQLLNQAIIPFTM 163

Query:   225 LLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAA 284
             + S IFL  RY + QL G  ++  GVI+++   S  G S  G  +F++   ++S +  A 
Sbjct:   164 IASFIFLRERYSLFQLGGAAVILGGVIVSLIP-SLVGGSSGGNILFYNFFYLISVIPGAL 222

Query:   285 DTVLKEVIF 293
               V K++ F
Sbjct:   223 SNVYKDIAF 231

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0277321 crtp2 "chloroquine resistance transporter-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 50/190 (26%), Positives = 88/190 (46%)

Query:   105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
             N ISK       +++   + +L GV N +L K  +    +Y FFL QL  +GYV ++ +I
Sbjct:    51 NSISKQT---ATVLVYVVLYILSGVINSLLLKKVMNVFTNYGFFLNQLTNYGYVPIFGAI 107

Query:   165 -LYLRYHAGIVTDEMLSMPKAPFVXXXXXXXXXXXXXXXXXXILSGASIPILSQTFLVWQ 223
              LY       +  +  S P+  FV                    +G    +L+Q+ + + 
Sbjct:   108 VLYKILFTNDIPKDTRSFPQWKFVIMGALDAVTGYFVVIGGIKTTGPLQQLLNQSVIPFT 167

Query:   224 ILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA 283
             +LLS IFL  RY + QL G  ++  GV++++      G++  G  +F++   ++S +  A
Sbjct:   168 MLLSFIFLKERYSLIQLGGALIIIGGVVVSLIPSLTGGNT-SGNMLFYNFFYLISMIPYA 226

Query:   284 ADTVLKEVIF 293
                V K + F
Sbjct:   227 FSNVYKAIGF 236


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      337       301   0.00096  115 3  11 22  0.45    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  180 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.89u 0.15s 22.04t   Elapsed:  00:00:01
  Total cpu time:  21.89u 0.15s 22.04t   Elapsed:  00:00:01
  Start:  Fri May 10 03:03:18 2013   End:  Fri May 10 03:03:19 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam08627	130	pfam08627, CRT-like, CRT-like	4e-05

>gnl|CDD|117200 pfam08627, CRT-like, CRT-like

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 105 NVISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSI 164
           N +SK     + I+I   + ++ GV N VL K  +    +Y FFL+QL  +GYV ++ + 
Sbjct: 49  NSMSKET---LTILIYVVLYIISGVINSVLLKKVMNKFTNYGFFLSQLTNYGYVPIFGAA 105

Query: 165 -LYLRYHAGIVTDEMLSMPKAPFV 187
             Y  Y    +  E  + P+  FV
Sbjct: 106 MWYKIYFTSDIPKETRNFPQYKFV 129

This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.96
KOG2766	336	consensus Predicted membrane protein [Function unk	99.92
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.9
PF08627	130	CRT-like: CRT-like; InterPro: IPR013936 This regio	99.78
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.68
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.61
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.17
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.16
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.99
KOG1581	327	consensus UDP-galactose transporter related protei	98.75
PLN00411	358	nodulin MtN21 family protein; Provisional	98.7
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.47
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.42
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.36
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.31
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.22
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.18
KOG2765	416	consensus Predicted membrane protein [Function unk	98.17
PRK11689	295	aromatic amino acid exporter; Provisional	98.09
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.06
PRK11272	292	putative DMT superfamily transporter inner membran	98.04
PRK15430	296	putative chloramphenical resistance permease RarD;	98.03
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.99
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.92
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.9
KOG1582	367	consensus UDP-galactose transporter related protei	97.65
KOG1580	337	consensus UDP-galactose transporter related protei	97.41
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.38
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.33
COG2510	140	Predicted membrane protein [Function unknown]	97.23
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.11
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.04
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.86
KOG1443	349	consensus Predicted integral membrane protein [Fun	96.67
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.64
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.37
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.08
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.93
KOG2922	335	consensus Uncharacterized conserved protein [Funct	95.39
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.34
PRK10532	293	threonine and homoserine efflux system; Provisiona	94.97
PLN00411	358	nodulin MtN21 family protein; Provisional	94.91
PRK11689	295	aromatic amino acid exporter; Provisional	94.86
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.24
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.12
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	93.73
PRK11272	292	putative DMT superfamily transporter inner membran	93.32
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.32
PRK15430	296	putative chloramphenical resistance permease RarD;	93.1
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	92.73
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	92.68
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	92.64
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	90.95
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	89.9
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	89.18
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	88.0
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	87.18
PRK10650	109	multidrug efflux system protein MdtI; Provisional	84.78
PF12398	42	DUF3660: Receptor serine/threonine kinase ; InterP	84.21
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	82.89
PRK09541	110	emrE multidrug efflux protein; Reviewed	81.84
PF15169	187	DUF4564: Domain of unknown function (DUF4564)	81.83
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	80.67

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.96  E-value=4.3e-30  Score=251.00  Aligned_cols=190  Identities=23%  Similarity=0.203  Sum_probs=162.6

Q ss_pred             hhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHHHHhhhccc
Q 019709          128 GVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAGAIL  207 (337)
Q Consensus       128 G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~~~L~viA~~yt  207 (337)
                      ..+|.....+..+ -.|.|.|++.+..+...++|.+++.+|+..++.. ++.+.|+|+|+++|++|+++|++.++|++||
T Consensus        26 ~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~-~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   26 TGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWL-KVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccch-hhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445555555555 7799999998888888889999888887554433 4677899999999999999999999999999


Q ss_pred             cccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCC--CCCCcchHHHHHHHHHhHHHHHH
Q 019709          208 SGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH--SLKGAGIFWSLLMIVSFLLQAAD  285 (337)
Q Consensus       208 sgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~--s~~~~~vlw~lL~llS~ip~AlS  285 (337)
                      +.++.|+|+|++|||++++|++|||+||++.|++|+++|++|+++++.+|..+++  ..++++++||+++++|+++||++
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~  183 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVS  183 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999754432  34688999999999999999999


Q ss_pred             HHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHHhhhcc
Q 019709          286 TVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSST  327 (337)
Q Consensus       286 nV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~lllPi  327 (337)
                      ||+||+.++|        .|...+.|+.++|++++....+.+
T Consensus       184 nV~~E~~v~~--------~~~~~~lg~~Glfg~ii~~iq~~i  217 (334)
T PF06027_consen  184 NVLEEKLVKK--------APRVEFLGMLGLFGFIISGIQLAI  217 (334)
T ss_pred             HHHHHHhccc--------CCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998765        456678899999999877655543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.92  E-value=2.5e-27  Score=223.02  Aligned_cols=185  Identities=19%  Similarity=0.169  Sum_probs=160.4

Q ss_pred             HHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHHHHhhh
Q 019709          125 VLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAATGMAAG  204 (337)
Q Consensus       125 Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~~~L~viA~  204 (337)
                      =++.++|....-.+..+--|-|-+++.+......++|.+++.+|.       ...+..|++|+++|+.|+++|++++.|+
T Consensus        27 SL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-------~~~~~~~~hYilla~~DVEaNy~vV~Ay   99 (336)
T KOG2766|consen   27 SLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR-------KYIKAKWRHYILLAFVDVEANYFVVKAY   99 (336)
T ss_pred             HHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh-------HHHHHHHHHhhheeEEeecccEEEeeeh
Confidence            344556666666666777899999988888888899999998875       1244567789999999999999999999


Q ss_pred             ccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCC-CCCCcchHHHHHHHHHhHHHH
Q 019709          205 AILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGAGIFWSLLMIVSFLLQA  283 (337)
Q Consensus       205 ~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~-s~~~~~vlw~lL~llS~ip~A  283 (337)
                      +||+.++.++|+||.||+.+++||+|||.||++.|+.|+++|++|+++++.||-.+|+ +.++|++.||.++++|+.+||
T Consensus       100 QyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYa  179 (336)
T KOG2766|consen  100 QYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYA  179 (336)
T ss_pred             hhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeee
Confidence            9999999999999999999999999999999999999999999999999999765543 357999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHHhh
Q 019709          284 ADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMP  324 (337)
Q Consensus       284 lSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~ll  324 (337)
                      +|||.||++.|+        .|..++.++.++|+.++..+=
T Consensus       180 VSNv~EEflvkn--------~d~~elm~~lgLfGaIIsaIQ  212 (336)
T KOG2766|consen  180 VSNVSEEFLVKN--------ADRVELMGFLGLFGAIISAIQ  212 (336)
T ss_pred             eccccHHHHHhc--------CcHHHHHHHHHHHHHHHHHHH
Confidence            999999998754        787888888888888877654

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.90  E-value=3e-23  Score=197.55  Aligned_cols=209  Identities=18%  Similarity=0.218  Sum_probs=174.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhC------CCCChhHHHHHHhhhhHHHHHHHHHHHHHh---cCccc-------hhhhcCC
Q 019709          119 IAAAVTVLLGVGNRVLYKLALV------PLKHYPFFLAQLATFGYVAVYFSILYLRYH---AGIVT-------DEMLSMP  182 (337)
Q Consensus       119 i~~i~~Vi~G~~N~Vl~Kl~~~------~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~---~~~it-------~em~~~p  182 (337)
                      ++.+.||+.|+.|+++.|-+.+      |.+++|+.++..+.++...+++...++|.+   .|...       ++.-.+.
T Consensus         6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~   85 (372)
T KOG3912|consen    6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN   85 (372)
T ss_pred             hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence            4678899999999999999876      567999999999998887766555544432   22222       1112344


Q ss_pred             CccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCC--
Q 019709          183 KAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP--  260 (337)
Q Consensus       183 k~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~--  260 (337)
                      +.-|+.+++||++|+.+++.|+.+|+.+++||++++.|.|+-++|.-||+++.+..||+|.+.+..|+++++.++-..  
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~  165 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT  165 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999885322  


Q ss_pred             -CCCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHH-HHHHHhhhcccccccc
Q 019709          261 -GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQ-VSFVYMPSSTFSVKIM  333 (337)
Q Consensus       261 -g~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ-~l~~~lllPi~slp~~  333 (337)
                       .-.+.++.+.|++++++++++-|+|.|+|||.+++      ..+|+....||++.|+ .+++.|+.|+.++|.=
T Consensus       166 ~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~------~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~  234 (372)
T KOG3912|consen  166 DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKK------SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG  234 (372)
T ss_pred             CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhh------ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence             11244788999999999999999999999997654      3699999999999999 7778899999999863

>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT)

Probab=99.78  E-value=2.1e-19  Score=152.86  Aligned_cols=82  Identities=40%  Similarity=0.725  Sum_probs=77.1

Q ss_pred             cccccccchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHH-HHhcCccchhhhcCCCcc
Q 019709          107 ISKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYL-RYHAGIVTDEMLSMPKAP  185 (337)
Q Consensus       107 ~~~~~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~-r~~~~~it~em~~~pk~k  185 (337)
                      ..+-.+++++++++++++|+.|++|+|++|+++++|.||+||++|+++++|+++||+++++ +|+.+.||+||+++|+||
T Consensus        48 k~s~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt~gyvpIffaV~lyk~y~t~~It~Emr~FPkyK  127 (130)
T PF08627_consen   48 KQSYSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTTFGYVPIFFAVVLYKMYFTGDITKEMRAFPKYK  127 (130)
T ss_pred             HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcccceehHHHHHHHHHHHHcCCCCHHHHhCcccc
Confidence            4556799999999999999999999999999999999999999999999999999998865 689999999999999999


Q ss_pred             chH
Q 019709          186 FVA  188 (337)
Q Consensus       186 f~i  188 (337)
                      |++
T Consensus       128 FaI  130 (130)
T PF08627_consen  128 FAI  130 (130)
T ss_pred             ccC
Confidence            985

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.68  E-value=1.9e-16  Score=151.32  Aligned_cols=193  Identities=22%  Similarity=0.270  Sum_probs=145.8

Q ss_pred             HHHHHhhhhhHHHHHHHhC-CCCC-hhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHHH
Q 019709          122 AVTVLLGVGNRVLYKLALV-PLKH-YPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAAT  199 (337)
Q Consensus       122 i~~Vi~G~~N~Vl~Kl~~~-~~~n-Yp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~~~L  199 (337)
                      .+.......|-++.+.... +.++ ||.|++.++...+.++-+.......     .++..+.|.++|++++++|..+..+
T Consensus         6 ~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   80 (303)
T PF08449_consen    6 AGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-----FPKSRKIPLKKYAILSFLFFLASVL   80 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-----ccCCCcChHHHHHHHHHHHHHHHHH
Confidence            3334444455555555444 4445 8999999888777765443332221     2344667888999999999999999


Q ss_pred             HHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCC---CCCcchHHHHHHH
Q 019709          200 GMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS---LKGAGIFWSLLMI  276 (337)
Q Consensus       200 ~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s---~~~~~vlw~lL~l  276 (337)
                      ...|..|+|.+.+++++.+.++++|+++++++||||+..||++++++++|+++...++....+.   ...+...|.++++
T Consensus        81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~  160 (303)
T PF08449_consen   81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLL  160 (303)
T ss_pred             HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876433221   2233445999999


Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHHhhh
Q 019709          277 VSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPS  325 (337)
Q Consensus       277 lS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~lll  325 (337)
                      +|.+++|+.+++||+++++|      +.+.+....+.++|..++..+..
T Consensus       161 ~sl~~~a~~~~~qe~~~~~~------~~~~~~~mfy~n~~~~~~~~~~~  203 (303)
T PF08449_consen  161 LSLLLDAFTGVYQEKLFKKY------GKSPWELMFYTNLFSLPFLLILL  203 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHh------CCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875      34445555555666554444333

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.61  E-value=3.1e-16  Score=147.38  Aligned_cols=138  Identities=22%  Similarity=0.280  Sum_probs=120.4

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCC---
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP---  260 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~---  260 (337)
                      +++++|+++|++.|.+.+.|+.+++++.+|+++|+-|++|+++|+++||||.+..||++.++.++|++++..++...   
T Consensus        18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~   97 (244)
T PF04142_consen   18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN   97 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999988864322   


Q ss_pred             -CCC------CCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHHhhhcc
Q 019709          261 -GHS------LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSST  327 (337)
Q Consensus       261 -g~s------~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~lllPi  327 (337)
                       ++.      ...+.+.|.+++++++++.|++.||+|+++|+.      +.+++.-|.+-++|..++.++..++
T Consensus        98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~------~~s~~~~N~qL~~~gi~~~~~~~~~  165 (244)
T PF04142_consen   98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS------NVSLWIQNMQLYLFGILFNLLALLL  165 (244)
T ss_pred             ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHhc
Confidence             111      134568889999999999999999999987652      3888888999999998888777544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.17  E-value=2.7e-10  Score=108.29  Aligned_cols=187  Identities=12%  Similarity=0.066  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHH
Q 019709          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEAL  195 (337)
Q Consensus       116 ~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal  195 (337)
                      +...+++..-.+....+++.|...+. .++|.+++.++...-.++...  .++....+ .++.....+++.+.+|++-+.
T Consensus         2 ~~~~~~~~w~~~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~   77 (302)
T TIGR00817         2 QTGLLFGLWYFLNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLL--SWSSGLPK-RLKISSALLKLLLPVAIVHTI   77 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHH--HHHhCCCC-CCCCCHHHHHHHHHHHHHHHH
Confidence            45566777777888888999998874 699999988765332222111  12111100 001111123467889999999


Q ss_pred             HHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHHHH
Q 019709          196 AAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLM  275 (337)
Q Consensus       196 ~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~lL~  275 (337)
                      ...+.+.|..|++.+..+++.....+++++++++++|+|++..++.|++++++|+.+....    +   .+....|+++.
T Consensus        78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~----~---~~~~~~G~~~~  150 (302)
T TIGR00817        78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT----E---LSFNWAGFLSA  150 (302)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC----c---ccccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999764311    1   13346799999


Q ss_pred             HHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHH
Q 019709          276 IVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVS  319 (337)
Q Consensus       276 llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l  319 (337)
                      ++|.+..|+.+++.++..++      ++.|...+..|...+.++
T Consensus       151 l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~  188 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTI------KSLDKTNLYAYISIMSLF  188 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhcc------CCCCcccHHHHHHHHHHH
Confidence            99999999999988875321      248888887777655543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.16  E-value=2.8e-10  Score=111.64  Aligned_cols=175  Identities=14%  Similarity=0.081  Sum_probs=134.3

Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhc-CccchhhhcCCCccchHh
Q 019709          111 NDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHA-GIVTDEMLSMPKAPFVAV  189 (337)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~-~~it~em~~~pk~kf~i~  189 (337)
                      ...++++.+++++--.+...-.+..|..++. .+||++++.++...-.++.......+++. .++.  ..+..+++.+.+
T Consensus        44 ~~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~llp~  120 (350)
T PTZ00343         44 PNFKWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK--SLKLFLKNFLPQ  120 (350)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHHHH
Confidence            3568999999988888888889999999887 47999999976643322211111111111 0111  011133568889


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcch
Q 019709          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (337)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~v  269 (337)
                      |++-.......++|..+++.+..+++.....+++++++++++|+|+++.+++|++++++|+++....+       .+...
T Consensus       121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~~~~~  193 (350)
T PTZ00343        121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------LHFTW  193 (350)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------chhHH
Confidence            99998888888899999999999999999999999999999999999999999999999999976421       12247


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHH
Q 019709          270 FWSLLMIVSFLLQAADTVLKEVIFLD  295 (337)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~F~~  295 (337)
                      .|.++.++|.+..|+.+++-++..++
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~  219 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKN  219 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            79999999999999999999987654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.99  E-value=2.1e-09  Score=105.71  Aligned_cols=137  Identities=18%  Similarity=0.159  Sum_probs=117.2

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec---CCCC
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS---GSNP  260 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s---gs~~  260 (337)
                      .|..+|+++-++.|.+.++++.|.++..+|+..|.-|..|.+++.++|+||.+..||...++-++|+.++-.+   +.++
T Consensus        93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a  172 (345)
T KOG2234|consen   93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA  172 (345)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999988743   2222


Q ss_pred             C-CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHHhhhc
Q 019709          261 G-HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVYMPSS  326 (337)
Q Consensus       261 g-~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~lllP  326 (337)
                      . .....|.+.|-...+.+|...+++.||=|++.|+      ++.++|.-|-.-++|+.++.++...
T Consensus       173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~------s~~s~wi~NiqL~~~g~~f~~l~~~  233 (345)
T KOG2234|consen  173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKG------SNVSLWIRNIQLYFFGILFNLLTIL  233 (345)
T ss_pred             cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHHHHHHh
Confidence            1 2346889999999999999999999999998654      2477777777777777776665543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1e-07  Score=92.50  Aligned_cols=200  Identities=16%  Similarity=0.212  Sum_probs=146.3

Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHH-HHHhCCC------CChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCC
Q 019709          111 NDRRVEIVIAAAVTVLLGVGNRVLY-KLALVPL------KHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK  183 (337)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~G~~N~Vl~-Kl~~~~~------~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk  183 (337)
                      .++-+.+.+++.+.-.+=+.=-|++ |++..+.      ++.|-|+...+.++.+++-...+  +.+..   +-+..-|+
T Consensus         9 ~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l--~~~k~---~~~~~apl   83 (327)
T KOG1581|consen    9 ANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAML--KWWKK---ELSGVAPL   83 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHH--hcccc---cCCCCCch
Confidence            3455555555544333322222332 5555544      26788888888887777653332  22221   12345688


Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCC--C
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP--G  261 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~--g  261 (337)
                      |+|...++...++..++.-|+.|++=+.|.+--..-+.-+|++=.++-|+||+..+|+.+++|.+|+.+-...+.++  +
T Consensus        84 ~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~  163 (327)
T KOG1581|consen   84 YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSS  163 (327)
T ss_pred             hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcc
Confidence            99999999999999999999999999999999999888899999999999999999999999999988876643222  2


Q ss_pred             CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhc-CCCC-eEEEeehhhHHHHH
Q 019709          262 HSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLK-GGVD-LFVVNSYGSAFQVS  319 (337)
Q Consensus       262 ~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk-~~ld-if~vn~w~s~fQ~l  319 (337)
                      ++..+|.+.|.+|+...-.+.++-|..|+++|+++    | ++.| ++.+|-|+..+...
T Consensus       164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~----k~s~~~mM~~vNLf~~i~~~~  219 (327)
T KOG1581|consen  164 KSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY----KVSSLHMMFGVNLFSAILNGT  219 (327)
T ss_pred             ccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC----CccHhHHHHHHHHHHHHHHHH
Confidence            33347999999999999999999999999999864    2 1233 45566666666543

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.70  E-value=9.2e-08  Score=94.82  Aligned_cols=181  Identities=17%  Similarity=0.197  Sum_probs=120.1

Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhh
Q 019709          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG  190 (337)
Q Consensus       112 ~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~-~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~G  190 (337)
                      +|..+..+.++++=+.-.+..++.|...+. +..++  +.-+-...=.++.+++.+.+.+....++.. .-.+.+++++|
T Consensus         9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~--~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~-~~~~~~l~l~g   85 (358)
T PLN00411          9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYP--FLGYSYLLASLLLLPSLFFTNRSRSLPPLS-VSILSKIGLLG   85 (358)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccH--HHHHHHHHHHHHHHHHHHHHHHhcccCcch-HHHHHHHHHHH
Confidence            345666666777767777788888888864 23333  222211111112223333332211111100 00113577788


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHH------hccccceeeeehhhheeeceeeEeecCCCC----
Q 019709          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIF------LGRRYRVNQLFGCFLVGIGVIITVASGSNP----  260 (337)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~if------Lk~RY~~~qi~G~~IVl~Gviv~v~sgs~~----  260 (337)
                      ++-...+.+.+.|.+||+.....++......|+++++.+|      +|+|.+..|++|.+++++|+.++...+...    
T Consensus        86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  165 (358)
T PLN00411         86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVA  165 (358)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            8776666688999999999999999999999999999999      699999999999999999998765432100    


Q ss_pred             --------------CCCCCCcchHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 019709          261 --------------GHSLKGAGIFWSLLMIVSFLLQAADTVLKEVIFLD  295 (337)
Q Consensus       261 --------------g~s~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~  295 (337)
                                    .....++.++++++.++|++..|+.+++..+..++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~  214 (358)
T PLN00411        166 SSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE  214 (358)
T ss_pred             cccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00111223668999999999999999999886554

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.47  E-value=8.2e-08  Score=79.44  Aligned_cols=100  Identities=20%  Similarity=0.188  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHH-HHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccce
Q 019709          159 AVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRV  237 (337)
Q Consensus       159 ~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDa-l~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~  237 (337)
                      ++...+...+.+.++..++.++.++++....|++.. .+..+.+.|..|+++ ...++.+....|+++++.+++|+|.+.
T Consensus        10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~   88 (113)
T PF13536_consen   10 LFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSP   88 (113)
T ss_pred             HHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            334444455544444455555555555666788886 899999999999995 777999999999999999999999999


Q ss_pred             eeeehhhheeeceeeEeecCCC
Q 019709          238 NQLFGCFLVGIGVIITVASGSN  259 (337)
Q Consensus       238 ~qi~G~~IVl~Gviv~v~sgs~  259 (337)
                      .+++|+.++++|++++..++.+
T Consensus        89 ~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   89 RRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999887543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.42  E-value=3.2e-06  Score=83.02  Aligned_cols=194  Identities=18%  Similarity=0.237  Sum_probs=149.9

Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHhCC-CCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhh--hcCCCccch
Q 019709          111 NDRRVEIVIAAAVTVLLGVGNRVLYKLALVP-LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM--LSMPKAPFV  187 (337)
Q Consensus       111 ~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~-~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em--~~~pk~kf~  187 (337)
                      .++.....++...-..+.+...+..|..+++ -.+||.+++.++.+.=...+...    ...+..+...  .+.+.+..+
T Consensus        12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~----~~l~~~~~~~~~~~~~~~~ll   87 (316)
T KOG1441|consen   12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVI----KVLKLVPPSKISSKLPLRTLL   87 (316)
T ss_pred             cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHH----HHhcCCCCCccccccchHHHH
Confidence            3466777777888888899999999999998 56999999988443222222111    1111111111  345667788


Q ss_pred             HhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCc
Q 019709          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGA  267 (337)
Q Consensus       188 i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~  267 (337)
                      -+|++-..+..++..++.|+|.+-.|+.--.++|++.++++++.+++|+..-++-.+.++.|+.++-..+       .+-
T Consensus        88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e-------~~f  160 (316)
T KOG1441|consen   88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE-------LSF  160 (316)
T ss_pred             HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc-------ccc
Confidence            8999999999999999999999999999999999999999999999999999999999999998876631       234


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHH
Q 019709          268 GIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVS  319 (337)
Q Consensus       268 ~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l  319 (337)
                      .++|-+..++|.+.-|++|++.|+++++.    +.++|..-+-.+.+-.+++
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~----~~~~~~~~ll~y~ap~s~~  208 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSK----GESLNSMNLLYYTAPISLI  208 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccCchHHHHHhhhHHHH
Confidence            57788888999999999999999987421    1237777777777777654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.36  E-value=1.6e-06  Score=79.70  Aligned_cols=104  Identities=19%  Similarity=0.079  Sum_probs=88.5

Q ss_pred             ccchHhhH-HHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCC
Q 019709          184 APFVAVGL-LEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (337)
Q Consensus       184 ~kf~i~Gl-lDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~  262 (337)
                      +++++.|. +-.+...+.+.|..|++.....++.+....++++++.+++|+|.+..|++|+.+.++|+++...++.    
T Consensus        47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~----  122 (260)
T TIGR00950        47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN----  122 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc----
Confidence            34666664 4688889999999999999999999999999999999999999999999999999999988764431    


Q ss_pred             CCCCcchHHHHHHHHHhHHHHHHHHHHHHHh
Q 019709          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEVIF  293 (337)
Q Consensus       263 s~~~~~vlw~lL~llS~ip~AlSnV~kE~~F  293 (337)
                        .+....|+++.++|.+..|+.+++.-+..
T Consensus       123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~  151 (260)
T TIGR00950       123 --LSINPAGLLLGLGSGISFALGTVLYKRLV  151 (260)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence              13446799999999999999999977643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.31  E-value=8e-06  Score=74.70  Aligned_cols=166  Identities=22%  Similarity=0.173  Sum_probs=113.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCcc-chHhhHHHHHHH
Q 019709          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAP-FVAVGLLEALAA  197 (337)
Q Consensus       119 i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~k-f~i~GllDal~~  197 (337)
                      .+.+..-+....+....|...+.  +.|.+...+......... .+ ....+... .......++++ .+.-++..+...
T Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697          10 LALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALL-LL-PLLLLEPR-GLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHH-HH-HHHHhhcc-cccccccchHHHHHHHHHHHHHHH
Confidence            33444445566677777777665  455554443222222222 11 11111110 00111122233 444557788888


Q ss_pred             HHHHhhhccccccHHHHhcchhHHHHHHHHH-HHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHHHHH
Q 019709          198 ATGMAAGAILSGASIPILSQTFLVWQILLSI-IFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (337)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~-ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~lL~l  276 (337)
                      .+.+.+..|++.....++......++.+++. +++|+|.+..++.|.++..+|++++..++.....   . ...++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~---~-~~~g~~~~l  160 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI---L-SLLGLLLAL  160 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh---H-HHHHHHHHH
Confidence            9999999999999999999999999999997 7779999999999999999999999887543211   1 578999999


Q ss_pred             HHhHHHHHHHHHHHHHh
Q 019709          277 VSFLLQAADTVLKEVIF  293 (337)
Q Consensus       277 lS~ip~AlSnV~kE~~F  293 (337)
                      ++.+..|+.+++.++..
T Consensus       161 ~a~~~~a~~~~~~~~~~  177 (292)
T COG0697         161 AAALLWALYTALVKRLS  177 (292)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999999753

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.22  E-value=1e-06  Score=84.99  Aligned_cols=172  Identities=20%  Similarity=0.212  Sum_probs=109.6

Q ss_pred             HHHHHHHHhhhh-hHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHH
Q 019709          119 IAAAVTVLLGVG-NRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAA  197 (337)
Q Consensus       119 i~~i~~Vi~G~~-N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~~  197 (337)
                      ++.+..+..|++ |.+..-.. .+...-..-+-.+.+|.++.+.+.+..-+.+.     -..++|-+.|+++-.+=...|
T Consensus         5 ~~ai~~vf~GCcsnvv~lE~L-~~~~pgsgNLITFaqFlFia~eGlif~skf~~-----~k~kiplk~Y~i~V~mFF~vn   78 (330)
T KOG1583|consen    5 AAAISLVFGGCCSNVVFLELL-VRNEPGSGNLITFAQFLFIATEGLIFTSKFFT-----VKPKIPLKDYAITVAMFFIVN   78 (330)
T ss_pred             HHHHHHHHHhhhchHHHHHHH-HHhCCCCeeehHHHHHHHHHHhceeeeccccc-----cCCCCchhhhheehheeeeee
Confidence            344555555555 55544443 33332233344455677777766553322222     114455555655433322233


Q ss_pred             HHHHhhhc-cccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEee-cCCCCCC---C-----CCCc
Q 019709          198 ATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVA-SGSNPGH---S-----LKGA  267 (337)
Q Consensus       198 ~L~viA~~-ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~-sgs~~g~---s-----~~~~  267 (337)
                      ..-..|.. ..|.++-.+.++.....+|+++++++||||+..||..++++.+|++++-. +..+...   +     ..+.
T Consensus        79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~  158 (330)
T KOG1583|consen   79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSD  158 (330)
T ss_pred             eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCccccc
Confidence            33333444 67888889999999999999999999999999999999999999888755 3211100   0     0111


Q ss_pred             c---hHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 019709          268 G---IFWSLLMIVSFLLQAADTVLKEVIFLDA  296 (337)
Q Consensus       268 ~---vlw~lL~llS~ip~AlSnV~kE~~F~~~  296 (337)
                      .   .+|..+..++.+..|..-.|+|...++|
T Consensus       159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ky  190 (330)
T KOG1583|consen  159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKY  190 (330)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1   4567888899999999999999998877

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.18  E-value=1.7e-05  Score=75.74  Aligned_cols=103  Identities=18%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             chHhhHHHHHHH-HHHHhhhcc-ccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCC
Q 019709          186 FVAVGLLEALAA-ATGMAAGAI-LSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHS  263 (337)
Q Consensus       186 f~i~GllDal~~-~L~viA~~y-tsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s  263 (337)
                      .+..|++-.... .+.+.+..| +|.....++.+...+++++++++++|+|.+..|++|+++.++|+.+...++.++   
T Consensus        61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~---  137 (299)
T PRK11453         61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG---  137 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC---
Confidence            333455433333 344567777 466677888888989999999999999999999999999999988876442211   


Q ss_pred             CCCcchHHHHHHHHHhHHHHHHHHHHHHH
Q 019709          264 LKGAGIFWSLLMIVSFLLQAADTVLKEVI  292 (337)
Q Consensus       264 ~~~~~vlw~lL~llS~ip~AlSnV~kE~~  292 (337)
                       .+....++++.+++.+..|+.+++..+.
T Consensus       138 -~~~~~~G~~l~l~aal~~a~~~v~~~~~  165 (299)
T PRK11453        138 -QHVAMLGFMLTLAAAFSWACGNIFNKKI  165 (299)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1224579999999999999999998874

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=98.17  E-value=3e-06  Score=84.54  Aligned_cols=130  Identities=29%  Similarity=0.288  Sum_probs=107.3

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCC-CCCCc
Q 019709          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH-SLKGA  267 (337)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~-s~~~~  267 (337)
                      ...+=.++|+....|+.||+.+++.+|+-++=-||+.++.+|...|++..+.++++++++|++++...++.+.. ..+++
T Consensus       165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~  244 (416)
T KOG2765|consen  165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR  244 (416)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence            44445679999999999999999999999999999999999999999999999999999999999988765432 24577


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHHHHHHH
Q 019709          268 GIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQVSFVY  322 (337)
Q Consensus       268 ~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ~l~~~  322 (337)
                      ..+|+++-++|++.||+=.|.=-+-..+    -++++|+=.+-|++++|.++...
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~----eg~rvdi~lffGfvGLfnllllw  295 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGD----EGERVDIQLFFGFVGLFNLLLLW  295 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccc----ccccccHHHHHHHHHHHHHHHHh
Confidence            7999999999999999987754432211    11359988888999999876444

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.09  E-value=7.4e-05  Score=71.32  Aligned_cols=161  Identities=12%  Similarity=0.038  Sum_probs=101.5

Q ss_pred             HHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHHHH-H
Q 019709          121 AAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALAAA-T  199 (337)
Q Consensus       121 ~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~~~-L  199 (337)
                      .++.+++-.+|-+..|...+.+.  |+.+..+-...-.++.+++  .+ +    ++  .+..+|+..+.|.+-..... +
T Consensus         9 ~l~a~~~Wg~~~~~~k~~~~~~~--P~~~~~~R~~~a~l~l~~~--~~-~----~~--~~~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          9 GLIAILLWSTMVGLIRGVSESLG--PVGGAAMIYSVSGLLLLLT--VG-F----PR--LRQFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCC--hHHHHHHHHHHHHHHHHHH--cc-c----cc--cccccHHHHHHHhHHHHHHHHH
Confidence            33344445577889998877543  3334433221111111111  11 1    11  11123455666666433333 3


Q ss_pred             HHhhhc----cccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCC--CC--CCCCcchHH
Q 019709          200 GMAAGA----ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNP--GH--SLKGAGIFW  271 (337)
Q Consensus       200 ~viA~~----ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~--g~--s~~~~~vlw  271 (337)
                      .+.|..    +++.....++......++++++++++|+|.+..|++|+++.++|+.+...++.+.  ++  ...+....|
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G  157 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLS  157 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHH
Confidence            344544    4566666889999999999999999999999999999999999998877653211  00  011234569


Q ss_pred             HHHHHHHhHHHHHHHHHHHHH
Q 019709          272 SLLMIVSFLLQAADTVLKEVI  292 (337)
Q Consensus       272 ~lL~llS~ip~AlSnV~kE~~  292 (337)
                      +++.++|.+..|+.+++-++.
T Consensus       158 ~~~~l~aa~~~A~~~v~~k~~  178 (295)
T PRK11689        158 YGLAFIGAFIWAAYCNVTRKY  178 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998874

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.06  E-value=2.9e-05  Score=73.39  Aligned_cols=102  Identities=10%  Similarity=-0.005  Sum_probs=82.4

Q ss_pred             ccchH-hhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCC
Q 019709          184 APFVA-VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGH  262 (337)
Q Consensus       184 ~kf~i-~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~  262 (337)
                      |.+++ -|...+....+...|+++++.+...++.....+++++++++++|+|.+..|++|+.++++|+.+...++..   
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~---  139 (281)
T TIGR03340        63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA---  139 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc---
Confidence            33444 44568888889999999999999999999999999999999999999999999999999999876654321   


Q ss_pred             CCCCcchHHHHHHHHHhHHHHHHHHHHHH
Q 019709          263 SLKGAGIFWSLLMIVSFLLQAADTVLKEV  291 (337)
Q Consensus       263 s~~~~~vlw~lL~llS~ip~AlSnV~kE~  291 (337)
                         .....+.++.+++.+.+|+.+++..+
T Consensus       140 ---~~~~~g~~~~l~aal~~a~~~i~~k~  165 (281)
T TIGR03340       140 ---QHRRKAYAWALAAALGTAIYSLSDKA  165 (281)
T ss_pred             ---ccchhHHHHHHHHHHHHHHhhhhccc
Confidence               11234556788899999998886554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.04  E-value=5e-05  Score=72.26  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHH-
Q 019709          115 VEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLE-  193 (337)
Q Consensus       115 ~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllD-  193 (337)
                      +.+..+.+.+.+.=..|-+..|...+.+....  ...+-...-.++.+++...+..+ .-++    .++.++++.|.+- 
T Consensus         7 ~~~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~--~~~~R~~~a~l~ll~~~~~~~~~-~~~~----~~~~~~~~~g~~~~   79 (292)
T PRK11272          7 LPLFGALFALYIIWGSTYLVIRIGVESWPPLM--MAGVRFLIAGILLLAFLLLRGHP-LPTL----RQWLNAALIGLLLL   79 (292)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHHHhCCC-CCcH----HHHHHHHHHHHHHH
Confidence            45556666666777779999998887554432  33322222222223332222111 1011    1123456677664 


Q ss_pred             HHHHHHHHhhh-ccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHH
Q 019709          194 ALAAATGMAAG-AILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWS  272 (337)
Q Consensus       194 al~~~L~viA~-~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~  272 (337)
                      +....+...|. .+++.....++......++++++.+ +|+|.++.|++|+++.++|+++....+.     . +....|+
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-----~-~~~~~G~  152 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-----L-SGNPWGA  152 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-----c-ccchHHH
Confidence            45667778888 8998888899999999999999985 6999999999999999999887643211     1 2235789


Q ss_pred             HHHHHHhHHHHHHHHHHHH
Q 019709          273 LLMIVSFLLQAADTVLKEV  291 (337)
Q Consensus       273 lL~llS~ip~AlSnV~kE~  291 (337)
                      ++.++|.+.+|+.+++.++
T Consensus       153 l~~l~a~~~~a~~~~~~~~  171 (292)
T PRK11272        153 ILILIASASWAFGSVWSSR  171 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998776

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.03  E-value=3.1e-05  Score=73.90  Aligned_cols=91  Identities=16%  Similarity=0.085  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcch
Q 019709          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (337)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~v  269 (337)
                      +++=+.+..+.+.|..++|.....++..+.-.++++++++|+|+|.++.|++|+++.++|+++...++.       +.  
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~--  150 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL--  150 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc--
Confidence            345666788899999999999999999999999999999999999999999999999999988764411       11  


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHH
Q 019709          270 FWSLLMIVSFLLQAADTVLKEV  291 (337)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~  291 (337)
                        +++.++|++.+|+.+++.++
T Consensus       151 --~~~~l~aa~~~a~~~i~~r~  170 (296)
T PRK15430        151 --PIIALGLAFSFAFYGLVRKK  170 (296)
T ss_pred             --cHHHHHHHHHHHHHHHHHHh
Confidence              24678889999999988776

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.99  E-value=7.7e-06  Score=65.79  Aligned_cols=70  Identities=31%  Similarity=0.391  Sum_probs=63.8

Q ss_pred             ccchHhhHHH-HHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeE
Q 019709          184 APFVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (337)
Q Consensus       184 ~kf~i~GllD-al~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~  253 (337)
                      ...+++|.+. +.+..+.+.|..+++.+...++.....+++++++++++|+|.+..|++|+.++++|+++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3466688774 999999999999999999999999999999999999999999999999999999997653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00688 rarD rarD protein

Probab=97.92  E-value=5.6e-05  Score=70.15  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCC
Q 019709          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLK  265 (337)
Q Consensus       186 f~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~  265 (337)
                      ..+.|++=+.+..+.+.|.+|++.....++.++.-.|+++++.+++|+|.++.|++|+++.++|+++...++.       
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            4556777778889999999999999999999999999999999999999999999999999999887654311       


Q ss_pred             CcchHHHHHHHHHhHHHHHHHHHHHH
Q 019709          266 GAGIFWSLLMIVSFLLQAADTVLKEV  291 (337)
Q Consensus       266 ~~~vlw~lL~llS~ip~AlSnV~kE~  291 (337)
                      +.    .++.+++.+.+|+.+++.++
T Consensus       146 ~~----~~~~l~aa~~~a~~~i~~~~  167 (256)
T TIGR00688       146 SL----PWEALVLAFSFTAYGLIRKA  167 (256)
T ss_pred             Cc----hHHHHHHHHHHHHHHHHHhh
Confidence            11    13567889999998888776

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.90  E-value=3.6e-05  Score=74.39  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=107.8

Q ss_pred             CccchH-hhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec----C
Q 019709          183 KAPFVA-VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS----G  257 (337)
Q Consensus       183 k~kf~i-~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s----g  257 (337)
                      ++++++ =|+.-..|-.++++|+.|.|.+=..+...++-.+|.++++++||.||+.++-+|..+.+.|+++.+=|    |
T Consensus        96 ~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG  175 (346)
T KOG4510|consen   96 KRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFG  175 (346)
T ss_pred             cEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccC
Confidence            345544 57778889999999999999999999999999999999999999999999999999999999999877    3


Q ss_pred             CCCC--CC-CCCcchHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCC-CCeEEEeehh---hHHHHHHHHhhhccccc
Q 019709          258 SNPG--HS-LKGAGIFWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGG-VDLFVVNSYG---SAFQVSFVYMPSSTFSV  330 (337)
Q Consensus       258 s~~g--~s-~~~~~vlw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~-ldif~vn~w~---s~fQ~l~~~lllPi~sl  330 (337)
                      +...  ++ ..+....+...-+.|..+.|--.++-.++         +| .|.+.-.++-   .+-..+++|..+|=..+
T Consensus       176 ~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~i---------Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l  246 (346)
T KOG4510|consen  176 DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYI---------GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL  246 (346)
T ss_pred             CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHh---------hccccEEEEehHHHHHHHHHHHHHHhhccceec
Confidence            3221  11 11333455666666666655444443332         34 8877766654   33445678889999999


Q ss_pred             cccCCC
Q 019709          331 KIMGYS  336 (337)
Q Consensus       331 p~~g~~  336 (337)
                      |+=|.|
T Consensus       247 P~cgkd  252 (346)
T KOG4510|consen  247 PHCGKD  252 (346)
T ss_pred             Cccccc
Confidence            987765

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00013  Score=70.83  Aligned_cols=176  Identities=15%  Similarity=0.187  Sum_probs=131.3

Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHhCC--CCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHh
Q 019709          112 DRRVEIVIAAAVTVLLGVGNRVLYKLALVP--LKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV  189 (337)
Q Consensus       112 ~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~--~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~  189 (337)
                      .+-....+++.+....=..|-++.-+..+.  ++.|.|+++..+...|..+....   ++   .+.++.+-+||+-|.++
T Consensus        39 pkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie---~~---~~~~k~r~iP~rtY~~l  112 (367)
T KOG1582|consen   39 PKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIE---LQ---LIQTKRRVIPWRTYVIL  112 (367)
T ss_pred             chhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheE---EE---eecccceecchhHhhhh
Confidence            344455666666666666666666666664  56899999998887776443211   11   13445677899999999


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcch
Q 019709          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (337)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~v  269 (337)
                      +++-+-..-|..-...|+.=+-|.+.-|.-+.=+|+-..++=++||.+..+..+.+..+|++.--..|+...+   .=..
T Consensus       113 a~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP---NF~~  189 (367)
T KOG1582|consen  113 AFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP---NFNL  189 (367)
T ss_pred             HhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC---Ccce
Confidence            9998888888888888999999999999999999999999999999999999999999999987776553322   2335


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 019709          270 FWSLLMIVSFLLQAADTVLKEVIFLDA  296 (337)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~F~~~  296 (337)
                      .|..++-.+-+..|+--=.||+.++++
T Consensus       190 ~Gv~mIsgALl~DA~iGNvQEk~m~~~  216 (367)
T KOG1582|consen  190 IGVMMISGALLADAVIGNVQEKAMKMN  216 (367)
T ss_pred             eeHHHHHHHHHHHHHhhHHHHHHHhhC
Confidence            555555556666777666799988764

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.41  E-value=9.2e-05  Score=70.59  Aligned_cols=172  Identities=16%  Similarity=0.209  Sum_probs=117.2

Q ss_pred             ccccchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHh
Q 019709          110 SNDRRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV  189 (337)
Q Consensus       110 ~~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~  189 (337)
                      +..|.+.  ....++-+-+++|.|+.|....                          +|.     +.|..+.|-|-|+.-
T Consensus        45 ~~~E~FT--falaLVf~qC~~N~vfAkvl~~--------------------------ir~-----~~~~D~t~~~~YaAc   91 (337)
T KOG1580|consen   45 ESIEKFT--FALALVFFQCTANTVFAKVLFL--------------------------IRK-----KTEIDNTPTKMYAAC   91 (337)
T ss_pred             cchheeh--HHHHHHHHHHHHHHHHHHhhee--------------------------ecc-----cccccCCcchHHHHH
Confidence            3344444  3344455567889988887643                          121     123344566777776


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcch
Q 019709          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (337)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~v  269 (337)
                      ++--.++-.-..-|.+|+|-+-|.+=...--.=+|++-.+|+||.|++.+|.+++.+++|+++-..-...-++.....-.
T Consensus        92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g  171 (337)
T KOG1580|consen   92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFG  171 (337)
T ss_pred             HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccc
Confidence            66666666667778889988876655444444478999999999999999999999999999887642111112234457


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHH
Q 019709          270 FWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAF  316 (337)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~f  316 (337)
                      +|-+|.++|-...++..+.||.+=..|  +-.+.--.++.|.|.+++
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~y--q~~g~~MM~~~NlwStL~  216 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASY--QRTGTSMMFYTNLWSTLY  216 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhh--ccCchhhHHHHHHHHHHH
Confidence            889999999999999999999963333  111123467788887776

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.38  E-value=0.0037  Score=60.01  Aligned_cols=103  Identities=20%  Similarity=0.119  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhcc-hhHHHHHHHHHHHhccccceee----eehhhheeeceeeEeecCCCCCCC
Q 019709          189 VGLLEALAAATGMAAGAILSGASIPILSQ-TFLVWQILLSIIFLGRRYRVNQ----LFGCFLVGIGVIITVASGSNPGHS  263 (337)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q-~~IP~tmIlS~ifLk~RY~~~q----i~G~~IVl~Gviv~v~sgs~~g~s  263 (337)
                      -|++-+.+|++.+.|.+++..+....+.+ ....+..+++.+++|+|.+..+    ++|++++++|++++..++.++.+.
T Consensus        65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~  144 (290)
T TIGR00776        65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI  144 (290)
T ss_pred             HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence            34558899999999999999999988888 6667899999999999999999    999999999988887664222110


Q ss_pred             CC-CcchHHHHHHHHHhHHHHHHHHHHHH
Q 019709          264 LK-GAGIFWSLLMIVSFLLQAADTVLKEV  291 (337)
Q Consensus       264 ~~-~~~vlw~lL~llS~ip~AlSnV~kE~  291 (337)
                      .+ .+...+.++-++|.+.+|...+.-+.
T Consensus       145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~  173 (290)
T TIGR00776       145 KSEFNFKKGILLLLMSTIGYLVYVVVAKA  173 (290)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            10 33466899999999999999988885

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.33  E-value=0.00029  Score=68.55  Aligned_cols=75  Identities=24%  Similarity=0.425  Sum_probs=66.2

Q ss_pred             cchHhh-HHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCC
Q 019709          185 PFVAVG-LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSN  259 (337)
Q Consensus       185 kf~i~G-llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~  259 (337)
                      +..+.| +++++|..+.+.|+.+.|.++.+-|....++++++++.++||+|.+..+++|+.+|++|.++.+..+..
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~  126 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK  126 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence            344455 357899999999999999999999999999999999999999999999999999999998887765443

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.23  E-value=0.0018  Score=56.46  Aligned_cols=132  Identities=23%  Similarity=0.284  Sum_probs=90.6

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHh-hHHHHHHH
Q 019709          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAV-GLLEALAA  197 (337)
Q Consensus       119 i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~-GllDal~~  197 (337)
                      ++.++--.+.....|+.|+-.+.+-  |-|-+..-+++-......+++. +..-..+.| ..-+.|-|+++ |+.-.++-
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vd--p~~At~IRtiVi~~~l~~v~~~-~g~~~~~~~-~~~k~~lflilSGla~glsw   81 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVD--PDFATTIRTIVILIFLLIVLLV-TGNWQAGGE-IGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccC--ccHHHHHHHHHHHHHHHHHHHh-cCceecccc-cCcceehhhhHHHHHHHHHH
Confidence            4445555667778899999888543  3333444443333322222222 211111212 22223567665 46677888


Q ss_pred             HHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEe
Q 019709          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (337)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v  254 (337)
                      ++-+.|...=..+...-++-.+..++.++|++|||.|.+..+++|+.++++|.+++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            888889888888888899999999999999999999999999999999999988764

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.11  E-value=0.018  Score=54.94  Aligned_cols=157  Identities=12%  Similarity=0.005  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhhHHHHHH
Q 019709          117 IVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVGLLEALA  196 (337)
Q Consensus       117 v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~GllDal~  196 (337)
                      +..+.+++++.+ .|.++.|...+.+....  +..+-...=.++.+++ ..+.+. ..+++    .+++.++.|++-...
T Consensus        14 ~~~~~la~~~~~-~~~~~~K~~~~~~~~~~--~~~~R~~~a~l~l~~~-~~~~~~-~~~~~----~~~~~~~~g~~~~~~   84 (293)
T PRK10532         14 ILLLLIAMASIQ-SGASLAKSLFPLVGAPG--VTALRLALGTLILIAI-FKPWRL-RFAKE----QRLPLLFYGVSLGGM   84 (293)
T ss_pred             HHHHHHHHHHHH-hhHHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHH-HhHHhc-cCCHH----HHHHHHHHHHHHHHH
Confidence            455566666666 56668998887433322  2222221111111222 111111 11111    123456788888888


Q ss_pred             HHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHHHHH
Q 019709          197 AATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMI  276 (337)
Q Consensus       197 ~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~lL~l  276 (337)
                      +.+.+.|.+|+|.....++..+...++++++    ++|.+  +..++.+.++|+.+...++.+.    ++....|+++.+
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~----~~~~~~G~ll~l  154 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDV----SHVDLTGAALAL  154 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCc----ccCChHHHHHHH
Confidence            8889999999999988888877777777766    35544  4556777888887766443221    123467999999


Q ss_pred             HHhHHHHHHHHHHHHH
Q 019709          277 VSFLLQAADTVLKEVI  292 (337)
Q Consensus       277 lS~ip~AlSnV~kE~~  292 (337)
                      ++.+.+|+.+++-.+.
T Consensus       155 ~aa~~~a~~~v~~r~~  170 (293)
T PRK10532        155 GAGACWAIYILSGQRA  170 (293)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999986654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.04  E-value=0.0033  Score=57.75  Aligned_cols=65  Identities=25%  Similarity=0.311  Sum_probs=58.9

Q ss_pred             chHhhHHH-HHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeece
Q 019709          186 FVAVGLLE-ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGV  250 (337)
Q Consensus       186 f~i~GllD-al~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gv  250 (337)
                      .+..|.+. ..+..+.+.|..+++......+.....++++++++++++++.+..|++|+.+++.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       194 LLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            45577665 678888899999999999999999999999999999999999999999999999886

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.86  E-value=0.0048  Score=52.32  Aligned_cols=69  Identities=26%  Similarity=0.359  Sum_probs=62.3

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceee
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv  252 (337)
                      ..+++.|++=..-|+..+....+|++...++++..--+.+.++|.++++.+.+..+++|..++++|..+
T Consensus        82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            345557777788888888889999999999999999999999999999999999999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=96.67  E-value=0.009  Score=58.89  Aligned_cols=169  Identities=15%  Similarity=0.212  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCC----ccchHhhHHH
Q 019709          118 VIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPK----APFVAVGLLE  193 (337)
Q Consensus       118 ~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk----~kf~i~GllD  193 (337)
                      +.+++++-.+..+=+-.+|-.... .+||-|.+.++..+-.  .|+.+..+-+....++....+.|    ++.+.-|++-
T Consensus        18 L~lVl~yY~~Si~Ltf~~~~~~~~-f~fPLf~ts~h~~v~f--lfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat   94 (349)
T KOG1443|consen   18 LALVLLYYFLSIGLTFYFKWLTKN-FHFPLFVTSLHLAVKF--LFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT   94 (349)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcC-cCCchHHHHHHHHHHH--HHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh
Confidence            334456666666656666665443 7899998887764322  23333333222223333334444    3344666777


Q ss_pred             HHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHH
Q 019709          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (337)
Q Consensus       194 al~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~l  273 (337)
                      +.---+...+..|++.+.+.|-.-++|.|.+++|.+|-=.|+++.=.+=++++.+|+++...-.+       +-.+.|-+
T Consensus        95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~  167 (349)
T KOG1443|consen   95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFF  167 (349)
T ss_pred             hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHH
Confidence            77777899999999999999999999999999999998888888777777888888888776422       23467888


Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHH
Q 019709          274 LMIVSFLLQAADTVLKEVIFLDA  296 (337)
Q Consensus       274 L~llS~ip~AlSnV~kE~~F~~~  296 (337)
                      ++..+....++-=.+-.++.+|.
T Consensus       168 lv~~aS~~sGlRW~~tQ~ll~~~  190 (349)
T KOG1443|consen  168 LVLAASLLSGLRWAFTQMLLRNQ  190 (349)
T ss_pred             HHHHHHHhhhhhHHHHHHHHhcC
Confidence            99999999999999999998874

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.01  Score=57.87  Aligned_cols=110  Identities=14%  Similarity=0.166  Sum_probs=86.7

Q ss_pred             hccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHHHHHHHhHHHH
Q 019709          204 GAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQA  283 (337)
Q Consensus       204 ~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~lL~llS~ip~A  283 (337)
                      +.|.+.+-.++=+....||++++++.+||.|=+..-+.||.++++|..+    |.+.+++.+.-.+.|.++-++|++.-|
T Consensus       123 L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l----GvdqE~~~~~ls~~GvifGVlaSl~vA  198 (347)
T KOG1442|consen  123 LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL----GVDQEGSTGTLSWIGVIFGVLASLAVA  198 (347)
T ss_pred             hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee----ccccccccCccchhhhHHHHHHHHHHH
Confidence            4588888888999999999999999999999999999999999998776    555555566778899999999999999


Q ss_pred             HHHHHHHHHhHHHHHhhcCC-CC-eEEEeehhhHHHHHHHHhhhccc
Q 019709          284 ADTVLKEVIFLDAAQRLKGG-VD-LFVVNSYGSAFQVSFVYMPSSTF  328 (337)
Q Consensus       284 lSnV~kE~~F~~~~~~lk~~-ld-if~vn~w~s~fQ~l~~~lllPi~  328 (337)
                      +-.++-.+..        .+ .| +|.+..+.+++..+   |.+|.+
T Consensus       199 lnaiytkk~l--------~~v~~~iw~lt~ynnv~a~l---Lflpll  234 (347)
T KOG1442|consen  199 LNAIYTKKVL--------PPVGDCIWRLTAYNNVNALL---LFLPLL  234 (347)
T ss_pred             HHHHhhheec--------ccccCeehhhHHHHHHHHHH---HHHHHH
Confidence            8887766432        34 55 56666677877543   445543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.64  E-value=0.034  Score=54.80  Aligned_cols=187  Identities=19%  Similarity=0.230  Sum_probs=123.8

Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHH--HhhhhHHHHHHHHHHHHHhcCccchhhhcCCC-ccchHh
Q 019709          113 RRVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQ--LATFGYVAVYFSILYLRYHAGIVTDEMLSMPK-APFVAV  189 (337)
Q Consensus       113 ~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q--~~t~~y~~vyf~il~~r~~~~~it~em~~~pk-~kf~i~  189 (337)
                      +..+-+...+.+.+....-++.-|..... .+||.++..  .|++..+++-    +.-.+.|-+.-|.++... ||++.+
T Consensus         9 ~~~~~l~sa~~Y~~sS~lm~vvNK~vls~-y~f~~~l~l~~~Q~l~s~~~v----~~lk~~~lv~~~~l~~~~~kk~~P~   83 (314)
T KOG1444|consen    9 KQSSPLLSALFYCLSSILMTVVNKIVLSS-YNFPMGLLLMLLQSLASVLVV----LVLKRLGLVNFRPLDLRTAKKWFPV   83 (314)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHH----HHHHHhceeecCCcChHHHHHHccH
Confidence            33444577888888899999999988763 355555444  5665555442    222233333333322222 456667


Q ss_pred             hHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcch
Q 019709          190 GLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGI  269 (337)
Q Consensus       190 GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~v  269 (337)
                      .++=...-+.+..+.+|.+.++..+++..++..+++.=..|+|+|.+..-+..++..++|-.....++.    +....+.
T Consensus        84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----sf~~~gY  159 (314)
T KOG1444|consen   84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL----SFNLRGY  159 (314)
T ss_pred             HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc----eecchhH
Confidence            777778888899999999999999999999999999999999999999999988888887776665532    1222234


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCCeEEEeehhhHHH
Q 019709          270 FWSLLMIVSFLLQAADTVLKEVIFLDAAQRLKGGVDLFVVNSYGSAFQ  317 (337)
Q Consensus       270 lw~lL~llS~ip~AlSnV~kE~~F~~~~~~lk~~ldif~vn~w~s~fQ  317 (337)
                      .|..   +.++..|.-.++-++..+.      .+.+-+-+..+.+++-
T Consensus       160 ~w~~---~n~~~~a~~~v~~kk~vd~------~~l~~~~lv~yNnl~~  198 (314)
T KOG1444|consen  160 SWAL---ANCLTTAAFVVYVKKSVDS------ANLNKFGLVFYNNLLS  198 (314)
T ss_pred             HHHH---HHHHHHHHHHHHHHHhhcc------ccccceeEEeehhHHH
Confidence            5544   4555556666666653321      1255555555555553

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.37  E-value=0.009  Score=57.34  Aligned_cols=136  Identities=19%  Similarity=0.172  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccc---hhhhcCCC--ccchHhh
Q 019709          116 EIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVT---DEMLSMPK--APFVAVG  190 (337)
Q Consensus       116 ~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it---~em~~~pk--~kf~i~G  190 (337)
                      -++++.+.+ +++....+..|...++.+..++-+-..+++.-++..+.....-. .+...   +-....|.  +..++..
T Consensus       155 G~~ll~~sl-~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~-~~~~~~~~~f~~~~p~~~~~l~~~s  232 (303)
T PF08449_consen  155 GIILLLLSL-LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP-TGEFRSAIRFISAHPSVLLYLLLFS  232 (303)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhHhhHHHHHHHHhHHHHHHHHHHH
Confidence            344444444 44555666677777766666643333333222222222211100 11000   01112222  3455677


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeE
Q 019709          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (337)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~  253 (337)
                      ++-++++...+.-...++.....+....--+.++++|.++.+++++..||+|++++.+|+.+-
T Consensus       233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            778888888887777888888999999999999999999999999999999999999987653

; GO: 0055085 transmembrane transport

>TIGR00803 nst UDP-galactose transporter

Probab=96.08  E-value=0.013  Score=53.54  Aligned_cols=107  Identities=18%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             HhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCc
Q 019709          188 AVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGA  267 (337)
Q Consensus       188 i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~  267 (337)
                      +++..=...+.+...+..+..+.-.+.. |.-+..+++++...+++|.+..|+.+......|+.++-...........++
T Consensus         4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~   82 (222)
T TIGR00803         4 VPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN   82 (222)
T ss_pred             ccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence            3444445566666666666666666666 777778888888888888888887777666666554433221111112345


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 019709          268 GIFWSLLMIVSFLLQAADTVLKEVIFLD  295 (337)
Q Consensus       268 ~vlw~lL~llS~ip~AlSnV~kE~~F~~  295 (337)
                      .+.+....+.++...++..+|+|+.+|+
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~  110 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKD  110 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccC
Confidence            6677777888899999999999998654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.93  E-value=0.0094  Score=56.35  Aligned_cols=64  Identities=28%  Similarity=0.413  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceee
Q 019709          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (337)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv  252 (337)
                      .+++...+..+.+.+.++.+.+....+.+...++..+++++++|++.+..|++|+.++++|+.+
T Consensus       217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            4466788888999999999999999999999999999999999999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.02  Score=56.63  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=61.1

Q ss_pred             hHhhHH-HHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          187 VAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       187 ~i~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      ...|++ =.+|.+.-+.||.+-|.++..-|....++.+.+++.+|||+|.+..-.+||++|++|-.+.+.-
T Consensus        67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            334433 4468888999999999999999999999999999999999999999999999999996666654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.34  E-value=0.0092  Score=49.98  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEe
Q 019709          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (337)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v  254 (337)
                      .+-..+.++...+....|.+....+-+....++++++++++|.|.+..|++|..++++|+++..
T Consensus        45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4456677778888888888887666679999999999999999999999999999999987653

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=94.97  E-value=0.11  Score=49.56  Aligned_cols=70  Identities=19%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             hHhhHHHH-HHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          187 VAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       187 ~i~GllDa-l~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      +.+|++-. .+..+.+.+.++++.+...++.....++.+++++++++++.+..|++|+.++++|++.....
T Consensus       212 l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        212 LAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            45776654 55557799999999999999999999999999999999999999999999999987775443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=94.91  E-value=0.068  Score=53.34  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          189 VGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       189 ~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      .|..-.++-.+-+.+..+.+++-..+......++++++++++|+++.+..|++|++++++|+.++..+
T Consensus       262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            44444556666777888999999999999999999999999999999999999999999999887654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=94.86  E-value=0.053  Score=51.78  Aligned_cols=71  Identities=11%  Similarity=0.005  Sum_probs=62.6

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       186 f~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      .+..|+.-.++.++.+.+.++++++...++.-...++.+++++++|+++.+..|++|++++++|+.+....
T Consensus       218 l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        218 LLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            34456667778888899999999999999999999999999999999999999999999999998776544

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.24  E-value=0.14  Score=46.76  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=62.0

Q ss_pred             cchHhhHHHH-HHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEe
Q 019709          185 PFVAVGLLEA-LAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (337)
Q Consensus       185 kf~i~GllDa-l~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v  254 (337)
                      .....|++.. ++.++...+....+.....++....+++.+++++++++++.+..|++|+.+++.|+.+..
T Consensus       216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence            4566777777 689999999999999999999988899999999999999999999999999998876643

>TIGR00803 nst UDP-galactose transporter

Probab=94.12  E-value=0.22  Score=45.48  Aligned_cols=67  Identities=13%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceee
Q 019709          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (337)
Q Consensus       186 f~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv  252 (337)
                      ...+.++-+.++.++.....|.+.....+....-+.++.++|+++.++..+..|++|+.+|+.|+.+
T Consensus       155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            4456677888889988888899999999999999999999999999999999999999999999865

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=93.73  E-value=0.19  Score=49.56  Aligned_cols=63  Identities=11%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHH----HhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceee
Q 019709          190 GLLEALAAATG----MAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVII  252 (337)
Q Consensus       190 GllDal~~~L~----viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv  252 (337)
                      .++-.+..++.    +.+..++++....+.+..--++++++++++++...+..|++|++++++|+++
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL  345 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence            33344444443    4588899999999999999999999999999999999999999999999864

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=93.32  E-value=0.3  Score=46.45  Aligned_cols=68  Identities=12%  Similarity=0.026  Sum_probs=59.4

Q ss_pred             chHhhHH-HHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeE
Q 019709          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (337)
Q Consensus       186 f~i~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~  253 (337)
                      .+.+|++ -+.+..+...+.++.+.+...++.....++.+++++++++++.+..|++|+++++.|+++.
T Consensus       215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            3445554 5567778888999999999999999999999999999999999999999999999998764

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.32  E-value=0.11  Score=48.95  Aligned_cols=116  Identities=19%  Similarity=0.179  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecCCCCCCCCCCcchHHHH
Q 019709          194 ALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASGSNPGHSLKGAGIFWSL  273 (337)
Q Consensus       194 al~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~l  273 (337)
                      ..+|++-..|+.-.+++...-+.+..--|+-+++++.||.|+...+++.+.+.+.|+++....|..  +   ..++++..
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~--~---a~e~iGi~  138 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE--H---ADEIIGIA  138 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch--h---hhhhhhHH
Confidence            348999999999999999999999999999999999999999999999999999999988766421  1   34688888


Q ss_pred             HHHHHhHHHHHHHHHHHHHhHHHHHhhcCC--CCeEEEeehhhHHHHHHH
Q 019709          274 LMIVSFLLQAADTVLKEVIFLDAAQRLKGG--VDLFVVNSYGSAFQVSFV  321 (337)
Q Consensus       274 L~llS~ip~AlSnV~kE~~F~~~~~~lk~~--ldif~vn~w~s~fQ~l~~  321 (337)
                      ..+.|+...|+--|.    ||..   +++.  -|.-.+.+.-++|.+++.
T Consensus       139 ~AV~SA~~aAlYKV~----FK~~---iGnAn~Gdaa~FmS~LGF~NL~~~  181 (290)
T KOG4314|consen  139 CAVGSAFMAALYKVL----FKMF---IGNANFGDAAHFMSCLGFFNLCFI  181 (290)
T ss_pred             HHHHHHHHHHHHHHH----HHHH---hccCcchhHHHHHHHHHHHHHHHH
Confidence            888888776655444    4332   2222  344444555556665544

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=93.10  E-value=0.033  Score=53.26  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             chHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecC
Q 019709          186 FVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (337)
Q Consensus       186 f~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sg  257 (337)
                      ++..|..-+.+..+.+.|+++.+.+...++.-...++.+++++++++++.+..|++|+.++++|+.+...++
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~  287 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA  287 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334566788999999999999999999999999999999999999999999999999999988887766553

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=92.73  E-value=0.1  Score=44.44  Aligned_cols=71  Identities=15%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHH-HHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEe
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASI-PILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~-~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v  254 (337)
                      |+|+++=++..+|.++-+.....++.++. ++-+.....+|++..+++-++.-+...++|+.+++.|+.+++
T Consensus        42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv  113 (113)
T PF10639_consen   42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence            68999889999999999999999999986 566899999999999887777778888999999999998763

Many members are annotated as potential transmembrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=92.68  E-value=0.084  Score=50.72  Aligned_cols=72  Identities=19%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             ccchHhhHHHHHHHHHHHhhhc-cccccHHHHhcchhHHHHHHHHHHHhccccceeee----ehhhheeeceeeEee
Q 019709          184 APFVAVGLLEALAAATGMAAGA-ILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVIITVA  255 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~-ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi----~G~~IVl~Gviv~v~  255 (337)
                      |+-++.|++-..++.+.+.+.+ +.+.+...++.|.-.+...+++++++|++.+..|+    +|+++++.|+++...
T Consensus       212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            4556689888999999999999 99999999999999999999999999999999999    999999999877543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=92.64  E-value=0.36  Score=41.64  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             HHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhhhcCCCccchHhh-HHHHHHH
Q 019709          119 IAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEMLSMPKAPFVAVG-LLEALAA  197 (337)
Q Consensus       119 i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em~~~pk~kf~i~G-llDal~~  197 (337)
                      ++++.-+++++.-.++.|...+++++-+.....+..      .+     ...          .| ..+++.| .+-+++-
T Consensus         5 ~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~------~~-----~~~----------~p-~~~i~lgl~~~~la~   62 (129)
T PRK02971          5 LWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAA------LL-----AFG----------LA-LRAVLLGLAGYALSM   62 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHH------HH-----HHh----------cc-HHHHHHHHHHHHHHH
Confidence            456666777888899999998877643322210000      00     000          00 0123333 3355555


Q ss_pred             HHHHhhhccccccHHHHhcchhHHHHHHHHHH--HhccccceeeeehhhheeeceeeEeec
Q 019709          198 ATGMAAGAILSGASIPILSQTFLVWQILLSII--FLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~i--fLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      ++-..+....+.+...-+......++++.++.  +++++.+..|++|+.++++|++++..+
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            66666666666666544444444567677774  899999999999999999999886543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=90.95  E-value=0.51  Score=44.93  Aligned_cols=57  Identities=21%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             HHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEe
Q 019709          198 ATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITV  254 (337)
Q Consensus       198 ~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v  254 (337)
                      .+.+.+..++++....++...--++++++++++++++.+..|++|..++++|+.+.-
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence            455567889999999999888888888999999999999999999999999987643

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=89.90  E-value=0.19  Score=43.07  Aligned_cols=73  Identities=10%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccH-HHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      +++++.-.+=+++-++...+..+.|.+. +.+....-+..+.+++.+|++.+.+..|++|..++++|++..-..
T Consensus        31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3455566666677777777888888776 466678889999999999999999999999999999999877554

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=89.18  E-value=1.5  Score=41.83  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             chHhhHH-HHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          186 FVAVGLL-EALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       186 f~i~Gll-Dal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      .+.+|++ -+.+-.+.+.+.++.++....++.....++.+++++++|+.+.+..|++|+.++++|+.+...+
T Consensus       217 l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        217 LMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            3445544 3455556667778888888888888888999999999999999999999999999998876544

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=88.00  E-value=4.5  Score=38.30  Aligned_cols=129  Identities=13%  Similarity=0.119  Sum_probs=83.4

Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHhCCCCChhHHHHHHhhhhHHHHHHHHH-HHHHhcCccchhhhcCCC--ccchHhh
Q 019709          114 RVEIVIAAAVTVLLGVGNRVLYKLALVPLKHYPFFLAQLATFGYVAVYFSIL-YLRYHAGIVTDEMLSMPK--APFVAVG  190 (337)
Q Consensus       114 ~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~~~~nYp~Fl~q~~t~~y~~vyf~il-~~r~~~~~it~em~~~pk--~kf~i~G  190 (337)
                      -+-+...++..++.|.+....-|+.-.+-  -|.+.-.++-+.+-+++..+. +.+. .+.+.++. -+..  +...++-
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~~~~g-~f~G~~~~~~~~i  188 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSD-GSAISESG-FFHGYSWWVWIVI  188 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCC-chhhcchHHHHHH
Confidence            34444555666777888887778765433  444433333233322222222 2221 11222222 1122  2344566


Q ss_pred             HHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhhe
Q 019709          191 LLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLV  246 (337)
Q Consensus       191 llDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IV  246 (337)
                      ++-+.+++++.+-..|.+.-.=..-....|..+.++|.++.+.+++..-++|+.+|
T Consensus       189 ~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  189 FLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            78999999999999999998888899999999999999999999999999998765

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=87.18  E-value=1.4  Score=42.73  Aligned_cols=71  Identities=21%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CCccchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeee----ehhhheeeceee
Q 019709          182 PKAPFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQL----FGCFLVGIGVII  252 (337)
Q Consensus       182 pk~kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi----~G~~IVl~Gviv  252 (337)
                      ..|+=.+-|++-..+|+...++.+......---|+|..+..+.+...++||++=+..|+    +|++++++|.++
T Consensus       194 ~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  194 KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            34677889999999999999999999989999999999999999999999987665544    567777666554

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=84.78  E-value=0.87  Score=38.43  Aligned_cols=69  Identities=12%  Similarity=0.006  Sum_probs=57.7

Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccH-HHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeE
Q 019709          185 PFVAVGLLEALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIIT  253 (337)
Q Consensus       185 kf~i~GllDal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~  253 (337)
                      +.+++-.+=+++-++.-.|.++.|... +.+-.+.-+..+.+.+.++.|.+.+..|++|..++++|++..
T Consensus        37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            344555666777788888888888776 578888889999999999999999999999999999998754

>PF12398 DUF3660: Receptor serine/threonine kinase ; InterPro: IPR022126 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=84.21  E-value=0.69  Score=32.95  Aligned_cols=30  Identities=27%  Similarity=0.226  Sum_probs=23.8

Q ss_pred             eeeecccccCCCceEEEecCCccccccCCC
Q 019709           33 YLRDHHANQRLPTTLLFRSSKRNYYHNNSN   62 (337)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   62 (337)
                      ||..+++||-+|.-=++-||||++|+|+..
T Consensus         3 ~i~~~~RnQ~llmN~~v~sskr~~s~Enk~   32 (42)
T PF12398_consen    3 PIVNRQRNQDLLMNGMVLSSKRQLSGENKT   32 (42)
T ss_pred             ccccccccccccccceEEeccccccccCcc
Confidence            355567899998777788999999998754

The family is found in association with PF00954 from PFAM, PF01453 from PFAM, PF00069 from PFAM, PF08276 from PFAM. There is a conserved ELPL sequence motif. ; GO: 0004674 protein serine/threonine kinase activity

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=82.89  E-value=5.8  Score=39.61  Aligned_cols=58  Identities=14%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             HHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          199 TGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       199 L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      ++-+...+++++..++=.-++.|+.+++..++-|.+.++..++|.+++++|+++--..
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence            4445566778887777667889999999999999999999999999999999888764

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=81.84  E-value=0.91  Score=38.22  Aligned_cols=64  Identities=22%  Similarity=0.189  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhhhccccccH-HHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          193 EALAAATGMAAGAILSGAS-IPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       193 Dal~~~L~viA~~ytsgs~-~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      -+.+-++...|..+.|... +.+..+.-+..+.++++++++.+.+..|++|..++++|++..-..
T Consensus        40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3344444455555666655 456667788888999999999999999999999999998876443

>PF15169 DUF4564: Domain of unknown function (DUF4564)

Probab=81.83  E-value=1.2  Score=41.02  Aligned_cols=56  Identities=21%  Similarity=0.351  Sum_probs=44.1

Q ss_pred             hccccceeee-ehhhheeeceeeEeecCCCCCCCCCCcchHHHHHHHHHhHHHHHHHHH--HHHHhHH
Q 019709          231 LGRRYRVNQL-FGCFLVGIGVIITVASGSNPGHSLKGAGIFWSLLMIVSFLLQAADTVL--KEVIFLD  295 (337)
Q Consensus       231 Lk~RY~~~qi-~G~~IVl~Gviv~v~sgs~~g~s~~~~~vlw~lL~llS~ip~AlSnV~--kE~~F~~  295 (337)
                      |+++.....| +++.|+.+|+.....+         +..++|-++++++|++.|++|+=  ||.+|.+
T Consensus        15 Lkrsp~~rsWsl~~gi~siGl~~~yys---------~d~~~wK~fyv~~c~fva~~n~edwee~iFdK   73 (187)
T PF15169_consen   15 LKRSPGIRSWSLLVGIASIGLAAAYYS---------SDSLLWKLFYVAGCLFVALQNMEDWEEAIFDK   73 (187)
T ss_pred             EEcCCCccchhhHHHHHhcccceeeec---------CCchHHHHHHHHHHHHHHHhcchhhhheeEec
Confidence            5667777666 4667888898888877         34689999999999999999996  4566643

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=80.67  E-value=4.6  Score=38.34  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=105.2

Q ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHHHHhC--CCCChhHHHHHHhhhhHHHHHHHHHHHHHhcCccchhh-hcCCCc
Q 019709          108 SKSNDRRVEIVIAAAVTVLLGVGNRVLYKLALV--PLKHYPFFLAQLATFGYVAVYFSILYLRYHAGIVTDEM-LSMPKA  184 (337)
Q Consensus       108 ~~~~~~~~~v~i~~i~~Vi~G~~N~Vl~Kl~~~--~~~nYp~Fl~q~~t~~y~~vyf~il~~r~~~~~it~em-~~~pk~  184 (337)
                      |.+....+-=+.+.+.--.+...-+|++|+..-  .+++-..|.+.+..+-.+..+|+-+. .++++-.+.+. -..||-
T Consensus       127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lI-L~~T~VE~~qsFA~~PWG  205 (290)
T KOG4314|consen  127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALI-LAFTGVEHLQSFAAAPWG  205 (290)
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHH-HHHhchHHHHHHhhCCch
Confidence            334433332233344444455566788888765  36788888888777777777776532 23333322221 235666


Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccHHHHhcchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeecC
Q 019709          185 PFVAVGLLEALAAATGMAAGAILSGASIPILSQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVASG  257 (337)
Q Consensus       185 kf~i~GllDal~~~L~viA~~ytsgs~~~LL~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~sg  257 (337)
                      ...=++.+-..-|++..+|-.-+.+-++.+=.-..||-....-.+|-..-++...+.|..++++|.++...|-
T Consensus       206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~  278 (290)
T KOG4314|consen  206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE  278 (290)
T ss_pred             hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence            6777888888899999999999998888877777899999998888888888889999999999999988883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.01
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	95.85

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.01  E-value=0.0025  Score=54.34  Aligned_cols=73  Identities=22%  Similarity=0.157  Sum_probs=50.9

Q ss_pred             ccchHhhHHHHHHHHHHHhhhccccccHHHHh-cchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          184 APFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       184 ~kf~i~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      |++++..++-+++-++...|+.+.|.+....+ ......+++++++++|+.+.+..|++|+.++++|+++...+
T Consensus        31 ~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34555566788888999999999999976555 89999999999999999999999999999999998887554

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=95.85  E-value=0.0033  Score=51.11  Aligned_cols=72  Identities=22%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             cchHhhHHHHHHHHHHHhhhccccccHHHHh-cchhHHHHHHHHHHHhccccceeeeehhhheeeceeeEeec
Q 019709          185 PFVAVGLLEALAAATGMAAGAILSGASIPIL-SQTFLVWQILLSIIFLGRRYRVNQLFGCFLVGIGVIITVAS  256 (337)
Q Consensus       185 kf~i~GllDal~~~L~viA~~ytsgs~~~LL-~q~~IP~tmIlS~ifLk~RY~~~qi~G~~IVl~Gviv~v~s  256 (337)
                      ++++..++-..+-++...|+.+.|.+...-+ ......++.+++++++|.+.+..|++|+.++++|+++....
T Consensus        32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3444455667778888889999999887555 89999999999999999999999999999999998876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00